Query 030371
Match_columns 178
No_of_seqs 129 out of 1190
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 3.1E-54 6.7E-59 337.1 19.0 172 1-172 2-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 1.7E-52 3.7E-57 327.5 13.9 175 1-175 1-181 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 1.4E-38 3E-43 243.8 16.3 138 26-163 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 2.8E-29 6E-34 190.6 12.0 129 25-162 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 2.3E-24 4.9E-29 166.5 11.9 122 35-162 6-158 (159)
6 cd00865 PEBP_bact_arch Phospha 99.7 7E-17 1.5E-21 123.5 12.7 95 48-152 25-138 (150)
7 PRK10257 putative kinase inhib 99.7 7.3E-16 1.6E-20 118.9 14.1 93 49-151 30-144 (158)
8 TIGR00481 Raf kinase inhibitor 99.7 5.1E-16 1.1E-20 117.8 11.2 94 49-152 14-129 (141)
9 PRK09818 putative kinase inhib 99.6 5.2E-15 1.1E-19 116.5 14.0 112 27-150 22-166 (183)
10 COG1881 Phospholipid-binding p 99.6 2.7E-15 5.8E-20 117.2 10.8 105 34-149 28-156 (174)
11 KOG3586 TBX1 and related T-box 42.7 28 0.00061 30.8 3.3 49 41-92 101-154 (437)
12 PF00976 ACTH_domain: Corticot 34.0 21 0.00046 20.8 0.8 14 164-177 8-21 (39)
13 PRK04243 50S ribosomal protein 28.3 71 0.0015 25.6 3.1 29 61-92 127-155 (196)
14 PTZ00026 60S ribosomal protein 25.4 83 0.0018 25.3 3.1 29 61-92 127-155 (204)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=3.1e-54 Score=337.09 Aligned_cols=172 Identities=78% Similarity=1.320 Sum_probs=161.0
Q ss_pred CCCCCCccccCCcccccCCCCCCCeeEEEEECCeecCCCcccCcccccCCCeEEEecCCCCceEEEEEECCCCCCCCCCC
Q 030371 1 MSGDRDPLVIGRVVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRTFYTLVMVDPDAPSPSDPG 80 (178)
Q Consensus 1 ~~~~~~~l~~~~Iipdvl~~f~P~~~L~V~f~~~~V~~G~~l~~~~~~~~P~i~~~~~~~~~~ytlvmiDpDap~~~~~~ 80 (178)
|..++++|++++||||||+.|.|+..|+|+|++..|.+|+.|++++++++|+|+|.+.+.+++|||+|+|||+|++.+++
T Consensus 2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~~~~ 81 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPSNPN 81 (175)
T ss_pred CcccccchhhCCcCCcccCCcCCceEEEEEECCcCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCCCCC
Confidence 55679999999999999999999999999999999999999999999999999998776689999999999999999999
Q ss_pred CcceEEEEEEccCCCcccCCCceeeeccCCCCCCCCCcEEEEEeeeCCccccCCCCCCCCCCHHHHHHHhCCCCceEEEE
Q 030371 81 LREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVFVLFRQHVKQNVCAPGWRQNFSCKDFAELYNLGSPVAAVY 160 (178)
Q Consensus 81 ~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvflL~~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~~Pva~~~ 160 (178)
+++||||++.||+++.....|+++++|+||.|++|+|||+|+||+|++.+....+..|.+||+++|++++||+.||||||
T Consensus 82 ~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~~~~~R~~F~~~~Fa~~~~L~~PvA~nf 161 (175)
T PLN00169 82 LREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAVY 161 (175)
T ss_pred cccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccCCcccCCCcCHHHHHHHhCCCCceEEEE
Confidence 99999999999998865567999999999999999999999999999988765677899999999999999999999999
Q ss_pred EEEeeCCCCCcc
Q 030371 161 FNCQRETGSSAS 172 (178)
Q Consensus 161 f~~~~d~~~~~~ 172 (178)
|++||++.+-+|
T Consensus 162 F~a~~~~~~~~~ 173 (175)
T PLN00169 162 FNCQRESGSGGR 173 (175)
T ss_pred EEEecCCcCCcc
Confidence 999999977666
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=1.7e-52 Score=327.47 Aligned_cols=175 Identities=47% Similarity=0.756 Sum_probs=163.9
Q ss_pred CCCCCCccccCCcccccCCCCCCCeeEEEEECC-eecCCCcccCcccccCCCeEEEecC-CCCceEEEEEECCCCCCCCC
Q 030371 1 MSGDRDPLVIGRVVGDVLDNFTRTIPLMVTYSG-KDVKNGCELKPSAVINQPRVEIGGD-DLRTFYTLVMVDPDAPSPSD 78 (178)
Q Consensus 1 ~~~~~~~l~~~~Iipdvl~~f~P~~~L~V~f~~-~~V~~G~~l~~~~~~~~P~i~~~~~-~~~~~ytlvmiDpDap~~~~ 78 (178)
|+..++.+.+++||+|+|+.+.|...|+|+|++ ..|++|+.|+++++++.|.|+|.+. +.+++|||||+|||||++++
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~~ 80 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRSD 80 (185)
T ss_pred CcchhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCCC
Confidence 677889999999999999999999999999986 8999999999999999999999985 78999999999999999999
Q ss_pred CCCcceEEEEEEccCCCcccCCCceeeeccCCCCC--CCCCcEEEEEeeeCCccccCC--CCCCCCCCHHHHHHHhCCCC
Q 030371 79 PGLREYLHWLVTDIPETTEASFGKEIVSYESPRPT--VGIHRFVFVLFRQHVKQNVCA--PGWRQNFSCKDFAELYNLGS 154 (178)
Q Consensus 79 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRYvflL~~Q~~~~~~~~--~~~R~~Fn~~~F~~~~~L~~ 154 (178)
|++++|||||++|||++.+.+.|++++.|++|.|+ +|.|||+||||+|+.+..... +..|.+||+++|+++++|++
T Consensus 81 p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg~ 160 (185)
T KOG3346|consen 81 PKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELGT 160 (185)
T ss_pred CcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccCC
Confidence 99999999999999999668899999999999999 789999999999999987643 57899999999999999999
Q ss_pred ceEEEEEEEeeCCCCCccccc
Q 030371 155 PVAAVYFNCQRETGSSASRRP 175 (178)
Q Consensus 155 Pva~~~f~~~~d~~~~~~~~~ 175 (178)
||||+||++|||+...+++..
T Consensus 161 PvA~~~f~aq~d~~~~~~~~~ 181 (185)
T KOG3346|consen 161 PVAGNFFQAQWDDYVPKLYKQ 181 (185)
T ss_pred chhhheehhhcchhhHHHHHh
Confidence 999999999999988777644
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=1.4e-38 Score=243.78 Aligned_cols=138 Identities=43% Similarity=0.723 Sum_probs=125.8
Q ss_pred eEEEEECC-eecCCCcccCcccccCCCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc----cC
Q 030371 26 PLMVTYSG-KDVKNGCELKPSAVINQPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE----AS 99 (178)
Q Consensus 26 ~L~V~f~~-~~V~~G~~l~~~~~~~~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~----~~ 99 (178)
.|.|+|++ ..|.+|+.+++++++.+|+|+|.... .+++|+|||+|||+|.+.++.++++||||++||+.+.. ..
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~ 81 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVS 81 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCccccccccC
Confidence 68999998 89999999999999999999999885 68999999999999999999999999999999998753 34
Q ss_pred CCceeeeccCCCCCC--CCCcEEEEEeeeCCccccCC-------CCCCCCCCHHHHHHHhCCCCceEEEEEEE
Q 030371 100 FGKEIVSYESPRPTV--GIHRFVFVLFRQHVKQNVCA-------PGWRQNFSCKDFAELYNLGSPVAAVYFNC 163 (178)
Q Consensus 100 ~g~~~~~Y~~P~P~~--G~HRYvflL~~Q~~~~~~~~-------~~~R~~Fn~~~F~~~~~L~~Pva~~~f~~ 163 (178)
.|..+++|+||+|+. |+|||+|+||+|++.+.+.. ...|.+||+++|++++||+.|||+|||++
T Consensus 82 ~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 82 KGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 678999999999995 69999999999999987643 46799999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.96 E-value=2.8e-29 Score=190.57 Aligned_cols=129 Identities=36% Similarity=0.604 Sum_probs=105.5
Q ss_pred eeEEEEE-CCeecCCCcccCccc-ccCCCeEEEecCCCCceEEEEEECCCCCCCCCCCCcceEEEEEEccC---------
Q 030371 25 IPLMVTY-SGKDVKNGCELKPSA-VINQPRVEIGGDDLRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIP--------- 93 (178)
Q Consensus 25 ~~L~V~f-~~~~V~~G~~l~~~~-~~~~P~i~~~~~~~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~--------- 93 (178)
..|.|+| ++..+..|+.+++.. ++..|+ .+++|+|+|+|||+|.+.+++.+++||||++||+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~-------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~ 74 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT-------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSD 74 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC-------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSS
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC-------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCCC
Confidence 4699999 788999999999999 888887 5789999999999999989999999999999999
Q ss_pred CC-cc-cCCCceeeeccCCCCC--CCCCcEEEEEeeeCCccccCCCCCCCCCCHHHHHHHhCCCCc-eEEEEEE
Q 030371 94 ET-TE-ASFGKEIVSYESPRPT--VGIHRFVFVLFRQHVKQNVCAPGWRQNFSCKDFAELYNLGSP-VAAVYFN 162 (178)
Q Consensus 94 ~~-~~-~~~g~~~~~Y~~P~P~--~G~HRYvflL~~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~~P-va~~~f~ 162 (178)
.. .. ...|..+++|.||+|+ +|.|||+|+||+|++.+.+ ......+++++.+++++|+.+ +|++|||
T Consensus 75 ~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l--~~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 75 GARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPL--SDGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp TCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTS--GBSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred ccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCC--CCCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 10 01 1236678999999999 5699999999999997655 223456889999999999987 8999997
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=2.3e-24 Score=166.51 Aligned_cols=122 Identities=32% Similarity=0.417 Sum_probs=98.0
Q ss_pred ecCC-CcccCc----ccccCCCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCccc----------
Q 030371 35 DVKN-GCELKP----SAVINQPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEA---------- 98 (178)
Q Consensus 35 ~V~~-G~~l~~----~~~~~~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~~---------- 98 (178)
.+.. |+.|+. ......|.|+|++.+ .+++|+|+|+|||+|.. ++|+||+++||+.+...
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~~~ 80 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVTD 80 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCCC-----CCceEEEEeccCcccccccccccccCC
Confidence 4455 777777 777778999999875 68999999999999843 48999999999986411
Q ss_pred --CCCc----------eeeeccCCCCCC--CCCcEEEEEeeeCCccccCC-CCCCCCCCHHHHHHHhCCCCceEEEEEE
Q 030371 99 --SFGK----------EIVSYESPRPTV--GIHRFVFVLFRQHVKQNVCA-PGWRQNFSCKDFAELYNLGSPVAAVYFN 162 (178)
Q Consensus 99 --~~g~----------~~~~Y~~P~P~~--G~HRYvflL~~Q~~~~~~~~-~~~R~~Fn~~~F~~~~~L~~Pva~~~f~ 162 (178)
..+. ....|.||+||. |.|||+|+||+|+..+.+.. ...|..|++.+|++.+.|+ ++|.++++
T Consensus 81 ~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL~-~~a~~~~~ 158 (159)
T cd00457 81 NGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQ 158 (159)
T ss_pred CCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCeee-EEEEEEEE
Confidence 1111 234999999996 58999999999999887542 3578999999999999997 78998876
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.73 E-value=7e-17 Score=123.51 Aligned_cols=95 Identities=26% Similarity=0.417 Sum_probs=76.5
Q ss_pred cCCCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCc-ccCCC----------------ceeeeccC
Q 030371 48 INQPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETT-EASFG----------------KEIVSYES 109 (178)
Q Consensus 48 ~~~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~-~~~~g----------------~~~~~Y~~ 109 (178)
...|.|+|+..+ .+++|+|+|+|||+|.. ..|+||+++||+.+. ....| .....|.|
T Consensus 25 ~~SP~l~w~~~p~~t~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~g 99 (150)
T cd00865 25 NVSPPLSWSGVPAGTKSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGG 99 (150)
T ss_pred CcCCCeEEcCCCCCCeEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecC
Confidence 358999999874 68999999999999832 489999999999862 11111 24689999
Q ss_pred CCCCC-CCCcEEEEEeeeCCccccCCCCCCCCCCHHHHHHHhCC
Q 030371 110 PRPTV-GIHRFVFVLFRQHVKQNVCAPGWRQNFSCKDFAELYNL 152 (178)
Q Consensus 110 P~P~~-G~HRYvflL~~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L 152 (178)
|+|+. +.|||+|.||+++..+.+ ..+++..+++++..-
T Consensus 100 P~Pp~~~~HrY~f~vyAld~~l~~-----~~~~~~~~l~~ai~~ 138 (150)
T cd00865 100 PCPPDGGPHRYVFTVYALDVPLLL-----PPGATRAELLFAMKG 138 (150)
T ss_pred CCCcCCCceEEEEEEEEeCCccCC-----CCCCCHHHHHHHHhh
Confidence 99996 899999999999998765 367888888888654
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.69 E-value=7.3e-16 Score=118.85 Aligned_cols=93 Identities=22% Similarity=0.378 Sum_probs=70.4
Q ss_pred CCCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCccc-----C-------CCc-------eeeecc
Q 030371 49 NQPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTEA-----S-------FGK-------EIVSYE 108 (178)
Q Consensus 49 ~~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~~-----~-------~g~-------~~~~Y~ 108 (178)
..|.|+|++.+ .+++|+|+|.|||+|.. ..|+||+++|||++... . .|. ....|.
T Consensus 30 ~SP~L~w~~~P~~t~s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~ 104 (158)
T PRK10257 30 ISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYG 104 (158)
T ss_pred CCceEEEcCCCCCceEEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCc
Confidence 37999999874 47999999999999874 26999999999976210 0 011 146899
Q ss_pred CCCCCCC-CCcEEEEEeeeC-CccccCCCCCCCCCCHHHHHHHhC
Q 030371 109 SPRPTVG-IHRFVFVLFRQH-VKQNVCAPGWRQNFSCKDFAELYN 151 (178)
Q Consensus 109 ~P~P~~G-~HRYvflL~~Q~-~~~~~~~~~~R~~Fn~~~F~~~~~ 151 (178)
||+||.| .|||+|.||+++ ..+.+. .+++..++.++..
T Consensus 105 GP~PP~g~~HrY~f~vyALd~~~L~l~-----~~~~~~~l~~a~~ 144 (158)
T PRK10257 105 GAAPPKGETHRYIFTVHALDVERIDVD-----EGASGAMVGFNVH 144 (158)
T ss_pred CCCCccCCCceEEEEEEEecCcccCCC-----CCCCHHHHHHHHh
Confidence 9999987 799999999999 467653 3555666666554
No 8
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.68 E-value=5.1e-16 Score=117.77 Aligned_cols=94 Identities=29% Similarity=0.516 Sum_probs=74.1
Q ss_pred CCCeEEEecC-CCCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc-----cC-------CC--------ceeeec
Q 030371 49 NQPRVEIGGD-DLRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE-----AS-------FG--------KEIVSY 107 (178)
Q Consensus 49 ~~P~i~~~~~-~~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~-----~~-------~g--------~~~~~Y 107 (178)
..|.|+|+.. ..+++|+|+|+|||+|... .|+||+++||+.+.. .. .| -....|
T Consensus 14 ~SP~l~w~~~P~~t~s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y 88 (141)
T TIGR00481 14 ISPPLSWDGVPEGAKSLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGY 88 (141)
T ss_pred CCcEEEEcCCCCCceEEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccE
Confidence 4899999987 3579999999999998763 499999999997521 11 11 024699
Q ss_pred cCCCCCCCCCcEEEEEeeeCCc-cccCCCCCCCCCCHHHHHHHhCC
Q 030371 108 ESPRPTVGIHRFVFVLFRQHVK-QNVCAPGWRQNFSCKDFAELYNL 152 (178)
Q Consensus 108 ~~P~P~~G~HRYvflL~~Q~~~-~~~~~~~~R~~Fn~~~F~~~~~L 152 (178)
.||+||.|.|||+|.||+++.. +.+. .++...++.++..-
T Consensus 89 ~GP~PP~g~HrY~f~vyALd~~~l~l~-----~~~~~~~l~~ai~g 129 (141)
T TIGR00481 89 IGPCPPKGDHRYLFTVYALDTEKLDLD-----PGFSLADLGDAMEG 129 (141)
T ss_pred eCCCCcCCCEEEEEEEEEecCCCCCCC-----CCCCHHHHHHHHhh
Confidence 9999999889999999999976 7653 47888888887654
No 9
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.65 E-value=5.2e-15 Score=116.54 Aligned_cols=112 Identities=26% Similarity=0.420 Sum_probs=79.0
Q ss_pred EEEEECCeecCCCcccCcccc---------cCCCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCc
Q 030371 27 LMVTYSGKDVKNGCELKPSAV---------INQPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETT 96 (178)
Q Consensus 27 L~V~f~~~~V~~G~~l~~~~~---------~~~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~ 96 (178)
|.|+ +..+..|..|+...+ ...|.++|++.+ .+++|+|+|.|||+|.. ..|+||+++|||++.
T Consensus 22 ~~lt--S~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~DpDaP~g-----~~~~HWvv~nIP~~~ 94 (183)
T PRK09818 22 FQVT--SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTG-----SGWWHWTVANIPATV 94 (183)
T ss_pred EEEE--CcCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEECCCCCCC-----CcEEEEEEEcCCCCc
Confidence 5553 345567777775432 248999999874 57999999999999875 269999999999752
Q ss_pred cc-------------CCCc-------eeeeccCCCCCCC--CCcEEEEEeeeC-CccccCCCCCCCCCCHHHHHHHh
Q 030371 97 EA-------------SFGK-------EIVSYESPRPTVG--IHRFVFVLFRQH-VKQNVCAPGWRQNFSCKDFAELY 150 (178)
Q Consensus 97 ~~-------------~~g~-------~~~~Y~~P~P~~G--~HRYvflL~~Q~-~~~~~~~~~~R~~Fn~~~F~~~~ 150 (178)
.. ..|. ....|.||+||.| .|||+|.||+.+ +.+.+. .++...++.++.
T Consensus 95 ~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~-----~~~~~~~l~~~~ 166 (183)
T PRK09818 95 TYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD-----SNSSGALVGYML 166 (183)
T ss_pred cccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC-----CCCCHHHHHHHH
Confidence 10 0011 2358999999965 899999999998 446553 344555555554
No 10
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=2.7e-15 Score=117.23 Aligned_cols=105 Identities=24% Similarity=0.484 Sum_probs=76.3
Q ss_pred eecCCCcccCccc----ccCCCeEEEecC-CCCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc------c----
Q 030371 34 KDVKNGCELKPSA----VINQPRVEIGGD-DLRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE------A---- 98 (178)
Q Consensus 34 ~~V~~G~~l~~~~----~~~~P~i~~~~~-~~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~------~---- 98 (178)
..+..|+.++..- ....|.++|++. ..+++|+|+|.|||||+. ..|+||++.||+++.. .
T Consensus 28 ~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~~~~ 102 (174)
T COG1881 28 NAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGPKSK 102 (174)
T ss_pred hhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEECCCCCCC-----CcEEEEEEEccCCcccccccccccccc
Confidence 4566777766554 356888999987 468999999999999974 4899999999997311 0
Q ss_pred --------CCCceeeeccCCCCCCCC-CcEEEEEeeeCCccccCCCCCCCCCCHHHHHHH
Q 030371 99 --------SFGKEIVSYESPRPTVGI-HRFVFVLFRQHVKQNVCAPGWRQNFSCKDFAEL 149 (178)
Q Consensus 99 --------~~g~~~~~Y~~P~P~~G~-HRYvflL~~Q~~~~~~~~~~~R~~Fn~~~F~~~ 149 (178)
+.|. ..|.||+||.|. |||.|.||+++-..... -.+|+..++.+.
T Consensus 103 ~~~~qg~Nd~g~--~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~----~~g~~~~~~~~~ 156 (174)
T COG1881 103 IGIVQGINDFGS--RGYGGPCPPKGHGHRYYFTVYALDVELLLL----PAGASGAELGKA 156 (174)
T ss_pred cceEEeeccccc--cCcccCCCCCCCCeEEEEEEEEcccccccC----CCCCCHHHHHHH
Confidence 1122 459999999876 99999999999764321 145555554443
No 11
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=42.71 E-value=28 Score=30.79 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=32.0
Q ss_pred ccCcccccCCCeEEE--ecCCCCceEEEEEECCCCCCCCCCCCcceEE---EEEEcc
Q 030371 41 ELKPSAVINQPRVEI--GGDDLRTFYTLVMVDPDAPSPSDPGLREYLH---WLVTDI 92 (178)
Q Consensus 41 ~l~~~~~~~~P~i~~--~~~~~~~~ytlvmiDpDap~~~~~~~~~~lH---wlv~ni 92 (178)
+++++-=...|+|++ .+.++.+.|.|+| | .-.-++..|+...| ||+++=
T Consensus 101 IITKsGRRMFPTvrV~~~GldP~a~Y~vlm-D--vVPvD~KRYRYayH~S~WlvAGk 154 (437)
T KOG3586|consen 101 IITKSGRRMFPTVRVKFSGLDPMADYYVLM-D--VVPVDSKRYRYAYHSSSWLVAGK 154 (437)
T ss_pred EEecccccccceEEEEEecCCcccceEEEE-e--EEecccceeeeeecccceeeecC
Confidence 366666678999754 5667788886665 3 22233455777776 998763
No 12
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=34.01 E-value=21 Score=20.84 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=11.6
Q ss_pred eeCCCCCccccccC
Q 030371 164 QRETGSSASRRPVK 177 (178)
Q Consensus 164 ~~d~~~~~~~~~~~ 177 (178)
.|+.-..+.|||||
T Consensus 8 rwgkp~g~KRRPvK 21 (39)
T PF00976_consen 8 RWGKPVGRKRRPVK 21 (39)
T ss_pred eccCCCCcccCcce
Confidence 47777889999997
No 13
>PRK04243 50S ribosomal protein L15e; Validated
Probab=28.34 E-value=71 Score=25.56 Aligned_cols=29 Identities=24% Similarity=0.666 Sum_probs=21.5
Q ss_pred CceEEEEEECCCCCCCCCCCCcceEEEEEEcc
Q 030371 61 RTFYTLVMVDPDAPSPSDPGLREYLHWLVTDI 92 (178)
Q Consensus 61 ~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni 92 (178)
-+.|-+||+||.-|.-.+. .-+.|+....
T Consensus 127 yK~fEVIlVDp~H~aIr~D---p~~nWI~~~~ 155 (196)
T PRK04243 127 YKWYEVILVDPHHPAIKND---PDLNWICDKS 155 (196)
T ss_pred cccEEEEEecCCCcchhcC---cccceecccc
Confidence 4789999999998874332 5688988543
No 14
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=25.35 E-value=83 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.594 Sum_probs=21.5
Q ss_pred CceEEEEEECCCCCCCCCCCCcceEEEEEEcc
Q 030371 61 RTFYTLVMVDPDAPSPSDPGLREYLHWLVTDI 92 (178)
Q Consensus 61 ~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni 92 (178)
-+.|-+||+||.-|.-.+. .-+.|+....
T Consensus 127 yK~yEVILvDp~H~aIr~D---p~~nWI~~~~ 155 (204)
T PTZ00026 127 YKFYEVILVDPFHNAIRND---PRINWICNPV 155 (204)
T ss_pred cccEEEEEecCCCccceeC---cccceecccc
Confidence 4889999999998774322 5688988643
Done!