BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030373
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 90/132 (68%), Gaps = 1/132 (0%)
Query: 34 DNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAI 93
D +HG+I L PL ++ IDT QFQRLR +KQLG + V+PGA H+RFEHSLGV +LAG +
Sbjct: 22 DPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV 81
Query: 94 QKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSL 153
L + Q EL I D+ V++AGL HD+GHGPFSH F+ F+P KW+HEQ S+
Sbjct: 82 HALGEKQP-ELQISERDVLCVQIAGLCHDLGHGPFSHXFDGRFIPLARPEVKWTHEQGSV 140
Query: 154 KMVDHIVDEHHI 165
+H+++ + I
Sbjct: 141 XXFEHLINSNGI 152
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution.
pdb|2HEK|B Chain B, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution
Length = 371
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 16/127 (12%)
Query: 30 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLA 89
K D ++G + + L+ ID+ FQRLR +KQLG+ +LV+P A H+RFEHSLGVY +
Sbjct: 3 KEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHIT 62
Query: 90 GAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHE 149
+ LK + + VKLAGLLHD+GH PFSH E LPR + SHE
Sbjct: 63 ERICESLKVKEK----------ELVKLAGLLHDLGHPPFSHTTE-VLLPR-----ERSHE 106
Query: 150 QMSLKMV 156
+ +++
Sbjct: 107 DFTERVI 113
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|B Chain B, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|C Chain C, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|D Chain D, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|E Chain E, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|F Chain F, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|G Chain G, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|H Chain H, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
Length = 410
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 9/104 (8%)
Query: 55 FQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTV 114
QRL +KQ+G++ +VYPGA H+RF+HSLG ++L AI +L I + + + V
Sbjct: 33 LQRLTRIKQVGLSSVVYPGAQHTRFQHSLGAFYLXSEAITQLTSKGNF---IFDSEAEAV 89
Query: 115 KLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDH 158
+ A LLHD+GHGPFSH+ E +V G SHE++SL + +
Sbjct: 90 QAAILLHDIGHGPFSHVLE----DTIVQGV--SHEEISLXLXER 127
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 22 QEQLIRFSKNVHDNVHGNIYLD-PLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFE 80
+EQ + K D VH I++ + L I++ + QRLR +KQLG + + GA HSRF
Sbjct: 30 KEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFS 89
Query: 81 HSLGVYWLAGAAIQKLKQNQGLE-LGID--NFDIQTVKL-AGLLHDVGHGPFSHLFEREF 136
HSLGVY + + ++N +E LG + N D + + L A LLHDVGHGP+SH FE F
Sbjct: 90 HSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF 149
>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant
In Complex With Nadph Fragment
pdb|1Q7C|B Chain B, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant
In Complex With Nadph Fragment
Length = 244
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 15 HANFASSQEQLIRFSKNVHDNVHG-NIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPG 73
ANFA+++ LI FSK++ V I ++ +A FI+T+ + L D ++ G+ V G
Sbjct: 148 QANFAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAG 207
Query: 74 AVHSRFEHSLGVYWLA 89
+ E + V +LA
Sbjct: 208 RLGGAQEIANAVAFLA 223
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 111 IQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKW 146
+ LAGL +D+ H +H EREF+P + K+
Sbjct: 668 VYKTPLAGLFNDIEH---NHCIEREFIPESMENVKF 700
>pdb|2PGS|A Chain A, Crystal Structure Of A Putative Deoxyguanosinetriphosphate
Triphosphohydrolase From Pseudomonas Syringae Pv.
Phaseolicola 1448a
Length = 451
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 62 KQLGVTHLVYPGA----VHSRFEHSLGVYWLAGAAIQKLKQN--QGLELGIDNFDI-QTV 114
++LG V+P + +H+R HSL V + + ++ + L D D+ V
Sbjct: 43 RRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGXRVGETLRAALPDWCDPSDLGXVV 102
Query: 115 KLAGLLHDVGHGPFSHLFE 133
+ A L HD+G+ PF H E
Sbjct: 103 QSACLAHDIGNPPFGHSGE 121
>pdb|3KBR|A Chain A, The Crystal Structure Of Cyclohexadienyl Dehydratase
Precursor From Pseudomonas Aeruginosa Pa01
Length = 239
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 54 QFQRLRDLKQLGVTHLVYPGAVHSRFEHS 82
+FQ L + Q GVT +V PG + +F +
Sbjct: 114 RFQTLEQIDQPGVTAIVNPGGTNEKFARA 142
>pdb|1PP7|U Chain U, Crystal Structure Of The T. Vaginalis Initiator Binding
Protein Bound To The Ferredoxin Inr
Length = 131
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 74 AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGID----NFDIQTVKLAGLLHDVG 124
A + + E +G+ W++ + K+N L +GI N +++ + L HD G
Sbjct: 46 ASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKLNTLNVNLRDLAFEQLQHDKG 100
>pdb|1PP8|U Chain U, Crystal Structure Of The T. Vaginalis Ibp39 Initiator
Binding Domain (ibd) Bound To The Alpha-scs Inr Element
pdb|1PP8|P Chain P, Crystal Structure Of The T. Vaginalis Ibp39 Initiator
Binding Domain (ibd) Bound To The Alpha-scs Inr Element
pdb|1PP8|F Chain F, Crystal Structure Of The T. Vaginalis Ibp39 Initiator
Binding Domain (ibd) Bound To The Alpha-scs Inr Element
pdb|1PP8|V Chain V, Crystal Structure Of The T. Vaginalis Ibp39 Initiator
Binding Domain (ibd) Bound To The Alpha-scs Inr Element
pdb|1PP8|M Chain M, Crystal Structure Of The T. Vaginalis Ibp39 Initiator
Binding Domain (ibd) Bound To The Alpha-scs Inr Element
pdb|1PP8|O Chain O, Crystal Structure Of The T. Vaginalis Ibp39 Initiator
Binding Domain (ibd) Bound To The Alpha-scs Inr Element
Length = 132
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 74 AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGID----NFDIQTVKLAGLLHDVG 124
A + + E +G+ W++ + K+N L +GI N +++ + L HD G
Sbjct: 46 ASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKLNTLNVNLRDLAFEQLQHDKG 100
>pdb|2DQB|A Chain A, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|B Chain B, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|C Chain C, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|D Chain D, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|E Chain E, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|F Chain F, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
Length = 376
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 48 KFIDTEQFQRLRDLKQLGVTHLVYPGAV----HSRFEHSLGVYWLAGAAIQKLKQNQGLE 103
+ + T F+RL Q V PG +R H+L V ++ + + L N+ L
Sbjct: 48 RILHTTAFRRLEYKTQ------VLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLT 101
Query: 104 LGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHI 159
I L HD+GH PF H E + H +L+++ H+
Sbjct: 102 EAI-----------ALSHDLGHPPFGHTGEHVLNALXQDHGGFEHNAQALRILTHL 146
>pdb|2GMS|A Chain A, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMS|B Chain B, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMU|A Chain A, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
pdb|2GMU|B Chain B, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
Length = 390
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 12 PPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQL 64
P V NF + + L F VH+NV YLD L F+ Q + ++ L
Sbjct: 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGL-FVGNHQIELFDEIDYL 385
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 21 SQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFE 80
SQ+ + S HD G A + +D +Q Q+L +K L + H + +HS
Sbjct: 225 SQKHGVILSTTGHDGPFGAF----CAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAY 280
Query: 81 HSLGVYWLAGAAIQKL 96
+ + AG + +L
Sbjct: 281 AGVDNMYFAGMEVAEL 296
>pdb|3B8X|A Chain A, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
pdb|3B8X|B Chain B, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
Length = 390
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 12 PPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQL 64
P V NF + + L F VH+NV YLD L F+ Q + ++ L
Sbjct: 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGL-FVGNHQIELFDEIDYL 385
>pdb|2R0T|A Chain A, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
pdb|2R0T|B Chain B, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
Length = 390
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 12 PPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQL 64
P V NF + + L F VH+NV YLD L F+ Q + ++ L
Sbjct: 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGL-FVGNHQIELFDEIDYL 385
>pdb|3GR9|A Chain A, Crystal Structure Of Cold H188k S187n
pdb|3GR9|B Chain B, Crystal Structure Of Cold H188k S187n
pdb|3GR9|C Chain C, Crystal Structure Of Cold H188k S187n
pdb|3GR9|D Chain D, Crystal Structure Of Cold H188k S187n
pdb|3GR9|E Chain E, Crystal Structure Of Cold H188k S187n
pdb|3GR9|F Chain F, Crystal Structure Of Cold H188k S187n
pdb|3GR9|G Chain G, Crystal Structure Of Cold H188k S187n
pdb|3GR9|H Chain H, Crystal Structure Of Cold H188k S187n
Length = 390
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 12 PPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQL 64
P V NF + + L F VH+NV YLD L F+ Q + ++ L
Sbjct: 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGL-FVGNHQIELFDEIDYL 385
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,559,900
Number of Sequences: 62578
Number of extensions: 215772
Number of successful extensions: 437
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 21
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)