Query 030372
Match_columns 178
No_of_seqs 117 out of 1462
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2839 Diadenosine and diphos 99.9 1.3E-24 2.9E-29 155.5 11.4 140 15-162 1-143 (145)
2 cd03673 Ap6A_hydrolase Diadeno 99.9 9.6E-24 2.1E-28 151.3 14.8 127 23-158 1-130 (131)
3 cd04666 Nudix_Hydrolase_9 Memb 99.9 1.2E-23 2.7E-28 150.4 14.6 118 24-150 1-121 (122)
4 cd03428 Ap4A_hydrolase_human_l 99.9 1.8E-22 4E-27 144.9 13.9 126 23-158 2-129 (130)
5 PRK09438 nudB dihydroneopterin 99.9 3.7E-22 8E-27 146.9 13.2 129 22-162 6-147 (148)
6 cd04695 Nudix_Hydrolase_36 Mem 99.9 1.8E-21 3.9E-26 140.5 13.9 125 26-159 2-129 (131)
7 cd04684 Nudix_Hydrolase_25 Con 99.9 2.6E-21 5.5E-26 138.2 14.1 118 25-154 2-127 (128)
8 cd03675 Nudix_Hydrolase_2 Cont 99.9 4.9E-21 1.1E-25 138.4 15.6 122 25-158 2-128 (134)
9 cd04679 Nudix_Hydrolase_20 Mem 99.9 1.2E-21 2.6E-26 140.0 12.3 119 22-152 1-122 (125)
10 cd03674 Nudix_Hydrolase_1 Memb 99.9 1.1E-20 2.4E-25 137.6 14.4 125 23-158 2-137 (138)
11 cd03427 MTH1 MutT homolog-1 (M 99.9 9.4E-21 2E-25 137.3 12.9 111 47-158 13-125 (137)
12 PF00293 NUDIX: NUDIX domain; 99.9 2.3E-20 5E-25 133.7 14.8 126 22-158 1-133 (134)
13 COG1051 ADP-ribose pyrophospha 99.9 8.6E-21 1.9E-25 139.5 12.4 114 21-146 8-124 (145)
14 cd03430 GDPMH GDP-mannose glyc 99.9 2.2E-20 4.7E-25 137.2 14.2 113 21-144 10-132 (144)
15 PRK15434 GDP-mannose mannosyl 99.9 2.5E-20 5.4E-25 138.9 14.2 123 21-154 15-148 (159)
16 cd04664 Nudix_Hydrolase_7 Memb 99.9 2.2E-20 4.7E-25 134.2 13.2 121 25-154 3-128 (129)
17 cd04673 Nudix_Hydrolase_15 Mem 99.8 3E-20 6.6E-25 131.7 13.4 113 25-150 2-120 (122)
18 cd04700 DR1025_like DR1025 fro 99.8 3.1E-20 6.8E-25 136.0 13.6 119 21-151 11-132 (142)
19 cd04687 Nudix_Hydrolase_28 Mem 99.8 3.4E-20 7.4E-25 133.1 13.3 114 23-148 1-125 (128)
20 cd03672 Dcp2p mRNA decapping e 99.8 2.5E-20 5.4E-25 137.0 12.7 127 25-165 3-142 (145)
21 cd04681 Nudix_Hydrolase_22 Mem 99.8 3.1E-20 6.7E-25 133.4 11.9 122 25-157 3-129 (130)
22 PLN02325 nudix hydrolase 99.8 4.2E-20 9.2E-25 135.7 12.9 114 21-146 7-127 (144)
23 cd04696 Nudix_Hydrolase_37 Mem 99.8 5.9E-20 1.3E-24 131.3 13.3 119 24-154 3-124 (125)
24 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.7E-20 5.9E-25 131.7 11.3 115 25-154 2-117 (120)
25 cd04672 Nudix_Hydrolase_14 Mem 99.8 4.8E-20 1E-24 131.5 12.5 115 23-151 2-119 (123)
26 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.3E-19 2.7E-24 129.6 13.9 106 24-142 2-112 (125)
27 cd04688 Nudix_Hydrolase_29 Mem 99.8 9.9E-20 2.1E-24 130.3 13.3 111 25-148 3-122 (126)
28 cd04670 Nudix_Hydrolase_12 Mem 99.8 1.4E-19 2.9E-24 129.7 13.0 115 23-150 2-119 (127)
29 cd03671 Ap4A_hydrolase_plant_l 99.8 3.2E-19 7E-24 131.2 15.1 125 22-158 2-144 (147)
30 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.2E-19 2.6E-24 130.3 12.1 112 22-144 1-117 (129)
31 cd04676 Nudix_Hydrolase_17 Mem 99.8 1.5E-19 3.2E-24 128.9 12.2 121 23-155 2-128 (129)
32 cd04667 Nudix_Hydrolase_10 Mem 99.8 1.4E-19 3.1E-24 127.0 11.1 98 47-152 12-109 (112)
33 cd04677 Nudix_Hydrolase_18 Mem 99.8 2.3E-19 5E-24 129.0 12.2 113 23-147 7-125 (132)
34 PRK15472 nucleoside triphospha 99.8 3.8E-19 8.2E-24 129.8 13.4 108 47-155 16-136 (141)
35 cd04511 Nudix_Hydrolase_4 Memb 99.8 1.8E-19 3.9E-24 129.8 11.1 113 21-150 11-126 (130)
36 cd04669 Nudix_Hydrolase_11 Mem 99.8 3.3E-19 7.2E-24 127.0 12.2 107 25-148 2-118 (121)
37 cd04690 Nudix_Hydrolase_31 Mem 99.8 2.3E-19 5E-24 126.7 10.8 99 47-148 13-114 (118)
38 cd04683 Nudix_Hydrolase_24 Mem 99.8 4.8E-19 1E-23 125.5 12.2 108 25-145 2-115 (120)
39 cd04691 Nudix_Hydrolase_32 Mem 99.8 4.6E-19 1E-23 125.6 11.6 95 47-146 12-110 (117)
40 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1.2E-18 2.5E-23 126.3 13.9 127 23-162 2-135 (137)
41 PRK10546 pyrimidine (deoxy)nuc 99.8 1.3E-18 2.8E-23 125.7 13.8 114 47-164 16-132 (135)
42 cd04682 Nudix_Hydrolase_23 Mem 99.8 4.6E-19 9.9E-24 126.3 11.1 97 47-145 13-115 (122)
43 cd03429 NADH_pyrophosphatase N 99.8 9.6E-19 2.1E-23 126.4 11.9 95 46-144 12-107 (131)
44 cd04686 Nudix_Hydrolase_27 Mem 99.8 1.8E-18 3.9E-23 124.9 13.0 108 25-145 2-120 (131)
45 PRK00241 nudC NADH pyrophospha 99.8 1.5E-18 3.3E-23 138.5 13.6 106 47-156 144-251 (256)
46 cd03426 CoAse Coenzyme A pyrop 99.8 8.5E-19 1.8E-23 130.4 11.1 111 24-144 2-118 (157)
47 cd04671 Nudix_Hydrolase_13 Mem 99.8 2.2E-18 4.8E-23 123.3 12.3 102 25-142 2-108 (123)
48 PRK00714 RNA pyrophosphohydrol 99.8 6.8E-18 1.5E-22 125.5 14.3 128 21-160 6-150 (156)
49 cd04661 MRP_L46 Mitochondrial 99.8 3.4E-18 7.3E-23 123.7 11.5 102 45-147 12-123 (132)
50 cd04693 Nudix_Hydrolase_34 Mem 99.8 4.3E-18 9.4E-23 121.9 11.2 99 47-149 13-118 (127)
51 PRK05379 bifunctional nicotina 99.8 1.2E-17 2.6E-22 138.5 14.4 125 22-158 202-338 (340)
52 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.4E-17 3E-22 122.0 13.0 116 23-146 2-129 (144)
53 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.5E-17 3.2E-22 119.3 11.9 111 25-149 2-117 (126)
54 cd02885 IPP_Isomerase Isopente 99.8 2.4E-17 5.2E-22 123.5 12.8 114 22-147 29-151 (165)
55 cd04699 Nudix_Hydrolase_39 Mem 99.7 3.5E-17 7.6E-22 116.8 12.6 98 47-145 14-115 (129)
56 cd04662 Nudix_Hydrolase_5 Memb 99.7 2.5E-17 5.4E-22 117.7 11.3 105 25-138 2-126 (126)
57 PRK15393 NUDIX hydrolase YfcD; 99.7 1.4E-16 2.9E-21 121.2 14.8 116 47-165 50-172 (180)
58 PRK10776 nucleoside triphospha 99.7 1.2E-16 2.5E-21 114.0 12.9 108 47-158 17-127 (129)
59 cd02883 Nudix_Hydrolase Nudix 99.7 4.6E-17 1E-21 114.0 10.6 113 25-148 2-116 (123)
60 cd03425 MutT_pyrophosphohydrol 99.7 2.8E-16 6.1E-21 110.8 13.3 106 47-156 14-122 (124)
61 PRK11762 nudE adenosine nucleo 99.7 3.1E-16 6.8E-21 119.6 14.2 104 47-152 60-167 (185)
62 PRK03759 isopentenyl-diphospha 99.7 4.1E-16 8.9E-21 118.9 14.2 116 21-148 32-156 (184)
63 TIGR00586 mutt mutator mutT pr 99.7 4.1E-16 8.8E-21 111.3 13.3 106 47-156 17-125 (128)
64 cd04665 Nudix_Hydrolase_8 Memb 99.7 2E-16 4.4E-21 112.4 11.5 91 47-141 12-102 (118)
65 cd04694 Nudix_Hydrolase_35 Mem 99.7 4.1E-16 8.9E-21 114.4 12.4 102 47-148 14-135 (143)
66 TIGR00052 nudix-type nucleosid 99.7 4E-16 8.7E-21 119.0 12.5 119 23-153 44-174 (185)
67 TIGR02705 nudix_YtkD nucleosid 99.7 3.6E-15 7.8E-20 110.5 15.6 110 47-163 36-152 (156)
68 PRK10729 nudF ADP-ribose pyrop 99.7 1.4E-15 2.9E-20 117.6 13.9 118 23-152 49-179 (202)
69 TIGR02150 IPP_isom_1 isopenten 99.7 1.2E-15 2.7E-20 113.6 13.0 116 20-149 24-147 (158)
70 PRK10707 putative NUDIX hydrol 99.7 1.4E-15 3.1E-20 116.5 12.6 114 22-146 29-148 (190)
71 cd04685 Nudix_Hydrolase_26 Mem 99.7 1.5E-15 3.3E-20 110.1 12.2 109 25-144 2-123 (133)
72 cd03676 Nudix_hydrolase_3 Memb 99.6 1.3E-14 2.8E-19 110.1 14.9 126 20-152 29-166 (180)
73 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 6.5E-15 1.4E-19 112.0 12.0 114 43-159 46-184 (186)
74 PRK15009 GDP-mannose pyrophosp 99.6 1.7E-14 3.7E-19 110.5 14.1 118 23-153 45-175 (191)
75 cd04674 Nudix_Hydrolase_16 Mem 99.6 6.4E-15 1.4E-19 104.6 10.8 103 22-138 3-109 (118)
76 cd04663 Nudix_Hydrolase_6 Memb 99.6 5.9E-15 1.3E-19 105.7 10.0 44 45-90 13-56 (126)
77 PRK08999 hypothetical protein; 99.6 3.4E-14 7.3E-19 116.4 13.5 107 47-157 18-127 (312)
78 COG2816 NPY1 NTP pyrophosphohy 99.6 5.7E-15 1.2E-19 117.4 6.1 96 47-146 156-252 (279)
79 PLN03143 nudix hydrolase; Prov 99.5 5.2E-13 1.1E-17 107.9 16.8 116 24-147 129-268 (291)
80 PLN02709 nudix hydrolase 99.5 1.7E-13 3.6E-18 106.7 11.6 118 21-144 30-155 (222)
81 KOG3084 NADH pyrophosphatase I 99.4 2.4E-14 5.3E-19 114.6 1.7 98 47-146 201-300 (345)
82 PLN02552 isopentenyl-diphospha 99.4 8E-12 1.7E-16 99.1 15.0 128 20-158 53-224 (247)
83 COG0494 MutT NTP pyrophosphohy 99.4 3.1E-12 6.8E-17 91.6 11.8 102 46-148 24-138 (161)
84 COG4119 Predicted NTP pyrophos 99.3 3.5E-11 7.6E-16 84.7 11.2 129 22-160 2-150 (161)
85 PLN02791 Nudix hydrolase homol 99.3 1.4E-10 3.1E-15 104.2 15.1 117 20-146 29-160 (770)
86 KOG3041 Nucleoside diphosphate 99.2 6.3E-10 1.4E-14 83.9 12.2 111 25-146 75-196 (225)
87 KOG3069 Peroxisomal NUDIX hydr 99.0 2.4E-09 5.2E-14 82.9 9.6 118 21-145 40-164 (246)
88 cd03431 DNA_Glycosylase_C DNA 99.0 1.3E-08 2.8E-13 71.1 12.3 99 47-155 15-116 (118)
89 KOG0648 Predicted NUDIX hydrol 98.9 2.4E-09 5.2E-14 85.9 4.8 111 21-145 113-232 (295)
90 PLN02839 nudix hydrolase 98.7 4.8E-07 1E-11 75.0 14.0 124 44-167 216-353 (372)
91 COG1443 Idi Isopentenyldiphosp 98.5 4.1E-07 9E-12 67.7 6.8 116 23-150 33-159 (185)
92 PF14815 NUDIX_4: NUDIX domain 98.1 1.8E-05 4E-10 55.3 7.6 100 47-153 10-112 (114)
93 KOG4195 Transient receptor pot 98.0 8.8E-06 1.9E-10 62.8 4.0 39 46-85 139-177 (275)
94 KOG2937 Decapping enzyme compl 97.7 9E-06 2E-10 66.1 0.3 108 21-142 80-190 (348)
95 PF13869 NUDIX_2: Nucleotide h 97.6 0.00041 8.9E-09 52.7 8.1 69 20-99 41-115 (188)
96 COG4112 Predicted phosphoester 97.3 0.0073 1.6E-07 44.7 10.7 99 47-145 73-188 (203)
97 KOG1689 mRNA cleavage factor I 96.9 0.0024 5.2E-08 47.6 5.2 56 20-86 67-122 (221)
98 KOG4432 Uncharacterized NUDIX 96.8 0.0046 1E-07 50.1 6.8 79 61-139 82-160 (405)
99 KOG0142 Isopentenyl pyrophosph 96.4 0.019 4.2E-07 44.0 7.3 76 72-147 104-186 (225)
100 KOG4548 Mitochondrial ribosoma 96.4 0.025 5.4E-07 44.8 8.2 100 47-147 140-250 (263)
101 KOG4432 Uncharacterized NUDIX 96.3 0.014 3E-07 47.4 6.2 89 60-150 286-382 (405)
102 KOG4313 Thiamine pyrophosphoki 95.9 0.04 8.6E-07 43.7 7.1 105 44-148 146-262 (306)
103 PRK10880 adenine DNA glycosyla 95.0 0.34 7.4E-06 40.7 10.1 96 47-154 243-341 (350)
104 PRK13910 DNA glycosylase MutY; 84.4 21 0.00046 29.2 10.9 25 132-156 256-280 (289)
105 PF14443 DBC1: DBC1 78.4 5.7 0.00012 28.4 4.7 46 45-90 7-59 (126)
106 PF03487 IL13: Interleukin-13; 67.6 5 0.00011 22.6 1.8 24 62-85 13-36 (43)
107 PF07026 DUF1317: Protein of u 63.4 16 0.00034 22.4 3.6 23 58-83 22-44 (60)
108 PHA02754 hypothetical protein; 53.7 18 0.00039 22.2 2.7 30 137-166 3-32 (67)
109 KOG2937 Decapping enzyme compl 39.5 8.7 0.00019 31.9 -0.3 32 58-89 264-295 (348)
110 PF13014 KH_3: KH domain 35.1 27 0.00059 19.4 1.4 17 77-93 12-28 (43)
111 COG1194 MutY A/G-specific DNA 34.2 62 0.0013 27.2 3.9 23 47-69 248-273 (342)
112 COG4111 Uncharacterized conser 33.2 2.7E+02 0.0058 22.7 7.3 51 44-99 35-86 (322)
113 TIGR01084 mutY A/G-specific ad 27.8 1.9E+02 0.0042 23.4 5.7 19 47-65 240-261 (275)
114 KOG0648 Predicted NUDIX hydrol 26.9 28 0.0006 28.6 0.7 32 58-90 55-86 (295)
115 PF09505 Dimeth_Pyl: Dimethyla 23.1 49 0.0011 27.7 1.4 23 66-88 408-430 (466)
116 cd02393 PNPase_KH Polynucleoti 21.3 64 0.0014 19.5 1.4 16 77-92 23-38 (61)
117 COG4353 Uncharacterized conser 21.3 93 0.002 23.3 2.4 15 59-73 128-142 (192)
No 1
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-24 Score=155.52 Aligned_cols=140 Identities=49% Similarity=0.822 Sum_probs=117.9
Q ss_pred eeecCCCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccce-
Q 030372 15 QRYDNMGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEH- 93 (178)
Q Consensus 15 ~~~~~~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~- 93 (178)
++|++..+|.++|||+|+.+ +...+||||+..+.+..|.+|+|+++++||..+||+||+.||.|+......
T Consensus 1 qry~~~G~r~vagCi~~r~~--------~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~ 72 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSD--------KEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRL 72 (145)
T ss_pred CccCCCCcEEEEEeeeeeec--------CcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeecc
Confidence 46776689999999999988 345799999988865889999999999999999999999999999998886
Q ss_pred eeeEEEeeecCCCcEEEEEEEEEEeccccccCCccc--eeeeEEEeHHHHHHHhccchHHHHHHHHHHHHh
Q 030372 94 ELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWPEKD--VRQRIWMSVAEAREACRHGWMKEALDILVERLS 162 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 162 (178)
+.+...+.+....+.+..+.|.+.+......+|+.+ ..+..|+.++|+...+.+..|+.++..+++.+.
T Consensus 73 ~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 73 LGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred ccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 444444665555556677888888877666677665 788899999999999999999999999988764
No 2
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.92 E-value=9.6e-24 Score=151.34 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=99.7
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~ 102 (178)
+.+|++|+++.+ ++..+|||+++++. +.|.||||+++.|||+.+||.||++||||+.+....++..+.|..
T Consensus 1 ~~~a~~ii~~~~--------~~~~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 71 (131)
T cd03673 1 VLAAGGVVFRGS--------DGGIEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWF 71 (131)
T ss_pred CeeEEEEEEEcc--------CCCeEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEec
Confidence 467899999886 45569999999887 899999999999999999999999999999988777777766654
Q ss_pred cCC--CcEEEEEEEEEEeccccccC-CccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 103 KSR--GTFYEGYMFPLLVTEQLELW-PEKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 103 ~~~--~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
... ......++|.+......... ++.|..++.|++++++.+++.++..+.++..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 72 SSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred cCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 432 22334455666554333222 455788899999999999999999999988764
No 3
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.92 E-value=1.2e-23 Score=150.36 Aligned_cols=118 Identities=40% Similarity=0.643 Sum_probs=94.8
Q ss_pred EEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc-eeeeEEEeee
Q 030372 24 QVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE-HELGKWNFLS 102 (178)
Q Consensus 24 ~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~-~~~~~~~~~~ 102 (178)
++||+|+|+.+ ++..+|||+++++. +.|.+|||+++.|||+.+||+||++||||+.+... .+++.+.+..
T Consensus 1 ~~~g~v~~~~~--------~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~ 71 (122)
T cd04666 1 LQAGAIPYRET--------GGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRK 71 (122)
T ss_pred CEEEEEEEEEc--------CCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeee
Confidence 36899999876 45579999998877 89999999999999999999999999999998777 8888887665
Q ss_pred cCC--CcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchH
Q 030372 103 KSR--GTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWM 150 (178)
Q Consensus 103 ~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 150 (178)
... .......+|.+.+.......++.+..++.|++++++.+++.++++
T Consensus 72 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 72 RSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred cCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 432 124555677777655444445556778999999999999988765
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.90 E-value=1.8e-22 Score=144.93 Aligned_cols=126 Identities=25% Similarity=0.282 Sum_probs=94.8
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE--e
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN--F 100 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~--~ 100 (178)
+.+||+|+|..+ ++..+|||+++++ +.|.+|||++++|||+.+||+||++||||+.+.....+..+. +
T Consensus 2 ~~~~g~vi~~~~--------~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 71 (130)
T cd03428 2 ERSAGAIIYRRL--------NNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETL 71 (130)
T ss_pred ceEEEEEEEEec--------CCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEE
Confidence 457999999887 5667899998886 789999999999999999999999999999987665542222 2
Q ss_pred eecCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 101 LSKSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
............+|.+..........++|..++.|++++++.+++.++.++.++++..
T Consensus 72 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 129 (130)
T cd03428 72 NYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKAH 129 (130)
T ss_pred EccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence 2111122334556777665332223336788899999999999999999998887654
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.89 E-value=3.7e-22 Score=146.87 Aligned_cols=129 Identities=22% Similarity=0.186 Sum_probs=92.7
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc--eeee---
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE--HELG--- 96 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~--~~~~--- 96 (178)
.+.+|++++++.+ + +|||+++...++.|.+|||+++.|||+.+||+||++||||+++... .++.
T Consensus 6 ~~~~v~~vi~~~~---------~--~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 74 (148)
T PRK09438 6 RPVSVLVVIYTPD---------L--GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQR 74 (148)
T ss_pred CceEEEEEEEeCC---------C--eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccccc
Confidence 5778888888754 2 7999988765588999999999999999999999999999987322 2221
Q ss_pred --EEEee------ecCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHHHHHHHHHh
Q 030372 97 --KWNFL------SKSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEALDILVERLS 162 (178)
Q Consensus 97 --~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 162 (178)
.+.+. +.........++|.+........ ..+|+.++.|++++++.++...+.++.++..+..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~ 147 (148)
T PRK09438 75 SIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV-VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA 147 (148)
T ss_pred ccccccchhhhhccccccCCceeEEEEEecCCCCcc-ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence 11111 01111122345666665433222 2338889999999999999999999999998887764
No 6
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=1.8e-21 Score=140.49 Aligned_cols=125 Identities=23% Similarity=0.168 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCCCCCcCCCeEEEEEEeeCC-CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE--Eeee
Q 030372 26 VGCVPYRYKTGDGAGNVVDDIEVLVITSQKG-SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW--NFLS 102 (178)
Q Consensus 26 ~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~-~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~--~~~~ 102 (178)
+|+|++... ++..+|||+++... ++.|.+|||+++.|||+.+||+||++||||+++......... .|..
T Consensus 2 ~~~v~~~~~--------~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 73 (131)
T cd04695 2 VSGVLLRSL--------DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEA 73 (131)
T ss_pred ceEEEEEEc--------CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeec
Confidence 577777765 34568999998872 289999999999999999999999999999997543221111 1221
Q ss_pred cCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHHHHHHH
Q 030372 103 KSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEALDILVE 159 (178)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 159 (178)
.....+...+|.+.........+++|..+.+|++++++.++...+.++.+++.+..
T Consensus 74 -~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 129 (131)
T cd04695 74 -NDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWR 129 (131)
T ss_pred -CCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHh
Confidence 12223444556665543333334468889999999999999999999988876543
No 7
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.88 E-value=2.6e-21 Score=138.18 Aligned_cols=118 Identities=24% Similarity=0.213 Sum_probs=87.9
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeee
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~ 102 (178)
.|++|+++.+ +|||+++++.+ +.|.+|||+++.|||+.+||+||++||||+++....+++.+.+..
T Consensus 2 ~~~~ii~~~~------------~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 69 (128)
T cd04684 2 GAYAVIPRDG------------KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYF 69 (128)
T ss_pred eeEEEEEeCC------------EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEE
Confidence 4667777655 99999988753 889999999999999999999999999999987777777665433
Q ss_pred cCCCc----EEEEEEEEEEeccccc--cCCccceeeeEEEeHHHHHHHhccchHHHHH
Q 030372 103 KSRGT----FYEGYMFPLLVTEQLE--LWPEKDVRQRIWMSVAEAREACRHGWMKEAL 154 (178)
Q Consensus 103 ~~~~~----~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 154 (178)
..... ....++|.+....... ..+..+..++.|++++++......+....++
T Consensus 70 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 70 YSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred ECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 22211 2344566666654432 3445577889999999999888777666554
No 8
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.88 E-value=4.9e-21 Score=138.36 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=87.6
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeec
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSK 103 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~ 103 (178)
.+++|+...+ ++||+++.+.. +.|.+|||++++|||+.+||.||++||||+.+....+++.+.+...
T Consensus 2 ~v~~ii~~~~------------~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 69 (134)
T cd03675 2 TVAAVVERDG------------RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAP 69 (134)
T ss_pred eEEEEEEECC------------EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecC
Confidence 4566766554 89999987653 6899999999999999999999999999999877777776665543
Q ss_pred CCCcEEEEEEEEEEecccccc-CCccceeeeEEEeHHHHHHHhc---cchHHHHHHHHH
Q 030372 104 SRGTFYEGYMFPLLVTEQLEL-WPEKDVRQRIWMSVAEAREACR---HGWMKEALDILV 158 (178)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~---~~~~~~~l~~~~ 158 (178)
.....+..++|.+........ ..++++.++.|++++++..+.. .+.+++.++.++
T Consensus 70 ~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l 128 (134)
T cd03675 70 DSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYL 128 (134)
T ss_pred CCCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHH
Confidence 322334445676666543322 3345788899999999998873 444555554433
No 9
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=1.2e-21 Score=140.02 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=87.4
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN 99 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~ 99 (178)
+|..|++++++.+ .+|||+++.+.+ +.|.+|||+++.|||+.+||+||++||||+++....+++.+.
T Consensus 1 ~~~~~~~~i~~~~-----------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~ 69 (125)
T cd04679 1 PRVGCGAAILRDD-----------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVD 69 (125)
T ss_pred CceEEEEEEECCC-----------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEe
Confidence 4788999998764 289999886532 789999999999999999999999999999988777777765
Q ss_pred eeecCCCcEEEEEEEEEEecccccc-CCccceeeeEEEeHHHHHHHhccchHHH
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQLEL-WPEKDVRQRIWMSVAEAREACRHGWMKE 152 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~ 152 (178)
+........+...+|.+........ ...+|..++.|++++++.+.+. +.++.
T Consensus 70 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~-~~~~~ 122 (125)
T cd04679 70 HIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT-RATRD 122 (125)
T ss_pred ecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH-HHHHH
Confidence 5443333344445666665443322 2334788999999999987553 33443
No 10
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.86 E-value=1.1e-20 Score=137.58 Aligned_cols=125 Identities=17% Similarity=0.115 Sum_probs=87.3
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeee------
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELG------ 96 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~------ 96 (178)
+..|++++++.+ ..+|||++++.. +.|.+|||++++|||+++||+||++||||+++....+.+
T Consensus 2 ~~~~~~~v~~~~----------~~~vLLv~r~~~-~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 70 (138)
T cd03674 2 HFTASAFVVNPD----------RGKVLLTHHRKL-GSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLD 70 (138)
T ss_pred cEEEEEEEEeCC----------CCeEEEEEEcCC-CcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccce
Confidence 567888888653 238999998876 899999999999999999999999999999865544332
Q ss_pred EEEeeecCC----CcEEEEEEEEEEecccccc-CCccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 97 KWNFLSKSR----GTFYEGYMFPLLVTEQLEL-WPEKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 97 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
......... ...+...+|.+........ .+++|..+++|++++++..+...+..+.++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 71 VHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred eEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 111111111 1223334566655433322 2455788899999999987776777777776554
No 11
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.86 E-value=9.4e-21 Score=137.26 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=85.5
Q ss_pred EEEEEEeeCC--CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEecccccc
Q 030372 47 EVLVITSQKG--SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLEL 124 (178)
Q Consensus 47 ~vLLv~~~~~--~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
+|||+++.+. ++.|.+|||+++.|||+.+||+||++||||+.+....+++.+.+...........++|.+.......
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~- 91 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEGEP- 91 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccccc-
Confidence 8999998874 3889999999999999999999999999999988877777776654432233444556655433322
Q ss_pred CCccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 125 WPEKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 125 ~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
....+..++.|++++++......+..+..+..++
T Consensus 92 ~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 92 LKESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred CCCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 2244567889999999998877888888888777
No 12
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.86 E-value=2.3e-20 Score=133.72 Aligned_cols=126 Identities=23% Similarity=0.269 Sum_probs=96.0
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC----CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeE
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS----QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGK 97 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~----~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~ 97 (178)
.|.+|++++++.+ + +|||+++.+.+ +.|.+|||+++.|||+.+||+||+.||||+.+......+.
T Consensus 1 ~~~~v~~ii~~~~---------~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~ 69 (134)
T PF00293_consen 1 WRRAVGVIIFNED---------G--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGL 69 (134)
T ss_dssp EEEEEEEEEEETT---------T--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred CCCEEEEEEEeCC---------c--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccccee
Confidence 3788999999876 2 89999998874 6899999999999999999999999999999866677776
Q ss_pred EEeeecCCCc-EEEEEEEEEEecccc--ccCCccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 98 WNFLSKSRGT-FYEGYMFPLLVTEQL--ELWPEKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
+.+....... ....++|.+...... ......+..++.|++++++.++..+.....++..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 70 FSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred eeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence 6666554432 233445555443322 223333889999999999999998887777666553
No 13
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.86 E-value=8.6e-21 Score=139.49 Aligned_cols=114 Identities=23% Similarity=0.210 Sum_probs=88.0
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW 98 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~ 98 (178)
.+...+++++...+ +|||++|++.| |.|.+|||+++.|||+++||+||++||||++++...+++++
T Consensus 8 ~p~~~v~~~i~~~~------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~ 75 (145)
T COG1051 8 TPLVAVGALIVRNG------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVF 75 (145)
T ss_pred CcceeeeEEEEeCC------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Confidence 46777888888765 99999999987 78999999999999999999999999999998888999988
Q ss_pred EeeecCCCcEEEEEEEEEEeccc-cccCCccceeeeEEEeHHHHHHHhc
Q 030372 99 NFLSKSRGTFYEGYMFPLLVTEQ-LELWPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~ 146 (178)
+......+..+..++|.+..... ......++...+.|+++++++.+..
T Consensus 76 ~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 76 DDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred cCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccccc
Confidence 77765433333344454444322 2222333677889999999987643
No 14
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.85 E-value=2.2e-20 Score=137.17 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=83.1
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc--eeee
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE--HELG 96 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~--~~~~ 96 (178)
.++..|++|+++.+ ++|||+++.+.+ +.|.+|||+++.|||+.+||+||++||||+.+... .+++
T Consensus 10 ~p~v~v~~vI~~~~-----------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~ 78 (144)
T cd03430 10 TPLVSIDLIVENED-----------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLG 78 (144)
T ss_pred CCeEEEEEEEEeCC-----------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEE
Confidence 35678888888753 289999987543 88999999999999999999999999999998766 6666
Q ss_pred EEEeeecC------CCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHH
Q 030372 97 KWNFLSKS------RGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREA 144 (178)
Q Consensus 97 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 144 (178)
.+.+.... ....+...+|.+.........+..+..+++|++++++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 79 VFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 65433221 1123344556665544333445568889999999999864
No 15
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.85 E-value=2.5e-20 Score=138.90 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=85.5
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeecc--ceeee
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNV--EHELG 96 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~--~~~~~ 96 (178)
.+..+|++|+++.. ++|||++|...+ +.|.||||+++.|||+++||+||++||||+.+.+ ..+++
T Consensus 15 ~~~~~v~~vI~~~~-----------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~ 83 (159)
T PRK15434 15 TPLISLDFIVENSR-----------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG 83 (159)
T ss_pred CceEEEEEEEECCC-----------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEE
Confidence 34667878876543 389999987543 7899999999999999999999999999998643 35555
Q ss_pred EEEeeecC---C---CcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHh-ccchHHHHH
Q 030372 97 KWNFLSKS---R---GTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREAC-RHGWMKEAL 154 (178)
Q Consensus 97 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~-~~~~~~~~l 154 (178)
.+.+.+.. . ...+...+|.+............|+.+++|++++++.... ..+.++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 148 (159)
T PRK15434 84 VWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF 148 (159)
T ss_pred EEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence 54433221 1 1234455677766544333344578999999999998764 334444443
No 16
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.85 E-value=2.2e-20 Score=134.21 Aligned_cols=121 Identities=21% Similarity=0.173 Sum_probs=87.1
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC-CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE----
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG-SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN---- 99 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~-~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~---- 99 (178)
++.+++++.. +..+|||+++.+. ++.|.+|||+++.|||+.+||+||++||||+.+.....+....
T Consensus 3 ~~~v~~~~~~---------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~ 73 (129)
T cd04664 3 SVLVVPYRLT---------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAF 73 (129)
T ss_pred EEEEEEEEeC---------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccc
Confidence 4667777763 2348999998874 4899999999999999999999999999999975554444332
Q ss_pred eeecCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHH
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEAL 154 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 154 (178)
+...........++|.+..........++|..++.|++++++.+++.++.++.++
T Consensus 74 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 74 VEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred cccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 1111111234456677766543323344577889999999999999988887764
No 17
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=3e-20 Score=131.66 Aligned_cols=113 Identities=25% Similarity=0.275 Sum_probs=82.1
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeee
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~ 102 (178)
+|++++++.+ +|||+++++.+ +.|.+|||+++.|||+++||+||++||||+.+....+++.+.+..
T Consensus 2 ~v~~ii~~~~------------~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 69 (122)
T cd04673 2 AVGAVVFRGG------------RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIE 69 (122)
T ss_pred cEEEEEEECC------------EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEee
Confidence 4566776644 89999987632 779999999999999999999999999999987777777665544
Q ss_pred cCC--Cc--EEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchH
Q 030372 103 KSR--GT--FYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWM 150 (178)
Q Consensus 103 ~~~--~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 150 (178)
... .. .+....|.+...... ..+..|..++.|++++++.++...+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~~~~~~~~ 120 (122)
T cd04673 70 RDAAGRVEFHYVLIDFLCRYLGGE-PVAGDDALDARWVPLDELAALSLTEST 120 (122)
T ss_pred ccCCCccceEEEEEEEEEEeCCCc-ccCCcccceeEEECHHHHhhCcCCccc
Confidence 321 11 223344555544332 234557888999999999988766654
No 18
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.85 E-value=3.1e-20 Score=135.96 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=87.2
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW 98 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~ 98 (178)
.+..+|++++++.+ + +|||++++..+ +.|.+|||++++|||+++||+||++||||+.+....+++.+
T Consensus 11 ~~~~av~~vv~~~~---------~--~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~ 79 (142)
T cd04700 11 VEARAAGAVILNER---------N--DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTY 79 (142)
T ss_pred eeeeeEEEEEEeCC---------C--cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEE
Confidence 35677888888754 2 79999876543 77999999999999999999999999999998877777766
Q ss_pred EeeecCCCcEEEEEEEEEEecccc-ccCCccceeeeEEEeHHHHHHHhccchHH
Q 030372 99 NFLSKSRGTFYEGYMFPLLVTEQL-ELWPEKDVRQRIWMSVAEAREACRHGWMK 151 (178)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 151 (178)
.+..... .....++|.+...... .....+|+.++.|++++++.+++....+.
T Consensus 80 ~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 80 LGRFDDG-VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred EEEcCCC-cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 5443322 2233456666653322 22234588899999999999988765444
No 19
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=3.4e-20 Score=133.07 Aligned_cols=114 Identities=20% Similarity=0.243 Sum_probs=81.9
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFL 101 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~ 101 (178)
|.+|++|+++.+ +|||+++.+.. +.|.+|||+++.|||+++||+||++||||+++....++..+.+.
T Consensus 1 r~~a~~iv~~~~------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~ 68 (128)
T cd04687 1 RNSAKAVIIKND------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYI 68 (128)
T ss_pred CcEEEEEEEECC------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEe
Confidence 567888988755 99999986542 57999999999999999999999999999998776666555444
Q ss_pred ecC------CCcEEEEEEEEEEeccccc----cCCccceeeeEEEeHHHHHHHhccc
Q 030372 102 SKS------RGTFYEGYMFPLLVTEQLE----LWPEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 102 ~~~------~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
... .......++|.+....... ..++.+..+++|++++++.++..++
T Consensus 69 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 69 GHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred ccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 221 1122334566666543221 1233455688999999998876654
No 20
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.85 E-value=2.5e-20 Score=137.04 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=84.5
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecC
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKS 104 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~ 104 (178)
++|+|+++.+ ..+|||+++... +.|+||||+++.|||+.+||+||++||||+.+....... .|....
T Consensus 3 ~~gaii~~~~----------~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~--~~~~~~ 69 (145)
T cd03672 3 VYGAIILNED----------LDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKD--DYIELI 69 (145)
T ss_pred eeEEEEEeCC----------CCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccc--eeeecc
Confidence 5888998764 238999998776 799999999999999999999999999999876432111 122111
Q ss_pred CCcEEEEEEEEEEe-ccccc--cCCccceeeeEEEeHHHHHHHhccc----------hHHHHHHHHHHHHhccc
Q 030372 105 RGTFYEGYMFPLLV-TEQLE--LWPEKDVRQRIWMSVAEAREACRHG----------WMKEALDILVERLSSRV 165 (178)
Q Consensus 105 ~~~~~~~~~~~~~~-~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~----------~~~~~l~~~~~~l~~~~ 165 (178)
.... ...+|.+.. ..... ..+.+|..+++|++++++..+.... ..+..+.-+.+++..+.
T Consensus 70 ~~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (145)
T cd03672 70 IRGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINRQK 142 (145)
T ss_pred cCCc-EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHHhh
Confidence 1111 223333322 22111 2234578899999999999887432 22566666777776554
No 21
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.1e-20 Score=133.39 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=84.3
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeee
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~ 102 (178)
+|++++++.+ .+|||+++...+ +.|.+|||+++.|||+.+||.||++||||+.+....+++.+....
T Consensus 3 av~~~i~~~~-----------~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 71 (130)
T cd04681 3 AVGVLILNED-----------GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTY 71 (130)
T ss_pred eEEEEEEcCC-----------CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeeccee
Confidence 4666666543 289999886543 789999999999999999999999999999987666666543222
Q ss_pred cCCCc--EEEEEEEEEEeccccccCCccceeeeEEEeHHHHH-HHhccchHHHHHHHH
Q 030372 103 KSRGT--FYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAR-EACRHGWMKEALDIL 157 (178)
Q Consensus 103 ~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~ 157 (178)
...+. ....++|.+...........++..++.|++++++. +.+.++..+.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 129 (130)
T cd04681 72 PYGGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW 129 (130)
T ss_pred eeCCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence 21111 12223555655443333344578889999999985 455667777777654
No 22
>PLN02325 nudix hydrolase
Probab=99.84 E-value=4.2e-20 Score=135.66 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=81.2
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW 98 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~ 98 (178)
.++..|++++++.+ +|||+++++.+ +.|.+|||+++.|||+.+||+||++||||+++....+++.+
T Consensus 7 ~p~~~v~~vi~~~~------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~ 74 (144)
T PLN02325 7 IPRVAVVVFLLKGN------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVT 74 (144)
T ss_pred CCeEEEEEEEEcCC------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEe
Confidence 46777777777654 89999987643 68999999999999999999999999999998888887775
Q ss_pred EeeecCC--CcEEEEEEEEEEeccccc---cCCccceeeeEEEeHHHHHHHhc
Q 030372 99 NFLSKSR--GTFYEGYMFPLLVTEQLE---LWPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 99 ~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~~~ 146 (178)
.+..... ...+...+|.+...+... ....++..+++|+++++++..+.
T Consensus 75 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 75 NNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred cceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhh
Confidence 5433221 123334455555433221 11223457789999999987544
No 23
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=5.9e-20 Score=131.34 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=82.8
Q ss_pred EEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeec
Q 030372 24 QVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSK 103 (178)
Q Consensus 24 ~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~ 103 (178)
.+|++++++.+ + +|||+++...++.|.+|||+++.|||+.+||+||++||||+.+....++....+...
T Consensus 3 ~~v~~~i~~~~---------~--~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 71 (125)
T cd04696 3 VTVGALIYAPD---------G--RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFS 71 (125)
T ss_pred cEEEEEEECCC---------C--CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEecc
Confidence 46778887644 2 799998765348899999999999999999999999999999876655554333221
Q ss_pred C--C-CcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHH
Q 030372 104 S--R-GTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEAL 154 (178)
Q Consensus 104 ~--~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 154 (178)
. . ...+..+.|.+..... ....+++..+++|++++++.++...+.+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~ 124 (125)
T cd04696 72 EEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTRLLL 124 (125)
T ss_pred CCCCCccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHHHHh
Confidence 1 1 1122234455554332 23345578889999999999887666555543
No 24
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.7e-20 Score=131.66 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=84.5
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeec-cceeeeEEEeeec
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGN-VEHELGKWNFLSK 103 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~-~~~~~~~~~~~~~ 103 (178)
.|.+++++.+ .+|||++++.. +.|.+|||+++.|||+++||+||++||||+.+. ...+++.+.+...
T Consensus 2 ~~~~~i~~~~-----------~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~ 69 (120)
T cd04680 2 GARAVVTDAD-----------GRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSAS 69 (120)
T ss_pred ceEEEEECCC-----------CeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCC
Confidence 3566776543 28999998877 699999999999999999999999999999988 6677777665533
Q ss_pred CCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHH
Q 030372 104 SRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEAL 154 (178)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 154 (178)
. .....++|.+.........++.|..++.|++++++++++. +..+..+
T Consensus 70 ~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~-~~~~~~~ 117 (120)
T cd04680 70 G--SWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEPTT-PATRRRI 117 (120)
T ss_pred C--CceEEEEEEecccCCCccCCcccEEEEEEECHHHCcccCC-hHHHHHh
Confidence 2 2234456666655433344556788999999999988654 3344333
No 25
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=4.8e-20 Score=131.50 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=83.0
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~ 102 (178)
+..|.+++++.+ +|||+++++. +.|.+|||++++|||+.+||+||++||||+.+....+++.+....
T Consensus 2 ~~~v~~~i~~~~------------~vLL~~~~~~-~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~ 68 (123)
T cd04672 2 KVDVRAAIFKDG------------KILLVREKSD-GLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNK 68 (123)
T ss_pred cceEEEEEEECC------------EEEEEEEcCC-CcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecccc
Confidence 556778887655 8999998886 999999999999999999999999999999986666666554322
Q ss_pred cCC--C-cEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHH
Q 030372 103 KSR--G-TFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMK 151 (178)
Q Consensus 103 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 151 (178)
... . ......+|.+...... ..+..|..++.|++++++.++.....+.
T Consensus 69 ~~~~~~~~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~l~~~~~~~ 119 (123)
T cd04672 69 HHPPPQPYQVYKLFFLCEILGGE-FKPNIETSEVGFFALDDLPPLSEKRNTE 119 (123)
T ss_pred ccCCCCceEEEEEEEEEEecCCc-ccCCCceeeeEEECHHHCcccccCCcch
Confidence 111 1 1223345666654332 2234678889999999998877554433
No 26
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.84 E-value=1.3e-19 Score=129.55 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=77.9
Q ss_pred EEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeec
Q 030372 24 QVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSK 103 (178)
Q Consensus 24 ~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~ 103 (178)
..|++|++..+ +|||++++.. +.|.+|||+++.|||+.+||+||++||||+.+....+++.+.+...
T Consensus 2 ~~~~~vi~~~~------------~vLlv~~~~~-~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 68 (125)
T cd04689 2 LRARAIVRAGN------------KVLLARVIGQ-PHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWH 68 (125)
T ss_pred eEEEEEEEeCC------------EEEEEEecCC-CCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeec
Confidence 46778887655 8999998776 8999999999999999999999999999999887777776654333
Q ss_pred CCCc--EEEEEEEEEEecccc---ccCCccceeeeEEEeHHHHH
Q 030372 104 SRGT--FYEGYMFPLLVTEQL---ELWPEKDVRQRIWMSVAEAR 142 (178)
Q Consensus 104 ~~~~--~~~~~~~~~~~~~~~---~~~~~~e~~~~~W~~~~el~ 142 (178)
.... ....++|.+...... ....+++..++.|++++++.
T Consensus 69 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 69 EKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred cCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 2222 223355666554321 22234467889999999964
No 27
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=9.9e-20 Score=130.26 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=81.0
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecC
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKS 104 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~ 104 (178)
.|.+|+++.+ +|||+++.+. +.|.+|||+++.|||+.+||+||++||||+.+....+++.+......
T Consensus 3 ~v~~vi~~~~------------~vLl~~~~~~-~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 69 (126)
T cd04688 3 RAAAIIIHNG------------KLLVQKNPDE-TFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTY 69 (126)
T ss_pred EEEEEEEECC------------EEEEEEeCCC-CeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeecc
Confidence 4666776655 8999988775 88999999999999999999999999999998887777665432222
Q ss_pred CC--cEEEEEEEEEEeccccccC-------CccceeeeEEEeHHHHHHHhccc
Q 030372 105 RG--TFYEGYMFPLLVTEQLELW-------PEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 105 ~~--~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
.. .....++|.+......... ++.++.++.|++++++..+...+
T Consensus 70 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 70 NGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred CCcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 21 2334566777665443221 34578889999999998655443
No 28
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.4e-19 Score=129.71 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=76.2
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC-CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG-SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFL 101 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~-~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~ 101 (178)
+..|++++++.+ .+|||++++.. ++.|.+|||+++.|||+.+||+||++||||+.+.....+....+.
T Consensus 2 ~~~~~~~v~~~~-----------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 70 (127)
T cd04670 2 TVGVGGLVLNEK-----------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAH 70 (127)
T ss_pred eeEEEEEEEcCC-----------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecC
Confidence 456777887654 28999987762 289999999999999999999999999999998766655443322
Q ss_pred ecCCCcEEEEEEEEEEecc--ccccCCccceeeeEEEeHHHHHHHhccchH
Q 030372 102 SKSRGTFYEGYMFPLLVTE--QLELWPEKDVRQRIWMSVAEAREACRHGWM 150 (178)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 150 (178)
..... . ...+|.+.... .......+|..++.|++++++.+......+
T Consensus 71 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~ 119 (127)
T cd04670 71 PGAFG-K-SDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEV 119 (127)
T ss_pred CCCcC-c-eeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHHH
Confidence 11111 1 11223333322 111223456778899999999765544333
No 29
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.83 E-value=3.2e-19 Score=131.19 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=85.1
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE---
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW--- 98 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~--- 98 (178)
+|.+|++|+++.+ .+|||+++...++.|.+|||++++||++.+||+||++||||+.+....++...
T Consensus 2 ~~~~v~~ii~~~~-----------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~ 70 (147)
T cd03671 2 YRPNVGVVLFNED-----------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDW 70 (147)
T ss_pred CCceEEEEEEeCC-----------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCe
Confidence 5778889998754 28999998887469999999999999999999999999999997665555432
Q ss_pred -EeeecCC--C-------cEEEEEEEEEEecc---ccccCC--ccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 99 -NFLSKSR--G-------TFYEGYMFPLLVTE---QLELWP--EKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 99 -~~~~~~~--~-------~~~~~~~~~~~~~~---~~~~~~--~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
.|..... . .....++|.+.... .....+ +.|..++.|++++++.+++.. ..+.++..+.
T Consensus 71 ~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~~~ 144 (147)
T cd03671 71 LRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYEAVL 144 (147)
T ss_pred eEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHHHHH
Confidence 2322110 0 01122344443332 122222 458889999999999998753 4555555443
No 30
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.2e-19 Score=130.28 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=82.1
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC--CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG--SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN 99 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~--~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~ 99 (178)
+|.++++|+++.+ ++|||+++.+. ++.|.+|||+++.|||+.+||+||++||||+++....++..+.
T Consensus 1 p~~~v~~ii~~~~-----------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~ 69 (129)
T cd04678 1 PRVGVGVFVLNPK-----------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTN 69 (129)
T ss_pred CceEEEEEEECCC-----------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEe
Confidence 4778889998764 28999988753 2889999999999999999999999999999987766666654
Q ss_pred eeecCCCcEEEEEEEEEEeccccccC---CccceeeeEEEeHHHHHHH
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQLELW---PEKDVRQRIWMSVAEAREA 144 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~W~~~~el~~~ 144 (178)
.........+...+|.+......... ..++..++.|++++++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 70 DVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 43332233444556666654432221 2345678899999999875
No 31
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.5e-19 Score=128.85 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=85.2
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE---
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN--- 99 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~--- 99 (178)
|..|++|+++.+ ++|||+++... +.|.+|||+++.|||+++||.||++||||+++....+++.+.
T Consensus 2 ~~~v~~ii~~~~-----------~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 69 (129)
T cd04676 2 LPGVTAVVRDDE-----------GRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPV 69 (129)
T ss_pred cceEEEEEECCC-----------CeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeeccc
Confidence 566778887653 28999998887 899999999999999999999999999999976655543321
Q ss_pred --eeecCCCc-EEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHHH
Q 030372 100 --FLSKSRGT-FYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEALD 155 (178)
Q Consensus 100 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 155 (178)
+.+..... .....+|.+.........+..+..+++|++++++..+..++.++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 70 HVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred ceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 11111111 223344555444333223555778889999999999887777776654
No 32
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.4e-19 Score=127.03 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=73.1
Q ss_pred EEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccccCC
Q 030372 47 EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWP 126 (178)
Q Consensus 47 ~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
+|||+++.+ +.|.+|||++++|||+.+||.||++||||+.+....++..+.. . . ...++|.+.........+
T Consensus 12 ~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~--~--~--~~~~~f~~~~~~~~~~~~ 83 (112)
T cd04667 12 RVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG--G--S--TRHHVFVASVPPSAQPKP 83 (112)
T ss_pred EEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC--C--C--EEEEEEEEEcCCcCCCCC
Confidence 899998764 7899999999999999999999999999998765555544321 1 1 223456665544333345
Q ss_pred ccceeeeEEEeHHHHHHHhccchHHH
Q 030372 127 EKDVRQRIWMSVAEAREACRHGWMKE 152 (178)
Q Consensus 127 ~~e~~~~~W~~~~el~~~~~~~~~~~ 152 (178)
.++..++.|++++++..+..++..+.
T Consensus 84 ~~e~~~~~W~~~~el~~~~~~~~~~~ 109 (112)
T cd04667 84 SNEIADCRWLSLDALGDLNASAATRL 109 (112)
T ss_pred chheeEEEEecHHHhhhcccchhhhh
Confidence 56788999999999998877665544
No 33
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.3e-19 Score=129.00 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=77.5
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE---
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN--- 99 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~--- 99 (178)
+..|++++++.+ .+|||+++.+. +.|.+|||++++|||+.+||+||++||||+.+....++..+.
T Consensus 7 ~~~~~~~v~~~~-----------~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~ 74 (132)
T cd04677 7 LVGAGVILLNEQ-----------GEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKE 74 (132)
T ss_pred ccceEEEEEeCC-----------CCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCc
Confidence 444556666543 28999988877 899999999999999999999999999999987766665432
Q ss_pred -eeecCCCc-EEEEEEEEEE-eccccccCCccceeeeEEEeHHHHHHHhcc
Q 030372 100 -FLSKSRGT-FYEGYMFPLL-VTEQLELWPEKDVRQRIWMSVAEAREACRH 147 (178)
Q Consensus 100 -~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 147 (178)
|.....+. .....+|.+. ........+.++..++.|++++++..++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 75 FYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred eeecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 22111122 2223333333 332222345567889999999999877643
No 34
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.82 E-value=3.8e-19 Score=129.79 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=70.8
Q ss_pred EEEEEEeeCC----CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeee-EE-----EeeecCCC--cEEEEE-E
Q 030372 47 EVLVITSQKG----SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELG-KW-----NFLSKSRG--TFYEGY-M 113 (178)
Q Consensus 47 ~vLLv~~~~~----~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~-~~-----~~~~~~~~--~~~~~~-~ 113 (178)
+|||+++... +|.|.+|||++++|||+.+||+||++||||+.+....... .+ ...+.... ..+..+ +
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLI 95 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEE
Confidence 8999997653 2789999999999999999999999999999864432111 01 01111111 122222 2
Q ss_pred EEEEeccccccCCccceeeeEEEeHHHHHHHhccchHHHHHH
Q 030372 114 FPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWMKEALD 155 (178)
Q Consensus 114 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 155 (178)
|.+.... .....++|+.++.|++++++.++...+..+..+.
T Consensus 96 ~~~~~~~-~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~ 136 (141)
T PRK15472 96 FDCVSAN-RDVKINEEFQDYAWVKPEDLVHYDLNVATRKTLR 136 (141)
T ss_pred EEeecCC-CcccCChhhheEEEccHHHhccccccHHHHHHHH
Confidence 3332222 2233446788999999999999877776666654
No 35
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.82 E-value=1.8e-19 Score=129.85 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=82.3
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW 98 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~ 98 (178)
.++.+|++|+++.+ +|||+++...+ +.|.+|||+++.||++++||+||++||||+++....++..+
T Consensus 11 ~~~~~v~~ii~~~~------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~ 78 (130)
T cd04511 11 NPKIIVGCVPEWEG------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY 78 (130)
T ss_pred CCcEEEEEEEecCC------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE
Confidence 45777888887655 89999986432 78999999999999999999999999999998766666655
Q ss_pred EeeecCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHH-HHhccchH
Q 030372 99 NFLSKSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAR-EACRHGWM 150 (178)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~ 150 (178)
... ......++|.+...... .....+..++.|++++++. ..+.++.+
T Consensus 79 ~~~----~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~~~ 126 (130)
T cd04511 79 SVP----HISQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFPTV 126 (130)
T ss_pred ecC----CceEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhcccccc
Confidence 432 12234456777665432 2344577888999999996 23444443
No 36
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.3e-19 Score=127.04 Aligned_cols=107 Identities=24% Similarity=0.198 Sum_probs=75.5
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeec
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSK 103 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~ 103 (178)
.|++|+++.+ ++|||+++.+.. +.|.||||+++.|||+.+||+||++||||++++...+++.+.+.
T Consensus 2 ~~~~ii~~~~-----------~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~-- 68 (121)
T cd04669 2 RASIVIINDQ-----------GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQN-- 68 (121)
T ss_pred ceEEEEEeCC-----------CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeC--
Confidence 3667777652 289999986542 67999999999999999999999999999999777777665542
Q ss_pred CCCcEEEEEEEEEEecccccc---------CCccceeeeEEEeHHHHHHHhccc
Q 030372 104 SRGTFYEGYMFPLLVTEQLEL---------WPEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~---------~~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
. . ..++|.+........ ..+.+..++.|+++++++.+...+
T Consensus 69 -~-~--~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 69 -G-R--TEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred -C-c--EEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 1 1 234455544322110 012345678999999998876544
No 37
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.3e-19 Score=126.70 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=74.3
Q ss_pred EEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeecc--ceeeeEEEeeecCC-CcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV--EHELGKWNFLSKSR-GTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 123 (178)
++||++++.. +.|.+|||++++|||+++||+||++||||+.+.. ..+++.+.+..... ......++|.+.... .
T Consensus 13 ~vLl~~r~~~-~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~ 89 (118)
T cd04690 13 RVLLVRKRGT-DVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTG--E 89 (118)
T ss_pred eEEEEEECCC-CcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccC--C
Confidence 8999998876 8999999999999999999999999999999877 66777665442221 123345566665544 3
Q ss_pred cCCccceeeeEEEeHHHHHHHhccc
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
..+..+..++.|++++++......+
T Consensus 90 ~~~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 90 PVPAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred cCCCchhhccEEecHHHccccccCc
Confidence 3345578888999999986655443
No 38
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=4.8e-19 Score=125.49 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=74.2
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC---CCCEEeccccCCCCCCHHHHHHHHHhhhhceeecc--ceeeeEEE
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG---SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNV--EHELGKWN 99 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~---~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~--~~~~~~~~ 99 (178)
.|++++++.+ +|||+++.+. ++.|.+|||+++.|||+.+||+||++||||+.+.. ..+++.+.
T Consensus 2 ~v~~vi~~~~------------~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~ 69 (120)
T cd04683 2 AVYVLLRRDD------------EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMH 69 (120)
T ss_pred cEEEEEEECC------------EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEE
Confidence 3566666544 8999997753 27899999999999999999999999999999763 34555544
Q ss_pred eeecCCCcEEEEEEEEEEecccccc-CCccceeeeEEEeHHHHHHHh
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQLEL-WPEKDVRQRIWMSVAEAREAC 145 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~ 145 (178)
+.... .......+|.+........ ...++..+++|++++++...+
T Consensus 70 ~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 70 RRTED-IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred ecCCC-CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence 43221 1223334455544332222 233467889999999997654
No 39
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=4.6e-19 Score=125.57 Aligned_cols=95 Identities=21% Similarity=0.180 Sum_probs=68.9
Q ss_pred EEEEEEeeCC----CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEecccc
Q 030372 47 EVLVITSQKG----SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQL 122 (178)
Q Consensus 47 ~vLLv~~~~~----~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (178)
+|||++|... ++.|.||||++++|||+++||+||++||||+.+....++..+.+... ......+|.+......
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 88 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS---ELQLLHYYVVTFWQGE 88 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC---CeEEEEEEEEEEecCC
Confidence 8999997643 27899999999999999999999999999999654555555544322 1223345555443322
Q ss_pred ccCCccceeeeEEEeHHHHHHHhc
Q 030372 123 ELWPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 123 ~~~~~~e~~~~~W~~~~el~~~~~ 146 (178)
. ..+|..++.|+++++++....
T Consensus 89 ~--~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 89 I--PAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred C--CcccccccEEcCHHHcchhhh
Confidence 2 235788999999999987654
No 40
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.81 E-value=1.2e-18 Score=126.34 Aligned_cols=127 Identities=21% Similarity=0.150 Sum_probs=87.7
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN 99 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~ 99 (178)
+.+|++++++.+ .++||+++++.+ +.|.+|||+++.|||+.+||+||++||||+.+.....+..+.
T Consensus 2 ~~~v~v~~~~~~-----------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 70 (137)
T cd03424 2 PDAVAVLPYDDD-----------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFY 70 (137)
T ss_pred CCEEEEEEEcCC-----------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEe
Confidence 456778887764 289999865432 579999999999999999999999999999986555555543
Q ss_pred eeecCCCcEEEEEEEEEEecccc--ccCCccceeeeEEEeHHHHHHHhccchH--HHHHHHHHHHHh
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQL--ELWPEKDVRQRIWMSVAEAREACRHGWM--KEALDILVERLS 162 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~~--~~~l~~~~~~l~ 162 (178)
+.. .......++|.+...... ....+.|..++.|++++++.+++....+ ...+-.++.+++
T Consensus 71 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 135 (137)
T cd03424 71 PSP--GFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGEIIDDATLIALLLWLA 135 (137)
T ss_pred cCC--cccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 321 112223456666554432 2334457888999999999999876552 234444445444
No 41
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.81 E-value=1.3e-18 Score=125.68 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=84.7
Q ss_pred EEEEEEeeCC---CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKG---SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~---~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
+|||++|.+. +|.|.||||+++.|||+.+|++||++||||+.+....+++.+.+..++. .....+|.+......
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~- 92 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGR--RIHLHAWHVPDFHGE- 92 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCc--EEEEEEEEEEEecCc-
Confidence 8999988653 2789999999999999999999999999999987766666655554332 233445554433221
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHHHHHHHHHhcc
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEALDILVERLSSR 164 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~ 164 (178)
....+..++.|++++++.++...+.++.+++.+.+..+.+
T Consensus 93 -~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~~ 132 (135)
T PRK10546 93 -LQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRAAR 132 (135)
T ss_pred -ccccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhccC
Confidence 1223566789999999999888888899998887765544
No 42
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.6e-19 Score=126.26 Aligned_cols=97 Identities=21% Similarity=0.081 Sum_probs=68.7
Q ss_pred EEEEEEeeCC-----CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccc
Q 030372 47 EVLVITSQKG-----SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQ 121 (178)
Q Consensus 47 ~vLLv~~~~~-----~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (178)
+|||+++.+. +|.|.+|||+++.|||+++||+||++||||+.+..........+..... ....++|.+.....
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~~ 90 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASP--PGTEHVFVVPLTAR 90 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCC--CceEEEEEEEEecC
Confidence 8999988654 2789999999999999999999999999999976433222222332211 22345566555433
Q ss_pred c-ccCCccceeeeEEEeHHHHHHHh
Q 030372 122 L-ELWPEKDVRQRIWMSVAEAREAC 145 (178)
Q Consensus 122 ~-~~~~~~e~~~~~W~~~~el~~~~ 145 (178)
. .....+|..++.|++++++.+..
T Consensus 91 ~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 91 EDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred CCccccCchhheeecccHHHHhhcc
Confidence 2 33455678889999999997654
No 43
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.80 E-value=9.6e-19 Score=126.39 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=71.4
Q ss_pred eEEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEecccccc
Q 030372 46 IEVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLEL 124 (178)
Q Consensus 46 ~~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
.+|||++++..+ +.|.+|||+++.|||+++||+||++||||+.+....+++.+.+... ....+.|.+........
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----~~~~~~f~~~~~~~~~~ 87 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP----SSLMLGFTAEADSGEIV 87 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCCC----ceEEEEEEEEEcCCccc
Confidence 489999987643 8899999999999999999999999999999876666665433322 12234566655543323
Q ss_pred CCccceeeeEEEeHHHHHHH
Q 030372 125 WPEKDVRQRIWMSVAEAREA 144 (178)
Q Consensus 125 ~~~~e~~~~~W~~~~el~~~ 144 (178)
..++|+.++.|++++++.++
T Consensus 88 ~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 88 VDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred CCchhhhccEeecHHHHhhc
Confidence 34457788999999999885
No 44
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.8e-18 Score=124.89 Aligned_cols=108 Identities=22% Similarity=0.346 Sum_probs=74.1
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceee-ccceeeeEEEeee-
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMG-NVEHELGKWNFLS- 102 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~-~~~~~~~~~~~~~- 102 (178)
+|++|+++.+ +|||+++++. +.|.||||++++|||+.+||+||++||||+.+ .....++.+....
T Consensus 2 ~~~~ii~~~~------------~vLLv~~~~~-~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~ 68 (131)
T cd04686 2 AVRAIILQGD------------KILLLYTKRY-GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRP 68 (131)
T ss_pred cEEEEEEECC------------EEEEEEEcCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeecc
Confidence 5778888766 8999998876 78999999999999999999999999999986 4455556553211
Q ss_pred -cCC-C-c-EEEEEEEEEEeccccc--cCCccce---eeeEEEeHHHHHHHh
Q 030372 103 -KSR-G-T-FYEGYMFPLLVTEQLE--LWPEKDV---RQRIWMSVAEAREAC 145 (178)
Q Consensus 103 -~~~-~-~-~~~~~~~~~~~~~~~~--~~~~~e~---~~~~W~~~~el~~~~ 145 (178)
... . . ....++|.+....... .....+. .+..|++++++....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 69 WRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred ccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 111 1 1 2234566666543221 1111122 357999999997643
No 45
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.79 E-value=1.5e-18 Score=138.46 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=78.0
Q ss_pred EEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccccC
Q 030372 47 EVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELW 125 (178)
Q Consensus 47 ~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
+|||++++..+ +.|.+|||++++|||+++||+||++||||+++....+++...+.+.. ...+.|.+.........
T Consensus 144 ~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~p~----~lm~~f~a~~~~~~~~~ 219 (256)
T PRK00241 144 EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPFPH----SLMLGFHADYDSGEIVF 219 (256)
T ss_pred EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecCCC----eEEEEEEEEecCCcccC
Confidence 89999877554 78999999999999999999999999999998777777765544332 23455666654433333
Q ss_pred CccceeeeEEEeHHHHHHHhccchH-HHHHHH
Q 030372 126 PEKDVRQRIWMSVAEAREACRHGWM-KEALDI 156 (178)
Q Consensus 126 ~~~e~~~~~W~~~~el~~~~~~~~~-~~~l~~ 156 (178)
..+|..++.|+++++++.+.....+ +.++..
T Consensus 220 ~~~Ei~~a~W~~~del~~lp~~~sia~~li~~ 251 (256)
T PRK00241 220 DPKEIADAQWFRYDELPLLPPSGTIARRLIED 251 (256)
T ss_pred CcccEEEEEEECHHHCcccCCchHHHHHHHHH
Confidence 4457889999999999877655443 334433
No 46
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.79 E-value=8.5e-19 Score=130.44 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=77.5
Q ss_pred EEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEeccccCCCC-CCHHHHHHHHHhhhhceeeccceeeeEE
Q 030372 24 QVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFPKGGWELD-ETVKEAALRESFEEAGVMGNVEHELGKW 98 (178)
Q Consensus 24 ~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lPgG~ve~g-Es~~eaa~REv~EEtGl~~~~~~~~~~~ 98 (178)
.++.+|++... ++..+|||++|... ++.|.+|||+++.| ||+++||+||++||||+.+....+++.+
T Consensus 2 ~~av~v~l~~~--------~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~ 73 (157)
T cd03426 2 RAAVLVLLVER--------EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRL 73 (157)
T ss_pred ceEEEEEEEeC--------CCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEEC
Confidence 45566666655 34568999998763 37899999999999 9999999999999999998776666654
Q ss_pred EeeecCCCcEEEEEEEEEEeccc-cccCCccceeeeEEEeHHHHHHH
Q 030372 99 NFLSKSRGTFYEGYMFPLLVTEQ-LELWPEKDVRQRIWMSVAEAREA 144 (178)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~ 144 (178)
........ ....+|.+..... ......+|..++.|++++++.+.
T Consensus 74 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 74 PPYYTRSG--FVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred CCccccCC--CEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 32222222 2234444444332 22223347888999999999875
No 47
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.2e-18 Score=123.29 Aligned_cols=102 Identities=25% Similarity=0.213 Sum_probs=73.4
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeee
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLS 102 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~ 102 (178)
+|++++++.+ ++|||+++.+.+ +.|.+|||+++.|||+.+||+||++||||+++....++......
T Consensus 2 ~~~~vv~~~~-----------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~- 69 (123)
T cd04671 2 IVAAVILNNQ-----------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG- 69 (123)
T ss_pred EEEEEEEcCC-----------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC-
Confidence 4677777643 289999876543 78999999999999999999999999999998777666543211
Q ss_pred cCCCcEEEEEEEEEEeccccc-c--CCccceeeeEEEeHHHHH
Q 030372 103 KSRGTFYEGYMFPLLVTEQLE-L--WPEKDVRQRIWMSVAEAR 142 (178)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~e~~~~~W~~~~el~ 142 (178)
..+..++|.+....... . .++.+..+++|+++++++
T Consensus 70 ----~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 70 ----GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred ----CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCC
Confidence 12334566666543221 1 133467789999999994
No 48
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.78 E-value=6.8e-18 Score=125.52 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=85.8
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE--
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW-- 98 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~-- 98 (178)
.+|.++++++++.+ + +|||+++...++.|.+|||++++|||+++||.||++||||+.+....+++.+
T Consensus 6 ~~~~~v~~~i~~~~---------g--~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~ 74 (156)
T PRK00714 6 GYRPNVGIILLNRQ---------G--QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRD 74 (156)
T ss_pred CCCCeEEEEEEecC---------C--EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCC
Confidence 47888999998765 2 8999998765588999999999999999999999999999997655555543
Q ss_pred --EeeecCC-----CcE---EEEEEEEEEeccc-c--cc--CCccceeeeEEEeHHHHHHHhccchHHHHHHHHHHH
Q 030372 99 --NFLSKSR-----GTF---YEGYMFPLLVTEQ-L--EL--WPEKDVRQRIWMSVAEAREACRHGWMKEALDILVER 160 (178)
Q Consensus 99 --~~~~~~~-----~~~---~~~~~~~~~~~~~-~--~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 160 (178)
.|..... ... ....+|.+..... . .. .+++|..+++|++++++++++.. ..+.++..+.+.
T Consensus 75 ~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~-~~r~~~~~~~~~ 150 (156)
T PRK00714 75 WLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVP-FKRDVYRRVLKE 150 (156)
T ss_pred eEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchh-hhHHHHHHHHHH
Confidence 2221110 000 1234555554221 1 11 23357889999999999987642 224444444433
No 49
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.78 E-value=3.4e-18 Score=123.70 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred CeEEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc----eeeeEEEeeecCCC-----cEEEEEEE
Q 030372 45 DIEVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE----HELGKWNFLSKSRG-----TFYEGYMF 114 (178)
Q Consensus 45 ~~~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~ 114 (178)
..++||+++.+.. +.|.||||++++|||+.+||.||++||||+.+... ..++.+.+.+.... .....++|
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 91 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFF 91 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEE
Confidence 4489999987542 68999999999999999999999999999986542 12233333322111 12345677
Q ss_pred EEEeccccccCCccceeeeEEEeHHHHHHHhcc
Q 030372 115 PLLVTEQLELWPEKDVRQRIWMSVAEAREACRH 147 (178)
Q Consensus 115 ~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 147 (178)
.+...++.. ...+++.++.|++++++..++..
T Consensus 92 ~~~~~~g~~-~~~~e~~~~~W~~~~el~~~l~~ 123 (132)
T cd04661 92 KARYMSGQF-ELSQNQVDFKWLAKEELQKYLNP 123 (132)
T ss_pred EEEEecCcc-ccCCCcceeEecCHHHHHhhcCH
Confidence 776654432 23467889999999999997754
No 50
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.3e-18 Score=121.94 Aligned_cols=99 Identities=23% Similarity=0.209 Sum_probs=68.7
Q ss_pred EEEEEEeeCC----CCCEEec-cccCCCCCCHHHHHHHHHhhhhceeeccce--eeeEEEeeecCCCcEEEEEEEEEEec
Q 030372 47 EVLVITSQKG----SQGMMFP-KGGWELDETVKEAALRESFEEAGVMGNVEH--ELGKWNFLSKSRGTFYEGYMFPLLVT 119 (178)
Q Consensus 47 ~vLLv~~~~~----~~~W~lP-gG~ve~gEs~~eaa~REv~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (178)
+|||++|... +|.|.+| ||+++.|||+ +||+||++||||+.+.... .+..+.+... .....++|.+...
T Consensus 13 ~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 88 (127)
T cd04693 13 ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADVE 88 (127)
T ss_pred eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecCc
Confidence 8999887643 3789998 9999999999 9999999999999976543 3444433321 1222334444333
Q ss_pred cccccCCccceeeeEEEeHHHHHHHhccch
Q 030372 120 EQLELWPEKDVRQRIWMSVAEAREACRHGW 149 (178)
Q Consensus 120 ~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 149 (178)
......+.+|..++.|++++++.+++....
T Consensus 89 ~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 89 IGKLILQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred ccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 322233445788899999999999886543
No 51
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.77 E-value=1.2e-17 Score=138.46 Aligned_cols=125 Identities=19% Similarity=0.128 Sum_probs=83.8
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeee---
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELG--- 96 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~--- 96 (178)
....|++|+++.+ +|||+++...+ |.|.+|||++++|||+++||+||++||||+++....+.+
T Consensus 202 ~~vtv~avv~~~g------------~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~ 269 (340)
T PRK05379 202 TFVTVDAVVVQSG------------HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIR 269 (340)
T ss_pred cceEEEEEEEECC------------EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeee
Confidence 3467778887654 89999987644 779999999999999999999999999999865443222
Q ss_pred ---EEEeeecCCCcEEEEEEEEEEeccc--cccCCccceeeeEEEeHHHHHHH--hccchHHHHHHHHH
Q 030372 97 ---KWNFLSKSRGTFYEGYMFPLLVTEQ--LELWPEKDVRQRIWMSVAEAREA--CRHGWMKEALDILV 158 (178)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~~ 158 (178)
.|.++...........+|.+..... ......++..++.|++++++..+ ..+.....++..++
T Consensus 270 ~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 270 DQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred eeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 2222221111222334454444322 12334557889999999999875 34456666666654
No 52
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.4e-17 Score=122.04 Aligned_cols=116 Identities=15% Similarity=0.038 Sum_probs=79.1
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEe-ccccCCCCCCHHHHHHHHHhhhhceeecc--ceee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMF-PKGGWELDETVKEAALRESFEEAGVMGNV--EHEL 95 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~l-PgG~ve~gEs~~eaa~REv~EEtGl~~~~--~~~~ 95 (178)
+.++.+++++.. ++..+|||.+|... ||.|.+ |||++++|||+.+||+||++||||+.+.. ..++
T Consensus 2 h~~v~~~v~~~~--------~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~ 73 (144)
T cd04692 2 HRTFHCWIITKD--------EGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPL 73 (144)
T ss_pred ceEEEEEEEEcc--------CCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEe
Confidence 456677777765 44568888887653 378998 59999999999999999999999998643 3455
Q ss_pred eEEEeeec-CCC--cEEEEEEEEEEecc--ccccCCccceeeeEEEeHHHHHHHhc
Q 030372 96 GKWNFLSK-SRG--TFYEGYMFPLLVTE--QLELWPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 96 ~~~~~~~~-~~~--~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~ 146 (178)
+.+.+... ... ......+|.+.... ......++|..++.|++++++.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 74 GTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred eEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence 55544432 111 11223455554432 22223445788999999999998874
No 53
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.5e-17 Score=119.29 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=78.6
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEe-ccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMF-PKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN 99 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~l-PgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~ 99 (178)
++.+++++.+ .+|||++|... +|.|++ |||+++.||++.+||+||++||||+.+.....+..+.
T Consensus 2 ~~~v~i~~~~-----------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~ 70 (126)
T cd04697 2 ATYIFVFNSE-----------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFY 70 (126)
T ss_pred eEEEEEEcCC-----------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEE
Confidence 4667777654 28988876643 377998 6999999999999999999999999987556666665
Q ss_pred eeecCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccch
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGW 149 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 149 (178)
+... .......+|.+..... .....+|..++.|++++++.+++....
T Consensus 71 ~~~~--~~~~~~~~f~~~~~~~-~~~~~~E~~~~~w~~~~el~~~~~~~~ 117 (126)
T cd04697 71 YDTD--GNRVWGKVFSCVYDGP-LKLQEEEVEEITWLSINEILQFKEGEN 117 (126)
T ss_pred ecCC--CceEEEEEEEEEECCC-CCCCHhHhhheEEcCHHHHHHHhhcCc
Confidence 5432 2223334555544322 223345778999999999999886543
No 54
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.75 E-value=2.4e-17 Score=123.54 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=80.0
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEec-cccCCCCCCHHHHHHHHHhhhhceeeccceee-
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFP-KGGWELDETVKEAALRESFEEAGVMGNVEHEL- 95 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lP-gG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~- 95 (178)
++.+|++++++.+ .+|||++|... ||.|.+| ||++++|||+++||+||++||||+.+....++
T Consensus 29 ~~~~v~v~i~~~~-----------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~ 97 (165)
T cd02885 29 LHRAFSVFLFNSK-----------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVL 97 (165)
T ss_pred ceeEEEEEEEcCC-----------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhcc
Confidence 3777888777654 27999887653 3789986 89999999999999999999999998766554
Q ss_pred eEEEeeecCCC-c--EEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhcc
Q 030372 96 GKWNFLSKSRG-T--FYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRH 147 (178)
Q Consensus 96 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 147 (178)
..+.|...... . ....++|.+...... ..+.+|..++.|++++++..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~-~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 98 PRFRYRAPDDGGLVEHEIDHVFFARADVTL-IPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred ceEEEEEEcCCCceeeEEEEEEEEEeCCCC-CCCccceeEEEEECHHHHHHHHHh
Confidence 44444432211 1 122345555543322 234457788999999999998854
No 55
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3.5e-17 Score=116.83 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=65.7
Q ss_pred EEEEEEeeCC----CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEecccc
Q 030372 47 EVLVITSQKG----SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQL 122 (178)
Q Consensus 47 ~vLLv~~~~~----~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (178)
+|||+++... ++.|.+|||+++.|||+.+||+||++||||+.+.....+....+...........++|.+.....
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG- 92 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC-
Confidence 8999988753 26899999999999999999999999999999876554432222211111122223344333222
Q ss_pred ccCCccceeeeEEEeHHHHHHHh
Q 030372 123 ELWPEKDVRQRIWMSVAEAREAC 145 (178)
Q Consensus 123 ~~~~~~e~~~~~W~~~~el~~~~ 145 (178)
.....++..++.|++++++..+.
T Consensus 93 ~~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 93 AVKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred cccCChhheEEEEecHHHhhhhh
Confidence 22234467788999999986544
No 56
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.74 E-value=2.5e-17 Score=117.72 Aligned_cols=105 Identities=22% Similarity=0.237 Sum_probs=69.4
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEee------CCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEE
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQ------KGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKW 98 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~------~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~ 98 (178)
++|+|+|+.+ ++..+|||+++. +..+.|.+|||+++.||++.+||+||++||||+.+. ...+...
T Consensus 2 ~~g~v~~~~~--------~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~ 72 (126)
T cd04662 2 SAGILLYRFR--------DGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLG 72 (126)
T ss_pred eEEEEEEEEc--------CCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEE
Confidence 6899999877 566789999852 222789999999999999999999999999999865 2222221
Q ss_pred EeeecCCC-------------cEEEEEEEEEEeccccccCC-ccceeeeEEEeH
Q 030372 99 NFLSKSRG-------------TFYEGYMFPLLVTEQLELWP-EKDVRQRIWMSV 138 (178)
Q Consensus 99 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~ 138 (178)
.+...... ......+|.+.......... .+|..+++|+++
T Consensus 73 ~~~~~~~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 73 SLKQSGGKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred EEECCCCeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 12211111 11223445555443333332 467788899973
No 57
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.73 E-value=1.4e-16 Score=121.17 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=77.7
Q ss_pred EEEEEEeeCC----CCCE-EeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccc
Q 030372 47 EVLVITSQKG----SQGM-MFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQ 121 (178)
Q Consensus 47 ~vLLv~~~~~----~~~W-~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (178)
+|||.++... ++.| .+|||++++|||+.+||+||++||||+.+.....++.+.+... .......+|.+... .
T Consensus 50 ~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~-~ 126 (180)
T PRK15393 50 KILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDE--NCRVWGALFSCVSH-G 126 (180)
T ss_pred eEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCC--CceEEEEEEEEEeC-C
Confidence 8998877643 1345 6899999999999999999999999998655555555544422 22222334544432 2
Q ss_pred cccCCccceeeeEEEeHHHHHHHh--ccchHHHHHHHHHHHHhccc
Q 030372 122 LELWPEKDVRQRIWMSVAEAREAC--RHGWMKEALDILVERLSSRV 165 (178)
Q Consensus 122 ~~~~~~~e~~~~~W~~~~el~~~~--~~~~~~~~l~~~~~~l~~~~ 165 (178)
.......|..++.|++++++.++. ..+....++..++.+..++.
T Consensus 127 ~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (180)
T PRK15393 127 PFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNAKNE 172 (180)
T ss_pred CCCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhcccc
Confidence 222234578899999999999874 23455566666666665543
No 58
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.73 E-value=1.2e-16 Score=114.01 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=76.0
Q ss_pred EEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
+|||.+|...+ |.|.||||++++||++.+||.||++||||+.+.....+..+.+..++. .....+|.+......
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~- 93 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDR--HITLWFWLVESWEGE- 93 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCc--EEEEEEEEEEEECCc-
Confidence 89999887642 789999999999999999999999999999876555565555554432 233344544432221
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHHHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEALDILV 158 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 158 (178)
. ...|..+..|++++++........++.+++.+.
T Consensus 94 ~-~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (129)
T PRK10776 94 P-WGKEGQPGRWVSQVALNADEFPPANEPIIAKLK 127 (129)
T ss_pred c-CCccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence 1 223566779999999988766666666666553
No 59
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.73 E-value=4.6e-17 Score=114.03 Aligned_cols=113 Identities=25% Similarity=0.315 Sum_probs=80.9
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC-CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeec
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG-SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSK 103 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~-~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~ 103 (178)
++++++++.+ .++||+++... ++.|.+|||+++.||++.++|+||+.||+|+.+........+.+...
T Consensus 2 ~~~~i~~~~~-----------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~ 70 (123)
T cd02883 2 AVGAVILDED-----------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESP 70 (123)
T ss_pred ceEEEEECCC-----------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeecc
Confidence 4566666552 28999988872 28999999999999999999999999999998765556666555543
Q ss_pred CCCcEEEEEEEEEEecccccc-CCccceeeeEEEeHHHHHHHhccc
Q 030372 104 SRGTFYEGYMFPLLVTEQLEL-WPEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
........++|.+........ ..+.+..+.+|++++++.......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~ 116 (123)
T cd02883 71 DEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSP 116 (123)
T ss_pred CCCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccccccc
Confidence 323345566777766543321 334466788999999998755443
No 60
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.72 E-value=2.8e-16 Score=110.84 Aligned_cols=106 Identities=18% Similarity=0.082 Sum_probs=77.3
Q ss_pred EEEEEEeeCC---CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKG---SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~---~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
++||+++.+. ++.|.||||+++.+|++.+||.||+.||||+.+.....++.+.+..++ ......+|.+......
T Consensus 14 ~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~- 90 (124)
T cd03425 14 RILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPD--KRVTLHVFLVELWSGE- 90 (124)
T ss_pred EEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCC--CeEEEEEEEEeeeCCC-
Confidence 8999987654 278999999999999999999999999999997766666665555432 2334455655443221
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEALDI 156 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 156 (178)
....+..+..|++++++..+.....++.++..
T Consensus 91 -~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 91 -PQLLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred -cccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 12335678899999999987766666666553
No 61
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.71 E-value=3.1e-16 Score=119.62 Aligned_cols=104 Identities=20% Similarity=0.050 Sum_probs=75.3
Q ss_pred EEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccc-c
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQ-L 122 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 122 (178)
+|||+++...+ ..|+||||.+++||++++||+||++||||+.+....+++.+....... ....++|.+..... .
T Consensus 60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~--~~~~~~f~a~~~~~~~ 137 (185)
T PRK11762 60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYF--SSKMNIVLAEDLYPER 137 (185)
T ss_pred EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc--CcEEEEEEEEcccccc
Confidence 79999876542 459999999999999999999999999999988888887765433222 22334555543222 1
Q ss_pred ccCCccceeeeEEEeHHHHHHHhccchHHH
Q 030372 123 ELWPEKDVRQRIWMSVAEAREACRHGWMKE 152 (178)
Q Consensus 123 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 152 (178)
....+.|..++.|++++++.+++....+.+
T Consensus 138 ~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d 167 (185)
T PRK11762 138 LEGDEPEPLEVVRWPLADLDELLARPDFSE 167 (185)
T ss_pred CCCCCCceeEEEEEcHHHHHHHHHcCCCCc
Confidence 222344667889999999999987665543
No 62
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.71 E-value=4.1e-16 Score=118.88 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=77.7
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEec-cccCCCCCCHHHHHHHHHhhhhceeeccc-ee
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFP-KGGWELDETVKEAALRESFEEAGVMGNVE-HE 94 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lP-gG~ve~gEs~~eaa~REv~EEtGl~~~~~-~~ 94 (178)
..+.++++++++.+ .+|||+++... ||.|.+| ||++++|||+++||+||++||||+.+... ..
T Consensus 32 ~~h~av~v~i~~~~-----------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~ 100 (184)
T PRK03759 32 PLHLAFSCYLFDAD-----------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELV 100 (184)
T ss_pred CeeeEEEEEEEcCC-----------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccc
Confidence 46777777777644 27999986532 3667765 89999999999999999999999987533 33
Q ss_pred eeEEEeeecC-CCcE--EEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccc
Q 030372 95 LGKWNFLSKS-RGTF--YEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 95 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
+..+.|.... .... ...++|.+.... ......+|..++.|++++++.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~vf~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 101 LPDFRYRATDPNGIVENEVCPVFAARVTS-ALQPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred cceEEEEEecCCCceeeEEEEEEEEEECC-CCCCChhHeeeEEEECHHHHHHHHHhC
Confidence 4444433211 1111 223456665542 222234578889999999999988543
No 63
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=4.1e-16 Score=111.35 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=74.4
Q ss_pred EEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
+|||.+|.... +.|.||||+++.|||+++|++||+.||||+.+.....++.+.+.+++. ....++|.+.......
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~~~~~~~ 94 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRH--ITLWFWLLERWEGGPP 94 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCc--EEEEEEEEEEEcCCCc
Confidence 78888876542 689999999999999999999999999999977666666655544332 2334455544432211
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEALDI 156 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 156 (178)
...+..+..|++++++.+......++.+++.
T Consensus 95 --~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~ 125 (128)
T TIGR00586 95 --GKEGQPEEWWVLVGLLADDFFPAANPVIIKL 125 (128)
T ss_pred --CcccccccEEeCHHHCCccCCCCCCHHHHHH
Confidence 1224556799999999987665555555543
No 64
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.71 E-value=2e-16 Score=112.38 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=72.2
Q ss_pred EEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccccCC
Q 030372 47 EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWP 126 (178)
Q Consensus 47 ~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
++||+++++ +.|.+|||+++.||++++||+||++||||+.+....+++.+.+.... ......+|.+.........+
T Consensus 12 ~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~--~~~~~~~y~a~~~~~~~~~~ 87 (118)
T cd04665 12 GLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFE--SGFETLVYPAVSAQLEEKAS 87 (118)
T ss_pred EEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCC--CcEEEEEEEEEEEecccccc
Confidence 899998774 67999999999999999999999999999998777888876655322 23345677777766555557
Q ss_pred ccceeeeEEEeHHHH
Q 030372 127 EKDVRQRIWMSVAEA 141 (178)
Q Consensus 127 ~~e~~~~~W~~~~el 141 (178)
..|+....|++.+..
T Consensus 88 ~~E~~~~~~~~~~~~ 102 (118)
T cd04665 88 YLETDGPVLFKNEPE 102 (118)
T ss_pred cccccCcEEeccCCc
Confidence 778888999987644
No 65
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=4.1e-16 Score=114.37 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=68.1
Q ss_pred EEEEEEeeCC----CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc----eeeeEEEeeecC----CC-cEEEEEE
Q 030372 47 EVLVITSQKG----SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE----HELGKWNFLSKS----RG-TFYEGYM 113 (178)
Q Consensus 47 ~vLLv~~~~~----~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~----~~~~~~~~~~~~----~~-~~~~~~~ 113 (178)
+|||+++... ++.|.+|||++++||++.+||+||++||||+.+... .+++.+.+.+.. .. ......+
T Consensus 14 ~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (143)
T cd04694 14 KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVV 93 (143)
T ss_pred EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEE
Confidence 8999988743 378999999999999999999999999999987653 455554322211 11 1122233
Q ss_pred EEEEe-ccc-----ccc-CCccceeeeEEEeHHHHHHHhccc
Q 030372 114 FPLLV-TEQ-----LEL-WPEKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 114 ~~~~~-~~~-----~~~-~~~~e~~~~~W~~~~el~~~~~~~ 148 (178)
|.+.. ... ... ....|+.++.|++++++..++.+.
T Consensus 94 y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 94 YILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred EEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 33322 111 011 223578888999999999988653
No 66
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.69 E-value=4e-16 Score=119.04 Aligned_cols=119 Identities=17% Similarity=0.114 Sum_probs=82.8
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC--------CCCEEeccccCCCCCCHHHHHHHHHhhhhceeecccee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG--------SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHE 94 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~--------~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~ 94 (178)
+.+|++|++..+ ..+|||++..+. +..|++|||+++.||++++||+||++||||+.+.....
T Consensus 44 ~~~v~vl~~~~~----------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~ 113 (185)
T TIGR00052 44 GNAAAVLLYDPK----------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRK 113 (185)
T ss_pred CCeEEEEEEECC----------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEE
Confidence 445666766543 238999986542 24689999999999999999999999999999876666
Q ss_pred eeEEEeeecCCCcEEEEEEEEEEecccc----ccCCccceeeeEEEeHHHHHHHhccchHHHH
Q 030372 95 LGKWNFLSKSRGTFYEGYMFPLLVTEQL----ELWPEKDVRQRIWMSVAEAREACRHGWMKEA 153 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 153 (178)
+..+... ........++|.+...... ....++|...+.|++++++.+++....+.++
T Consensus 114 ~~~~~~~--~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~ 174 (185)
T TIGR00052 114 LLSFYSS--PGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNG 174 (185)
T ss_pred EEEEEcC--CCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCH
Confidence 6654322 2222345567777654321 1223346678899999999999876655443
No 67
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.68 E-value=3.6e-15 Score=110.50 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=80.8
Q ss_pred EEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccccCC
Q 030372 47 EVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWP 126 (178)
Q Consensus 47 ~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
++||+++.. ..|.+|||++++|||+++||+||++||||+.+....+++.+..... .......+|.+...... +
T Consensus 36 ~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~--~~~~~~~vf~A~~~~~~---~ 108 (156)
T TIGR02705 36 QWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGE--STDFVKDVYFAEVSALE---S 108 (156)
T ss_pred EEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCC--CcEEEEEEEEEEEeccc---c
Confidence 799998765 4699999999999999999999999999999888888887654432 23344566777665332 2
Q ss_pred ccceeeeE-EEeHHHHHHHhccc-----hHH-HHHHHHHHHHhc
Q 030372 127 EKDVRQRI-WMSVAEAREACRHG-----WMK-EALDILVERLSS 163 (178)
Q Consensus 127 ~~e~~~~~-W~~~~el~~~~~~~-----~~~-~~l~~~~~~l~~ 163 (178)
.++..+.. +++++++.+++... .|+ +.+.+.+++++.
T Consensus 109 ~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~~ 152 (156)
T TIGR02705 109 KDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAKH 152 (156)
T ss_pred CCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHHH
Confidence 24556665 89999998887433 344 466777777644
No 68
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.68 E-value=1.4e-15 Score=117.61 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=81.8
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC-C-------CEEeccccCCCCCCHHHHHHHHHhhhhceeecccee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS-Q-------GMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHE 94 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~-~-------~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~ 94 (178)
..+|++|++..+ ..+|||++..+.+ + .|++|+|.+++||++++||+||+.||||+.+.....
T Consensus 49 ~~~V~il~~~~~----------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~ 118 (202)
T PRK10729 49 GHAAVLLPFDPV----------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP 118 (202)
T ss_pred CCeEEEEEEECC----------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE
Confidence 446777777543 2389999866653 2 389999999999999999999999999999876666
Q ss_pred eeEEEeeecCCCcEEEEEEEEEEecc----c-cccCCccceeeeEEEeHHHHHHHhccchHHH
Q 030372 95 LGKWNFLSKSRGTFYEGYMFPLLVTE----Q-LELWPEKDVRQRIWMSVAEAREACRHGWMKE 152 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 152 (178)
+..+... ........++|.+.... . .....+.|..++.|++++++..++....+.+
T Consensus 119 l~~~~~s--pg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d 179 (202)
T PRK10729 119 VLSYLAS--PGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN 179 (202)
T ss_pred EEEEEcC--CCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCc
Confidence 6544322 22222345667666421 1 1223445677889999999999987655544
No 69
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.68 E-value=1.2e-15 Score=113.55 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEec-cccCCCCCCHHHHHHHHHhhhhceeeccce-
Q 030372 20 MGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFP-KGGWELDETVKEAALRESFEEAGVMGNVEH- 93 (178)
Q Consensus 20 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lP-gG~ve~gEs~~eaa~REv~EEtGl~~~~~~- 93 (178)
+..+.++++++++.+ ++|||.+|... ||.|.+| ||+++.|| .+||+||++||||+.+....
T Consensus 24 g~~h~~v~v~v~~~~-----------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l 90 (158)
T TIGR02150 24 TPLHRAFSVFLFNEE-----------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL 90 (158)
T ss_pred CCeEEEEEEEEEcCC-----------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence 467778888887654 27999887653 4889987 89999999 49999999999999976543
Q ss_pred -eeeEEEeeecCC-CcEEEEEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccch
Q 030372 94 -ELGKWNFLSKSR-GTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGW 149 (178)
Q Consensus 94 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 149 (178)
.+..+.|..... +.....++|.+..... .....+|..++.|++++++.+++..+.
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~~-~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 91 TVLPRFSYRARDAWGEHELCPVFFARAPVP-LNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred EEcceEEEEEecCCCcEEEEEEEEEecCCc-ccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 344444433221 2233345565554432 222334888999999999999886543
No 70
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.67 E-value=1.4e-15 Score=116.46 Aligned_cols=114 Identities=21% Similarity=0.229 Sum_probs=78.2
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEeccccCCCC-CCHHHHHHHHHhhhhceeeccceeee
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFPKGGWELD-ETVKEAALRESFEEAGVMGNVEHELG 96 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lPgG~ve~g-Es~~eaa~REv~EEtGl~~~~~~~~~ 96 (178)
.+.+|++|++..+ +..+|||++|... +|.|+||||++|++ |++++||+||++||||+.......++
T Consensus 29 ~~~aavvl~l~~~---------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg 99 (190)
T PRK10707 29 QRQAAVLIPIVRR---------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIG 99 (190)
T ss_pred CCCeEEEEEEEEC---------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEE
Confidence 5667777777644 2347888885432 27899999999985 68999999999999999987777787
Q ss_pred EEEeeecCCCcEEEEEEEEEEeccccccC-CccceeeeEEEeHHHHHHHhc
Q 030372 97 KWNFLSKSRGTFYEGYMFPLLVTEQLELW-PEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~ 146 (178)
.+.......+. ....|.+......... ..+|..++.|++++++.++..
T Consensus 100 ~l~~~~~~~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 100 VLPPVDSSTGY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EeeeeeccCCc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 76543332222 2333333332222222 334778889999999988753
No 71
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1.5e-15 Score=110.06 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=72.5
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEeccccCCCCCCHHHHHHHHHhhhhceee-ccceeeeEEE
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFPKGGWELDETVKEAALRESFEEAGVMG-NVEHELGKWN 99 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~-~~~~~~~~~~ 99 (178)
++++++++.+ ++|||+++.+. ++.|.+|||+++.||++.+||.||++||||+.+ .....+....
T Consensus 2 ~~~~~i~~~~-----------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~ 70 (133)
T cd04685 2 AARVVLLDPD-----------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRD 70 (133)
T ss_pred eEEEEEEcCC-----------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEE
Confidence 4678888765 27999987653 267999999999999999999999999999997 5554443322
Q ss_pred --eeecCCCcEEEEEEEEEEeccccc---cC--Cc-cceeeeEEEeHHHHHHH
Q 030372 100 --FLSKSRGTFYEGYMFPLLVTEQLE---LW--PE-KDVRQRIWMSVAEAREA 144 (178)
Q Consensus 100 --~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-~e~~~~~W~~~~el~~~ 144 (178)
+...........++|.+....... .. .+ .+...+.|++++++...
T Consensus 71 ~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 71 AAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 222221122234566665543211 11 11 13456799999999875
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.64 E-value=1.3e-14 Score=110.13 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=83.4
Q ss_pred CCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCE-EeccccCCCCCCHHHHHHHHHhhhhceeeccc--
Q 030372 20 MGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGM-MFPKGGWELDETVKEAALRESFEEAGVMGNVE-- 92 (178)
Q Consensus 20 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W-~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~-- 92 (178)
+..+.++.+.+|..+ + ++..+|++.+|... ||.| .+|||+++.|||+.+||+||++||||+.+...
T Consensus 29 g~~h~~v~~~~~~~~---~----~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 29 GLVTYGVHLNGYVRD---E----DGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred CceEEEEEEEEEEEc---C----CCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 356666776666654 0 11357877776654 4889 59999999999999999999999999987653
Q ss_pred -eeeeEEEeeec-CCCc--EEEEEEEEEEecccc-ccCCccceeeeEEEeHHHHHHHhccchHHH
Q 030372 93 -HELGKWNFLSK-SRGT--FYEGYMFPLLVTEQL-ELWPEKDVRQRIWMSVAEAREACRHGWMKE 152 (178)
Q Consensus 93 -~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 152 (178)
..++.+.|... .... ....++|.+...... ....++|..++.|++++++.+++....+.+
T Consensus 102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~~~ 166 (180)
T cd03676 102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFKP 166 (180)
T ss_pred ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCCCc
Confidence 34444444432 2221 123455655543222 223445788899999999999987655533
No 73
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.62 E-value=6.5e-15 Score=112.01 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc----------------eeeeEEEeeecCCC
Q 030372 43 VDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE----------------HELGKWNFLSKSRG 106 (178)
Q Consensus 43 ~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~----------------~~~~~~~~~~~~~~ 106 (178)
++..+|||+++... +.|.||||++++||++.+||+||++||||+.+... ..+.+|........
T Consensus 46 ~~~l~vLl~~r~~~-g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr 124 (186)
T cd03670 46 KPILQFVAIKRPDS-GEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPR 124 (186)
T ss_pred CCeeEEEEEEeCCC-CcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCC
Confidence 45679999999877 99999999999999999999999999997642111 12223322212211
Q ss_pred c----EEEEEEEEEEecc-----ccccCCccceeeeEEEeHHHHHHHhccchHHHHHHHHHH
Q 030372 107 T----FYEGYMFPLLVTE-----QLELWPEKDVRQRIWMSVAEAREACRHGWMKEALDILVE 159 (178)
Q Consensus 107 ~----~~~~~~~~~~~~~-----~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 159 (178)
. ......|.+.... .......++..++.|+++++++.+. .+..++|+.+.+
T Consensus 125 ~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~--~dH~~Il~~a~~ 184 (186)
T cd03670 125 NTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLY--ANHSQFLKKVAE 184 (186)
T ss_pred CCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccc--cCHHHHHHHHHH
Confidence 1 1122223222211 1223344567888999999988543 445667766654
No 74
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.62 E-value=1.7e-14 Score=110.54 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=80.8
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC-------C--CEEeccccCCCCCCHHHHHHHHHhhhhceeeccce
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS-------Q--GMMFPKGGWELDETVKEAALRESFEEAGVMGNVEH 93 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~-------~--~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~ 93 (178)
+.+|+++++..+ ..+|||++..+.+ + .|++|+|.++.| ++++||+||++||||+.+....
T Consensus 45 ~~~v~Vl~~~~~----------~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~ 113 (191)
T PRK15009 45 GNGATILLYNAK----------KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR 113 (191)
T ss_pred CCEEEEEEEECC----------CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE
Confidence 456777777543 2389999866653 2 389999999976 6999999999999999987776
Q ss_pred eeeEEEeeecCCCcEEEEEEEEEEeccc--c--ccCCccceeeeEEEeHHHHHHHhccchHHHH
Q 030372 94 ELGKWNFLSKSRGTFYEGYMFPLLVTEQ--L--ELWPEKDVRQRIWMSVAEAREACRHGWMKEA 153 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 153 (178)
.++.+ |..+ +......++|.+..... . ....++|..++.|++++++.+++....+.++
T Consensus 114 ~l~~~-~~sp-G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da 175 (191)
T PRK15009 114 KLFEL-YMSP-GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDG 175 (191)
T ss_pred EeeEE-EcCC-cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcH
Confidence 66654 2222 22223456677765321 1 1123457788999999999999976655443
No 75
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.4e-15 Score=104.58 Aligned_cols=103 Identities=19% Similarity=0.062 Sum_probs=62.9
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC--CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEE
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS--QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWN 99 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~--~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~ 99 (178)
+..++++|+...+ ++||++++..+ +.|.||||+++.|||+.+||.||++||||+++..........
T Consensus 3 p~~~av~vl~~~~------------~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~ 70 (118)
T cd04674 3 PLPVVVALLPVDD------------GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDV 70 (118)
T ss_pred CcEEEEEEEEECC------------CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEE
Confidence 4455656654433 57777766543 789999999999999999999999999999976432222222
Q ss_pred eeecCCCcEEEEEEEEEEecccc--ccCCccceeeeEEEeH
Q 030372 100 FLSKSRGTFYEGYMFPLLVTEQL--ELWPEKDVRQRIWMSV 138 (178)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~ 138 (178)
+... ......+.|........ ...++.|..++.|+..
T Consensus 71 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 109 (118)
T cd04674 71 RSAP--DGTLLVFGLLPERRAADLPPFEPTDETTERAVVTA 109 (118)
T ss_pred EecC--CCeEEEEEEEeccccccCCCCCCCcceeeEEEccC
Confidence 2222 22233344444333322 2234456666566554
No 76
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.61 E-value=5.9e-15 Score=105.71 Aligned_cols=44 Identities=39% Similarity=0.413 Sum_probs=37.8
Q ss_pred CeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeec
Q 030372 45 DIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGN 90 (178)
Q Consensus 45 ~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~ 90 (178)
..+||+.+... +.|.+|||++++|||+.+||+||++||||+++.
T Consensus 13 ~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 13 VLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred eEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 45777776544 569999999999999999999999999999973
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.59 E-value=3.4e-14 Score=116.43 Aligned_cols=107 Identities=18% Similarity=0.077 Sum_probs=75.5
Q ss_pred EEEEEEeeCC---CCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKG---SQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~---~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
+|||.+|... +|.|.||||+++.||++.+|+.||++||||+.+.....+....+..++. .....+|.+......
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~--~~~i~~y~~~~~~~~- 94 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDK--RVRLDVRRVTAWQGE- 94 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCC--eEEEEEEEEEEecCc-
Confidence 8999887653 2789999999999999999999999999999977655555555544432 234456655443221
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEALDIL 157 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 157 (178)
....+..++.|++++++.++...+.++.++..+
T Consensus 95 -~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 95 -PHGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred -ccCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 223356677999999998876666555555443
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.55 E-value=5.7e-15 Score=117.42 Aligned_cols=96 Identities=21% Similarity=0.131 Sum_probs=75.7
Q ss_pred EEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccccC
Q 030372 47 EVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELW 125 (178)
Q Consensus 47 ~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
++||.++.++. |.|++-+|.|++|||+++|+.||++||+|++++-..++++..++.++. .+.-|.++.....-..
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~S----LMigf~aey~sgeI~~ 231 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHS----LMLGFMAEYDSGEITP 231 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchh----hhhhheeeeccccccC
Confidence 58898876654 889999999999999999999999999999998888888876666543 2334555555544444
Q ss_pred CccceeeeEEEeHHHHHHHhc
Q 030372 126 PEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 126 ~~~e~~~~~W~~~~el~~~~~ 146 (178)
+..|..+++||+.+++..++.
T Consensus 232 d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 232 DEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred CcchhhhccccCHhHHhhhcC
Confidence 556899999999999666554
No 79
>PLN03143 nudix hydrolase; Provisional
Probab=99.55 E-value=5.2e-13 Score=107.92 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=70.6
Q ss_pred EEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC---CCEEeccccCCC-CCCHHHHHHHHHhhhhceeeccc--eeeeE
Q 030372 24 QVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS---QGMMFPKGGWEL-DETVKEAALRESFEEAGVMGNVE--HELGK 97 (178)
Q Consensus 24 ~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~---~~W~lPgG~ve~-gEs~~eaa~REv~EEtGl~~~~~--~~~~~ 97 (178)
.+|+++++... ++..+|||+++.+.+ ..|+||||.+|+ +|++.+||+||++||||+.+... ..+..
T Consensus 129 ~aVaVL~~l~~--------~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~ 200 (291)
T PLN03143 129 PAVAVLILLES--------EGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTA 200 (291)
T ss_pred CeEEEEEEEeC--------CCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeee
Confidence 35666665433 244468999877754 358999999998 48999999999999999986432 22210
Q ss_pred -------EEeeecCCCcEEEEEEEEEEe--ccc---------cccCCccceeeeEEEeHHHHHHHhcc
Q 030372 98 -------WNFLSKSRGTFYEGYMFPLLV--TEQ---------LELWPEKDVRQRIWMSVAEAREACRH 147 (178)
Q Consensus 98 -------~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~e~~~~~W~~~~el~~~~~~ 147 (178)
+.+...........++|.+.. ... .....+.|...+.|++++++..+...
T Consensus 201 ~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD 268 (291)
T PLN03143 201 FLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD 268 (291)
T ss_pred ccccCcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence 011111111111233444332 210 01123346778899999999888753
No 80
>PLN02709 nudix hydrolase
Probab=99.52 E-value=1.7e-13 Score=106.69 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=78.5
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEeccccCCCCC-CHHHHHHHHHhhhhceeeccceee
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFPKGGWELDE-TVKEAALRESFEEAGVMGNVEHEL 95 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lPgG~ve~gE-s~~eaa~REv~EEtGl~~~~~~~~ 95 (178)
..|.++..|++..... ..++..+|||++|... +|.|+||||++|++| ++.+||+||+.||+|+.......+
T Consensus 30 ~~r~AAVLv~l~~~~~----~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vl 105 (222)
T PLN02709 30 PAKSSAVLVCLYQEQR----EDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTII 105 (222)
T ss_pred CCCccEEEEEEeeccC----CCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEe
Confidence 3466666666654200 0024568999988764 389999999999975 789999999999999987666666
Q ss_pred eEEEeeecCCCcEEEEEEEEEEecc--ccccC-CccceeeeEEEeHHHHHHH
Q 030372 96 GKWNFLSKSRGTFYEGYMFPLLVTE--QLELW-PEKDVRQRIWMSVAEAREA 144 (178)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~e~~~~~W~~~~el~~~ 144 (178)
+......... .+.+..|.+.... ..... ..+|..++.|++++.+.+.
T Consensus 106 g~L~~~~t~s--g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 106 SVLEPFVNKK--GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred eecCCeECCC--CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 6654333222 2334555555432 22222 3348888999999988653
No 81
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.44 E-value=2.4e-14 Score=114.56 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=66.5
Q ss_pred EEEEEEeeCCC-CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEec-ccccc
Q 030372 47 EVLVITSQKGS-QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVT-EQLEL 124 (178)
Q Consensus 47 ~vLLv~~~~~~-~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 124 (178)
+.||.+.++.+ |.|..++|.+|+|||++|||+||++||||+++....+.....++- .....++.++..... .....
T Consensus 201 ~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~--~p~SLMIgc~ala~~~~~I~v 278 (345)
T KOG3084|consen 201 HALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPL--MPQSLMIGCLALAKLNGKISV 278 (345)
T ss_pred EeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCC--CchHHHHHHHHHHhhCCcccc
Confidence 67777655554 889999999999999999999999999999987665554433331 011111112221112 22233
Q ss_pred CCccceeeeEEEeHHHHHHHhc
Q 030372 125 WPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 125 ~~~~e~~~~~W~~~~el~~~~~ 146 (178)
.++.|..+++||+.+++.+.+.
T Consensus 279 d~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 279 DKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred CcchhhhhcccccHHHHHHHHH
Confidence 3444889999999999988775
No 82
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.43 E-value=8e-12 Score=99.07 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=77.9
Q ss_pred CCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEec-----cccCCCCC-------------CHHHHH
Q 030372 20 MGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFP-----KGGWELDE-------------TVKEAA 77 (178)
Q Consensus 20 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lP-----gG~ve~gE-------------s~~eaa 77 (178)
+..+.++.+++|+.+ + ++||.+|... |+.|... +++.++|| +..+||
T Consensus 53 gl~Hra~~v~i~n~~---------g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA 121 (247)
T PLN02552 53 GLLHRAFSVFLFNSK---------Y--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA 121 (247)
T ss_pred CceEEEEEEEEEcCC---------C--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence 467788888888765 2 7887777654 3689544 44444332 168999
Q ss_pred HHHHhhhhceeecc-----ceeeeEEEeeecCC------C----cEEEEEEEEEEeccccccCCccceeeeEEEeHHHHH
Q 030372 78 LRESFEEAGVMGNV-----EHELGKWNFLSKSR------G----TFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAR 142 (178)
Q Consensus 78 ~REv~EEtGl~~~~-----~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 142 (178)
+||++||||+.+.. +.+++.+.|..... . .....++|.............+|..++.|++++++.
T Consensus 122 ~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~ 201 (247)
T PLN02552 122 QRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELK 201 (247)
T ss_pred HhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHH
Confidence 99999999998543 34555555554322 1 112222232112222222344578899999999999
Q ss_pred HHhc-------cchHHHHHHHHH
Q 030372 143 EACR-------HGWMKEALDILV 158 (178)
Q Consensus 143 ~~~~-------~~~~~~~l~~~~ 158 (178)
.++. .++++.++..++
T Consensus 202 ~~~~~~~~~~~tpw~~~~~~~~l 224 (247)
T PLN02552 202 EMMRKESGLKLSPWFRLIVDNFL 224 (247)
T ss_pred HHHhhcCCcccCHHHHHHHHHHH
Confidence 9863 455555555544
No 83
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.43 E-value=3.1e-12 Score=91.63 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=65.9
Q ss_pred eEEEEEEeeCCCC-CEEeccccCCCCCCHHH-HHHHHHhhhhceeec--cceeeeEEEeeecCCC---cEEEEEEEEEEe
Q 030372 46 IEVLVITSQKGSQ-GMMFPKGGWELDETVKE-AALRESFEEAGVMGN--VEHELGKWNFLSKSRG---TFYEGYMFPLLV 118 (178)
Q Consensus 46 ~~vLLv~~~~~~~-~W~lPgG~ve~gEs~~e-aa~REv~EEtGl~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 118 (178)
.+||+.+++.. + .|.+|||+++.||++.+ ||+||++||||+.+. ....++.+........ .......+....
T Consensus 24 ~~vl~~~~~~~-~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (161)
T COG0494 24 GEVLLAQRRDD-GGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEV 102 (161)
T ss_pred CEEeEEEcccc-CCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEeeec
Confidence 47888888887 5 99999999999998888 999999999999987 3444444433322211 112222222221
Q ss_pred cc--cccc-CC---ccceeeeEEEeHHHHHHHhccc
Q 030372 119 TE--QLEL-WP---EKDVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 119 ~~--~~~~-~~---~~e~~~~~W~~~~el~~~~~~~ 148 (178)
.. .... .. ..+.....|++++++.......
T Consensus 103 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 103 DDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred cccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 11 1111 11 2467888999999998776543
No 84
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.32 E-value=3.5e-11 Score=84.67 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=83.0
Q ss_pred ceEEEEEEEEEeecCCCCCCcCCCeEEEEEEee-------CCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccc-e
Q 030372 22 RRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQ-------KGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVE-H 93 (178)
Q Consensus 22 ~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~-------~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~-~ 93 (178)
+..++|+++|+.. .+...|||++.- +. |.|++|+|....||.+..||.||..||+|+.+.-. .
T Consensus 2 pK~SAGvLlYR~~--------aG~v~VLLvHPGGPFWa~kD~-GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~ 72 (161)
T COG4119 2 PKLSAGVLLYRAR--------AGVVDVLLVHPGGPFWAGKDD-GAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI 72 (161)
T ss_pred CcccceeEEEEec--------CCCEEEEEecCCCCccccCCC-CcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence 3567999999988 677889998732 33 88999999999999999999999999999987321 2
Q ss_pred eeeE-----------EEeeecCCCcEEEEEEEEEEecccccc-CCccceeeeEEEeHHHHHHHhccchHHHHHHHHHHH
Q 030372 94 ELGK-----------WNFLSKSRGTFYEGYMFPLLVTEQLEL-WPEKDVRQRIWMSVAEAREACRHGWMKEALDILVER 160 (178)
Q Consensus 94 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 160 (178)
.++. |.....-.-.......|.++.+..... ..-.|...+.||++.++...+. ..++.+|..+...
T Consensus 73 ~lG~~kQ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil-~gQRpfldrL~a~ 150 (161)
T COG4119 73 DLGSLKQSGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKIL-KGQRPFLDRLMAH 150 (161)
T ss_pred hhhhhccCCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHh-hccchHHHHHHHH
Confidence 2221 111110000001123455554433222 2223566679999999977664 3456666665544
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.27 E-value=1.4e-10 Score=104.18 Aligned_cols=117 Identities=17% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEe-ccccCCCCCCHHHHHHHHHhhhhceeecc--c
Q 030372 20 MGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMF-PKGGWELDETVKEAALRESFEEAGVMGNV--E 92 (178)
Q Consensus 20 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~l-PgG~ve~gEs~~eaa~REv~EEtGl~~~~--~ 92 (178)
+..+.++.+.+|+.. ..+|||.+|... ||.|.+ +||+++.||+..+||+||+.||+|+.+.. .
T Consensus 29 Gl~HrAvhVwIfn~~----------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l 98 (770)
T PLN02791 29 GDYHRAVHVWIYSES----------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF 98 (770)
T ss_pred CCceEEEEEEEEECC----------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe
Confidence 467777888888753 127777776653 488998 79999999999999999999999998543 3
Q ss_pred eeeeEEEeeec-CCC---cEEEEEEEEEEecccc----ccCCccceeeeEEEeHHHHHHHhc
Q 030372 93 HELGKWNFLSK-SRG---TFYEGYMFPLLVTEQL----ELWPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 93 ~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~~ 146 (178)
.+++.+.+... ... ......+|.+...... -..+.+|..++.|++++++..++.
T Consensus 99 ~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 99 ELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred eeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence 44554433211 111 1122234443321111 122345889999999999998774
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.18 E-value=6.3e-10 Score=83.94 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=71.4
Q ss_pred EEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC-CC--EEeccccCCCCCCHHHHHHHHHhhhhceeeccc--eeeeEEE
Q 030372 25 VVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS-QG--MMFPKGGWELDETVKEAALRESFEEAGVMGNVE--HELGKWN 99 (178)
Q Consensus 25 ~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~-~~--W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~--~~~~~~~ 99 (178)
.|+++++-.. ++...|+|++.-+.| |+ -+||+|-+|.||+.+.||+||++||||+..++. .+..
T Consensus 75 gVaIl~il~~--------dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~--- 143 (225)
T KOG3041|consen 75 GVAILAILES--------DGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTV--- 143 (225)
T ss_pred eEEEEEEEec--------CCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccE---
Confidence 3555655554 567799999888777 65 579999999999999999999999999996554 2222
Q ss_pred eeecCC--CcEEEE-EEEEEEecccc---ccCCccceeeeEEEeHHHHHHHhc
Q 030372 100 FLSKSR--GTFYEG-YMFPLLVTEQL---ELWPEKDVRQRIWMSVAEAREACR 146 (178)
Q Consensus 100 ~~~~~~--~~~~~~-~~~~~~~~~~~---~~~~~~e~~~~~W~~~~el~~~~~ 146 (178)
|..+.. ...+.+ ..+-+..+... ....+.|..++.-++..++.+.+.
T Consensus 144 f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~ 196 (225)
T KOG3041|consen 144 FLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELA 196 (225)
T ss_pred EcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHH
Confidence 121211 112222 11222222111 122334788889999999977653
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.02 E-value=2.4e-09 Score=82.94 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=72.8
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEEeccccCCCCC-CHHHHHHHHHhhhhceeeccceee
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMMFPKGGWELDE-TVKEAALRESFEEAGVMGNVEHEL 95 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~lPgG~ve~gE-s~~eaa~REv~EEtGl~~~~~~~~ 95 (178)
..|.++.+|++... | +++..|||.+|..+ +|...||||+.+..+ |-..||.||+.||.|+..+....+
T Consensus 40 ~~~~~aVlI~L~~~---~----~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~ 112 (246)
T KOG3069|consen 40 PNRKAAVLIPLVQV---G----SGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVL 112 (246)
T ss_pred CCCCccEEEEEEEc---C----CCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhh
Confidence 45677777777654 2 35678888876654 377899999999865 778899999999999986554444
Q ss_pred eEEEeeec-CCCcEEEEEEEEEEecc-ccccCCccceeeeEEEeHHHHHHHh
Q 030372 96 GKWNFLSK-SRGTFYEGYMFPLLVTE-QLELWPEKDVRQRIWMSVAEAREAC 145 (178)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~ 145 (178)
+...-... ..-...-...|.....- ........|..++.|+|++++..-.
T Consensus 113 g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~ 164 (246)
T KOG3069|consen 113 GALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPK 164 (246)
T ss_pred hhccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhhhh
Confidence 43321111 11111111222222211 1122344578888999999986543
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.01 E-value=1.3e-08 Score=71.11 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=65.0
Q ss_pred EEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
++||.+|.... |.|+||+|.++.+++.+++..|++.+|.++ ....++.+.+..++. .....+|.+......
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~--~~~~~~~~~~~~~~~- 88 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHF--RLTLHVYLARLEGDL- 88 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCe--EEEEEEEEEEEeCCC-
Confidence 78888876542 789999999999999999999999888764 112233334443332 233455655543321
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEALD 155 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 155 (178)
.+..+..|++++++........++.+++
T Consensus 89 ----~~~~~~~W~~~eel~~~~~p~~~~kil~ 116 (118)
T cd03431 89 ----LAPDEGRWVPLEELDEYALPTVMRKILE 116 (118)
T ss_pred ----cCccccEEccHHHHhhCCCCHHHHHHHH
Confidence 2344679999999998765555555543
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=2.4e-09 Score=85.92 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=72.1
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCC----CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeee
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGS----QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELG 96 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~----~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~ 96 (178)
..+..+|+.+++.+ .+||+++.+... +.|-+|+|.++++|++.++|+||++||||+.......+.
T Consensus 113 sh~vgvg~~V~n~~-----------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla 181 (295)
T KOG0648|consen 113 SHRVGVGAFVLNKK-----------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLA 181 (295)
T ss_pred hhheeeeeeEecCC-----------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHH
Confidence 56666777776543 489999864432 789999999999999999999999999999654332222
Q ss_pred EEEeeecCCCc---EEEEEEEEEEecc--ccccCCccceeeeEEEeHHHHHHHh
Q 030372 97 KWNFLSKSRGT---FYEGYMFPLLVTE--QLELWPEKDVRQRIWMSVAEAREAC 145 (178)
Q Consensus 97 ~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~ 145 (178)
. ...+... .....+|.+.... .....+..++...+|+++++.....
T Consensus 182 ~---r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 182 F---RRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred H---HhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence 1 1111111 1222344444432 2223344567677999999887765
No 90
>PLN02839 nudix hydrolase
Probab=98.73 E-value=4.8e-07 Score=75.03 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=80.6
Q ss_pred CCeEEEEEEeeCC----CCCEE-eccccCCCCCCHHHHHHHHHhhhhceeec---cceeeeEEEeeecCCCc--EEEEEE
Q 030372 44 DDIEVLVITSQKG----SQGMM-FPKGGWELDETVKEAALRESFEEAGVMGN---VEHELGKWNFLSKSRGT--FYEGYM 113 (178)
Q Consensus 44 ~~~~vLLv~~~~~----~~~W~-lPgG~ve~gEs~~eaa~REv~EEtGl~~~---~~~~~~~~~~~~~~~~~--~~~~~~ 113 (178)
+..++-+-+|... ||+|. +.+|++..||++.+|++||+.||.|+... .....+.+.|....... ....++
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~ 295 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC 295 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence 4445444444432 37785 78999999999999999999999999844 23566777666443322 223345
Q ss_pred EEEEecccc-ccCCccceeeeEEEeHHHHHHHhccc-hHHH--HHHHHHHHHhccccc
Q 030372 114 FPLLVTEQL-ELWPEKDVRQRIWMSVAEAREACRHG-WMKE--ALDILVERLSSRVQQ 167 (178)
Q Consensus 114 ~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~-~~~~--~l~~~~~~l~~~~~~ 167 (178)
|-++.+... +...+.|..+..+++++++.+.+... .+|. ++-.+.-.++++.+.
T Consensus 296 YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRhG~It 353 (372)
T PLN02839 296 YDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRHGFIR 353 (372)
T ss_pred eeeecCCccccCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCC
Confidence 666655433 33455578888999999999888643 3543 333333445666654
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.50 E-value=4.1e-07 Score=67.66 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=77.2
Q ss_pred eEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCC----CCCEE-eccccCCCCCCHHHHHHHHHhhhhceeecc---cee
Q 030372 23 RQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKG----SQGMM-FPKGGWELDETVKEAALRESFEEAGVMGNV---EHE 94 (178)
Q Consensus 23 r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~----~~~W~-lPgG~ve~gEs~~eaa~REv~EEtGl~~~~---~~~ 94 (178)
+.+..+.+|+.+ | ++||.+|... |+.|. -.-||--+|||...||+|-+.+|.|+++.. ..+
T Consensus 33 HrAFS~~lFne~---g--------~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~i 101 (185)
T COG1443 33 HRAFSSFLFNER---G--------QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEI 101 (185)
T ss_pred HhhhheeEECCC---C--------ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccc
Confidence 566788999877 2 5655554433 24454 345777799999999999999999999763 356
Q ss_pred eeEEEeeecCCCcEEE---EEEEEEEeccccccCCccceeeeEEEeHHHHHHHhccchH
Q 030372 95 LGKWNFLSKSRGTFYE---GYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREACRHGWM 150 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 150 (178)
+..|.|.....+.... -++|.+........ ..+|..+.+|++++++.++......
T Consensus 102 l~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~-npdEV~~~~wv~~e~l~~~~~~~~~ 159 (185)
T COG1443 102 LPRFRYRAADPDGIVENEICPVLAARLDSALDP-NPDEVMDYRWVSPEDLKEMVDATPW 159 (185)
T ss_pred ccceEEeccCCCCcceeeeeeEEEEeecCCCCC-ChHHhhheeccCHHHHHHhhcCCce
Confidence 6667777665444221 13344444332222 2347889999999999999865433
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.10 E-value=1.8e-05 Score=55.31 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=56.3
Q ss_pred EEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
++||.+|.... |.|+||.--.+. ++..+.+.+.+.+..|+.+.....++.+.+..++. ..+..+|.+.+.....
T Consensus 10 ~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~--~~~~~~~~~~~~~~~~ 86 (114)
T PF14815_consen 10 RVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHR--RWTIHVYEVEVSADPP 86 (114)
T ss_dssp EEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSE--EEEEEEEEEEEE-SS-
T ss_pred EEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccce--EEEEEEEEEEecCCCC
Confidence 88888877753 779999977763 33466666777788998877666777777776653 3455667776654332
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEA 153 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 153 (178)
. ...+..|++.+++.+......++.+
T Consensus 87 ~----~~~~~~W~~~~~l~~~~~p~~~~ki 112 (114)
T PF14815_consen 87 A----EPEEGQWVSLEELDQYPLPTPMRKI 112 (114)
T ss_dssp -------TTEEEEEGGGGGGS---HHHHHH
T ss_pred C----CCCCcEEEEHHHHhhCCCCHHHHHH
Confidence 2 3557799999999876655444433
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.96 E-value=8.8e-06 Score=62.77 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=36.1
Q ss_pred eEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhh
Q 030372 46 IEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEA 85 (178)
Q Consensus 46 ~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEt 85 (178)
.+++.|++... +.|.+|||.+++||-+-.+.+||+.||.
T Consensus 139 le~vavkr~d~-~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDN-GEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCC-CcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 67778888888 9999999999999999999999999995
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.70 E-value=9e-06 Score=66.12 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=68.6
Q ss_pred CceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEe
Q 030372 21 GRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNF 100 (178)
Q Consensus 21 ~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~ 100 (178)
..-.+-|++++... --++||++.-.. ..|.+|.|++..+|+-..||+||+.||||...... +....+
T Consensus 80 ~~iPv~ga~ild~~----------~sr~llv~g~qa-~sw~fprgK~~kdesd~~caiReV~eetgfD~skq--l~~~e~ 146 (348)
T KOG2937|consen 80 ARIPVRGAIILDEK----------RSRCLLVKGWQA-SSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQ--LQDNEG 146 (348)
T ss_pred CCCCCchHhhhhhh----------hhhhheeeceec-ccccccCccccccchhhhcchhcccchhhcCHHHH--hccccC
Confidence 34455678887765 237888876666 66999999999999999999999999999986432 111111
Q ss_pred eecCCCcEEEEEEEEEE---eccccccCCccceeeeEEEeHHHHH
Q 030372 101 LSKSRGTFYEGYMFPLL---VTEQLELWPEKDVRQRIWMSVAEAR 142 (178)
Q Consensus 101 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~~~W~~~~el~ 142 (178)
....-.. ....+|... ...........|+..+.|+.++++.
T Consensus 147 Ie~nI~d-q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 147 IETNIRD-QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV 190 (348)
T ss_pred cccchhh-ceeeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence 1111100 112223221 1112223344578888999999993
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.61 E-value=0.00041 Score=52.73 Aligned_cols=69 Identities=23% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhceee------ccce
Q 030372 20 MGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAGVMG------NVEH 93 (178)
Q Consensus 20 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~------~~~~ 93 (178)
+..|.+.|++++... +-.+|||+|... ..|.||||.+.+||+..++..|.+.+-.|... .+.+
T Consensus 41 GmRrsVe~Vllvh~h---------~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge 109 (188)
T PF13869_consen 41 GMRRSVEGVLLVHEH---------GHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGE 109 (188)
T ss_dssp SSEEEEEEEEEEEET---------TEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEE
T ss_pred CCceEEEEEEEEecC---------CCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecC
Confidence 455666666666554 667899999544 58999999999999999999999999988863 2346
Q ss_pred eeeEEE
Q 030372 94 ELGKWN 99 (178)
Q Consensus 94 ~~~~~~ 99 (178)
.++.|.
T Consensus 110 ~l~~Ww 115 (188)
T PF13869_consen 110 CLGTWW 115 (188)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777754
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.26 E-value=0.0073 Score=44.75 Aligned_cols=99 Identities=23% Similarity=0.148 Sum_probs=61.4
Q ss_pred EEEEEEeeCCC------CCEEec-cccCCCCC--CHHHH-----HHHHHhhhhceeeccc---eeeeEEEeeecCCCcEE
Q 030372 47 EVLVITSQKGS------QGMMFP-KGGWELDE--TVKEA-----ALRESFEEAGVMGNVE---HELGKWNFLSKSRGTFY 109 (178)
Q Consensus 47 ~vLLv~~~~~~------~~W~lP-gG~ve~gE--s~~ea-----a~REv~EEtGl~~~~~---~~~~~~~~~~~~~~~~~ 109 (178)
+||+-.|-... +.+++- |||+..++ ++.+. +-||+.||.++.-... .+++.+......-+..+
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 78777655431 345554 89999754 44333 5599999999984443 56665433322222345
Q ss_pred EEEEEEEEeccccccCCccceeeeEEEeHHHHHHHh
Q 030372 110 EGYMFPLLVTEQLELWPEKDVRQRIWMSVAEAREAC 145 (178)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 145 (178)
...+|........-...+.+...+.|+..+++....
T Consensus 153 iG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~y 188 (203)
T COG4112 153 IGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKFY 188 (203)
T ss_pred EEEEEEeeccccceeeeecceeeeeeeeHHHHHHHh
Confidence 556777665442223345567888999999998843
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.88 E-value=0.0024 Score=47.58 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=46.8
Q ss_pred CCceEEEEEEEEEeecCCCCCCcCCCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHHHhhhhc
Q 030372 20 MGRRQVVGCVPYRYKTGDGAGNVVDDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRESFEEAG 86 (178)
Q Consensus 20 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~REv~EEtG 86 (178)
+..|.+-|++++... +..+|||+|-.. ..+-+|||.+++||+-.+...|-+-|-.|
T Consensus 67 gmRrsvegvlivheH---------~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 67 GMRRSVEGVLIVHEH---------NLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hhhheeeeeEEEeec---------CCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 456777777777766 456899998665 47899999999999999999999999999
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.83 E-value=0.0046 Score=50.08 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred EeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccccCCccceeeeEEEeHH
Q 030372 61 MFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLELWPEKDVRQRIWMSVA 139 (178)
Q Consensus 61 ~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~ 139 (178)
++-||-++..-|+.+-|..|+.||+|+++....+++.+.|....+.......+|++++....+.........-+..+++
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~es~kis~gggv~~~~~~~~~ 160 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDESMKISEGGGVITKVYYPVN 160 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecchhhccccCCceeeEEEEeeh
Confidence 5679999999999999999999999999988888888888765444334456788887665544444444444444443
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.019 Score=43.97 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=49.3
Q ss_pred CHHHHHHHHHhhhhceeeccc-----eeeeEEEeeecCCCcE-EEEEEEEEEeccccccCCc-cceeeeEEEeHHHHHHH
Q 030372 72 TVKEAALRESFEEAGVMGNVE-----HELGKWNFLSKSRGTF-YEGYMFPLLVTEQLELWPE-KDVRQRIWMSVAEAREA 144 (178)
Q Consensus 72 s~~eaa~REv~EEtGl~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~ 144 (178)
-...||.|-+.-|.|+..... .++..+.|.....+.. -+-.-|.+-........|+ .|..+++|++.+++..+
T Consensus 104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelkel 183 (225)
T KOG0142|consen 104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKEL 183 (225)
T ss_pred HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHHH
Confidence 568999999999999985432 5777777776654321 1112232222222333333 37888999999999998
Q ss_pred hcc
Q 030372 145 CRH 147 (178)
Q Consensus 145 ~~~ 147 (178)
+..
T Consensus 184 ~~~ 186 (225)
T KOG0142|consen 184 VAK 186 (225)
T ss_pred Hhc
Confidence 853
No 100
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.025 Score=44.75 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=62.7
Q ss_pred EEEEEEeeCCC-CCEEeccccC-CCCCCHHHHHHHHHhhhhceeeccc----eeeeEEEeeecCCCc--E---EEEEEEE
Q 030372 47 EVLVITSQKGS-QGMMFPKGGW-ELDETVKEAALRESFEEAGVMGNVE----HELGKWNFLSKSRGT--F---YEGYMFP 115 (178)
Q Consensus 47 ~vLLv~~~~~~-~~W~lPgG~v-e~gEs~~eaa~REv~EEtGl~~~~~----~~~~~~~~~~~~~~~--~---~~~~~~~ 115 (178)
-+||++++-+. +.|.||-+.. +.++++..+|.|+++.-.|=..... .+++.+.+.++.... . ..+++|.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k 219 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK 219 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence 47888855232 7899999999 8999999999999999888664332 445533333332221 1 2344444
Q ss_pred EEeccccccCCccceeeeEEEeHHHHHHHhcc
Q 030372 116 LLVTEQLELWPEKDVRQRIWMSVAEAREACRH 147 (178)
Q Consensus 116 ~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 147 (178)
+..-... ........+..|++-+++-+.+..
T Consensus 220 ~~lv~~~-~~kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 220 ASLVANS-NQKNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred eeecccc-chhcccccceEEechHHHhhhcch
Confidence 4332211 112223445899999999888754
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.25 E-value=0.014 Score=47.38 Aligned_cols=89 Identities=21% Similarity=0.130 Sum_probs=60.8
Q ss_pred EEeccccCCCCCCHHHHHHHHHhhhhceeeccc--eeeeEEEeeecCCCcEEEEEEEEEEeccc------cccCCcccee
Q 030372 60 MMFPKGGWELDETVKEAALRESFEEAGVMGNVE--HELGKWNFLSKSRGTFYEGYMFPLLVTEQ------LELWPEKDVR 131 (178)
Q Consensus 60 W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~e~~ 131 (178)
.+|-.|.++..-|..+-|.||..||+|+..-.. ..... |....+.......+|++++.+. .....++|..
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~--y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~I 363 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAK--YISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDI 363 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhhe--eecccCCcCCeeEEEEEEeehhhccCCCCCccccccee
Confidence 567789999989999999999999999996443 22222 2222222222445666666432 2344556888
Q ss_pred eeEEEeHHHHHHHhccchH
Q 030372 132 QRIWMSVAEAREACRHGWM 150 (178)
Q Consensus 132 ~~~W~~~~el~~~~~~~~~ 150 (178)
++.-+++++++.+...+++
T Consensus 364 Evv~lsle~a~~~~~q~~I 382 (405)
T KOG4432|consen 364 EVVRLSLEDAPSLYRQHNI 382 (405)
T ss_pred eEEEechhhhhHHHhccCC
Confidence 9999999999999865544
No 102
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.04 Score=43.66 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCeEEEEEEeeCCC----CCEE-eccccCCCCCCHHHHHHHHHhhhhceeeccc---eeeeEEEeee-cCCC--cEEEEE
Q 030372 44 DDIEVLVITSQKGS----QGMM-FPKGGWELDETVKEAALRESFEEAGVMGNVE---HELGKWNFLS-KSRG--TFYEGY 112 (178)
Q Consensus 44 ~~~~vLLv~~~~~~----~~W~-lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~---~~~~~~~~~~-~~~~--~~~~~~ 112 (178)
+..+|-+-+|.+.. ++|. +.+|++.-|-+..++|+.|..||+++..... ...++.+|.+ .+.. ..-..|
T Consensus 146 ~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qY 225 (306)
T KOG4313|consen 146 GPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQY 225 (306)
T ss_pred CceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceE
Confidence 44555555555543 4453 7799999999999999999999999986322 3444444442 2111 123456
Q ss_pred EEEEEeccccccCCcc-ceeeeEEEeHHHHHHHhccc
Q 030372 113 MFPLLVTEQLELWPEK-DVRQRIWMSVAEAREACRHG 148 (178)
Q Consensus 113 ~~~~~~~~~~~~~~~~-e~~~~~W~~~~el~~~~~~~ 148 (178)
+|-+..+...-..+.+ |.....-+++.+..+.+...
T Consensus 226 VfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l~~k 262 (306)
T KOG4313|consen 226 VFDLELPLDFIPQNNDGEVQAFELLTLKDCVERLFTK 262 (306)
T ss_pred EEeccCchhhcCCCCCCceeeEeeecHHHHHHHHHhh
Confidence 7777665544333443 56666888998887766433
No 103
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.97 E-value=0.34 Score=40.65 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=46.8
Q ss_pred EEEEEEeeCCC---CCEEeccccCCCCCCHHHHHHHHHhhhhceeeccceeeeEEEeeecCCCcEEEEEEEEEEeccccc
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWELDETVKEAALRESFEEAGVMGNVEHELGKWNFLSKSRGTFYEGYMFPLLVTEQLE 123 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
++||.++.... |.|+||.. +. . + ..++..|+.|+.......++.+.+.+++. ..+..+|.+.......
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~H~fTH~--~~~~~~~~~~~~~~~~ 313 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--AD---E-E-ELRQWLAQRGIAADNLTQLTAFRHTFSHF--HLDIVPMWLPVSSFTG 313 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cc---h-h-hHHHHHHhcCCchhhhcccCceEEEEeeE--EEEEEEEEEEcccccc
Confidence 78777776553 77999963 21 1 1 24556677787532212233333333221 1122234333221111
Q ss_pred cCCccceeeeEEEeHHHHHHHhccchHHHHH
Q 030372 124 LWPEKDVRQRIWMSVAEAREACRHGWMKEAL 154 (178)
Q Consensus 124 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 154 (178)
... ..+..|++++++.+.....-++.++
T Consensus 314 ~~~---~~~~~w~~~~~~~~~~~p~~~~k~l 341 (350)
T PRK10880 314 CMD---EGNGLWYNLAQPPSVGLAAPVERLL 341 (350)
T ss_pred ccC---CcCCeEechHHhcccCCcHHHHHHH
Confidence 011 1233699999999876654444444
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=84.38 E-value=21 Score=29.20 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=17.5
Q ss_pred eeEEEeHHHHHHHhccchHHHHHHH
Q 030372 132 QRIWMSVAEAREACRHGWMKEALDI 156 (178)
Q Consensus 132 ~~~W~~~~el~~~~~~~~~~~~l~~ 156 (178)
...|++++++.......-++.+++.
T Consensus 256 ~~~w~~~~~~~~~~~p~~~~k~~~~ 280 (289)
T PRK13910 256 PIRFYSLKDLETLPISSMTLKILNF 280 (289)
T ss_pred cceEecHHHhhhcCCcHHHHHHHHH
Confidence 3489999999987666555555543
No 105
>PF14443 DBC1: DBC1
Probab=78.39 E-value=5.7 Score=28.37 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=29.8
Q ss_pred CeEEEEEEeeCCC----CCEEec--cccCCC-CCCHHHHHHHHHhhhhceeec
Q 030372 45 DIEVLVITSQKGS----QGMMFP--KGGWEL-DETVKEAALRESFEEAGVMGN 90 (178)
Q Consensus 45 ~~~vLLv~~~~~~----~~W~lP--gG~ve~-gEs~~eaa~REv~EEtGl~~~ 90 (178)
..++|+.++.+.- |.|+.- ||.-.. ...+..+|+|=+++-||+..+
T Consensus 7 ~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 7 LLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred heeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 3466665544321 557533 544444 247899999999999999854
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=67.59 E-value=5 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=11.8
Q ss_pred eccccCCCCCCHHHHHHHHHhhhh
Q 030372 62 FPKGGWELDETVKEAALRESFEEA 85 (178)
Q Consensus 62 lPgG~ve~gEs~~eaa~REv~EEt 85 (178)
.-||-..+|--+...++||+.||.
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 347777778888889999999995
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=63.38 E-value=16 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=15.2
Q ss_pred CCEEeccccCCCCCCHHHHHHHHHhh
Q 030372 58 QGMMFPKGGWELDETVKEAALRESFE 83 (178)
Q Consensus 58 ~~W~lPgG~ve~gEs~~eaa~REv~E 83 (178)
.+|.+|||.+-.+- -.|.|...|
T Consensus 22 ~GWl~Pgg~vi~NP---lkAqR~AE~ 44 (60)
T PF07026_consen 22 NGWLMPGGKVITNP---LKAQRLAEE 44 (60)
T ss_pred ceeecCCCeeEcCH---HHHHHHHHH
Confidence 67999999987753 234454433
No 108
>PHA02754 hypothetical protein; Provisional
Probab=53.66 E-value=18 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.122 Sum_probs=26.3
Q ss_pred eHHHHHHHhccchHHHHHHHHHHHHhcccc
Q 030372 137 SVAEAREACRHGWMKEALDILVERLSSRVQ 166 (178)
Q Consensus 137 ~~~el~~~~~~~~~~~~l~~~~~~l~~~~~ 166 (178)
..++++..+....++++.+++.+.|+.+.+
T Consensus 3 kAeEi~k~i~eK~Fke~MRelkD~LSe~Gi 32 (67)
T PHA02754 3 KAEEIPKAIMEKDFKEAMRELKDILSEAGI 32 (67)
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHhhCce
Confidence 467899999999999999999999987764
No 109
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=39.54 E-value=8.7 Score=31.93 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=30.2
Q ss_pred CCEEeccccCCCCCCHHHHHHHHHhhhhceee
Q 030372 58 QGMMFPKGGWELDETVKEAALRESFEEAGVMG 89 (178)
Q Consensus 58 ~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~ 89 (178)
.-|.||.|++..||-+..+++|+..||+|+..
T Consensus 264 e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 264 ENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred ccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 67999999999999999999999999999884
No 110
>PF13014 KH_3: KH domain
Probab=35.10 E-value=27 Score=19.40 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.0
Q ss_pred HHHHHhhhhceeeccce
Q 030372 77 ALRESFEEAGVMGNVEH 93 (178)
Q Consensus 77 a~REv~EEtGl~~~~~~ 93 (178)
-++++.+|||+.+.+..
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 47999999999987644
No 111
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.23 E-value=62 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=16.4
Q ss_pred EEEEEEeeCCC---CCEEeccccCCC
Q 030372 47 EVLVITSQKGS---QGMMFPKGGWEL 69 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG~ve~ 69 (178)
+++|.++.... |.|.||......
T Consensus 248 ~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 248 EVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred chhhhhCcccCceecccccccccccc
Confidence 78787776653 679999875544
No 112
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=33.23 E-value=2.7e+02 Score=22.67 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCeEEEEEEeeCCCCCEEeccccCCCCCCHHHHHHHH-HhhhhceeeccceeeeEEE
Q 030372 44 DDIEVLVITSQKGSQGMMFPKGGWELDETVKEAALRE-SFEEAGVMGNVEHELGKWN 99 (178)
Q Consensus 44 ~~~~vLLv~~~~~~~~W~lPgG~ve~gEs~~eaa~RE-v~EEtGl~~~~~~~~~~~~ 99 (178)
++.+||-+.. .-.+|-|-.++.-...++-+|. +.+.|+...-..+++.+|.
T Consensus 35 ~~p~VLtV~q-----~~aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~ 86 (322)
T COG4111 35 GGPRVLTVRQ-----GAALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFA 86 (322)
T ss_pred CCceEEEecc-----cccCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhc
Confidence 4568877752 2349999999977666666665 4455777755556666553
No 113
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=27.79 E-value=1.9e+02 Score=23.36 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=14.2
Q ss_pred EEEEEEeeCCC---CCEEeccc
Q 030372 47 EVLVITSQKGS---QGMMFPKG 65 (178)
Q Consensus 47 ~vLLv~~~~~~---~~W~lPgG 65 (178)
++||.++.... |.|+||+-
T Consensus 240 ~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 240 EVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred eEEEEeCCCCchhhccccCCCC
Confidence 78888876542 77999973
No 114
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=26.86 E-value=28 Score=28.60 Aligned_cols=32 Identities=19% Similarity=-0.031 Sum_probs=29.1
Q ss_pred CCEEeccccCCCCCCHHHHHHHHHhhhhceeec
Q 030372 58 QGMMFPKGGWELDETVKEAALRESFEEAGVMGN 90 (178)
Q Consensus 58 ~~W~lPgG~ve~gEs~~eaa~REv~EEtGl~~~ 90 (178)
..|.+ .|+...++++.+++.|++.+++|....
T Consensus 55 ~~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~ 86 (295)
T KOG0648|consen 55 QKWYL-QGRKGIWLKLPEELARLVEEAAKYGFD 86 (295)
T ss_pred HHHHH-ccCcccceechHHHHhHHHHHHhcCcE
Confidence 46999 999999999999999999999998754
No 115
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=23.06 E-value=49 Score=27.74 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.0
Q ss_pred cCCCCCCHHHHHHHHHhhhhcee
Q 030372 66 GWELDETVKEAALRESFEEAGVM 88 (178)
Q Consensus 66 ~ve~gEs~~eaa~REv~EEtGl~ 88 (178)
+++..+-..+.+.||++||+++-
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG 430 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIG 430 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcc
Confidence 45667777889999999999876
No 116
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.32 E-value=64 Score=19.53 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.2
Q ss_pred HHHHHhhhhceeeccc
Q 030372 77 ALRESFEEAGVMGNVE 92 (178)
Q Consensus 77 a~REv~EEtGl~~~~~ 92 (178)
-+|++.|+||+++.+.
T Consensus 23 ~ik~I~~~tg~~I~i~ 38 (61)
T cd02393 23 TIKKIIEETGVKIDIE 38 (61)
T ss_pred HHHHHHHHHCCEEEeC
Confidence 5799999999997643
No 117
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=21.30 E-value=93 Score=23.35 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=11.9
Q ss_pred CEEeccccCCCCCCH
Q 030372 59 GMMFPKGGWELDETV 73 (178)
Q Consensus 59 ~W~lPgG~ve~gEs~ 73 (178)
.|.+|-|.++.|+-+
T Consensus 128 dWY~PEG~mEGg~Kl 142 (192)
T COG4353 128 DWYFPEGGMEGGPKL 142 (192)
T ss_pred eeeccCccccccccc
Confidence 399999999976544
Done!