BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030372
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 17 YDNMGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEA 76
YD G ++ C+ +R + D EVL+++S + + P GG E +E A
Sbjct: 4 YDREGFKKRAACLCFRSEQED---------EVLLVSSSRYPDQWIVPGGGMEPEEEPGGA 54
Query: 77 ALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWPEKDV---RQR 133
A+RE +EEAGV G + LG + + T Y++ L VTE LE W E V R+R
Sbjct: 55 AVREVYEEAGVKGKLGRLLGIFENQDRKHRT----YVYVLTVTEILEDW-EDSVNIGRKR 109
Query: 134 IWMSVAEA 141
W V +A
Sbjct: 110 EWFKVEDA 117
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 13 QLQRYDNMGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDET 72
Q + YD G ++ C+ +R ++ + EVL+++S + + P GG E +E
Sbjct: 30 QTRTYDGDGYKKRAACLCFRSESEE---------EVLLVSSSRHPDRWIVPGGGMEPEEE 80
Query: 73 VKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWPEKDV-- 130
AA+RE EEAGV G LG+ + +++ + Y++ L+VTE LE W E V
Sbjct: 81 PSVAAVREVCEEAGVKGT----LGRLVGIFENQERKHRTYVYVLIVTEVLEDW-EDSVNI 135
Query: 131 -RQRIWMSVAEA 141
R+R W + +A
Sbjct: 136 GRKREWFKIEDA 147
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 47 EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRG 106
EVL+++S + + P GG E +E AA+RE +EEAGV G + LG +++
Sbjct: 17 EVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLG---VFEQNQD 73
Query: 107 TFYEGYMFPLLVTEQLELWPEKDV---RQRIWMSVAEA 141
+ Y++ L VTE LE W E V R+R W V +A
Sbjct: 74 PEHRTYVYVLTVTELLEDW-EDSVSIGRKREWFKVEDA 110
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 34 KTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEH 93
K G + D EVL+I + S FPKG E E +E A+RE +EE GV G +
Sbjct: 3 KEFSAGGVLFKDGEVLLIKTP--SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILD 60
Query: 94 ELGKWNFLSKSRGT-FYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKE 152
+G+ ++ +G ++ + L+ ++ E P +V+ + + EA++ ++ KE
Sbjct: 61 YIGEIHYWYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKE 120
Query: 153 ALD 155
+
Sbjct: 121 IFE 123
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 38 GAGNVVDDI--EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
GAG VV + EVL++ + G +FPKG E E+++EAA+RE +EE GV V
Sbjct: 4 GAGGVVFNAKREVLLLRDRMGF--WVFPKGHPEPGESLEEAAVREVWEETGVRAEV 57
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 38/174 (21%)
Query: 24 QVVGCVPYRYKTGDGAGN------------VVDDIEVLVITSQKGSQGMMFPKGGWELDE 71
+ G + +R+K G N +D IEV ++ K +PKG E +E
Sbjct: 4 EAAGGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPK-YDDWSWPKGKLEQNE 62
Query: 72 TVKEAALRESFEEAG-------VMGNVEHELGK--------WNFLSKSRGTFYEGYMFPL 116
T + AA+RE EE G + VE+ L + + + ++ T Y P+
Sbjct: 63 THRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWXAQ-PI 121
Query: 117 LVTEQLELWPE---------KDVRQRIWMSVAEAREACRHGWMKEALDILVERL 161
+ L ++ +W+SV EAR+ H K+ L + V+R+
Sbjct: 122 SADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRV 175
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 63 PKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQL 122
P G E DET+ EAA RE +EE G+ +H + +++ + F ++F + + +
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR-FLFAIELEQIC 92
Query: 123 ELWP-EKDVRQRIWMSVAEAREA 144
P + D+ W+S E +A
Sbjct: 93 PTQPHDSDIDCCRWVSAEEILQA 115
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 38 GAGNVVDDI--EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
GAG VV + EVL++ + G +FPKG E E+++EAA+RE +E+ GV V
Sbjct: 4 GAGGVVFNAKREVLLLRDRMGF--WVFPKGHPEPGESLEEAAVREVWEQTGVRAEV 57
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 30 PYR--YKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGV 87
P++ + T D V D I ++ + G P G E DET+ +A +RE FEE +
Sbjct: 203 PFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNI 262
Query: 88 MGNVEHE 94
N+ HE
Sbjct: 263 --NLTHE 267
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 32 RYKTGDGA-GNVVDDI---EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAG 86
RYKT G ++ D+ + +++ K S G FPKG + DE+ + A+RE +EE G
Sbjct: 91 RYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETG 149
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 32 RYKTGDGA-GNVVDDI---EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAG 86
RYKT G ++ D+ + +++ K S G FPKG + DE+ + A+RE +EE G
Sbjct: 96 RYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETG 154
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 39 AGNVVDDI--EVLVITSQKGSQGM-MFPKGGWELDETVKEAALRESFEEAGV 87
AG V D+ ++LV+ + + M FP G E +E + + A+RE FEE G+
Sbjct: 30 AGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 44 DDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGV 87
+ IE L++ + G PKG E E E ALRE+ EEAG+
Sbjct: 22 NAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGI 65
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGV 87
G FP+GG E+ ++A RE FEE G+
Sbjct: 29 GQHSWQFPQGGINPGESAEQAMYRELFEEVGL 60
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 59 GMMFPKGGWELDETVKEAALRESFEEAGV 87
G FP G E DE E+ +RE +EE G+
Sbjct: 37 GYAFPGGHVENDEAFAESVIREIYEETGL 65
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 59 GMMFPKGGWELDETVKEAALRESFEEAGV 87
G FP G E+ E AA+RE FEE G+
Sbjct: 38 GHSFPGGHVEVGEPCATAAIREVFEETGL 66
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 44 DDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGV 87
+ IE L++ + G PKG E E E ALR + EEAG+
Sbjct: 27 NAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGI 70
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 92 EHELG---KWNFLSKSRGTFYEGYMFPLLVTEQLELWPEKDVRQ---RIWMSVAEAREAC 145
EH++G W +SK TF Y ++TE LE W E+ +Q R+W +AE
Sbjct: 314 EHDMGWEESWAIVSK---TF--AYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368
Query: 146 RHGWMKEALDILVERLSSRV 165
R ++ A D L E +R+
Sbjct: 369 R---LERAADGLDEETINRM 385
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 33 YKTGDGAGNVVDDIEVLVITSQKGSQGMMF-PKGGWELDETVKEAALRESFEEAGVMGNV 91
Y+T A +V E + + G F P G E ET +EA RE EE G+ +
Sbjct: 15 YQTRYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEI 74
Query: 92 EHELGKWN--FLSKSRGTFY--EGYMF 114
LG+ + F S R T Y GY +
Sbjct: 75 GCYLGEADEYFYSNHRQTAYYNPGYFY 101
>pdb|4GIW|A Chain A, Crystal Structure Of The Run Domain Of Human Nesca
pdb|4GIW|B Chain B, Crystal Structure Of The Run Domain Of Human Nesca
Length = 198
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 88 MGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELW 125
+G + ++ + LS SR F+ ++ LL T+QLELW
Sbjct: 100 LGTLYSQVSRLAPLSSSRSRFH-AFILGLLNTKQLELW 136
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 44 DDIEVLVITSQKGSQ-GMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102
DD +LV +G+ + P G E E++ +A RE EE G E G +++
Sbjct: 18 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC 77
Query: 103 KSRGTFYEGYMFPLLVTEQLELWPEKDVRQRI----WMSVAEAR 142
S GT Y + F V + P++ + I W S+ E R
Sbjct: 78 ASNGTTYLRFTFSGQV---VSFDPDRKLDTGIVRAAWFSIDEIR 118
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 62 FPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQ 121
FP G E ET + A +RE EE GV L F S S TF+ + PL
Sbjct: 39 FPGGKLEPGETPEAALVRELAEELGVDTRASC-LAPLAFASHSYDTFH--LLXPLYAC-- 93
Query: 122 LELWPEKDVRQRIWMSVAEAREACRHGWMK 151
R W A ARE W++
Sbjct: 94 -----------RSWRGRATAREGQTLAWVR 112
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGV 87
G FP+GG E+ ++A R FEE G+
Sbjct: 29 GQHSWQFPQGGINPGESAEQAMYRALFEEVGL 60
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
G + FP G + ET + AALRE EE G G++
Sbjct: 75 GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDI 110
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
G + FP G + ET + AALRE EE G G++
Sbjct: 76 GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDI 111
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 42 VVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRE-SFEEAGVMGNVEHEL 95
+ DD ++++ + + + FPKG WEL V + LRE EE + G E E+
Sbjct: 654 IADDSFLIILNANPNNVKVKFPKGKWEL---VISSYLREIKPEERIIEGEKELEI 705
>pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli
pdb|1KQG|A Chain A, Formate Dehydrogenase N From E. Coli
Length = 1015
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 26 VGCVPYRYKTGDGAGNVVDDI-EVLVITSQKGSQGMMFPKGGWELDETVKEAALR 79
VGC Y GDGA N + I + S+G + PKG LD E LR
Sbjct: 55 VGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLR 109
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
G + FP G + ET + AALRE EE G G++
Sbjct: 88 GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDI 123
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
G + FP G + ET + AALRE EE G G++
Sbjct: 90 GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDI 125
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 56 GSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV 91
G + FP G + ET + AALRE EE G G++
Sbjct: 88 GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDI 123
>pdb|2VOL|B Chain B, Murine Trim21 In Complex With Murine Igg Fc
Length = 180
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 22/86 (25%)
Query: 22 RRQVVGCVPYRYKTGDGAGNVVDDIE-----VLVITSQKGSQGMMFPKGGWELDETVKEA 76
RRQV + GD NV D+ E +V+ +Q+ S G M+ WE+D T KEA
Sbjct: 22 RRQV--------RMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMY----WEVDVTQKEA 69
Query: 77 ----ALRESFEEAGVMGNVEHELGKW 98
R+S + G ++ E G W
Sbjct: 70 WDLGVCRDSVQRKGQF-SLSPENGFW 94
>pdb|2VOK|A Chain A, Murine Trim21
pdb|2VOK|B Chain B, Murine Trim21
Length = 188
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 22/86 (25%)
Query: 22 RRQVVGCVPYRYKTGDGAGNVVDDIE-----VLVITSQKGSQGMMFPKGGWELDETVKEA 76
RRQV + GD NV D+ E +V+ +Q+ S G M+ WE+D T KEA
Sbjct: 28 RRQV--------RMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMY----WEVDVTQKEA 75
Query: 77 ----ALRESFEEAGVMGNVEHELGKW 98
R+S + G ++ E G W
Sbjct: 76 WDLGVCRDSVQRKGQF-SLSPENGFW 100
>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 42 VVDDIEVLVITSQKGSQG--MMFPKGGWELDETVKEAALRESFEEAGVMGN 90
+VDD +L+ G++ + F KG + E+V EAA RE EE G N
Sbjct: 57 IVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGAN 107
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 42 VVDDIEVLVITSQKGSQG--MMFPKGGWELDETVKEAALRESFEEAGVMGN 90
+VDD +L+ G++ + F KG + E+V EAA RE EE G N
Sbjct: 57 IVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGAN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,235,182
Number of Sequences: 62578
Number of extensions: 203197
Number of successful extensions: 478
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 50
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)