Query 030371
Match_columns 178
No_of_seqs 129 out of 1190
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 100.0 1E-53 3.5E-58 335.1 18.2 167 1-167 8-175 (180)
2 3axy_A Protein heading DATE 3A 100.0 6.2E-53 2.1E-57 328.0 18.6 166 1-167 5-170 (170)
3 2iqy_A Phosphatidylethanolamin 100.0 1.4E-48 4.7E-53 308.4 16.7 170 4-175 4-186 (190)
4 2jyz_A CG7054-PA, GH14779P, PE 100.0 1.9E-47 6.6E-52 299.3 14.5 164 11-176 2-177 (179)
5 2gzq_A Phosphatidylethanolamin 100.0 3.2E-45 1.1E-49 291.2 13.0 163 2-166 12-200 (200)
6 1wpx_B Carboxypeptidase Y inhi 100.0 1.7E-44 5.7E-49 290.8 13.3 162 4-166 12-220 (220)
7 1fux_A Hypothetical 19.5 kDa p 99.9 1.5E-21 5E-26 150.7 12.6 117 33-160 7-156 (166)
8 3n08_A Putative phosphatidylet 99.9 7.9E-21 2.7E-25 144.7 15.6 121 36-163 11-148 (153)
9 1fjj_A Hypothetical 17.1 kDa p 99.8 1.3E-20 4.5E-25 144.5 12.3 93 48-150 30-144 (159)
10 2evv_A Hypothetical protein HP 99.8 2.4E-19 8.2E-24 142.5 9.6 109 49-166 59-200 (207)
11 3ewt_E Tumor necrosis factor r 24.8 27 0.00092 17.8 0.9 11 142-152 15-25 (25)
12 1ffk_I Ribosomal protein L15E; 22.9 50 0.0017 25.2 2.5 27 61-90 126-152 (194)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=100.00 E-value=1e-53 Score=335.13 Aligned_cols=167 Identities=60% Similarity=0.995 Sum_probs=155.9
Q ss_pred CCCCCCccccCCcccccCCCCCCCeeEEEEECCeecCCCcccCcccccCCCeEEEecCCCCceEEEEEECCCCCCCCCCC
Q 030371 1 MSGDRDPLVIGRVVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRTFYTLVMVDPDAPSPSDPG 80 (178)
Q Consensus 1 ~~~~~~~l~~~~Iipdvl~~f~P~~~L~V~f~~~~V~~G~~l~~~~~~~~P~i~~~~~~~~~~ytlvmiDpDap~~~~~~ 80 (178)
|+.+.++|++++||||+|+.|.|+..|+|+|++..|.+|+.|+++++..+|+|+|++.+.+++|||+|+|||+|++.+++
T Consensus 8 ~~~~~~~l~~~~vipdvl~~f~P~~~l~V~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~~~p~ 87 (180)
T 1wko_A 8 GTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPF 87 (180)
T ss_dssp --CTTHHHHHTTHHHHTBCCCCCCSEEEEEETTEECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBTTBCT
T ss_pred HHHHHHHHHhCCCCCCccCCcCCCeeEEEEECCeEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCCccCC
Confidence 67889999999999999999999999999999999999999999999999999999876567999999999999999999
Q ss_pred CcceEEEEEEccCCCcccCCCceeeeccCCCCCCCCCcEEEEEeeeCCccccCC-CCCCCCCCHHHHHHHhCCCCceEEE
Q 030371 81 LREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVFVLFRQHVKQNVCA-PGWRQNFSCKDFAELYNLGSPVAAV 159 (178)
Q Consensus 81 ~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvflL~~Q~~~~~~~~-~~~R~~Fn~~~F~~~~~L~~Pva~~ 159 (178)
+++|+|||++||+++.+...|..+++|.||+|++|.|||+|+||+|+..+.+.+ +..|.+||+++|+++++|+.|||+|
T Consensus 88 ~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRYvf~ly~q~~~l~~~~~~~~R~~F~~~~F~~~~~Lg~PVa~~ 167 (180)
T 1wko_A 88 LKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAV 167 (180)
T ss_dssp TCCEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECCTTCCCCCCCCCSTTCCHHHHHHHTTCCSEEEEE
T ss_pred CccEEEEEEeccCcCccccCCceeeeeCCCCCCCCceEEEEEEEecCCccCCCCCccccCCcCHHHHHHHhCCCCcEEEE
Confidence 999999999999998655678999999999999999999999999999887765 6789999999999999999999999
Q ss_pred EEEEeeCC
Q 030371 160 YFNCQRET 167 (178)
Q Consensus 160 ~f~~~~d~ 167 (178)
||++|||+
T Consensus 168 fF~~q~d~ 175 (180)
T 1wko_A 168 FFNAQRET 175 (180)
T ss_dssp EEEECCC-
T ss_pred EEEEEECC
Confidence 99999998
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=100.00 E-value=6.2e-53 Score=328.02 Aligned_cols=166 Identities=77% Similarity=1.257 Sum_probs=157.4
Q ss_pred CCCCCCccccCCcccccCCCCCCCeeEEEEECCeecCCCcccCcccccCCCeEEEecCCCCceEEEEEECCCCCCCCCCC
Q 030371 1 MSGDRDPLVIGRVVGDVLDNFTRTIPLMVTYSGKDVKNGCELKPSAVINQPRVEIGGDDLRTFYTLVMVDPDAPSPSDPG 80 (178)
Q Consensus 1 ~~~~~~~l~~~~Iipdvl~~f~P~~~L~V~f~~~~V~~G~~l~~~~~~~~P~i~~~~~~~~~~ytlvmiDpDap~~~~~~ 80 (178)
|+. +++|++++||||||+.|.|+..|+|+|++..|.+|+.|+++++..+|+|+|++.+.+++|||+|+|||+|++.+++
T Consensus 5 m~~-~~~l~~~~vipdvl~~F~P~~~l~v~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~~~p~ 83 (170)
T 3axy_A 5 MRD-RDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPN 83 (170)
T ss_dssp CCT-TCHHHHTTHHHHTBCCCCCCSCEEEEETTEECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCTTSCT
T ss_pred cch-hchhhhCCccccccCCcCCceEEEEEECCeEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCCccCC
Confidence 653 8999999999999999999999999999999999999999999999999999876689999999999999999999
Q ss_pred CcceEEEEEEccCCCcccCCCceeeeccCCCCCCCCCcEEEEEeeeCCccccCCCCCCCCCCHHHHHHHhCCCCceEEEE
Q 030371 81 LREYLHWLVTDIPETTEASFGKEIVSYESPRPTVGIHRFVFVLFRQHVKQNVCAPGWRQNFSCKDFAELYNLGSPVAAVY 160 (178)
Q Consensus 81 ~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvflL~~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~~Pva~~~ 160 (178)
+++|+|||++||+++.+...|+.+++|.||+|++|.|||+|+||+|+..+++.++..|.+||+++|+++++|+.|||+||
T Consensus 84 ~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRY~f~ly~q~~~l~~~~p~~R~~F~~~~F~~~~~Lg~Pva~~f 163 (170)
T 3axy_A 84 LREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163 (170)
T ss_dssp TCSEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCCCCCCCSCSTTCCHHHHHHHTTCCSCSEEEE
T ss_pred CccEEEEEEeCCCCCccccCCceeceecCCCCCCCcEEEEEEEEecCCccCCCCccccCCcCHHHHHHHhCCCCcEEEEE
Confidence 99999999999999866677889999999999999999999999999998887788999999999999999999999999
Q ss_pred EEEeeCC
Q 030371 161 FNCQRET 167 (178)
Q Consensus 161 f~~~~d~ 167 (178)
|++|||.
T Consensus 164 F~~q~d~ 170 (170)
T 3axy_A 164 FNSQREA 170 (170)
T ss_dssp EEECCCC
T ss_pred EEEEecC
Confidence 9999984
No 3
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=100.00 E-value=1.4e-48 Score=308.41 Aligned_cols=170 Identities=29% Similarity=0.506 Sum_probs=156.5
Q ss_pred CCCcccc--CCcccccCCCCCCCeeEEEEE-CCeecCCCcccCcccccCCCe-EEEecCCCCceEEEEEECCCCCCCCCC
Q 030371 4 DRDPLVI--GRVVGDVLDNFTRTIPLMVTY-SGKDVKNGCELKPSAVINQPR-VEIGGDDLRTFYTLVMVDPDAPSPSDP 79 (178)
Q Consensus 4 ~~~~l~~--~~Iipdvl~~f~P~~~L~V~f-~~~~V~~G~~l~~~~~~~~P~-i~~~~~~~~~~ytlvmiDpDap~~~~~ 79 (178)
+.++|++ ++||||||+. .|+..|+|+| ++..|.+|+.|+++++...|+ |+|++.+.+++|||+|+|||+|++.++
T Consensus 4 ~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~~~p 82 (190)
T 2iqy_A 4 MAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDP 82 (190)
T ss_dssp SSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCSSSC
T ss_pred HHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCCCCC
Confidence 4688999 9999999998 9999999999 557899999999999999999 999987657999999999999999999
Q ss_pred CCcceEEEEEEccCCCcccCCCceeeeccCCCCC--CCCCcEEEEEeeeCCccccCC-------CCCCCCCCHHHHHHHh
Q 030371 80 GLREYLHWLVTDIPETTEASFGKEIVSYESPRPT--VGIHRFVFVLFRQHVKQNVCA-------PGWRQNFSCKDFAELY 150 (178)
Q Consensus 80 ~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRYvflL~~Q~~~~~~~~-------~~~R~~Fn~~~F~~~~ 150 (178)
++++|+|||++||+++ +...|..+++|.||+|+ +|.|||+|+||+|+..+++.+ +..|.+||+++|++++
T Consensus 83 ~~~~~~HWlv~nIp~~-~~~~G~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~~l~~~~~~~R~~F~~~~F~~~~ 161 (190)
T 2iqy_A 83 KFREWHHFLVVNMKGN-DISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKY 161 (190)
T ss_dssp TTCCEEEEEEEEEETT-BGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCSCCBCTTCCTTCSSCCHHHHHHHT
T ss_pred CcCCEEEEEEeCCChh-ccccCccccceeCCCCcCCCCceEEEEEEEEeCCccCcchhhccCCCcccCCCcCHHHHHHHh
Confidence 9999999999999988 66779999999999999 568999999999999876542 4689999999999999
Q ss_pred CCCCceEEEEEEEeeCCCCCccccc
Q 030371 151 NLGSPVAAVYFNCQRETGSSASRRP 175 (178)
Q Consensus 151 ~L~~Pva~~~f~~~~d~~~~~~~~~ 175 (178)
+|+.|||+|||++|||+++..+++.
T Consensus 162 ~Lg~pVA~~fF~~q~d~~v~~~~~~ 186 (190)
T 2iqy_A 162 HLGAPVAGTCFQAEWDDSVPKLHDQ 186 (190)
T ss_dssp TCCSCSEEEEEEECCCTTHHHHHHH
T ss_pred CCCCeeEEEEEEEEccCchHHHHHH
Confidence 9999999999999999999888764
No 4
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-47 Score=299.31 Aligned_cols=164 Identities=38% Similarity=0.644 Sum_probs=148.9
Q ss_pred CCcccccCCCCCCCeeEEEEEC-CeecCCCcccCcccccCCCeEEEecCCC-CceEEEEEECCCCCCCCCCCCcceEEEE
Q 030371 11 GRVVGDVLDNFTRTIPLMVTYS-GKDVKNGCELKPSAVINQPRVEIGGDDL-RTFYTLVMVDPDAPSPSDPGLREYLHWL 88 (178)
Q Consensus 11 ~~Iipdvl~~f~P~~~L~V~f~-~~~V~~G~~l~~~~~~~~P~i~~~~~~~-~~~ytlvmiDpDap~~~~~~~~~~lHwl 88 (178)
++||||||+. .|+..|+|+|+ +..|.+|+.|+++++...|+|+|++.+. +++|||+|+|||+|++.++++++|+|||
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWl 80 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWS 80 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCE
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEE
Confidence 6899999999 99999999996 4789999999999999999999998743 4999999999999999999999999999
Q ss_pred EEccCCCc-ccCCCceeeeccCCCCC--CCCCcEEEEEeeeCCccccC-------CCCCCCCCCHHHHHHHhCCCCceEE
Q 030371 89 VTDIPETT-EASFGKEIVSYESPRPT--VGIHRFVFVLFRQHVKQNVC-------APGWRQNFSCKDFAELYNLGSPVAA 158 (178)
Q Consensus 89 v~ni~~~~-~~~~g~~~~~Y~~P~P~--~G~HRYvflL~~Q~~~~~~~-------~~~~R~~Fn~~~F~~~~~L~~Pva~ 158 (178)
++||+++. +...|..+++|.||+|+ +|.|||+|+||+|+..++ . .+..|.+||+++|+++++|+.|||+
T Consensus 81 v~nIp~~~~~l~~g~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~-~~~~l~~~~~~~R~~F~~~~F~~~~~Lg~pvA~ 159 (179)
T 2jyz_A 81 VVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTISNTTRTGRLNFNARDFAAKHGLGEPIAA 159 (179)
T ss_dssp EECCCTTSSSTTSSEEEECCCSCCSCGGGCSEEEEEEEEEECSCCC-CSSCBCTTCCSSSCCCCTHHHHHHTTCCSCSEE
T ss_pred EECCCCCccccCcccccccccCCCCCCCCCceEEEEEEEEcCCcCC-chhhccCCCcccCCCcCHHHHHHHhCCCCccEE
Confidence 99999874 45678999999999999 568999999999998776 2 2468999999999999999999999
Q ss_pred EEEEEeeCCCCCcccccc
Q 030371 159 VYFNCQRETGSSASRRPV 176 (178)
Q Consensus 159 ~~f~~~~d~~~~~~~~~~ 176 (178)
|||++|||+++..+|...
T Consensus 160 ~~F~~q~d~~v~~~~~~~ 177 (179)
T 2jyz_A 160 NYYQAQYDDYVPIRNKTI 177 (179)
T ss_dssp EEEEECCCTHHHHHHHTC
T ss_pred EEEEEEecCchHHHHHHh
Confidence 999999999998877543
No 5
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=100.00 E-value=3.2e-45 Score=291.21 Aligned_cols=163 Identities=25% Similarity=0.456 Sum_probs=143.5
Q ss_pred CCCCCccccCCcccccCC--CCCCCeeEEEEEC-CeecCCCcccCcccccCCCe-EEEecCC-CCceEEEEEECCCCCCC
Q 030371 2 SGDRDPLVIGRVVGDVLD--NFTRTIPLMVTYS-GKDVKNGCELKPSAVINQPR-VEIGGDD-LRTFYTLVMVDPDAPSP 76 (178)
Q Consensus 2 ~~~~~~l~~~~Iipdvl~--~f~P~~~L~V~f~-~~~V~~G~~l~~~~~~~~P~-i~~~~~~-~~~~ytlvmiDpDap~~ 76 (178)
+.++++|++++||||||| .|+|++.|+|+|+ +..|.+|+.|+++++.+.|+ |+|++.+ .+++|||+|+|||||++
T Consensus 12 ~~~~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~ 91 (200)
T 2gzq_A 12 PPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSR 91 (200)
T ss_dssp SCCHHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCS
T ss_pred HHHHHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCC
Confidence 356889999999999996 4999999999997 68999999999999999999 9999874 47999999999999999
Q ss_pred CCCCCcceEEEEEEccCCCcccCCC-----ceeeeccCCCCC--CCCCcEEEEEe--eeCCccccCC---C-----CCCC
Q 030371 77 SDPGLREYLHWLVTDIPETTEASFG-----KEIVSYESPRPT--VGIHRFVFVLF--RQHVKQNVCA---P-----GWRQ 139 (178)
Q Consensus 77 ~~~~~~~~lHwlv~ni~~~~~~~~g-----~~~~~Y~~P~P~--~G~HRYvflL~--~Q~~~~~~~~---~-----~~R~ 139 (178)
.++++++|||||++||+++. ...| ..+++|.||+|+ +|.|||+|+|| +|++.+++.. . ..|.
T Consensus 92 ~~~~~~~~~HWlv~nIp~~~-~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRYvF~l~~fkQ~~~~~~~~~p~~~~~~~~~R~ 170 (200)
T 2gzq_A 92 RRPDGRDYVHWAVSGIKSKE-LVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRV 170 (200)
T ss_dssp SCCTTCSEEEEEEEEECSSE-EETTCCTTCEEEECCCCCCCCTTSCCEEEEEEEEEEEGGGTTCBTTBCCCCCGGGCCTT
T ss_pred CCCCCCCEEEEEEeCCCcCc-ccCCccCCCcceeeeeCCCCcCCCCcceEEEEEEEecccCcccccccCccccccccccC
Confidence 99999999999999999873 2233 379999999997 57899999985 9998876532 1 3799
Q ss_pred CCCHH----HHHHHhCCCCceEEEEEEEeeC
Q 030371 140 NFSCK----DFAELYNLGSPVAAVYFNCQRE 166 (178)
Q Consensus 140 ~Fn~~----~F~~~~~L~~Pva~~~f~~~~d 166 (178)
+||++ +|++++|| .|||+|||++|++
T Consensus 171 ~F~~~~gv~~F~~~~gL-~pVganfF~~~n~ 200 (200)
T 2gzq_A 171 KFNNCQSAYNVIQMNDM-KIVGFNWCQMRRK 200 (200)
T ss_dssp HHHHTCCHHHHHHHTTC-EEEEEEEEEEECC
T ss_pred ccccchhhHHHHHHcCC-EEEEEEEEEEecC
Confidence 99997 89999999 6899999999974
No 6
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=100.00 E-value=1.7e-44 Score=290.83 Aligned_cols=162 Identities=28% Similarity=0.443 Sum_probs=143.2
Q ss_pred CCCccccCCcccccCCC--CCCCeeEEEEECC-eecCCCcccCcccccCCCeEEEec----------C-----CCCceEE
Q 030371 4 DRDPLVIGRVVGDVLDN--FTRTIPLMVTYSG-KDVKNGCELKPSAVINQPRVEIGG----------D-----DLRTFYT 65 (178)
Q Consensus 4 ~~~~l~~~~Iipdvl~~--f~P~~~L~V~f~~-~~V~~G~~l~~~~~~~~P~i~~~~----------~-----~~~~~yt 65 (178)
++++|++++||||||+. |.|+..|+|+|++ ..|.+|+.|+++++...|+|+|.. . ..+++|+
T Consensus 12 ~~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~~~ 91 (220)
T 1wpx_B 12 SIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFT 91 (220)
T ss_dssp HHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCEE
T ss_pred HHHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCceEE
Confidence 46899999999999998 9999999999986 779999999999999999999882 2 2579999
Q ss_pred EEEECCCCCCCCCCCCcceEEEEEEccCCCcc---------------c-CCC-ceeeeccCCCCC--CCCCcEEEEEeee
Q 030371 66 LVMVDPDAPSPSDPGLREYLHWLVTDIPETTE---------------A-SFG-KEIVSYESPRPT--VGIHRFVFVLFRQ 126 (178)
Q Consensus 66 lvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~---------------~-~~g-~~~~~Y~~P~P~--~G~HRYvflL~~Q 126 (178)
|+|+|||||++.++++++|+||+++||+++.. . +.| ...++|.||+|+ +|.|||+|+||+|
T Consensus 92 lvm~DpDaP~~~~p~~~~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~f~lya~ 171 (220)
T 1wpx_B 92 LVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQ 171 (220)
T ss_dssp EEEEESSSSCSSCCTTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEEC
T ss_pred EEEECCCCCCCCCCCcCcEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEEEEEEec
Confidence 99999999999999999999999999997521 0 235 688999999999 4689999999999
Q ss_pred CCcccc---CCCCCCCCCC-------HHHHHHHhCCCCceEEEEEEEeeC
Q 030371 127 HVKQNV---CAPGWRQNFS-------CKDFAELYNLGSPVAAVYFNCQRE 166 (178)
Q Consensus 127 ~~~~~~---~~~~~R~~Fn-------~~~F~~~~~L~~Pva~~~f~~~~d 166 (178)
+..+++ ..+..|.+|| +++|++++|| .|||+|||++||+
T Consensus 172 ~~~l~~~~~~~~~~R~~f~~~~~~f~~~~F~~~~~L-~pVAanfF~~q~~ 220 (220)
T 1wpx_B 172 PKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVASNFFYAETK 220 (220)
T ss_dssp CTTCCGGGSCCCCCSBGGGCCSSSCSHHHHHHTTTC-EEEEEEEEEECCC
T ss_pred CCcCCccccCCcccccCCCccccchhHHHHHHHhCC-eEEEEEEEEEecC
Confidence 998764 3467788888 9999999999 7899999999996
No 7
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.87 E-value=1.5e-21 Score=150.74 Aligned_cols=117 Identities=24% Similarity=0.404 Sum_probs=88.6
Q ss_pred CeecCCCcccCcccccC---------CCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc-cCCC
Q 030371 33 GKDVKNGCELKPSAVIN---------QPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE-ASFG 101 (178)
Q Consensus 33 ~~~V~~G~~l~~~~~~~---------~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~-~~~g 101 (178)
+..+..|+.|++..+.. .|.|+|++.+ .+++|+|+|+|||||++ +.|+||+++|||++.. ...|
T Consensus 7 S~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g 81 (166)
T 1fux_A 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVD 81 (166)
T ss_dssp CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTT
T ss_pred ccCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCC-----CcEEEeEEeCcCCCcccccCC
Confidence 34677899999988776 9999999874 57999999999999965 4799999999997631 1111
Q ss_pred ------------c-------eeeeccCCCCCCC--CCcEEEEEeeeCC-ccccCCCCCCCCCCHHHHHHHhCCCCceEEE
Q 030371 102 ------------K-------EIVSYESPRPTVG--IHRFVFVLFRQHV-KQNVCAPGWRQNFSCKDFAELYNLGSPVAAV 159 (178)
Q Consensus 102 ------------~-------~~~~Y~~P~P~~G--~HRYvflL~~Q~~-~~~~~~~~~R~~Fn~~~F~~~~~L~~Pva~~ 159 (178)
. ..+.|.||+||.| .|||+|+||+|+. .+.+. .++...++.+...-.. +|-.
T Consensus 82 ~~~~~~~~l~~g~~~g~nd~g~~~Y~GP~PP~g~g~HRY~F~lyald~~~l~l~-----~~~~~~~l~~a~~ghv-l~~a 155 (166)
T 1fux_A 82 AGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVD-----SNSSGALVGYMLNANK-IATA 155 (166)
T ss_dssp TTCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECEEEEEEESCSCCCCC-----TTCCHHHHHHHHHTTE-EEEE
T ss_pred ccccccccCCCCcEEeecCCCCccccCCCCcCCCCcEEEEEEEeEeccccCCCC-----CCCCHHHHHHHhhcCe-EEEE
Confidence 1 3689999999965 8999999999997 57653 4677777766654322 4443
Q ss_pred E
Q 030371 160 Y 160 (178)
Q Consensus 160 ~ 160 (178)
-
T Consensus 156 ~ 156 (166)
T 1fux_A 156 E 156 (166)
T ss_dssp E
T ss_pred E
Confidence 3
No 8
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=99.86 E-value=7.9e-21 Score=144.74 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=89.2
Q ss_pred cCCCcccCccc----ccCCCeEEEecCC-CCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc-cCCC--------
Q 030371 36 VKNGCELKPSA----VINQPRVEIGGDD-LRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE-ASFG-------- 101 (178)
Q Consensus 36 V~~G~~l~~~~----~~~~P~i~~~~~~-~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~-~~~g-------- 101 (178)
+..|..|+..- -...|.|+|++.+ .+++|+|+|+|||||++.++ .+.|+||+++||+++.+ ...|
T Consensus 11 f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~tks~ali~~DpDAPs~~~~-~~~~~HWvv~nIp~~~~~l~~g~~~g~~~g 89 (153)
T 3n08_A 11 FSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVRE-DGLWIHWIVYNLSPVVSNLAEGAQIFAVQG 89 (153)
T ss_dssp BCTTEECCGGGSTTSCCCCCCEEEECCCTTCCEEEEEEEETTSCTTTCT-TSCEEEEEEEEECTTCCEECTTCCCSSEEC
T ss_pred cCCCCCCCHHHcCCCCCcCcEEEEcCCCCCCeEEEEEEECCCCCCccCC-CCcEEEEEEEcCCCCcccccCCCCCCceEe
Confidence 34454444432 2458899999874 47999999999999988765 46899999999998631 1111
Q ss_pred c---eeeeccCCCCCCCCCcEEEEEeeeCCccccCCCCCCCCCCHHHHHHHhCCCCceEEEEEEE
Q 030371 102 K---EIVSYESPRPTVGIHRFVFVLFRQHVKQNVCAPGWRQNFSCKDFAELYNLGSPVAAVYFNC 163 (178)
Q Consensus 102 ~---~~~~Y~~P~P~~G~HRYvflL~~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~~Pva~~~f~~ 163 (178)
. ....|.||+||.|.|||+|+||+|+..+.+. .++...++.+...-.. +|-.-...
T Consensus 90 ~n~~g~~~Y~GP~PP~g~HrY~F~vyAld~~L~l~-----~~~~~~~l~~a~~ghv-l~~a~l~g 148 (153)
T 3n08_A 90 LNTAGEIGYCPPCPPDAKHRYYFYAYALDVVLSDE-----EGVTKEQLLEAMDGHI-IATAELMG 148 (153)
T ss_dssp BCTTSSBSCCCCCCSSSCEEEEEEEEEESSCCCCC-----SSCCHHHHHHHHTTTE-EEEEEEEE
T ss_pred ecCCCCccccCCcCcCCCEEEEEEEEEECCcCCCC-----CCCCHHHHHHHhhhCe-EEEEEEEE
Confidence 1 3589999999999999999999999987653 4788888888776533 55444433
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.84 E-value=1.3e-20 Score=144.46 Aligned_cols=93 Identities=22% Similarity=0.392 Sum_probs=71.9
Q ss_pred cCCCeEEEecC-CCCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc-cCCCc------------------eeeec
Q 030371 48 INQPRVEIGGD-DLRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE-ASFGK------------------EIVSY 107 (178)
Q Consensus 48 ~~~P~i~~~~~-~~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~-~~~g~------------------~~~~Y 107 (178)
...|.|+|++. +.+++|+|+|+|||||+. +.|+||+++|||++.. ...|. ....|
T Consensus 30 n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g~~~~~~~~~~g~~~g~n~~g~~~Y 104 (159)
T 1fjj_A 30 NISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGY 104 (159)
T ss_dssp CCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTTGGGTSSCCCTTCEECBCTTSSBSC
T ss_pred CcCCeEEEcCCCCCCeEEEEEEECCCCCCC-----CcEEEEEEEccCCCccccCCCcccccccCCCCcEEeecCCCCCcc
Confidence 45888999987 457999999999999975 3799999999997631 11111 36899
Q ss_pred cCCCCCCC-CCcEEEEEeeeCC-ccccCCCCCCCCCCHHHHHHHh
Q 030371 108 ESPRPTVG-IHRFVFVLFRQHV-KQNVCAPGWRQNFSCKDFAELY 150 (178)
Q Consensus 108 ~~P~P~~G-~HRYvflL~~Q~~-~~~~~~~~~R~~Fn~~~F~~~~ 150 (178)
.||+||.| .|||+|+||+|+. .+.+. .++...++.+..
T Consensus 105 ~GP~PP~g~~HRY~F~lyald~~~l~l~-----~~~~~~~l~~a~ 144 (159)
T 1fjj_A 105 DGAAPPKGETHRYIFTVHALDIERIDVD-----EGASGAMVGFNV 144 (159)
T ss_dssp CCBCCSTTCCEEEEEEEEEESSSCCSCC-----TTCCHHHHHHHH
T ss_pred cCCCCcCCCceEEEEEEEEccCcccCCC-----CCCCHHHHHHHh
Confidence 99999988 8999999999997 57653 456666555443
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=99.79 E-value=2.4e-19 Score=142.52 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCeEEEecCCCCceEEEEEECCCCCCCCCCCCcceEEEEEEccCCCcc---------------cC----CCcee-----
Q 030371 49 NQPRVEIGGDDLRTFYTLVMVDPDAPSPSDPGLREYLHWLVTDIPETTE---------------AS----FGKEI----- 104 (178)
Q Consensus 49 ~~P~i~~~~~~~~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ni~~~~~---------------~~----~g~~~----- 104 (178)
..|.|+|++.+.+++|+|+|+|||||++. .++|+||+++||+.+.- .+ .|...
T Consensus 59 ~Sp~L~W~~~~gtks~aLvm~DPDAP~~~---g~~~~HWvv~NI~~~~l~eg~~~~~~g~~qG~N~~~~~~g~~~~~~~~ 135 (207)
T 2evv_A 59 YSPKISWQKVEGAQSYALELIDHDAQKVC---GMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESE 135 (207)
T ss_dssp CCCCEEECCCTTCSEEEEEEEETTHHHHH---SSCEEEEEEEEECSSEECTTHHHHCSSSEECCCTTCSCSTTCSSCHHH
T ss_pred ccceEEEecCCCCeEEEEEEECCCCCCCC---CCcEEEEEEeCCCCCccccCcccCCCCceecccccccccccccccccc
Confidence 34679998776689999999999999753 35899999999954310 01 23222
Q ss_pred --------eeccCCCCCCCCCcEEEEEeeeCC-ccccCCCCCCCCCCHHHHHHHhCCCCceEEEEEEEeeC
Q 030371 105 --------VSYESPRPTVGIHRFVFVLFRQHV-KQNVCAPGWRQNFSCKDFAELYNLGSPVAAVYFNCQRE 166 (178)
Q Consensus 105 --------~~Y~~P~P~~G~HRYvflL~~Q~~-~~~~~~~~~R~~Fn~~~F~~~~~L~~Pva~~~f~~~~d 166 (178)
..|.||+||.|.|||+|+||+|+. .+.+. .+|...++.+...-.. +|-.-+...+.
T Consensus 136 k~~~~~~~~~Y~GP~PP~G~HRYvF~vyALd~~~L~l~-----~~~~~~~l~~am~gHv-La~a~l~g~y~ 200 (207)
T 2evv_A 136 KQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALK-----APFFLGDLHDKMRNHI-IAIGRKEFLYK 200 (207)
T ss_dssp HHHHHHHTCSCCCCCCSSSCEEEEEEEEEESSSCCCCC-----SSCCHHHHHHHHTTCE-EEEEEEEEEEC
T ss_pred cccccccccccCCCCCCCCcEEEEEEEEEecCccCCCC-----CCCCHHHHHHHhhcCe-EEEEEEEEEEe
Confidence 889999999999999999999997 67653 5788888888776433 66555554443
No 11
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=24.81 E-value=27 Score=17.79 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=8.4
Q ss_pred CHHHHHHHhCC.
Q 030371 142 SCKDFAELYNL. 152 (178)
Q Consensus 142 n~~~F~~~~~L. 152 (178)
++.+|++++|+
T Consensus 15 ~Vk~fvR~~gi. 25 (25)
T 3ewt_E 15 QVKGFVRKNGVx 26 (26)
T ss_pred HHHHHHHHcCC.
Confidence 46788888875
No 12
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=22.95 E-value=50 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=20.1
Q ss_pred CceEEEEEECCCCCCCCCCCCcceEEEEEE
Q 030371 61 RTFYTLVMVDPDAPSPSDPGLREYLHWLVT 90 (178)
Q Consensus 61 ~~~ytlvmiDpDap~~~~~~~~~~lHwlv~ 90 (178)
-+.|-+|||||.-|.-.+. .-+.|+..
T Consensus 126 yK~yEVILVDp~H~aIr~D---p~~nWI~~ 152 (194)
T 1ffk_I 126 YKWFEVILVDRDHPAIKSD---PQLSWVSR 152 (194)
T ss_pred eeEEEEEEEcCCcHhhhcC---cccccccc
Confidence 3789999999998763322 46888876
Done!