BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030371
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 272 bits (696), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 128/163 (78%), Positives = 141/163 (86%)
Query: 4 DRDPLVIGRVVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRTF 63
DRDPLV+GRVVGDVLD F R+ L VTY K V NG ELKPS V +QPRVE+GG+D+RTF
Sbjct: 7 DRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTF 66
Query: 64 YTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVFVL 123
YTLVMVDPDAPSPSDP LREYLHWLVTDIP TT ASFG+E++SYESPRPT+GIHR VFVL
Sbjct: 67 YTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVL 126
Query: 124 FRQHVKQNVCAPGWRQNFSCKDFAELYNLGSPVAAVYFNCQRE 166
F+Q +Q V APGWRQNF+ KDFAELYNLGSPVAAVYFN QRE
Sbjct: 127 FQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 247 bits (631), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 114/163 (69%), Positives = 134/163 (82%)
Query: 5 RDPLVIGRVVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRTFY 64
RDPL++ RVVGDVLD F R+I L VTY ++V NG L+PS V N+PRVEIGG+DLR FY
Sbjct: 9 RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFY 68
Query: 65 TLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVFVLF 124
TLVMVDPD PSPS+P LREYLHWLVTDIP TT +FG EIVSYE+P PT GIHR VF+LF
Sbjct: 69 TLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILF 128
Query: 125 RQHVKQNVCAPGWRQNFSCKDFAELYNLGSPVAAVYFNCQRET 167
RQ +Q V APGWRQNF+ ++FAE+YNLG PVAAV++N QRE+
Sbjct: 129 RQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/166 (61%), Positives = 131/166 (78%), Gaps = 3/166 (1%)
Query: 6 DPLVIGRVVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRTFYT 65
+PL++GRVVGDVLD FT T + V+Y+ K V NG EL PS+V ++PRVEI G DLR+F+T
Sbjct: 13 EPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFT 72
Query: 66 LVMVDPDAPSPSDPGLREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVFVLFR 125
LVM+DPD P PSDP L+E+LHW+VT+IP TT+A+FGKE+VSYE PRP++GIHRFVFVLFR
Sbjct: 73 LVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFR 132
Query: 126 QHVKQNVCAPGW--RQNFSCKDFAELYNLGSPVAAVYFNCQRETGS 169
Q ++ V P R +F+ + FA Y+LG PVAAV+FN QRET +
Sbjct: 133 QK-QRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAA 177
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 131/176 (74%), Gaps = 10/176 (5%)
Query: 6 DPLVIGRVVGDVLDNFTRTIPLMVTYSG----KDVKNGCELKPSAVINQPRVEIGGDDLR 61
DPLVIGRV+GDV+D+FT T+ + V Y+ K V NG EL PSAV + PRVE+ G D+R
Sbjct: 8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67
Query: 62 TFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVF 121
+F+TL+M DPD P PSDP LRE+LHW+VTDIP TT++SFGKE+VSYE PRP +GIHRFVF
Sbjct: 68 SFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVF 127
Query: 122 VLFRQHVK-QNVCAPG--WRQNFSCKDFAELYNLGSPVAAVYFNCQRETGSSASRR 174
+LF+Q + Q + +P R F+ + F + LG PVAAV+FNCQRET A+RR
Sbjct: 128 LLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRET---AARR 180
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 12/163 (7%)
Query: 13 VVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRT-FYTLVMVDP 71
+V DVLD ++ +VK G EL P+ V +QP V G + ++ TL+MVDP
Sbjct: 4 IVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDP 63
Query: 72 DAPSPSDPGLREYLHWLVTDIPETTEA-SFGKEIVSY--ESPRPTVGIHRFVFVLFRQHV 128
DAP+ DP RE LHW V +IP + E S G + Y P G+HR++F+L+RQ
Sbjct: 64 DAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQEN 123
Query: 129 K-------QNVCAPGWRQNFSCKDFAELYNLGSPVAAVYFNCQ 164
K N G R NF+ +DFA + LG P+AA Y+ Q
Sbjct: 124 KIEETPTISNTTRTG-RLNFNARDFAAKHGLGEPIAANYYQAQ 165
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 27 LMVTYSGKDVKN-GCELKPSAVINQPR-VEIGGDDLRTFYTLVMVDPDAPSPSDPGLREY 84
L V Y G V G L P+ V+N+P + G D YTLV+ DPDAPS DP RE+
Sbjct: 25 LRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 84
Query: 85 LHWLVTDIPETTEASFGKEIVSY--ESPRPTVGIHRFVFVLFRQHVKQNVCAP------- 135
H+LV ++ + + S G + Y P G+HR+V++++ Q N P
Sbjct: 85 HHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSG 143
Query: 136 GWRQNFSCKDFAELYNLGSPVAAVYFNCQ 164
R F ++F + Y+LG+PVA F +
Sbjct: 144 DNRGKFKVEEFRKKYHLGAPVAGTCFQAE 172
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 27 LMVTYSGKDVKN-GCELKPSAVINQPR-VEIGGDDLRTFYTLVMVDPDAPSPSDPGLREY 84
L V Y G V G L P+ V+N+P + G D YTLV+ DPDAPS DP RE+
Sbjct: 28 LRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 87
Query: 85 LHWLVTDIPETTEASFGKEIVSY--ESPRPTVGIHRFVFVLFRQHVKQNVCAP------- 135
H+LV ++ + + S G + Y P G+HR+V++++ Q N P
Sbjct: 88 HHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSG 146
Query: 136 GWRQNFSCKDFAELYNLGSPVAAVYFNCQ 164
R F + F + Y+LG+PVA F +
Sbjct: 147 DNRGKFKVESFRKKYHLGAPVAGTCFQAE 175
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 26 PLMVTYSGKDVKN-GCELKPSAVINQP-RVEIGGDDLRTFYTLVMVDPDAPSPSDPGLRE 83
PL V Y G +V G L P+ V N+P + G D YTLV+ DPDAPS DP RE
Sbjct: 23 PLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYRE 82
Query: 84 YLHWLVTDIPETTEASFGKEIVSY--ESPRPTVGIHRFVFVLFRQHVKQNVCAP------ 135
+ H+LV ++ + S G + Y P G+HR+V++++ Q P
Sbjct: 83 WHHFLVVNM-KGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRS 141
Query: 136 -GWRQNFSCKDFAELYNLGSPVAAVYFNCQ 164
R F F + Y LG+PVA + +
Sbjct: 142 GDHRGKFKVASFRKKYELGAPVAGTCYQAE 171
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 26 PLMVTYSGKDVKN-GCELKPSAVINQP-RVEIGGDDLRTFYTLVMVDPDAPSPSDPGLRE 83
PL V Y G +V G L P+ V N+P + G D YTLV+ DPDAPS DP RE
Sbjct: 23 PLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYRE 82
Query: 84 YLHWLVTDIPETTEASFGKEIVSY--ESPRPTVGIHRFVFVLFRQHVKQNVCAP------ 135
+ H+LV ++ + S G + Y P G+HR+V++++ Q P
Sbjct: 83 WHHFLVVNM-KGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRS 141
Query: 136 -GWRQNFSCKDFAELYNLGSPVAAVYFNCQ 164
R F F + Y LG+PVA + +
Sbjct: 142 GDHRGKFKVASFRKKYELGAPVAGTCYQAE 171
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 26 PLMVTYSGKDVKN-GCELKPSAVINQP-RVEIGGDDLRTFYTLVMVDPDAPSPSDPGLRE 83
PL VTY+G V G L P+ V N+P + G D YTLV+ DPDAPS DP RE
Sbjct: 24 PLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 83
Query: 84 YLHWLVTDIPETTEASFGKEIVSY--ESPRPTVGIHRFVFVLFRQHVKQNVCAP------ 135
+ H+LV ++ + + S G + Y P G+HR+V++++ Q P
Sbjct: 84 WHHFLVVNM-KGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRS 142
Query: 136 -GWRQNFSCKDFAELYNLGSPVAAVYFNCQ 164
R F F + Y L +PVA + +
Sbjct: 143 GDHRGKFKVASFRKKYELRAPVAGTCYQAE 172
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 27 LMVTYSGKDVKN-GCELKPSAVINQP-RVEIGGDDLRTFYTLVMVDPDAPSPSDPGLREY 84
L VTY+ +V+ G L P+ V ++P + G D YTL++ DPDAPS P RE+
Sbjct: 21 LRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVYREW 80
Query: 85 LHWLVTDIPETTEASFGKEIVSY--ESPRPTVGIHRFVFVLFRQHVKQNVCAP------- 135
H+LV ++ + + S G + Y P G+HR+V+++++Q P
Sbjct: 81 HHFLVVNM-KGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSG 139
Query: 136 GWRQNFSCKDFAELYNLGSPVAAVYFNCQRET 167
R F F + Y+LG+PVA + + ++
Sbjct: 140 DHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDS 171
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Query: 58 DDLRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEAS---------FGKE----- 103
DDL +TLVM DPDAPS +D E+ H + D+ EA+ F E
Sbjct: 87 DDL---FTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKG 143
Query: 104 ---IVSYESPRPTVGI--HRFVFVLFRQ 126
++ Y P P G HR+VF+L++Q
Sbjct: 144 SNTLIEYMGPAPPKGSGPHRYVFLLYKQ 171
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 19 DNFTRTIPLMVTY-SGKDVKNGCELKPSAVINQPR-VEIGGDDLRTF-YTLVMVDPDAPS 75
D + L +++ +GK+V +G L + + PR ++ + + + L MVDPD PS
Sbjct: 38 DKIDLNVDLFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPS 97
Query: 76 PSDPGLREYLHWLVTDIPETTEASFGKE-----IVSYESP--RPTVGIHR--FVFVLFRQ 126
P +EY+HW+V+ I +T E G + I+ Y P + G+HR F+ L ++
Sbjct: 98 RLRPDGKEYIHWVVSGI-KTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFIISLIKE 156
Query: 127 HVKQNVCA 134
K N+
Sbjct: 157 EDKDNITG 164
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 19 DNFTRTIPLMVTY-SGKDVKNGCELKPSAVINQPR-VEIGGDDLRTF-YTLVMVDPDAPS 75
+N T+ +++ SGK+V +G L + + PR ++ + + Y L +DPD PS
Sbjct: 31 ENVDLTVDXYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFXIDPDFPS 90
Query: 76 PSDPGLREYLHWLVTDIPETTEASFGKE-----IVSYESP--RPTVGIHR--FVFVLFRQ 126
P R+Y+HW V+ I ++ E G + ++ Y P + G+HR F+ L ++
Sbjct: 91 RRRPDGRDYVHWAVSGI-KSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKE 149
Query: 127 HVKQNVCA 134
K NV
Sbjct: 150 ENKGNVTG 157
>pdb|2O8Q|A Chain A, Crystal Structure Of A Protein With A Cupin-Like Fold And
Unknown Function (Bxe_c0505) From Burkholderia
Xenovorans Lb400 At 1.55 A Resolution
pdb|2O8Q|B Chain B, Crystal Structure Of A Protein With A Cupin-Like Fold And
Unknown Function (Bxe_c0505) From Burkholderia
Xenovorans Lb400 At 1.55 A Resolution
Length = 134
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 65 TLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEASFGKEIVSY---ESPRPTVGIHRFVF 121
T + +P S D GLRE+ + T + E T FG ++ + +PT H F
Sbjct: 6 TTIQHEPKDGSGFDRGLREFFEYRDTGVNEATGGXFGAHVIRAIPGKEAKPTWHTHTVGF 65
Query: 122 VLF 124
LF
Sbjct: 66 QLF 68
>pdb|3U24|A Chain A, The Structure Of A Putative Lipoprotein Of Unknown
Function From Shewanella Oneidensis
Length = 572
Score = 31.2 bits (69), Expect = 0.35, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 62 TFYTLVMVDPDAPSPSDPGLREYLHWL--VTDIPETTEASFGKEIVSYESP 110
T+Y + +D + ++ LREY HW+ + +I E + + + S ESP
Sbjct: 375 TYYNVTPLDGXSNESAESYLREYNHWILQILNIHEAIPGHYTQLVYSNESP 425
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 4 DRDPLVIGRVVGDVLD-NFTRTIPLMVTYSGKDVKNGCELKP 44
+ DP+ +GR+ GD NF+ V+ S KDV+NG + KP
Sbjct: 93 NMDPMTVGRIEGDCESLNFSE-----VSSSSKDVENGGKDKP 129
>pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 64 YTLVMVDPDAPSPSDPGLREYLHWLVTDIPET 95
+ + + DPDAP+ S + HW V +IP T
Sbjct: 48 FAVTVYDPDAPTGSG-----WWHWTVVNIPAT 74
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 37 KNGCELKPSAVINQ---------PRVEIGGDDLRTFYTLVMVDPDAPSPSDP 79
+N CE++ S V N+ ++I ++ +V DPDA SDP
Sbjct: 106 RNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDP 157
>pdb|1M0T|A Chain A, Yeast Glutathione Synthase
pdb|1M0T|B Chain B, Yeast Glutathione Synthase
pdb|1M0W|A Chain A, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
pdb|1M0W|B Chain B, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
Length = 491
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 6 DPLVIGRVVGD------VLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDD 59
D V+G+ + D +L F + PL T G++ K +PS + +P+ E GG++
Sbjct: 332 DEGVLGKYISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGNN 391
Query: 60 L 60
+
Sbjct: 392 V 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,879,196
Number of Sequences: 62578
Number of extensions: 254672
Number of successful extensions: 434
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 22
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)