Query 030373
Match_columns 178
No_of_seqs 197 out of 1287
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2681 Metal-dependent phosph 100.0 2E-44 4.3E-49 322.7 11.8 155 22-176 18-180 (498)
2 COG1078 HD superfamily phospho 100.0 1.2E-43 2.6E-48 320.4 12.4 133 28-166 2-145 (421)
3 PRK01286 deoxyguanosinetriphos 100.0 9.9E-29 2.1E-33 217.9 10.1 120 41-175 28-150 (336)
4 TIGR01353 dGTP_triPase deoxygu 99.9 2.3E-27 4.9E-32 212.2 10.5 128 42-175 5-141 (381)
5 PRK05318 deoxyguanosinetriphos 99.9 3.2E-25 7E-30 201.2 10.0 131 41-175 24-159 (432)
6 PRK01096 deoxyguanosinetriphos 99.9 1.3E-24 2.8E-29 197.7 9.5 130 40-175 26-183 (440)
7 PRK03007 deoxyguanosinetriphos 99.9 9.5E-24 2.1E-28 191.4 9.7 119 40-175 35-165 (428)
8 PRK04926 dgt deoxyguanosinetri 99.9 3.1E-23 6.7E-28 191.0 8.4 126 41-175 31-208 (503)
9 COG0232 Dgt dGTP triphosphohyd 99.8 4.7E-21 1E-25 172.7 8.0 123 41-175 34-164 (412)
10 PF01966 HD: HD domain; Inter 99.1 2.9E-11 6.4E-16 87.6 3.6 77 78-166 1-77 (122)
11 cd00077 HDc Metal dependent ph 98.9 4.4E-09 9.6E-14 76.1 6.2 70 77-159 2-71 (145)
12 TIGR00488 putative HD superfam 98.5 2.4E-07 5.3E-12 73.2 6.9 72 76-158 7-84 (158)
13 smart00471 HDc Metal dependent 98.5 6.3E-07 1.4E-11 63.7 7.4 68 75-158 2-69 (124)
14 TIGR03401 cyanamide_fam HD dom 98.4 9.5E-07 2.1E-11 74.6 8.2 80 76-176 55-135 (228)
15 COG1418 Predicted HD superfami 98.4 6.8E-07 1.5E-11 75.2 6.5 63 76-162 35-97 (222)
16 COG1713 Predicted HD superfami 98.2 4E-06 8.6E-11 69.2 7.3 83 76-175 16-106 (187)
17 TIGR00295 conserved hypothetic 98.2 4.6E-06 1E-10 66.8 7.3 60 77-157 13-72 (164)
18 PRK10119 putative hydrolase; P 98.1 9.5E-06 2.1E-10 68.8 7.8 77 74-176 23-101 (231)
19 TIGR03276 Phn-HD phosphonate d 98.1 3E-06 6.4E-11 69.5 4.2 68 71-159 19-86 (179)
20 PRK00227 glnD PII uridylyl-tra 98.1 8.4E-06 1.8E-10 78.6 7.1 100 46-176 334-448 (693)
21 TIGR01596 cas3_HD CRISPR-assoc 98.0 2.1E-05 4.6E-10 61.6 6.4 82 80-166 3-86 (177)
22 PRK13480 3'-5' exoribonuclease 97.9 2.8E-05 6.1E-10 68.6 6.9 109 50-173 123-241 (314)
23 PRK05007 PII uridylyl-transfer 97.9 3.6E-05 7.7E-10 76.0 8.1 111 44-176 413-544 (884)
24 PRK12703 tRNA 2'-O-methylase; 97.9 4.4E-05 9.5E-10 68.2 7.7 39 77-126 187-225 (339)
25 PRK07152 nadD putative nicotin 97.9 2.5E-05 5.4E-10 69.0 6.1 73 75-158 194-270 (342)
26 PRK04374 PII uridylyl-transfer 97.9 2.9E-05 6.3E-10 76.6 7.1 108 45-176 403-532 (869)
27 PRK03381 PII uridylyl-transfer 97.9 2.9E-05 6.3E-10 75.6 7.0 100 46-176 374-488 (774)
28 PRK05092 PII uridylyl-transfer 97.8 3.4E-05 7.3E-10 76.4 6.8 109 46-176 447-576 (931)
29 TIGR00277 HDIG uncharacterized 97.8 0.00012 2.5E-09 49.7 7.2 71 77-175 4-74 (80)
30 PRK00275 glnD PII uridylyl-tra 97.8 5.8E-05 1.3E-09 74.6 7.9 111 44-176 412-543 (895)
31 PRK03059 PII uridylyl-transfer 97.8 7E-05 1.5E-09 73.8 8.2 111 44-176 392-523 (856)
32 PRK00106 hypothetical protein; 97.7 0.00011 2.3E-09 69.2 8.1 58 76-157 349-406 (535)
33 PRK10885 cca multifunctional t 97.7 5.9E-05 1.3E-09 68.6 6.2 105 45-176 180-299 (409)
34 PRK01759 glnD PII uridylyl-tra 97.7 7.3E-05 1.6E-09 73.6 7.0 110 45-176 389-519 (854)
35 TIGR01693 UTase_glnD [Protein- 97.7 0.00014 3E-09 71.4 8.9 111 45-176 381-511 (850)
36 PRK12705 hypothetical protein; 97.5 0.00028 6.1E-09 66.1 7.3 58 76-157 322-379 (508)
37 TIGR03319 YmdA_YtgF conserved 97.5 0.00034 7.4E-09 65.5 7.4 58 77-158 329-386 (514)
38 TIGR02692 tRNA_CCA_actino tRNA 97.5 0.0003 6.5E-09 64.7 6.8 98 58-176 227-336 (466)
39 PRK12704 phosphodiesterase; Pr 97.4 0.00041 8.8E-09 65.1 7.4 58 77-158 335-392 (520)
40 COG2844 GlnD UTP:GlnB (protein 97.4 0.00035 7.5E-09 68.4 6.6 125 29-175 383-528 (867)
41 COG4341 Predicted HD phosphohy 97.4 0.00016 3.6E-09 58.8 3.4 69 70-160 23-93 (186)
42 PRK13298 tRNA CCA-pyrophosphor 97.4 0.00048 1E-08 63.1 6.7 106 45-176 180-302 (417)
43 PF00233 PDEase_I: 3'5'-cyclic 97.3 0.0011 2.5E-08 55.8 8.4 53 76-133 2-54 (237)
44 COG2206 c-di-GMP phosphodieste 97.3 0.00058 1.3E-08 60.5 6.9 43 75-126 147-189 (344)
45 TIGR03760 ICE_TraI_Pfluor inte 97.0 0.003 6.4E-08 53.2 7.4 45 78-126 68-120 (218)
46 COG1480 Predicted membrane-ass 97.0 0.003 6.5E-08 60.9 8.0 81 75-175 488-580 (700)
47 COG3294 HD supefamily hydrolas 96.5 0.018 3.9E-07 49.4 8.4 98 44-162 26-136 (269)
48 COG3437 Response regulator con 96.1 0.014 3E-07 52.6 6.0 44 75-126 183-226 (360)
49 COG1896 Predicted hydrolases o 95.6 0.031 6.7E-07 46.2 5.9 65 53-124 10-74 (193)
50 PRK11031 guanosine pentaphosph 95.5 0.049 1.1E-06 50.7 7.5 43 79-125 324-366 (496)
51 KOG3689 Cyclic nucleotide phos 95.4 0.027 5.9E-07 54.8 5.5 53 74-133 429-483 (707)
52 PRK10854 exopolyphosphatase; P 95.4 0.073 1.6E-06 49.7 8.1 43 79-125 330-374 (513)
53 TIGR02621 cas3_GSU0051 CRISPR- 94.2 0.061 1.3E-06 53.4 4.6 50 74-134 672-721 (844)
54 PF08668 HDOD: HDOD domain; I 94.0 0.055 1.2E-06 43.2 3.3 45 78-132 95-139 (196)
55 COG1639 Predicted signal trans 92.9 0.12 2.6E-06 45.5 3.8 86 79-176 118-213 (289)
56 PF07514 TraI_2: Putative heli 91.9 0.37 7.9E-06 42.9 5.7 79 40-125 28-118 (327)
57 TIGR02562 cas3_yersinia CRISPR 89.8 0.47 1E-05 48.4 4.8 49 111-161 113-164 (1110)
58 COG3481 Predicted HD-superfami 89.7 0.32 6.9E-06 42.8 3.1 50 67-126 124-180 (287)
59 COG2254 Predicted HD superfami 89.4 0.63 1.4E-05 39.7 4.6 56 104-165 43-99 (230)
60 PF13023 HD_3: HD domain; PDB: 88.2 0.86 1.9E-05 36.4 4.5 39 77-124 22-60 (165)
61 PRK03826 5'-nucleotidase; Prov 87.0 2 4.3E-05 35.6 6.0 63 54-124 8-70 (195)
62 PF12917 HD_2: HD containing h 85.6 1.9 4.1E-05 36.6 5.2 45 74-124 26-70 (215)
63 COG2316 Predicted hydrolase (H 85.4 1.1 2.4E-05 37.1 3.7 37 78-125 48-84 (212)
64 COG0248 GppA Exopolyphosphatas 80.6 5.5 0.00012 37.5 6.8 44 79-125 328-371 (492)
65 PRK09694 helicase Cas3; Provis 80.5 4.1 8.9E-05 41.0 6.2 89 75-165 24-131 (878)
66 PF13328 HD_4: HD domain; PDB: 76.6 2 4.2E-05 33.4 2.2 32 77-124 19-50 (153)
67 PF05153 DUF706: Family of unk 67.4 4 8.7E-05 35.4 2.2 40 72-126 57-96 (253)
68 COG0337 AroB 3-dehydroquinate 61.4 7.8 0.00017 35.2 3.0 29 122-156 242-271 (360)
69 TIGR02578 cas_TM1811_Csm1 CRIS 56.5 3.6 7.9E-05 39.9 0.0 12 115-126 2-13 (648)
70 PF04263 TPK_catalytic: Thiami 56.0 19 0.00042 27.5 3.9 36 58-93 77-112 (123)
71 PF13875 DUF4202: Domain of un 49.1 67 0.0015 26.7 6.3 55 111-176 48-110 (185)
72 KOG1573 Aldehyde reductase [Ge 43.6 21 0.00045 29.5 2.5 14 112-125 116-129 (204)
73 COG1353 Predicted CRISPR-assoc 41.6 16 0.00034 36.5 1.8 17 110-126 4-20 (799)
74 cd07995 TPK Thiamine pyrophosp 39.4 42 0.0009 27.4 3.7 37 58-94 83-119 (208)
75 cd08197 DOIS 2-deoxy-scyllo-in 39.3 47 0.001 29.7 4.3 29 120-155 231-260 (355)
76 COG4339 Uncharacterized protei 39.2 1.4E+02 0.0031 24.9 6.7 62 76-166 40-101 (208)
77 TIGR01378 thi_PPkinase thiamin 35.9 47 0.001 27.2 3.5 36 58-93 79-114 (203)
78 cd08198 DHQS-like2 Dehydroquin 34.7 46 0.00099 30.2 3.5 29 120-155 248-277 (369)
79 PF01761 DHQ_synthase: 3-dehyd 33.4 35 0.00076 29.4 2.5 29 120-155 177-206 (260)
80 cd04279 ZnMc_MMP_like_1 Zinc-d 33.0 7.2 0.00016 30.1 -1.7 12 115-126 104-115 (156)
81 TIGR00691 spoT_relA (p)ppGpp s 32.3 25 0.00054 34.4 1.5 30 79-124 21-50 (683)
82 PF13186 SPASM: Iron-sulfur cl 32.1 46 0.001 20.9 2.4 31 33-65 25-55 (64)
83 cd08196 DHQS-like1 Dehydroquin 31.7 58 0.0013 29.1 3.6 13 122-135 224-236 (346)
84 PRK12404 stage V sporulation p 31.2 50 0.0011 29.8 3.1 52 124-177 28-81 (334)
85 PRK08304 stage V sporulation p 30.6 43 0.00093 30.3 2.6 52 124-177 30-83 (337)
86 TIGR02682 cas_csx11 CRISPR-ass 29.6 61 0.0013 33.1 3.7 18 109-126 11-28 (918)
87 TIGR02845 spore_V_AD stage V s 27.7 59 0.0013 29.3 2.9 52 124-177 24-77 (327)
88 PRK14021 bifunctional shikimat 27.0 81 0.0018 29.8 3.9 14 121-135 426-439 (542)
89 cd08195 DHQS Dehydroquinate sy 26.8 90 0.002 27.4 4.0 15 121-136 233-247 (345)
90 PF10906 DUF2697: Protein of u 24.9 64 0.0014 22.6 2.1 18 45-62 4-22 (68)
91 KOG1229 3'5'-cyclic nucleotide 24.7 1.1E+02 0.0024 29.3 4.2 49 74-127 502-550 (775)
92 COG4086 Predicted secreted pro 23.8 1.4E+02 0.003 26.6 4.4 32 145-176 208-239 (299)
93 PRK13951 bifunctional shikimat 23.5 83 0.0018 29.5 3.3 45 120-174 382-429 (488)
94 PRK11092 bifunctional (p)ppGpp 23.2 39 0.00085 33.3 1.1 30 79-124 46-75 (702)
95 PRK13299 tRNA CCA-pyrophosphor 22.4 2.9E+02 0.0063 25.1 6.5 32 45-77 199-231 (394)
96 COG5470 Uncharacterized conser 22.0 1E+02 0.0022 23.0 2.9 27 40-66 58-86 (96)
97 cd08549 G1PDH_related Glycerol 22.0 3.3E+02 0.0071 23.8 6.6 13 156-168 282-294 (332)
98 COG3261 HycE Ni,Fe-hydrogenase 21.3 79 0.0017 29.1 2.5 22 111-132 111-133 (382)
99 PF00487 FA_desaturase: Fatty 20.4 63 0.0014 25.2 1.6 17 112-128 16-32 (257)
100 KOG3688 Cyclic GMP phosphodies 20.1 58 0.0013 30.9 1.5 55 67-126 210-264 (554)
No 1
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=100.00 E-value=2e-44 Score=322.70 Aligned_cols=155 Identities=55% Similarity=0.854 Sum_probs=147.9
Q ss_pred hhhhhhccccccCCCCcceecChhHHHHhcCHHHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccC
Q 030373 22 QEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQG 101 (178)
Q Consensus 22 ~~~~~~~~k~i~Dpv~g~i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~ 101 (178)
-++.....+.|+|+|||.|++++.+.+||+||+|||||+++|||..++|||||+||||+|||||+.+|+..++.|+++++
T Consensus 18 ~~~~~~~~~ii~d~vhg~i~l~pli~~lidt~~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~ 97 (498)
T KOG2681|consen 18 SRQILDPSKIINDNVHGEIELPPLIIKLIDTPLFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQC 97 (498)
T ss_pred ccccCCHHHhhccccCceecCChHHHHHhccHHHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCC
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCC--------CChhhhh
Q 030373 102 LELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHID--------LDFEMIK 173 (178)
Q Consensus 102 ~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~--------~~~~~I~ 173 (178)
.|++|++.|..++++||||||||||||||.||..|.+.+.++..|.||++|..|++++.++.++. ++.++++
T Consensus 98 ~El~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~f~~~v~s~~e~~HE~~si~~i~~i~~~~~i~~~~~~~~~~~~~~~~ 177 (498)
T KOG2681|consen 98 PELCITEVDLQAVQVAALLHDIGHGPFSHLFEGEFTPMVRSGPEFYHEDMSIDMIKKISNEMQIKRIARCLLNIDHQDAD 177 (498)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhheecccccCCcccchhhhHHHHHHHHhhhhhhhhHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999998877 8889998
Q ss_pred hcc
Q 030373 174 KVK 176 (178)
Q Consensus 174 ~I~ 176 (178)
.||
T Consensus 178 ~vK 180 (498)
T KOG2681|consen 178 AVK 180 (498)
T ss_pred HHH
Confidence 887
No 2
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=320.39 Aligned_cols=133 Identities=50% Similarity=0.806 Sum_probs=118.2
Q ss_pred ccccccCCCCcceecChhHHHHhcCHHHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCC
Q 030373 28 FSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGID 107 (178)
Q Consensus 28 ~~k~i~Dpv~g~i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~ 107 (178)
..|.|+|||||+|++++++.+|||||+|||||+|+|||.+++|||||+||||+||||||++|+++++.|..+.. ..++
T Consensus 2 ~~K~ikDpVHg~I~l~~~i~~LIdT~~FQRLRrIkQLG~a~lvyPgAnHTRFeHSLGV~~la~~~~~~l~~~~~--~~~~ 79 (421)
T COG1078 2 MEKVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHLARRLLEHLEKNSE--EEID 79 (421)
T ss_pred CceEeecCcCceEEcCHHHHHHhCCHHHHHHHHhhhccceeEecCCCcccccchhhHHHHHHHHHHHHHhhccc--cccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999886543 3466
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHH-----------HHHHhCCCC
Q 030373 108 NFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVD-----------HIVDEHHID 166 (178)
Q Consensus 108 ~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~-----------~il~~~g~~ 166 (178)
+.+..++++||||||||||||||++|.++... ....||+.+.+++. .++++++++
T Consensus 80 ~~~~~~~~~AALLHDIGHgPFSH~fE~~~~~~----~~~~He~~~~~ii~~~~~e~~~~~~~i~~~~~~~ 145 (421)
T COG1078 80 EEERLLVRLAALLHDIGHGPFSHTFEYVLDKN----LGFYHEDVTQRIIKNGEIEINLVLNKILDKHGFD 145 (421)
T ss_pred hHHHHHHHHHHHHHccCCCccccchHHHhccc----ccccHHHHHHHHhcCCchhhhhHHhhhhhhcCcC
Confidence 77788999999999999999999999987432 23369999999985 567787776
No 3
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.95 E-value=9.9e-29 Score=217.90 Aligned_cols=120 Identities=24% Similarity=0.415 Sum_probs=103.1
Q ss_pred ecChhHHHHhcCHHHHhHHhHhhhcccceecCCCCc--cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHH
Q 030373 41 YLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAG 118 (178)
Q Consensus 41 ~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAA 118 (178)
++....++||+|+.||||++++|+ +++|+++| |||+|||||+++|+.+++.|. ++ ..++++||
T Consensus 28 ~F~rD~drii~s~~frRL~~ktQv----~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~--------~~---~~l~~aaa 92 (336)
T PRK01286 28 EFQRDRDRIIHSKAFRRLKHKTQV----FINPEGDHYRTRLTHTLEVAQIARTIARALR--------LN---EDLTEAIA 92 (336)
T ss_pred hhhhhHHHHhCCHHHHhhhcccee----cccCCCcccccHHHHHHHHHHHHHHHHHHhC--------CC---HHHHHHHH
Confidence 466778999999999999999998 36799988 999999999999999998853 33 35899999
Q ss_pred HhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHh-CCCCCChhhhhhc
Q 030373 119 LLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDE-HHIDLDFEMIKKV 175 (178)
Q Consensus 119 LlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~-~g~~~~~~~I~~I 175 (178)
|+|||||+||||.+|.++...+....+|+||++|.+|+.++..+ .|++++....+-|
T Consensus 93 L~HDiGh~PfgH~gE~~l~~~~~~~~~f~hn~~s~ri~~~l~~~~~glnLT~~tL~gi 150 (336)
T PRK01286 93 LGHDLGHTPFGHAGEDALNELMKEYGGFEHNEQSLRVVDKLEKRYDGLNLTWEVREGI 150 (336)
T ss_pred HHhcCCCCCCcchHHHHHHHhccccCCCcHHHHHHHHHHHHhhcCCCccCCHHHHhhH
Confidence 99999999999999998755443335799999999999999866 5999998877655
No 4
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=99.94 E-value=2.3e-27 Score=212.24 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=103.2
Q ss_pred cChhHHHHhcCHHHHhHHhHhhhcccceecCCC----CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHH
Q 030373 42 LDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGA----VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLA 117 (178)
Q Consensus 42 ~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a----~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iA 117 (178)
+....++||+|+.||||++++| |||++ .|||++|||||+++|+.++..|.............+..++++|
T Consensus 5 FerD~dRii~s~~frRL~~ktQ------v~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a 78 (381)
T TIGR01353 5 FERDYDRIIHSSAFRRLQDKTQ------VFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETA 78 (381)
T ss_pred HhhhHHHHhCCHHHhhhccCce------eCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence 4567899999999999999999 45554 6999999999999999999988653211111123357899999
Q ss_pred HHhhhcCCCCCCchhhhhhhhhccCCC-CccHHHHHHHHHHHHHHh----CCCCCChhhhhhc
Q 030373 118 GLLHDVGHGPFSHLFEREFLPRVVSGC-KWSHEQMSLKMVDHIVDE----HHIDLDFEMIKKV 175 (178)
Q Consensus 118 ALlHDiGh~PfsH~~E~~~~~~~~~~~-~~~HE~~s~~ii~~il~~----~g~~~~~~~I~~I 175 (178)
||+|||||+||||.+|.++...+...+ +++|+.+|.+|+..+-+. .|++++...++.|
T Consensus 79 ~L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q~~ri~~~Le~~~~~~~GLNLT~~tL~~i 141 (381)
T TIGR01353 79 CLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQTFRILTTLEKRRRAKGGLNLTWRTLAGI 141 (381)
T ss_pred HHHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhccCCcCCcCCCHHHHHHH
Confidence 999999999999999998755444333 799999999999998764 4799998887765
No 5
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.92 E-value=3.2e-25 Score=201.20 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=102.6
Q ss_pred ecChhHHHHhcCHHHHhHHhHhh-hcccceecCCCCccccchHHHHHHHHHHHHHHHH-HccCccCCCCHHHHHHHHHHH
Q 030373 41 YLDPLALKFIDTEQFQRLRDLKQ-LGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLK-QNQGLELGIDNFDIQTVKLAG 118 (178)
Q Consensus 41 ~~~~~~~~IIdt~~fqRLr~I~Q-lg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~-~~~~~~~~i~~~d~~~v~iAA 118 (178)
.+....++||+|+.||||++++| +|.....| .|||++|||||+++|+.++..|. ...+ +......+..++++||
T Consensus 24 ~F~rD~dRii~s~~frRL~~ktQV~~~~~~d~---~~tRltHslev~~i~r~~~~~~~~~~~~-~~~~~~~~~~l~~a~~ 99 (432)
T PRK05318 24 PYQRDRARILHSAAFRRLQAKTQVLGVGENDF---YRTRLTHSLEVAQIGTGIVAQLKKEKQP-ELKPLLPSDSLIESLC 99 (432)
T ss_pred hHHHHHHHHhCCHHHhhhcccceeCCCCCCCC---CcChhHHHHHHHHHHHHHHHHHhhcccc-ccccccccHHHHHHHH
Confidence 45677899999999999999999 45443343 49999999999999999999883 2211 1111011456889999
Q ss_pred HhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHH---hCCCCCChhhhhhc
Q 030373 119 LLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVD---EHHIDLDFEMIKKV 175 (178)
Q Consensus 119 LlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~---~~g~~~~~~~I~~I 175 (178)
|+|||||+||||.+|.++...+...++++|+.+|.||+.++-. ..|+|++...++-|
T Consensus 100 L~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNaQslRIlt~Le~~~~~~GLNLT~~tL~gi 159 (432)
T PRK05318 100 LAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQTFRILTKLEPYTEHFGMNLTRRTLLGI 159 (432)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCccccHHHHHHH
Confidence 9999999999999999876554444589999999999998874 46999998887765
No 6
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.91 E-value=1.3e-24 Score=197.66 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=100.8
Q ss_pred eecChhHHHHhcCHHHHhHHhHhhhcccceecCCCC----ccccchHHHHHHHHHHHHHHHHHccCc---cCCCC-HHHH
Q 030373 40 IYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAV----HSRFEHSLGVYWLAGAAIQKLKQNQGL---ELGID-NFDI 111 (178)
Q Consensus 40 i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~----htRf~HSLGV~~la~~i~~~l~~~~~~---~~~i~-~~d~ 111 (178)
-++....++||+|+.||||++++| |||.+. |||++|||||+++|+.++..+.+.-.. ....+ ....
T Consensus 26 ~~F~rD~dRii~s~~frRL~~ktQ------Vfp~~~~d~~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~ 99 (440)
T PRK01096 26 SPFHKDYDRIIFSGSFRRLQRKTQ------VHPLAKNDHIHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIG 99 (440)
T ss_pred CchhhhHHHHhCCHHHhhhccCce------eCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHH
Confidence 356778999999999999999999 556554 999999999999999998877632100 00111 1234
Q ss_pred HHHHHHHHhhhcCCCCCCchhhhhhhhhccCC-----------------CCccHHHHHHHHHHHHHHh---CCCCCChhh
Q 030373 112 QTVKLAGLLHDVGHGPFSHLFEREFLPRVVSG-----------------CKWSHEQMSLKMVDHIVDE---HHIDLDFEM 171 (178)
Q Consensus 112 ~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~-----------------~~~~HE~~s~~ii~~il~~---~g~~~~~~~ 171 (178)
.++++|||+|||||+||||++|.++...+... .+++|+.+|.||+.++-.. .|++++...
T Consensus 100 ~lv~aa~L~HDiGhpPFgH~gE~~i~~~~~~~~~~~~~~~l~~~~~~d~~~FEGNaQslRilt~Le~~~~~~GLNLT~at 179 (440)
T PRK01096 100 AIVQSACLAHDIGNPPFGHFGEDAIREWFQDAAGRGFLDDLSPQERADFLNFEGNAQGFRVLTKLEYHQDDGGMRLTYAT 179 (440)
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcccchhhhccCHHHHHHhcCCcccccHHHHHHHHcccCCCCcccccHHH
Confidence 68999999999999999999999865543211 2799999999999988753 689998887
Q ss_pred hhhc
Q 030373 172 IKKV 175 (178)
Q Consensus 172 I~~I 175 (178)
++.|
T Consensus 180 L~~i 183 (440)
T PRK01096 180 LGTY 183 (440)
T ss_pred HHHH
Confidence 7655
No 7
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.90 E-value=9.5e-24 Score=191.41 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=100.8
Q ss_pred eecChhHHHHhcCHHHHhHHhHhhhcccceecCCC----CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHH
Q 030373 40 IYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGA----VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVK 115 (178)
Q Consensus 40 i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a----~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~ 115 (178)
-++....++||.|+.|+||++++|+ ||.. .|||++|||||+++|+.++..+. ++ ..++.
T Consensus 35 t~FqRDrdRIi~S~afRRL~~KtQV------f~~~~~Df~~tRltHslev~~~~r~~~~~~~--------~~---~~~~~ 97 (428)
T PRK03007 35 TDFARDRARVLHSAALRRLADKTQV------VGPREGDTPRTRLTHSLEVAQIGRGIAAGLG--------CD---PDLVD 97 (428)
T ss_pred CchhhhHHHHhCCHHHHhhhcccee------ccCCCCCccccHHHHHHHHHHHHHHHHHHhC--------CC---HHHHH
Confidence 3567789999999999999999994 4432 48999999999999999998753 32 46899
Q ss_pred HHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhC--------CCCCChhhhhhc
Q 030373 116 LAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEH--------HIDLDFEMIKKV 175 (178)
Q Consensus 116 iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~--------g~~~~~~~I~~I 175 (178)
+|||+|||||+||||.+|.++...+...++++|+.+|.||+.++-.++ |+||+...++.|
T Consensus 98 ~~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQslRIlt~LE~~~~~~~~~~~GLNLT~atL~gi 165 (428)
T PRK03007 98 LAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQTLRILTRLEPKVLDPDGRSAGLNLTRASLDAA 165 (428)
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHhccccccccccccCcccCHHHHhhe
Confidence 999999999999999999987655544558999999999999998654 999998887765
No 8
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=99.88 E-value=3.1e-23 Score=191.00 Aligned_cols=126 Identities=23% Similarity=0.402 Sum_probs=98.7
Q ss_pred ecChhHHHHhcCHHHHhHHhHhhhcccceecC----CCCccccchHHHHHHHHHHHHHHHHHccC-----ccCCCC---H
Q 030373 41 YLDPLALKFIDTEQFQRLRDLKQLGVTHLVYP----GAVHSRFEHSLGVYWLAGAAIQKLKQNQG-----LELGID---N 108 (178)
Q Consensus 41 ~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp----~a~htRf~HSLGV~~la~~i~~~l~~~~~-----~~~~i~---~ 108 (178)
.+.....+||+|+.||||++++| ||| ++.|||++|||||+++|+.|+..+.+... ...+++ .
T Consensus 31 ~ferD~dRIi~S~afrRLq~KtQ------Vfpl~~nd~~rtRltHSleV~~i~r~i~~~i~~~l~~~~~~~~~~~~~~~~ 104 (503)
T PRK04926 31 IFESDRGRIINSAAIRRLQQKTQ------VFPLERNAAVRSRLTHSLEVQQVGRYIAKEILSRLKEQKLLEAYGLDELTG 104 (503)
T ss_pred hHhhhhhHHhCCHHHhhhccCce------eCcCCCCCCeeCHhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 45667899999999999999999 677 78999999999999999999887743210 112332 2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCchhhhhhhhhcc----------------------------------------CCCCccH
Q 030373 109 FDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVV----------------------------------------SGCKWSH 148 (178)
Q Consensus 109 ~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~----------------------------------------~~~~~~H 148 (178)
....++++|||+|||||+||||.+|.++...+. +-.+++|
T Consensus 105 ~~~~lveaa~L~HDiGhpPFGH~GE~ai~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~FEG 184 (503)
T PRK04926 105 PFESIVEMACLMHDIGNPPFGHFGEAAINDWFRQRLDPDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDLCHFEG 184 (503)
T ss_pred chHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhccccccccccccccccccchhcccccchhhhhhhHHHHhhcCCCcc
Confidence 235689999999999999999999987644331 1126889
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhhhhc
Q 030373 149 EQMSLKMVDHIVDEHHIDLDFEMIKKV 175 (178)
Q Consensus 149 E~~s~~ii~~il~~~g~~~~~~~I~~I 175 (178)
..+|.||+.++ .|++++...+..|
T Consensus 185 NaQ~lRilt~L---~GlnLT~atL~~i 208 (503)
T PRK04926 185 NAQGIRLVHTL---LRLNLTYAQVACI 208 (503)
T ss_pred ccchhhhhhhc---cCCCcCHHHHHHH
Confidence 99999999888 6888887766544
No 9
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=99.84 E-value=4.7e-21 Score=172.67 Aligned_cols=123 Identities=22% Similarity=0.292 Sum_probs=101.9
Q ss_pred ecChhHHHHhcCHHHHhHHhHhhhcccceecCC----CCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHH
Q 030373 41 YLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPG----AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKL 116 (178)
Q Consensus 41 ~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~----a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~i 116 (178)
.+.....+||+|..|+||+.++| |||. ..+||++|||.|+++|+.|+..|..+. . .....++..
T Consensus 34 ~F~rDr~RIihSaAfRRLq~KTQ------Vf~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~----~--~~~~dL~E~ 101 (412)
T COG0232 34 EFERDRDRIIHSAAFRRLQDKTQ------VFPLHEGDFYRTRLTHSLEVAQIGRSIARELGLDL----D--LPFEDLVET 101 (412)
T ss_pred hhhccchhhhhhHHHHhhcccce------ecccccCCcccccchhhHHHHHHHHHHHHHhcccc----C--CChHHHHHH
Confidence 35567899999999999999999 4543 256999999999999999999876531 1 223568999
Q ss_pred HHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHh----CCCCCChhhhhhc
Q 030373 117 AGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDE----HHIDLDFEMIKKV 175 (178)
Q Consensus 117 AALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~----~g~~~~~~~I~~I 175 (178)
|||+|||||+||+|.+|.++...+.+.++++|..++.||+.++.++ .|+|++..-++.+
T Consensus 102 a~LaHDiGhPPFGH~GE~ALn~~m~~~gGFEGNAQ~fRIlT~LE~~~~~~~GLNLT~~TL~~~ 164 (412)
T COG0232 102 ACLAHDIGHPPFGHAGEDALNEVMREYGGFEGNAQTFRILTKLEKRYADFGGLNLTRATLEGV 164 (412)
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHcCCCcccchhhHHHHHhhhhccCcCcccccHHHHHhH
Confidence 9999999999999999999876666667899999999999888765 4788888777654
No 10
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=99.14 E-value=2.9e-11 Score=87.63 Aligned_cols=77 Identities=30% Similarity=0.473 Sum_probs=61.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHH
Q 030373 78 RFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVD 157 (178)
Q Consensus 78 Rf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~ 157 (178)
||+||++|+.+|..++..+. . +.+..++.+||||||||+.+.++.++..... ......|+..|..++.
T Consensus 1 ~~~Hs~~V~~~a~~l~~~~~--------~-~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~---~~~~~~H~~~g~~~~~ 68 (122)
T PF01966_consen 1 RFEHSLRVAELAERLADRLG--------L-EEDRELLRIAALLHDIGKIPTPDFIEKKPEE---RGKFYRHEEIGAEILK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------H-HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHH---HCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcC--------C-chhHHHHHHHHHHHhcCCCCCchHHHHhHhh---hchhhhhHHHHHHHHH
Confidence 79999999999999998753 1 5678999999999999999988877753100 1224679999999999
Q ss_pred HHHHhCCCC
Q 030373 158 HIVDEHHID 166 (178)
Q Consensus 158 ~il~~~g~~ 166 (178)
.+....+.+
T Consensus 69 ~~~~~~~~~ 77 (122)
T PF01966_consen 69 EFLKELGLP 77 (122)
T ss_dssp HHHHHHCHC
T ss_pred HhhhhcchH
Confidence 998887765
No 11
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.88 E-value=4.4e-09 Score=76.10 Aligned_cols=70 Identities=33% Similarity=0.465 Sum_probs=54.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHH
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMV 156 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii 156 (178)
++++||+.|+.++..+++.+ ..+..+...+.+||||||+|+.+..+.+-..- ....+.|+..|..++
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~--------~~~~~~~~~l~~aaLlHDig~~~~~~~~~~~~-----~~~~~~h~~~g~~~~ 68 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEEL--------GLSEEDIELLRLAALLHDIGKPGTPDAITEEE-----SELEKDHAIVGAEIL 68 (145)
T ss_pred chHHHHHHHHHHHHHHHHHh--------CcCHHHHHHHHHHHHHHhcCCccCccccCHHH-----HHHHHhhHHHHHHHH
Confidence 57899999999999998763 22456788999999999999999888651110 012468999999998
Q ss_pred HHH
Q 030373 157 DHI 159 (178)
Q Consensus 157 ~~i 159 (178)
+.+
T Consensus 69 ~~~ 71 (145)
T cd00077 69 REL 71 (145)
T ss_pred HHh
Confidence 775
No 12
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=98.53 E-value=2.4e-07 Score=73.22 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=46.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC-CCCCchhhhhh---hh-hc-cCCCCccHH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH-GPFSHLFEREF---LP-RV-VSGCKWSHE 149 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh-~PfsH~~E~~~---~~-~~-~~~~~~~HE 149 (178)
-.|++||++|+.+|+++++.+ +.+ .+.+.+||||||||+ .|.....+..- .+ .. ....+..|.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~--------~~d---~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 75 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEAN--------KLD---SKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKLLHA 75 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------CcC---HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccccHH
Confidence 468999999999999999873 333 456899999999998 33222111100 00 00 011245699
Q ss_pred HHHHHHHHH
Q 030373 150 QMSLKMVDH 158 (178)
Q Consensus 150 ~~s~~ii~~ 158 (178)
+.|+.++++
T Consensus 76 ~vGa~ll~~ 84 (158)
T TIGR00488 76 YVGAYILKR 84 (158)
T ss_pred HHHHHHHHH
Confidence 999988763
No 13
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=98.49 E-value=6.3e-07 Score=63.74 Aligned_cols=68 Identities=31% Similarity=0.354 Sum_probs=51.0
Q ss_pred CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHH
Q 030373 75 VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLK 154 (178)
Q Consensus 75 ~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ 154 (178)
.+++++||+.|+.++..+++.+. . .+...+.+||||||+|+.+..+...... + ....|+..+..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~--------~--~~~~~~~~a~LlHDig~~~~~~~~~~~~-~-----~~~~h~~~~~~ 65 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELG--------L--LDIELLLLAALLHDIGKPGTPDSFLVKT-S-----VLEDHHFIGAE 65 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcC--------h--HHHHHHHHHHHHHcccCccCCHHHhcCc-c-----HHHHhHHHHHH
Confidence 45789999999999999987632 1 3567899999999999998766554210 0 13578888888
Q ss_pred HHHH
Q 030373 155 MVDH 158 (178)
Q Consensus 155 ii~~ 158 (178)
+++.
T Consensus 66 ~~~~ 69 (124)
T smart00471 66 ILLE 69 (124)
T ss_pred HHHh
Confidence 8766
No 14
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=98.43 E-value=9.5e-07 Score=74.63 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=60.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKM 155 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~i 155 (178)
|. |.||+.|+.+|..+++.- .+..+ .|.+++.+||||||||-.+ + +. ......+|..|...
T Consensus 55 ~~-~~Hs~RV~~~a~~ia~~e----~~~~~---~D~evl~lAALLHDIG~~~-----~--~~----~~~~~~fe~~ga~~ 115 (228)
T TIGR03401 55 ET-YNHSLRVYYYGLAIARDQ----FPEWD---LSDETWFLTCLLHDIGTTD-----E--NM----TATKMSFEFYGGIL 115 (228)
T ss_pred hh-hHHHHHHHHHHHHHHHHh----ccccC---CCHHHHHHHHHHHhhcccc-----c--cC----CcccCCHHHHHHHH
Confidence 44 999999999999988641 00123 3467899999999999642 1 11 12356899999999
Q ss_pred HHHHHHhC-CCCCChhhhhhcc
Q 030373 156 VDHIVDEH-HIDLDFEMIKKVK 176 (178)
Q Consensus 156 i~~il~~~-g~~~~~~~I~~I~ 176 (178)
++.+|.++ |++ ++.++.|+
T Consensus 116 A~~~L~~~~G~~--~~~~~~V~ 135 (228)
T TIGR03401 116 ALDVLKEQTGAN--QDQAEAVA 135 (228)
T ss_pred HHHHHHHCCCCC--HHHHHHHH
Confidence 99999999 987 88888774
No 15
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=98.39 E-value=6.8e-07 Score=75.17 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=49.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKM 155 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~i 155 (178)
-++++||+.|+++|+.|+.. .+. |..+++.||||||||+.- +. ...++ |...+.++
T Consensus 35 ~~~l~H~~~Va~lA~~Ia~~--------~g~---D~~l~~~aaLLHDIg~~~-----~~-------~~~~~-h~~~gae~ 90 (222)
T COG1418 35 QHVLEHSLRVAYLAYRIAEE--------EGV---DPDLALRAALLHDIGKAI-----DH-------EPGGS-HAEIGAEI 90 (222)
T ss_pred chHHHHHHHHHHHHHHHHHH--------cCC---CHHHHHHHHHHHhhcccc-----cc-------CCccc-hHHHHHHH
Confidence 46699999999999999976 334 488999999999999862 10 11234 99999999
Q ss_pred HHHHHHh
Q 030373 156 VDHIVDE 162 (178)
Q Consensus 156 i~~il~~ 162 (178)
++.++..
T Consensus 91 a~~~~~~ 97 (222)
T COG1418 91 ARKFLED 97 (222)
T ss_pred HHHHccc
Confidence 9988876
No 16
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=98.23 E-value=4e-06 Score=69.15 Aligned_cols=83 Identities=30% Similarity=0.365 Sum_probs=53.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC-CCCCchhhhhhhhhcc----C--CCCccH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH-GPFSHLFEREFLPRVV----S--GCKWSH 148 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh-~PfsH~~E~~~~~~~~----~--~~~~~H 148 (178)
-.||+||+||+..|.++++. ++.+ .+.+.+||++||++. .| +..+..-.. . ...++-
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~--------y~~d---~~kA~~AgilHD~aK~~p-----~~~~~~~~~~~~~~~~~~~~~~ 79 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEA--------YGLD---PEKAYLAGILHDIAKELP-----EQKLLKIAKKYGLELDLERESP 79 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------hCCC---HHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhCCCchhhccCh
Confidence 34999999999999999987 4455 445999999999997 44 332222110 0 113344
Q ss_pred HHHHHHHHHHHHHh-CCCCCChhhhhhc
Q 030373 149 EQMSLKMVDHIVDE-HHIDLDFEMIKKV 175 (178)
Q Consensus 149 E~~s~~ii~~il~~-~g~~~~~~~I~~I 175 (178)
+.+-.+.-.+++++ +|++ +++.++.|
T Consensus 80 ~llH~~vgay~~~~~fGi~-De~VL~AI 106 (187)
T COG1713 80 LLLHGKVGAYLLKEEFGIK-DEEVLSAI 106 (187)
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 45555555666654 8886 45555554
No 17
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=98.22 E-value=4.6e-06 Score=66.76 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=43.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHH
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMV 156 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii 156 (178)
+.+.||+.|+.+|..+++.+..+ +. ..|...+.+||||||||.... .++.|...|.+++
T Consensus 13 ~~~~Hs~~Va~~A~~ia~~~~~~-----~~-~~d~~~l~~aaLLHDIGK~~~---------------~~~~H~~~G~~iL 71 (164)
T TIGR00295 13 SVRRHCLAVARVAMELAENIRKK-----GH-EVDMDLVLKGALLHDIGRART---------------HGFEHFVKGAEIL 71 (164)
T ss_pred cHHHHHHHHHHHHHHHHHHhccc-----cc-cCCHHHHHHHHHHhcCCcccC---------------CCCCHHHHHHHHH
Confidence 35899999999999999875321 11 135789999999999997531 1256777777544
Q ss_pred H
Q 030373 157 D 157 (178)
Q Consensus 157 ~ 157 (178)
+
T Consensus 72 ~ 72 (164)
T TIGR00295 72 R 72 (164)
T ss_pred H
Confidence 3
No 18
>PRK10119 putative hydrolase; Provisional
Probab=98.13 E-value=9.5e-06 Score=68.82 Aligned_cols=77 Identities=19% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHH
Q 030373 74 AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSL 153 (178)
Q Consensus 74 a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~ 153 (178)
..|+ +.|...|..+|.+|++. .+ .|..+|.+||||||+|..|- .. .....|...+.
T Consensus 23 ~~HD-~~Hi~RV~~lA~~Ia~~--------e~---~D~~vv~lAAlLHDv~d~~k-------~~-----~~~~~~~~~~a 78 (231)
T PRK10119 23 AAHD-ICHFRRVWATAQKLAAD--------DD---VDMLVVLTACYFHDIVSLAK-------NH-----PQRHRSSILAA 78 (231)
T ss_pred CccC-hHHHHHHHHHHHHHHHh--------cC---CCHHHHHHHHHHhhcchhhh-------cC-----ccccchhhHHH
Confidence 4588 99999999999999864 22 35779999999999985421 11 11224778899
Q ss_pred HHHHHHHHh--CCCCCChhhhhhcc
Q 030373 154 KMVDHIVDE--HHIDLDFEMIKKVK 176 (178)
Q Consensus 154 ~ii~~il~~--~g~~~~~~~I~~I~ 176 (178)
+.+..+|.+ .|++ ++.|+.|+
T Consensus 79 ~~a~~~L~~~~~g~~--~~~i~~V~ 101 (231)
T PRK10119 79 EETRRILREDFPDFP--AEKIEAVC 101 (231)
T ss_pred HHHHHHHHHcccCcC--HHHHHHHH
Confidence 999999999 7887 88888874
No 19
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.11 E-value=3e-06 Score=69.50 Aligned_cols=68 Identities=29% Similarity=0.372 Sum_probs=46.5
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHH
Q 030373 71 YPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQ 150 (178)
Q Consensus 71 yp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~ 150 (178)
|-|-.-|+++|+|.|+.+|.+-. -+ +-+.+|||||||||..-.. .|.. ...+...+|+.
T Consensus 19 y~Ge~Vs~leH~LQ~A~lA~~~G------------ad----~elvvAALLHDIGhll~~~-~~~~----~~~g~~~~He~ 77 (179)
T TIGR03276 19 YGGEAVSQLEHALQCAQLAEAAG------------AD----DELIVAAFLHDIGHLLADE-GATP----MGRGGDDHHEE 77 (179)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcC------------CC----HHHHHHHHHHhcchhhhcc-cccc----cccCCCccHHH
Confidence 44556799999999999887642 11 2458999999999975221 1110 11244678999
Q ss_pred HHHHHHHHH
Q 030373 151 MSLKMVDHI 159 (178)
Q Consensus 151 ~s~~ii~~i 159 (178)
.+..+++..
T Consensus 78 iga~~Lr~~ 86 (179)
T TIGR03276 78 LAADYLREL 86 (179)
T ss_pred HHHHHHHHH
Confidence 999887654
No 20
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.07 E-value=8.4e-06 Score=78.61 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=72.0
Q ss_pred HHHHhcCH-H-HHhHHhHhhhcccceecCCC-----------Cc--cccchHHHHHHHHHHHHHHHHHccCccCCCCHHH
Q 030373 46 ALKFIDTE-Q-FQRLRDLKQLGVTHLVYPGA-----------VH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFD 110 (178)
Q Consensus 46 ~~~IIdt~-~-fqRLr~I~Qlg~~~~vyp~a-----------~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d 110 (178)
..+|+.+| . +.-|+.+.++|.-..++|.- .| |=.+|++-|...+..+...+ ..
T Consensus 334 f~kiL~s~~~~~~~L~~M~~~GvL~~llPE~~~i~g~~Q~d~yH~ytVDeHTL~~l~~~~~~~~~~------------~~ 401 (693)
T PRK00227 334 FFRLLSSPVNSRRVIKQMDRHGLWERIVPEWDRIRGLMPREPSHIHTIDEHSLNTVANCALETVTV------------AR 401 (693)
T ss_pred HHHHHcCCCChHHHHHHHHHcCCHHHHhHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhhhcc------------Cc
Confidence 55677775 3 33367777777766666631 22 44679999888776664321 12
Q ss_pred HHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 111 IQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 111 ~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
..++.+|||+||||++. +.+|++.|+++++.++++.+++ +++++.|+
T Consensus 402 ~~lL~LAALlHDIGKg~-----------------g~dHs~~GA~~A~~i~~RLgl~--~~~~e~V~ 448 (693)
T PRK00227 402 PDLLLLGALYHDIGKGY-----------------PRPHEQVGAEMVARAARRMGLN--LRDRAVVQ 448 (693)
T ss_pred cHHHHHHHHHHhhcCCC-----------------CCChhHHHHHHHHHHHHHcCcC--HHHHHHHH
Confidence 45779999999999873 2379999999999999999988 88888775
No 21
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=97.96 E-value=2.1e-05 Score=61.62 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhh--ccCCCCccHHHHHHHHHH
Q 030373 80 EHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPR--VVSGCKWSHEQMSLKMVD 157 (178)
Q Consensus 80 ~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~--~~~~~~~~HE~~s~~ii~ 157 (178)
+|++.|+.+|+.+.. +..+.. ..+.....+++.+||++||||.. +-.|+...... ........|+..|..++.
T Consensus 3 ~H~~~v~~~a~~l~~-~~~~~~--~~~~~~~~~~~~~~~~lHDiGK~--~~~FQ~~~~~~~~~~~~~~~~H~~~s~~~~~ 77 (177)
T TIGR01596 3 EHLLDVAAVAEKLKN-LDIVIA--DLIGKLLRELLDLLALLHDIGKI--NPGFQAKLMKAYKRGRRVASRHSLLSAKLLD 77 (177)
T ss_pred HHHHHHHHHHHHHhc-ccHHHH--HHHhhHHHHHHHHHHHHccCccC--CHHHHHHhhcccccccCCCCCHHHHHHHHHH
Confidence 699999999988641 111000 01122357899999999999995 22234322110 112345789999999999
Q ss_pred HHHHhCCCC
Q 030373 158 HIVDEHHID 166 (178)
Q Consensus 158 ~il~~~g~~ 166 (178)
.++.+.+.+
T Consensus 78 ~~~~~~~~~ 86 (177)
T TIGR01596 78 ALLIKKGYE 86 (177)
T ss_pred HHHHHcccc
Confidence 998887765
No 22
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=97.91 E-value=2.8e-05 Score=68.65 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=70.7
Q ss_pred hcCHHHHhHH-hH-hhhcccceecCCCC--c-----cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHh
Q 030373 50 IDTEQFQRLR-DL-KQLGVTHLVYPGAV--H-----SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLL 120 (178)
Q Consensus 50 Idt~~fqRLr-~I-~Qlg~~~~vyp~a~--h-----tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALl 120 (178)
|.+|.+++|- .+ +.....++.+|.|. | .=++||+.|+.+|..++.. +. .-++.++.++|||
T Consensus 123 i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHay~GGLleHtl~v~~~~~~l~~~--------y~--~~n~dll~agalL 192 (314)
T PRK13480 123 MENPNIQRITRHLLKKYQEEFLDYPAATKNHHEFVSGLAYHVVSMLRLAKSICDL--------YP--SLNKDLLYAGIIL 192 (314)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHhhcccccccHHHHHHHHHHHHHHHHHHh--------cc--ccCHHHHHHHHHH
Confidence 4567777643 21 22344566778762 3 2389999999999999864 11 2347799999999
Q ss_pred hhcCCC-CCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhh
Q 030373 121 HDVGHG-PFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIK 173 (178)
Q Consensus 121 HDiGh~-PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~ 173 (178)
||||.. -++......|.. .|.-..|-.++..++...+++.+++ +++..
T Consensus 193 HDiGKi~E~~~~~~~~yT~---eG~LlGHi~lg~~~i~~~~~~l~~~--~e~~~ 241 (314)
T PRK13480 193 HDLGKVIELSGPVSTTYTL---EGNLLGHISIMVNEIAKAADELQID--GEEVL 241 (314)
T ss_pred HHhhhHHHhcCCCccCccc---cCEeccHHHHHHHHHHHHHHHcCCC--HHHHH
Confidence 999973 111111100111 2334789999999999999988875 55443
No 23
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.90 E-value=3.6e-05 Score=76.00 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=76.1
Q ss_pred hhHHHHhcCHHHH--hHHhHhhhcccceecCC-----------CCc--cccchHHHHHHHHHHHHHHHHHccCccCCC--
Q 030373 44 PLALKFIDTEQFQ--RLRDLKQLGVTHLVYPG-----------AVH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGI-- 106 (178)
Q Consensus 44 ~~~~~IIdt~~fq--RLr~I~Qlg~~~~vyp~-----------a~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i-- 106 (178)
....+|+.+|.-. =|+...+.|.-..++|. ..| |=.+|++-|...+..+...-... +..+
T Consensus 413 ~~f~~iL~~~~~~~~~l~~m~~~GlL~~~iPe~~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~---~~~~~~ 489 (884)
T PRK05007 413 KLFMEILRHPGAVSRALLPMHRHSVLSAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKLESFADEETRQ---RHPLCV 489 (884)
T ss_pred HHHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhheeeccccCccccCcHhHHHHHHHHHHHHHhcccccc---cchHHH
Confidence 4456677775332 37777777777666774 122 22399999999988775321100 0000
Q ss_pred ----CHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 107 ----DNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 107 ----~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
.-.+..++.+|||+||||.+- +.+|++.|+++++.++++.+++ +++++.|+
T Consensus 490 ~~~~~~~~~~lL~lAaLlHDIGKg~-----------------~~dHs~~Ga~~a~~il~rl~l~--~~~~~~v~ 544 (884)
T PRK05007 490 ELYPRLPKKELLLLAALFHDIAKGR-----------------GGDHSILGAQDALEFAELHGLN--SRETQLVA 544 (884)
T ss_pred HHHHhcCChhHHHHHHHHHhhcCCC-----------------CCChHHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 001345889999999999861 2379999999999999999988 89998876
No 24
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=97.88 E-value=4.4e-05 Score=68.16 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCC
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~ 126 (178)
..+.||+.|+.+|..+++. ++. |...+.+||||||||..
T Consensus 187 ~l~~Hs~rVa~lA~~LA~~--------~~~---D~~ll~aAALLHDIGK~ 225 (339)
T PRK12703 187 LLIRHVKTVYKLAMRIADC--------INA---DRRLVAAGALLHDIGRT 225 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH--------cCC---CHHHHHHHHHHHhcccc
Confidence 3589999999999999876 233 36788999999999985
No 25
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=97.88 E-value=2.5e-05 Score=68.98 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=48.0
Q ss_pred CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhh----ccCCCCccHHH
Q 030373 75 VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPR----VVSGCKWSHEQ 150 (178)
Q Consensus 75 ~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~----~~~~~~~~HE~ 150 (178)
...|+.||++|+.+|..+++.+ ++++ +.+.+||||||||..-........+... ........|..
T Consensus 194 ~~~~~~HSl~VA~~A~~LA~~~--------g~d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 262 (342)
T PRK07152 194 DEYRYKHCLRVAQLAAELAKKN--------NLDP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLHQY 262 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--------CcCH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHhHH
Confidence 4568999999999999999873 4443 6788999999999963333222221110 00011356888
Q ss_pred HHHHHHHH
Q 030373 151 MSLKMVDH 158 (178)
Q Consensus 151 ~s~~ii~~ 158 (178)
.|+.+++.
T Consensus 263 ~Ga~ll~~ 270 (342)
T PRK07152 263 VGALWLKH 270 (342)
T ss_pred HHHHHHHH
Confidence 88877654
No 26
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.88 E-value=2.9e-05 Score=76.56 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred hHHHHhcCHHHHh-HHhHhhhcccceecCC-----------CC--ccccchHHHHHHHHHHHHHHHHHccCccC------
Q 030373 45 LALKFIDTEQFQR-LRDLKQLGVTHLVYPG-----------AV--HSRFEHSLGVYWLAGAAIQKLKQNQGLEL------ 104 (178)
Q Consensus 45 ~~~~IIdt~~fqR-Lr~I~Qlg~~~~vyp~-----------a~--htRf~HSLGV~~la~~i~~~l~~~~~~~~------ 104 (178)
...+|+.+|.--+ |+...+.|.-..++|. .. +|=.+|++-|...+..+...-.. .+.
T Consensus 403 ef~kiL~~~~~~~~l~~m~~~GvL~~~lPE~~~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~---~~~~~~~~~ 479 (869)
T PRK04374 403 RFMALLRGPRAVETLNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRAD---ERFSIAHEV 479 (869)
T ss_pred HHHHHHcCCChhHHHHHHHHhCCHHHHhhhHHHHhccccccCccCCcHHHHHHHHHHHHHHHhccccc---cccccHHHH
Confidence 4556666653223 6666666666665663 11 25577999998877655421100 000
Q ss_pred --CCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 105 --GIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 105 --~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
.+.. ..++.+|||+||||.|- +.+|++.|+++++.++++.+++ .++++.|+
T Consensus 480 ~~~l~~--~~lL~lAaLlHDIGKg~-----------------~~dHs~~Ga~~a~~i~~Rl~l~--~~~~~~v~ 532 (869)
T PRK04374 480 WPRLRK--PELLLLAGLFHDIAKGR-----------------GGDHSELGAVDARAFCLAHRLS--EGDTELVT 532 (869)
T ss_pred HhccCC--ccHHHHHHHHHhccCCC-----------------CCChHHHhHHHHHHHHHHcCCC--HHHHHHHH
Confidence 1121 34789999999999861 2379999999999999999988 89998876
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.88 E-value=2.9e-05 Score=75.62 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=68.6
Q ss_pred HHHHhcCH--HHHhHHhHhhhcccceecCCC-----------Cc--cccchHHHHHHHHHHHHHHHHHccCccCCCCHHH
Q 030373 46 ALKFIDTE--QFQRLRDLKQLGVTHLVYPGA-----------VH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFD 110 (178)
Q Consensus 46 ~~~IIdt~--~fqRLr~I~Qlg~~~~vyp~a-----------~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d 110 (178)
..+|+.++ .+.-|+.+.+.|.-..++|.- .| |=.+|++-|...+..+...+ .+
T Consensus 374 f~kiL~~~~~~~~~l~~m~~~GvL~~~iPE~~~i~~~~Q~~~~H~ytVd~Htl~~l~~~~~~~~~~----------~~-- 441 (774)
T PRK03381 374 LLVLLGAGPAAVAVIEALDRTGLWGRLLPEWEAVRDLPPRDPVHRWTVDRHLVETAVRAAALTRRV----------AR-- 441 (774)
T ss_pred HHHHHcCCCchHHHHHHHHHhCCHHHhchhHHHhhCCCCCCCCccChHHHHHHHHHHHHHHHHhcc----------CC--
Confidence 45566542 333355566667666666641 12 22368888887766554332 11
Q ss_pred HHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 111 IQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 111 ~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
..++++|||+||||++- +.+|+..|++|++.++++.+++ .++++.|+
T Consensus 442 ~~lL~lAaLlHDiGKg~-----------------~~~Hs~~Ga~~a~~i~~RL~l~--~~~~~~v~ 488 (774)
T PRK03381 442 PDLLLLGALLHDIGKGR-----------------GGDHSVVGAELARQIGARLGLS--PADVALLS 488 (774)
T ss_pred HHHHHHHHHHHhhcCCC-----------------CCChHHHHHHHHHHHHHHcCcC--HHHHHHHH
Confidence 34679999999999861 2379999999999999999988 88888775
No 28
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.84 E-value=3.4e-05 Score=76.42 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=72.1
Q ss_pred HHHHhcCH--HHHhHHhHhhhcccceecCCC-----------Cc--cccchHHHHHHHHHHHHHHHHHccCccCCC----
Q 030373 46 ALKFIDTE--QFQRLRDLKQLGVTHLVYPGA-----------VH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGI---- 106 (178)
Q Consensus 46 ~~~IIdt~--~fqRLr~I~Qlg~~~~vyp~a-----------~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i---- 106 (178)
..+|+-+| .+.-|+.+.++|.-..++|.- .| |=.+|++-|......+...-.. .+..+
T Consensus 447 f~eil~~~~~~~~~l~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~---~~~~~~~~~ 523 (931)
T PRK05092 447 FLDILTSRRNPERVLRRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELA---DEHPLASEL 523 (931)
T ss_pred HHHHHcCCCchHHHHHHHHHhCChHHhcccHHhcccccccccceeccHhHHHHHHHHHHHHHhccccc---ccchhHHHH
Confidence 34456553 234467677777766667741 12 2247999998887776521000 00000
Q ss_pred -C-HHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 107 -D-NFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 107 -~-~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
. -....++.+|||+||||+|- +.+|++.|+++++.+++..+++ .++++.|+
T Consensus 524 ~~~~~~~~~L~lAaLlHDIGKg~-----------------~~dHs~~Ga~~a~~~~~rl~l~--~~~~~~v~ 576 (931)
T PRK05092 524 MPKIESRRALYVAVLLHDIAKGR-----------------PEDHSIAGARIARRLCPRLGLS--PAETETVA 576 (931)
T ss_pred HHhcCCHHHHHHHHHHHHhhcCC-----------------CCCHHHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 0 01246799999999999861 2479999999999999999988 88888875
No 29
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=97.81 E-value=0.00012 Score=49.67 Aligned_cols=71 Identities=28% Similarity=0.358 Sum_probs=47.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHH
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMV 156 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii 156 (178)
..+.|++.|+.+|..+++. .+++ ...+.+||||||||..--. +.. ....|...|..++
T Consensus 4 ~~~~H~~~v~~~a~~la~~--------~~~~---~~~l~~AalLHDiG~~~~~---~~~--------~~~~H~~~g~~~l 61 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARE--------LGLD---VELARRGALLHDIGKPITR---EGV--------IFESHAVVGAEIA 61 (80)
T ss_pred hHHHHHHHHHHHHHHHHHH--------cCCC---HHHHHHHHHHHccCCcccc---hHH--------HHHchHHHHHHHH
Confidence 3478999999999999976 3344 3458899999999975211 000 1246888888766
Q ss_pred HHHHHhCCCCCChhhhhhc
Q 030373 157 DHIVDEHHIDLDFEMIKKV 175 (178)
Q Consensus 157 ~~il~~~g~~~~~~~I~~I 175 (178)
. +.+++ .+.++.|
T Consensus 62 ~----~~~~~--~~~~~~I 74 (80)
T TIGR00277 62 R----KYGEP--LEVIDII 74 (80)
T ss_pred H----HcCCC--HHHHHHH
Confidence 5 44554 5555444
No 30
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.81 E-value=5.8e-05 Score=74.62 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=77.0
Q ss_pred hhHHHHhcCHH--HHhHHhHhhhcccceecCC-----------CCc--cccchHHHHHHHHHHHHHHHHHccCccCCCC-
Q 030373 44 PLALKFIDTEQ--FQRLRDLKQLGVTHLVYPG-----------AVH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGID- 107 (178)
Q Consensus 44 ~~~~~IIdt~~--fqRLr~I~Qlg~~~~vyp~-----------a~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~- 107 (178)
....+|+.+|. +.-|+...++|.-...+|. ..| |=.+|++-|......+...-. ..+..+.
T Consensus 412 ~~f~~iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVdeHtl~~v~~l~~l~~~~~---~~~~p~~~ 488 (895)
T PRK00275 412 SLFIELFKCPIGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKNLRKLRYPEV---SEKFPLAS 488 (895)
T ss_pred HHHHHHHcCCCchHHHHHHHHHcCCHHHhCchHhhEeeeccCcccccCcHHHHHHHHHHHHHHhhcccc---cccCchHH
Confidence 45677888765 3338888888877777774 122 456799999888777642100 0000100
Q ss_pred -----HHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 108 -----NFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 108 -----~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
-....++.+|||+||||.|- +-+|++.|+++++.++++.+++ .++++.|+
T Consensus 489 ~l~~~l~~~~lL~lAaLlHDIGKg~-----------------~~~Hs~~Ga~~a~~i~~rl~l~--~~~~~~v~ 543 (895)
T PRK00275 489 KLMGRLPKPELLYIAGLYHDIGKGR-----------------GGDHSELGAVDAEAFCQRHQLP--AWDTRLVV 543 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhcCC-----------------CCCHHHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 01235789999999999862 1279999999999999999988 89998876
No 31
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.79 E-value=7e-05 Score=73.76 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=76.6
Q ss_pred hhHHHHhcCHH--HHhHHhHhhhcccceecCCC-----------Cc--cccchHHHHHHHHHHHHHHHHHccCccCCCC-
Q 030373 44 PLALKFIDTEQ--FQRLRDLKQLGVTHLVYPGA-----------VH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGID- 107 (178)
Q Consensus 44 ~~~~~IIdt~~--fqRLr~I~Qlg~~~~vyp~a-----------~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~- 107 (178)
....+|+.+|. +.=|+...++|.-..++|.- .| |=.+|++-|...+..+... +. ..+....
T Consensus 392 ~ef~~iL~~~~~~~~~l~~m~~~GlL~~~lPe~~~i~~~~Q~~~~H~ytVd~Htl~~v~~l~~~~~~--~~-~~~~p~~~ 468 (856)
T PRK03059 392 ALFMQILQQPRGITHALRLMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMA--EH-AHEYPFCS 468 (856)
T ss_pred HHHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhheeeeecccccccCcHhHHHHHHHHHHHHhhcc--cc-ccccchHH
Confidence 45677787765 34477778888777777741 22 4567999999887665321 00 0000000
Q ss_pred -----HHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 108 -----NFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 108 -----~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
-....++.+|||+||||++- +-+|+..|+++++.++++.+++ .++++.|+
T Consensus 469 ~~~~~~~~~~lL~LAaLlHDIGKg~-----------------~~~Hs~~GA~~A~~il~rl~l~--~~~~~~V~ 523 (856)
T PRK03059 469 QLIANFDRPWLLYVAALFHDIAKGR-----------------GGDHSTLGAVDARRFCRQHGLA--REDAELVV 523 (856)
T ss_pred HHHHhcCChhHHHHHHHHHhhccCC-----------------CCCchHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 01246889999999999861 2379999999999999999988 89998876
No 32
>PRK00106 hypothetical protein; Provisional
Probab=97.74 E-value=0.00011 Score=69.19 Aligned_cols=58 Identities=31% Similarity=0.523 Sum_probs=44.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKM 155 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~i 155 (178)
.+.+.||++|+.+|..++..+ ++ |...+.+||||||||.. + +..+ ..+|-..|..+
T Consensus 349 qnl~~HSv~VA~lA~~lA~~l--------gl---d~e~a~~AGLLHDIGK~-v----~~e~--------~g~Ha~iGa~l 404 (535)
T PRK00106 349 QNVLRHSVEVGKLAGILAGEL--------GE---NVALARRAGFLHDMGKA-I----DREV--------EGSHVEIGMEF 404 (535)
T ss_pred CcHHHHHHHHHHHHHHHHHHh--------CC---CHHHHHHHHHHHhccCc-c----Cccc--------cCChHHHHHHH
Confidence 456999999999999999873 44 36789999999999986 2 2111 22699999888
Q ss_pred HH
Q 030373 156 VD 157 (178)
Q Consensus 156 i~ 157 (178)
++
T Consensus 405 l~ 406 (535)
T PRK00106 405 AR 406 (535)
T ss_pred HH
Confidence 74
No 33
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=97.74 E-value=5.9e-05 Score=68.59 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=65.1
Q ss_pred hHHHHhcCHHHHh-HHhHhhhcccceecCC-----------CCc---cccchHHHHHHHHHHHHHHHHHccCccCCCCHH
Q 030373 45 LALKFIDTEQFQR-LRDLKQLGVTHLVYPG-----------AVH---SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNF 109 (178)
Q Consensus 45 ~~~~IIdt~~fqR-Lr~I~Qlg~~~~vyp~-----------a~h---tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~ 109 (178)
.+.+++.++.-.+ ++.+.++|.-..++|. ..| +=++|++-|...+..+..
T Consensus 180 El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv~~Htl~~l~~~~~l~~--------------- 244 (409)
T PRK10885 180 ETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDTGIHTLMVLDQAAKLSP--------------- 244 (409)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcHHHHHHHHHHHHHhcCC---------------
Confidence 3455555543223 5555555655555663 112 336788877765554321
Q ss_pred HHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 110 DIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 110 d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
...++.||||||+|.+--. +. .......||..|+++++.+++..+++ .+.++.++
T Consensus 245 -~l~lr~AaLlHDlGK~~t~---~~------~~~~~~gH~~~Ga~~a~~i~~RLk~p--~~~~~~~~ 299 (409)
T PRK10885 245 -SLDVRFAALCHDLGKGLTP---PE------EWPRHHGHEPRGVKLVEQLCQRLRVP--NECRDLAL 299 (409)
T ss_pred -CHHHHHHHHhccccCCCCC---cc------cCcccCchhHhHHHHHHHHHHHcCcC--HHHHHHHH
Confidence 1258999999999986200 10 01123589999999999999999987 77776653
No 34
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.72 E-value=7.3e-05 Score=73.60 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=72.9
Q ss_pred hHHHHhcCHH--HHhHHhHhhhcccceecCC-----------CCc--cccchHHHHHHHHHHHHHHHHHccCccCCC---
Q 030373 45 LALKFIDTEQ--FQRLRDLKQLGVTHLVYPG-----------AVH--SRFEHSLGVYWLAGAAIQKLKQNQGLELGI--- 106 (178)
Q Consensus 45 ~~~~IIdt~~--fqRLr~I~Qlg~~~~vyp~-----------a~h--tRf~HSLGV~~la~~i~~~l~~~~~~~~~i--- 106 (178)
...+|+.+|. ..-|+...+.|+-..++|. ..| |=.+|++-|..-...+...-.. .+..+
T Consensus 389 ef~kiL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~---~~~~~~~~ 465 (854)
T PRK01759 389 RFLRLFNQPNAIKRALVPMHQYGVLTAYLPQWKGIVGLMQFDLFHIYTVDEHTLRVMLKLESFLDEESA---EQHPICHQ 465 (854)
T ss_pred HHHHHHcCCCchHHHHHHHHHhCCHHHhChHHHheeeccCCcccccCcHHHHHHHHHHHHHHHhccccc---ccchhHHH
Confidence 4566777643 2336666666666666664 122 4467999998877766422100 00000
Q ss_pred ---CHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 107 ---DNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 107 ---~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
.-....++.+|||+||||+|- +-+|++.|+++++.+++..+++ .++++.|+
T Consensus 466 ~~~~~~~~~~L~lAaLlHDIGKG~-----------------~~dHs~~Ga~~a~~i~~rl~l~--~~~~~~v~ 519 (854)
T PRK01759 466 IFSQLSDRTLLYIAALFHDIAKGR-----------------GGDHAELGAVDMRQFAQQHGFD--QREIETMA 519 (854)
T ss_pred HHHhcCCHHHHHHHHHHHhhcCCC-----------------CCChhHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 002356789999999999852 2279999999999999999988 89998876
No 35
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.72 E-value=0.00014 Score=71.39 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=72.9
Q ss_pred hHHHHhcCH--HHHhHHhHhhhcccceecCC-----------CCc--cccchHHHHHHHHHHHHHHHHHc-cCc----cC
Q 030373 45 LALKFIDTE--QFQRLRDLKQLGVTHLVYPG-----------AVH--SRFEHSLGVYWLAGAAIQKLKQN-QGL----EL 104 (178)
Q Consensus 45 ~~~~IIdt~--~fqRLr~I~Qlg~~~~vyp~-----------a~h--tRf~HSLGV~~la~~i~~~l~~~-~~~----~~ 104 (178)
...+|+.+| ...-|+.+.++|.-..++|. ..| |=.+|++-|...+..+....... .+. -.
T Consensus 381 ef~~iL~~~~~~~~~l~~m~~~gvL~~~iPe~~~i~~~~Q~~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~ 460 (850)
T TIGR01693 381 LFLELLTSGNGTVRALRAMNRAGVLGRFLPEWGRIVGQMQFDLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMP 460 (850)
T ss_pred HHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhhheeccccCceeecchhHHHHHHHHHHHHHhccccccccccHHHHHh
Confidence 345566653 34446666677766666664 122 22479999999888765321000 000 00
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 105 GIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 105 ~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
+++ +..++.+|||+||||++- +.+|+..|+++++.++++.+++ .++++.|+
T Consensus 461 ~~~--~~~~L~lAaLlHDiGKg~-----------------~~~H~~~Ga~~a~~~~~rl~l~--~~~~~~v~ 511 (850)
T TIGR01693 461 KIE--DPELLYLAALLHDIGKGR-----------------GGDHSVLGAEDARDVCPRLGLD--RPDTELVA 511 (850)
T ss_pred ccC--CHHHHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 111 356789999999999851 2379999999999999999987 88888775
No 36
>PRK12705 hypothetical protein; Provisional
Probab=97.51 E-value=0.00028 Score=66.08 Aligned_cols=58 Identities=34% Similarity=0.548 Sum_probs=43.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKM 155 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~i 155 (178)
.+-+.||+.|+.+|..++.. ++++ ...+..||||||||..- +.. ...+|...|..+
T Consensus 322 qnvl~HSl~VA~lA~~LA~~--------lGld---~d~a~~AGLLHDIGK~i-----e~e--------~~~~H~~iGaeL 377 (508)
T PRK12705 322 QNVLSHSLEVAHLAGIIAAE--------IGLD---PALAKRAGLLHDIGKSI-----DRE--------SDGNHVEIGAEL 377 (508)
T ss_pred chHHHHHHHHHHHHHHHHHH--------cCcC---HHHHHHHHHHHHcCCcc-----hhh--------hcccHHHHHHHH
Confidence 34688999999999999987 4555 34567899999999862 221 135788888877
Q ss_pred HH
Q 030373 156 VD 157 (178)
Q Consensus 156 i~ 157 (178)
++
T Consensus 378 lk 379 (508)
T PRK12705 378 AR 379 (508)
T ss_pred HH
Confidence 64
No 37
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=97.47 E-value=0.00034 Score=65.52 Aligned_cols=58 Identities=36% Similarity=0.580 Sum_probs=42.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHH
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMV 156 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii 156 (178)
+.+.||+.|+.+|..++..+ +++ ...+..||||||||... .| | . ..+|-..|..++
T Consensus 329 ~~l~Hs~~VA~lA~~LA~~l--------gld---~~~a~~AGLLHDIGK~~-~~--e--~--------~~~H~~~Ga~ll 384 (514)
T TIGR03319 329 NVLQHSIEVAHLAGIMAAEL--------GED---VKLAKRAGLLHDIGKAV-DH--E--V--------EGSHVEIGAELA 384 (514)
T ss_pred cHHHHHHHHHHHHHHHHHHh--------CcC---HHHHHHHHHHHhcCccc-ch--h--h--------cccHHHHHHHHH
Confidence 46889999999999999873 454 34667899999999852 11 1 1 246888888776
Q ss_pred HH
Q 030373 157 DH 158 (178)
Q Consensus 157 ~~ 158 (178)
+.
T Consensus 385 ~~ 386 (514)
T TIGR03319 385 KK 386 (514)
T ss_pred HH
Confidence 53
No 38
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=97.46 E-value=0.0003 Score=64.70 Aligned_cols=98 Identities=24% Similarity=0.269 Sum_probs=60.7
Q ss_pred HHhHhhhcccceecCCC------------CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC
Q 030373 58 LRDLKQLGVTHLVYPGA------------VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH 125 (178)
Q Consensus 58 Lr~I~Qlg~~~~vyp~a------------~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh 125 (178)
|+.+.+.|.-..++|.- .++=++||+-|+..+..+... ....++..||||||+|.
T Consensus 227 l~~l~~~glL~~~~Pe~~~~~~~~~~~~h~~~v~~Htl~vl~~~~~l~~~-------------~~~~~l~lAaLLHDiGK 293 (466)
T TIGR02692 227 IDLMVETGLADRVLPEIPALRLEIDEHHQHKDVYEHSLTVLRQAIDLEDD-------------GPDLVLRWAALLHDIGK 293 (466)
T ss_pred HHHHHhhhhhhhcCchHHHHhcccccCCCCCcHHHHHHHHHHHHHhcccc-------------ccCHHHHHHHHHhhccC
Confidence 44444555555555541 125577888877765443110 00236899999999998
Q ss_pred CCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 126 GPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 126 ~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
+. +=..+. . .......|+..|+++++.+++..+++ .++++.|+
T Consensus 294 ~~-t~~~~~----~-g~~~f~gH~~~Ga~~a~~iL~rLk~s--~~~~~~V~ 336 (466)
T TIGR02692 294 PA-TRRFEP----D-GRVSFHHHEVVGAKMVRKRMRALKYS--KQMVEDVS 336 (466)
T ss_pred CC-Cccccc----C-CCcccCcHHHHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 52 000010 0 00112469999999999999999987 88888775
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=97.43 E-value=0.00041 Score=65.09 Aligned_cols=58 Identities=36% Similarity=0.607 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHH
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMV 156 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii 156 (178)
+-+.||+.|+.+|..++.. ++++ ...+..||||||||..+ .| | + ..+|-..|..++
T Consensus 335 n~l~Hs~~Va~lA~~lA~~--------lgld---~~~a~~AgLLHDIGK~~-~~--e--~--------~~~H~~iGa~il 390 (520)
T PRK12704 335 NVLQHSIEVAHLAGLMAAE--------LGLD---VKLAKRAGLLHDIGKAL-DH--E--V--------EGSHVEIGAELA 390 (520)
T ss_pred cHhHHHHHHHHHHHHHHHH--------hCcC---HHHHHHHHHHHccCcCc-cc--c--c--------cCCHHHHHHHHH
Confidence 3568999999999999987 4555 34568999999999975 12 1 1 346988888876
Q ss_pred HH
Q 030373 157 DH 158 (178)
Q Consensus 157 ~~ 158 (178)
+.
T Consensus 391 ~~ 392 (520)
T PRK12704 391 KK 392 (520)
T ss_pred HH
Confidence 53
No 40
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00035 Score=68.37 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=79.9
Q ss_pred cccccCCCCcceecChhHHHHhcCHH--HHhHHhHhhhcccceecCCC-------------CccccchHHHHHHHHHHHH
Q 030373 29 SKNVHDNVHGNIYLDPLALKFIDTEQ--FQRLRDLKQLGVTHLVYPGA-------------VHSRFEHSLGVYWLAGAAI 93 (178)
Q Consensus 29 ~k~i~Dpv~g~i~~~~~~~~IIdt~~--fqRLr~I~Qlg~~~~vyp~a-------------~htRf~HSLGV~~la~~i~ 93 (178)
.+.+++|.+-.-+-....-.|+.+|. -+-|+...+.|.-...-|.- ..|==+|+|.|+.....+.
T Consensus 383 ~~~l~~~l~~~peA~~~Fl~il~~~~~~~r~l~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~lr~v~~l~~~a 462 (867)
T COG2844 383 LRLLNQPLREDPEARRLFLSILRSPNAIRRTLRPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTLRVVLKLARFA 462 (867)
T ss_pred ccccCcccccCHHHHHHHHHHHhCCCcHHHHHHHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHHHHHHHHHHhh
Confidence 45566666644333344555555552 22255555555433323321 2255689999998888877
Q ss_pred HHHHHccCccCCCC------HHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCC
Q 030373 94 QKLKQNQGLELGID------NFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDL 167 (178)
Q Consensus 94 ~~l~~~~~~~~~i~------~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~ 167 (178)
..-... +.++. -++.+++.+|||+||||+| .+-+|++.|++.++.+.+.+|++
T Consensus 463 ~~~~~~---~hPl~~~l~~~~~~~elLylAaLfHDIaKG-----------------RggDHs~lGA~~a~~fc~~hGL~- 521 (867)
T COG2844 463 RGEARH---EHPLASQLMPRLEKRELLYLAALFHDIAKG-----------------RGGDHSILGAEDARRFCERHGLN- 521 (867)
T ss_pred cccccc---cCccHHhhccCCCChhHHHHHHHHHHhhcC-----------------CCCchHHhhHHHHHHHHHHcCCC-
Confidence 542211 11111 1256899999999999976 36789999999999999999987
Q ss_pred Chhhhhhc
Q 030373 168 DFEMIKKV 175 (178)
Q Consensus 168 ~~~~I~~I 175 (178)
..+++.|
T Consensus 522 -~~e~~lv 528 (867)
T COG2844 522 -SRETELV 528 (867)
T ss_pred -HHHhHHH
Confidence 7777765
No 41
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=97.37 E-value=0.00016 Score=58.80 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=46.2
Q ss_pred ecCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC--CCCCchhhhhhhhhccCCCCcc
Q 030373 70 VYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH--GPFSHLFEREFLPRVVSGCKWS 147 (178)
Q Consensus 70 vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh--~PfsH~~E~~~~~~~~~~~~~~ 147 (178)
-|-|-.-|+.+|+|..+.+|++=. - -..+-+||||||||| .+|+|.--.. +.....
T Consensus 23 ~y~ge~VTq~eHaLQ~AtlAerdG------------a----~~~lVaaALLHDiGhl~~~~g~~ps~~------~i~d~~ 80 (186)
T COG4341 23 GYSGEPVTQLEHALQCATLAERDG------------A----DTALVAAALLHDIGHLYADYGHTPSAA------GIDDPF 80 (186)
T ss_pred ccccCcchhhhhHHHHhHHHHhcC------------C----cHHHHHHHHHHhHHHHhhhcCCCcccc------ccchhH
Confidence 355556899999999999887643 1 135689999999999 4554432211 112345
Q ss_pred HHHHHHHHHHHHH
Q 030373 148 HEQMSLKMVDHIV 160 (178)
Q Consensus 148 HE~~s~~ii~~il 160 (178)
||+.+..+++++.
T Consensus 81 hee~~~~vL~~~f 93 (186)
T COG4341 81 HEEFATPVLRKLF 93 (186)
T ss_pred HHHHhHHHHHHhC
Confidence 8888888876553
No 42
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=97.35 E-value=0.00048 Score=63.10 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=66.3
Q ss_pred hHHHHhcCHHHHh-HHhHhhhcccceecCCC-------C-----c---cccchHHHHHHHHHHHHHHHHHccCccCCCCH
Q 030373 45 LALKFIDTEQFQR-LRDLKQLGVTHLVYPGA-------V-----H---SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDN 108 (178)
Q Consensus 45 ~~~~IIdt~~fqR-Lr~I~Qlg~~~~vyp~a-------~-----h---tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~ 108 (178)
.+.+++.++.-.+ ++-+.++|.-..+||.- . | +.+.|++-|...+..+ +.
T Consensus 180 El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~~~g~~q~~~~~~~~~d~~~htl~~l~~~~~~--------------~~ 245 (417)
T PRK13298 180 ETEKALKTDNPHVYFQVLYECNALKFLFPEIDFLYEKPYFLNSFFKKFNLGNYILMGLSKISKL--------------TK 245 (417)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHHHcCCCCCccccCCchhHHHHHHHHHHHHHhc--------------CC
Confidence 4667777765555 77777888777778751 0 1 2234544443333221 10
Q ss_pred HHHHHHHHHHHhhhcCCCC-CCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 109 FDIQTVKLAGLLHDVGHGP-FSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 109 ~d~~~v~iAALlHDiGh~P-fsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
...++.||||||+|.++ +... + ..+....||..|.++++.+++...++ .+.++.++
T Consensus 246 --~l~lR~AaLlHDiGK~~t~~~~-~-------~~~~~~gHe~~G~~~a~~i~~RLk~p--n~~~~~~~ 302 (417)
T PRK13298 246 --DIDIRFSYLCQFLGSMIPINQI-K-------RNYKKIFFDKYAASLIKNLCKRFKIP--SYIRNIAV 302 (417)
T ss_pred --CHHHHHHHHHhhhcCCCCCCcc-C-------CCCcccChhHhHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 12589999999999963 1111 1 01234689999999999999999987 66666553
No 43
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=97.34 E-value=0.0011 Score=55.84 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhh
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFE 133 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E 133 (178)
|+ +.|...|++.+..++....- ...+++.|..++.+|||+||+||+=++-.+.
T Consensus 2 HN-~~Ha~dV~q~~~~ll~~~~~----~~~l~~~e~~alliAal~HDv~HpG~~N~fl 54 (237)
T PF00233_consen 2 HN-FRHAADVLQFVYYLLSNGGL----REYLSPLEIFALLIAALCHDVDHPGVNNAFL 54 (237)
T ss_dssp SS-HHHHHHHHHHHHHHHHHGGG----GTTS-HHHHHHHHHHHHHTTTT-SSSCHHHH
T ss_pred CC-HHHHHHHHHHHHHHHHccCc----cccCCHHHHHHHHHHHHHhcCCCCccccchh
Confidence 77 89999999999999865322 1358889999999999999999986655554
No 44
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=97.34 E-value=0.00058 Score=60.50 Aligned_cols=43 Identities=42% Similarity=0.571 Sum_probs=38.9
Q ss_pred CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCC
Q 030373 75 VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 75 ~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~ 126 (178)
..| +.||..|+.+|..+++. +++++.+.+.+.+||||||||..
T Consensus 147 ~~t-~~Hs~~va~~a~~ia~~--------lgl~~~~i~~l~~aalLHDIGKi 189 (344)
T COG2206 147 DYT-YGHSVRVAELAEAIAKK--------LGLSEEKIEELALAGLLHDIGKI 189 (344)
T ss_pred hhH-HHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhhcccc
Confidence 345 89999999999999988 68999999999999999999974
No 45
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=96.99 E-value=0.003 Score=53.21 Aligned_cols=45 Identities=27% Similarity=0.191 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCccCCCCHHH--------HHHHHHHHHhhhcCCC
Q 030373 78 RFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFD--------IQTVKLAGLLHDVGHG 126 (178)
Q Consensus 78 Rf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d--------~~~v~iAALlHDiGh~ 126 (178)
=++||+.|+..|.++++...- + .+.++++ ..++.+||||||||+.
T Consensus 68 Ll~HtLev~~~a~~l~~~y~~--p--~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 68 LLDHTLEVTAAAVRLSKGYLL--P--PGAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--C--CCCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 389999999999999865311 1 1233222 3589999999999986
No 46
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=96.96 E-value=0.003 Score=60.88 Aligned_cols=81 Identities=25% Similarity=0.353 Sum_probs=54.5
Q ss_pred CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCc-hhhhhhhhhccCCCCccHH----
Q 030373 75 VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSH-LFEREFLPRVVSGCKWSHE---- 149 (178)
Q Consensus 75 ~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH-~~E~~~~~~~~~~~~~~HE---- 149 (178)
--| |.||+=|+.||...++.+..+ ..++++||+-||||..==.| ..|+ +. +..-.|+
T Consensus 488 PGT-y~HSvmVAnLAEaAa~~IGan-----------~lLaRVgayYHDIGK~~rP~~FiEN----Q~--~g~N~Hd~lsP 549 (700)
T COG1480 488 PGT-YQHSVMVANLAEAAAEEIGAN-----------SLLARVGAYYHDIGKMKRPLFFIEN----QM--GGKNPHDDLSP 549 (700)
T ss_pred CCC-ccchhhHHHHHHHHHHHhCCc-----------hHHHHHHHHHhhcccccCCcccccc----cc--CCCCCcccCCH
Confidence 345 999999999999999986432 67999999999999731111 1222 11 2234565
Q ss_pred HHHHHHHH-------HHHHhCCCCCChhhhhhc
Q 030373 150 QMSLKMVD-------HIVDEHHIDLDFEMIKKV 175 (178)
Q Consensus 150 ~~s~~ii~-------~il~~~g~~~~~~~I~~I 175 (178)
.+|+.|+. .++++|+++ ++.++.|
T Consensus 550 ~lSa~II~sHv~eGv~mar~y~lP--q~iidii 580 (700)
T COG1480 550 QLSALIIISHVKEGVEMAREYKLP--QEIIDII 580 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHcCCC--HHHHHHH
Confidence 56666663 567889987 5555544
No 47
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=96.47 E-value=0.018 Score=49.39 Aligned_cols=98 Identities=24% Similarity=0.208 Sum_probs=60.9
Q ss_pred hhHHHHhcCHHHHh---HHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccCccC-----CCCHHH-HHHH
Q 030373 44 PLALKFIDTEQFQR---LRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLEL-----GIDNFD-IQTV 114 (178)
Q Consensus 44 ~~~~~IIdt~~fqR---Lr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~-----~i~~~d-~~~v 114 (178)
..+..|+..++.|- +.++.-+|---+-=+|..|.| =|+.-|-+|.+.|.+.+-... ..+.+| ..++
T Consensus 26 ~vy~~l~~D~ev~A~l~maNv~av~RlgYNDHG~vHa~-----Iva~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~viv 100 (269)
T COG3294 26 DVYELLLNDEEVQAYLKMANVMAVGRLGYNDHGPVHAR-----IVANSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIV 100 (269)
T ss_pred HHHHHHhcCHHHHHHHHHhhhhhhhhhcccCCCceeee-----eccchHHHHHHHHHhcCCCcccccccCCchhhhhHHH
Confidence 45666777777665 444444433222236778877 578888888888877541111 123344 4578
Q ss_pred HHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHH----HHHHHh
Q 030373 115 KLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMV----DHIVDE 162 (178)
Q Consensus 115 ~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii----~~il~~ 162 (178)
.+||.|||||+-- + .-+||..|+-++ ++||.+
T Consensus 101 lLga~LHDIGnsV-------------H---Rd~H~~~sa~La~~IldrIL~k 136 (269)
T COG3294 101 LLGAYLHDIGNSV-------------H---RDDHELYSAVLALDILDRILSK 136 (269)
T ss_pred HHHHHHHhccchh-------------c---cccHHHHhHHHhHHHHHHHhhh
Confidence 9999999999741 1 347887776554 555554
No 48
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=96.08 E-value=0.014 Score=52.65 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=38.9
Q ss_pred CccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCC
Q 030373 75 VHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 75 ~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~ 126 (178)
.+..-+|+..|++.++.++.. +++++.+...++.||.|||||..
T Consensus 183 ~~etg~H~~Rv~~~~~~lAe~--------lgLse~~v~~i~~AapLHDIGKv 226 (360)
T COG3437 183 DYETGDHLERVAQYSELLAEL--------LGLSEEEVDLIKKAAPLHDIGKV 226 (360)
T ss_pred ccchhhHHHHHHHHHHHHHHH--------hCCCHHHHHHHHhccchhhcccc
Confidence 445567899999999999987 67999999999999999999984
No 49
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=95.61 E-value=0.031 Score=46.19 Aligned_cols=65 Identities=28% Similarity=0.259 Sum_probs=47.1
Q ss_pred HHHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 53 EQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 53 ~~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
+..+||++|.-.|....=-+ ..+|--+||.+|+.+|..+...+.. .+ ..++ ..-+...||.||++
T Consensus 10 ~~~~~Lk~i~R~gw~~~g~~-~~eSvaeHs~~va~la~~la~~~~~-~~--~~vn---~~k~~~~AL~HD~~ 74 (193)
T COG1896 10 ALLSRLKDIPRTGWLLRGIW-NPESVAEHSFRVAILALLLADILNA-KG--GEVN---PEKVALMALVHDLP 74 (193)
T ss_pred HHHHHHHhhhccchhhcCCC-CcccHHHHHHHHHHHHHHHHHHHHh-cc--cccC---HHHHHHHHHhcccH
Confidence 77889998887654322111 1378899999999999999988765 22 2233 55678899999998
No 50
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.52 E-value=0.049 Score=50.66 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC
Q 030373 79 FEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH 125 (178)
Q Consensus 79 f~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh 125 (178)
-.|.-.|+.+|..+.+.+... .++++.+..++++||+|||||.
T Consensus 324 ~~ha~~v~~~a~~Lf~~l~~~----~~l~~~~~~LL~~Aa~LhdiG~ 366 (496)
T PRK11031 324 TEQAQRVAKLADNFLQQVENE----WHLEPRSRELLISACQLHEIGL 366 (496)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----cCCChHHHHHHHHHHHHHhcCC
Confidence 478889999999999887653 4577888999999999999996
No 51
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=95.39 E-value=0.027 Score=54.76 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=43.4
Q ss_pred CCccccchHHHHHHHHHHHHHH--HHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhh
Q 030373 74 AVHSRFEHSLGVYWLAGAAIQK--LKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFE 133 (178)
Q Consensus 74 a~htRf~HSLGV~~la~~i~~~--l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E 133 (178)
+-|| +-|...|++.+..++.. |. ..+++-|+.++.+||+|||++|.=++-.+.
T Consensus 429 ~YHN-w~HAf~VaQ~m~~lL~t~~L~------~~fTdlEiLalliAalcHDlDHrGtNN~f~ 483 (707)
T KOG3689|consen 429 PYHN-WRHAFDVAQAMFALLKTPKLQ------NKFTDLEILALLIAALCHDLDHRGTNNSYL 483 (707)
T ss_pred cchh-HHHHHHHHHHHHHHHhchhHH------hhcChHHHHHHHHHHHHccCCCCCCCcHHH
Confidence 4588 89999999999999876 33 246788899999999999999976655554
No 52
>PRK10854 exopolyphosphatase; Provisional
Probab=95.36 E-value=0.073 Score=49.71 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHHHHHHHHccCccC-C-CCHHHHHHHHHHHHhhhcCC
Q 030373 79 FEHSLGVYWLAGAAIQKLKQNQGLEL-G-IDNFDIQTVKLAGLLHDVGH 125 (178)
Q Consensus 79 f~HSLGV~~la~~i~~~l~~~~~~~~-~-i~~~d~~~v~iAALlHDiGh 125 (178)
-.|.--|+.+|..+.+.+... . . .++.+..++++||+|||||.
T Consensus 330 ~~ha~~V~~~a~~LFd~l~~~----h~~~~~~~~~~LL~~Aa~LhdiG~ 374 (513)
T PRK10854 330 REQARRVLETTMQLYEQWREQ----NPKLAHPQLEALLKWAAMLHEVGL 374 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----hcccCCHHHHHHHHHHHHHHhcCC
Confidence 578889999999999988652 2 2 36788999999999999996
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=94.21 E-value=0.061 Score=53.42 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhh
Q 030373 74 AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFER 134 (178)
Q Consensus 74 a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~ 134 (178)
..++=-+|..+|+.+|..++..+ ++ +....++++|||+||+|+. +-.|+.
T Consensus 672 ~~q~L~eHl~~va~lA~~fa~~~--------gl-~~~~~~~~laGllHDlGK~--~~~FQ~ 721 (844)
T TIGR02621 672 DEVALSDHLDNVFEVAKNFVAKL--------GL-GDLDKAVRQAARLHDLGKQ--RPRFQT 721 (844)
T ss_pred CcEEHHHHHHHHHHHHHHHHHHc--------Cc-hHHHHHHHHHHHhcccccC--CHHHHH
Confidence 44566799999999999999874 33 2224567899999999984 555665
No 54
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=94.01 E-value=0.055 Score=43.20 Aligned_cols=45 Identities=40% Similarity=0.558 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchh
Q 030373 78 RFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLF 132 (178)
Q Consensus 78 Rf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~ 132 (178)
-..||+.++.+|+.+++.+ +.. +.+.+.+|||+||||.......+
T Consensus 95 ~~~~s~~~a~~a~~la~~~--------~~~--~~~~a~~~gLL~~iG~l~l~~~~ 139 (196)
T PF08668_consen 95 FWRHSLAAAAIARRLAREL--------GFD--DPDEAYLAGLLHDIGKLLLLSLF 139 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------TCC--HHHHHHHHHHHTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHc--------CCC--CHHHHHHHHHHHHHhHHHHHHHh
Confidence 4789999999999999873 222 24788999999999977655443
No 55
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=92.91 E-value=0.12 Score=45.45 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhh--hc---cCCC-CccHHHHH
Q 030373 79 FEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLP--RV---VSGC-KWSHEQMS 152 (178)
Q Consensus 79 f~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~--~~---~~~~-~~~HE~~s 152 (178)
.+++..++.+|..+++.+ + ..+.....+|||||++|-.+|.+.+...... .. .+++ .--+|..+
T Consensus 118 w~~a~~~A~ia~~La~~~--------g--~~~~~~~y~~gLLh~lG~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 187 (289)
T COG1639 118 WDTAIETAMIAEGLARAL--------G--RADSDEAYTAGLLHNLGILVLLTDFPDHCELLDYLLALNNDELLALDEELG 187 (289)
T ss_pred HHHHHHHHHHHHHHHHHh--------C--cccHHHHHHHHHHHHccHHHHHHHhHHHHHHHHHHHHhccCcccchHHHhc
Confidence 567788888888887763 2 3456778999999999999988888764311 00 0000 01122221
Q ss_pred ----HHHHHHHHHhCCCCCChhhhhhcc
Q 030373 153 ----LKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 153 ----~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
..|-.++++.++|+ .+.++.||
T Consensus 188 i~~h~~Iga~llr~W~fp--~~l~e~i~ 213 (289)
T COG1639 188 IFGHASIGAYLLRRWNFP--DDLIEAIR 213 (289)
T ss_pred cccchHHHHHHHHHcCCC--HHHHHHHH
Confidence 23345667788887 66666665
No 56
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=91.94 E-value=0.37 Score=42.88 Aligned_cols=79 Identities=23% Similarity=0.150 Sum_probs=46.0
Q ss_pred eecChhHHHHhcCHHHHhHHhHhhhcccceecCCCCcc----ccchHHHHHHHHHHHHHHHHHccCccCCCCHHH-----
Q 030373 40 IYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHS----RFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFD----- 110 (178)
Q Consensus 40 i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~ht----Rf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d----- 110 (178)
..+++...+-.--|...|+...-|+-+++-- ..|+ =+.|+|.|+..|-++.+...- + .+-++++
T Consensus 28 ~~l~~~~f~~~yl~~l~r~A~~vQ~LPASe~---hhha~~GGll~h~LEva~~Alrl~~~~~l--p--~~a~pEe~~~q~ 100 (327)
T PF07514_consen 28 SGLSREQFERLYLPPLERYAEFVQLLPASES---HHHAGPGGLLDHTLEVAAYALRLRQGYML--P--PGATPEEQAAQE 100 (327)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcCCCCcHHHHHHHHHHHHHHHhcCeec--C--CCCChhhHHHHH
Confidence 3344433344444556666666665443221 1222 389999999999988754210 1 1122222
Q ss_pred ---HHHHHHHHHhhhcCC
Q 030373 111 ---IQTVKLAGLLHDVGH 125 (178)
Q Consensus 111 ---~~~v~iAALlHDiGh 125 (178)
.-++-+||||||||.
T Consensus 101 ~~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 101 PAWRYAVFYAALLHDLGK 118 (327)
T ss_pred hhhHHHHHHHHHHhccCc
Confidence 357899999999997
No 57
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=89.81 E-value=0.47 Score=48.43 Aligned_cols=49 Identities=33% Similarity=0.560 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhcCCCCCCchhhhhhhhhccC---CCCccHHHHHHHHHHHHHH
Q 030373 111 IQTVKLAGLLHDVGHGPFSHLFEREFLPRVVS---GCKWSHEQMSLKMVDHIVD 161 (178)
Q Consensus 111 ~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~---~~~~~HE~~s~~ii~~il~ 161 (178)
..+..+|||+||+|.. |-.|...+.+...+ ..+..||=.|.++++.+..
T Consensus 113 ~lLa~~AgL~HD~GKA--~~~FQ~kL~~~~~~~~~~d~~RHEWvSlrLfqafv~ 164 (1110)
T TIGR02562 113 SLLAGLAGLLHDIGKA--SVHFQNKLSPEMNGPKIADDYRHEWVSLRLFQAFVE 164 (1110)
T ss_pred HHHHHHHHHhhccccc--hHHHHHhhcCccCCCccCCCccHHHHHHHHHHHHhC
Confidence 4578999999999986 33344333221001 2468999999999998874
No 58
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=89.69 E-value=0.32 Score=42.81 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=35.2
Q ss_pred cceecCCC--Cccc-----cchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCC
Q 030373 67 THLVYPGA--VHSR-----FEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 67 ~~~vyp~a--~htR-----f~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~ 126 (178)
.++-||++ .|.+ -.|++-|+.++..+++.. ...++++++++++|||+|++
T Consensus 124 ~f~~~paa~~~Hh~~~~gLa~ht~~~~~l~~~~~~~y----------~~~n~dli~Ag~ilHdigK~ 180 (287)
T COG3481 124 VFYKYPAATQNHHAFEGGLAEHTLTVLELYKRISEIY----------PTVNRELIYAGAILHDIGKV 180 (287)
T ss_pred HHhccchhhhhhhhhhcchHHHHHHHHHHHHHHHhhc----------ccccHHHHHHHHHHhccccc
Confidence 45567876 3433 357888888888887641 12347899999999999974
No 59
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=89.38 E-value=0.63 Score=39.75 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=39.8
Q ss_pred CCCC-HHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCC
Q 030373 104 LGID-NFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHI 165 (178)
Q Consensus 104 ~~i~-~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~ 165 (178)
.+++ +...+.+.+|-.+||||.. +|. |...........||-.|+-+....+++++-
T Consensus 43 ~~ld~e~v~~~vk~AiilHDiGKa-----~~~-yQ~~~~~~~~~~HE~~Say~~~~~~e~~~d 99 (230)
T COG2254 43 IKLDIEKVEELVKLAIILHDIGKA-----SEA-YQKGRGNDCFYYHELVSAYFAYEVLEPLGD 99 (230)
T ss_pred hhhhHHHHHHHHHHeeEEeechhh-----HHH-HHHhcccCcccchhhHHHHHHHHHHhhccc
Confidence 3445 3456899999999999986 233 444332222567999999999999988763
No 60
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=88.21 E-value=0.86 Score=36.39 Aligned_cols=39 Identities=31% Similarity=0.322 Sum_probs=28.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
|=-+||..|+-+|..++..... ..|..-+...||+||++
T Consensus 22 sVAeHS~~vA~~a~~la~~~~~---------~~d~~k~~~~aL~HDl~ 60 (165)
T PF13023_consen 22 SVAEHSWRVALIALLLAEEAGP---------DLDIEKVVKMALFHDLP 60 (165)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH----------HC-HHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHhHHhcc---------cCCHHHHHHHHhhccch
Confidence 4489999999999999877531 12344555666999999
No 61
>PRK03826 5'-nucleotidase; Provisional
Probab=86.98 E-value=2 Score=35.57 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=40.2
Q ss_pred HHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 54 QFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 54 ~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
...|||.|+--|. +......|=-+||..|+-+|..++..-.+..+ .++ |..-+...||+||++
T Consensus 8 ~~~rLK~i~Rw~~---~~~~~~EsVAeHs~~vAliA~~La~i~~~~~~--~~v---d~~rv~~~aL~HDl~ 70 (195)
T PRK03826 8 HLSRLKLINRWPL---MRNVRTENVSEHSLQVAMVAHALAVIKNRKFG--GNL---NAERIALLAMYHDAS 70 (195)
T ss_pred HHHhhccccccCC---CCCCCCCccHHHHHHHHHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHhcchH
Confidence 3467777766554 22223456689999999999987743111111 123 356677889999998
No 62
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=85.55 E-value=1.9 Score=36.56 Aligned_cols=45 Identities=24% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 74 AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 74 a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
-.||=-+||.-|+.+|..++. +++..+ . ..|.+.+...||+||+.
T Consensus 26 ~~~nVA~HSf~Va~iA~~Lg~-iee~~G--~---~vd~~~lyekAL~HD~~ 70 (215)
T PF12917_consen 26 QEHNVAEHSFKVAMIAQFLGD-IEEQFG--N---EVDWKELYEKALNHDYP 70 (215)
T ss_dssp S--BHHHHHHHHHHHHHHHHH-HHHHTT---------HHHHHHHHHHTTGG
T ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHhC--C---ccCHHHHHHHHhccccH
Confidence 478889999999999999985 444322 1 23466888899999998
No 63
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=85.40 E-value=1.1 Score=37.06 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC
Q 030373 78 RFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH 125 (178)
Q Consensus 78 Rf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh 125 (178)
-..|||.|..+++.+++.+. +|.+.-.++|||||+-.
T Consensus 48 L~kHcla~eavMr~lARe~g-----------EDEEkw~~~GlLHD~DY 84 (212)
T COG2316 48 LQKHCLAVEAVMRWLAREWG-----------EDEEKWAVTGLLHDFDY 84 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhC-----------ccHHHHHHHhhhhhccH
Confidence 36799999999999998753 23556789999999984
No 64
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=80.60 E-value=5.5 Score=37.52 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCC
Q 030373 79 FEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGH 125 (178)
Q Consensus 79 f~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh 125 (178)
.+|+--|...|..+...+....+ ...++.+.. +..||+|||||.
T Consensus 328 ~~~~~~v~~~a~~l~~~~~~~~~--~~~~~~~~~-l~~Aa~Lh~iG~ 371 (492)
T COG0248 328 LAQAKRVAKLALELFDQLLALLK--IDEEAEERL-LEAAAMLHEIGL 371 (492)
T ss_pred HHhHhhHHHHHHHHHHHhhhccc--cCCChHHHH-HHHHHHHHHhcc
Confidence 46677888888888877653211 234455555 899999999995
No 65
>PRK09694 helicase Cas3; Provisional
Probab=80.53 E-value=4.1 Score=40.97 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred CccccchHHHHHHHHHHHHHH---HHHccCccCCCCHHH-HHHHHHHHHhhhcCCCCCCchhhhhhh---hhcc------
Q 030373 75 VHSRFEHSLGVYWLAGAAIQK---LKQNQGLELGIDNFD-IQTVKLAGLLHDVGHGPFSHLFEREFL---PRVV------ 141 (178)
Q Consensus 75 ~htRf~HSLGV~~la~~i~~~---l~~~~~~~~~i~~~d-~~~v~iAALlHDiGh~PfsH~~E~~~~---~~~~------ 141 (178)
-|-=.-|++.|+.+|..+.+. +++.-...++.+.+. ...+..-|-+||||+ |+..|..... ..+.
T Consensus 24 ~hpL~~H~lDvAava~~l~~~~~~~~~~l~~~lg~~~~~~~~~~~fl~~lHDiGK--~tp~FQ~~~~~~~~~l~~~g~~~ 101 (878)
T PRK09694 24 YHLLPYHCLDVAAVADCWWDQSPVLRSQFSANEMLSKQQVRAWLLFFVALHDIGK--FDIRFQYKAPEIWLKLNPAGPSI 101 (878)
T ss_pred cChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHcccccc--CCHHHHhhhHHHHHHHHhccCCC
Confidence 366688999999999988753 111001124555444 445555677999998 3556664321 0110
Q ss_pred ------CCCCccHHHHHHHHHHHHHHhCCC
Q 030373 142 ------SGCKWSHEQMSLKMVDHIVDEHHI 165 (178)
Q Consensus 142 ------~~~~~~HE~~s~~ii~~il~~~g~ 165 (178)
....+.|...|..+++.+|.++|.
T Consensus 102 ~~~~~~~~~~~~H~~~g~~~l~~~l~~~~~ 131 (878)
T PRK09694 102 SGPSTQMCRKYDHGAAGLLWFRQDFRSNQA 131 (878)
T ss_pred CCccccccccCCchHHHHHHHHHHHHhccc
Confidence 111377999999999999988775
No 66
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=76.57 E-value=2 Score=33.43 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=22.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 77 SRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 77 tRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
.-+.|.++|+.+...+. .+ ..+.+||||||+=
T Consensus 19 py~~H~~~va~~l~~~~------------~d----~~~i~aalLHD~i 50 (153)
T PF13328_consen 19 PYISHPLEVAEILAELG------------LD----EETIAAALLHDVI 50 (153)
T ss_dssp BTTHHHHHHHHHHHTS-------------------HHHHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHHHcC------------CC----HHHHhhheeecHH
Confidence 34899999998764442 22 2478999999963
No 67
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=67.43 E-value=4 Score=35.36 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=23.3
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCC
Q 030373 72 PGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 72 p~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~ 126 (178)
|...-+...|++-+|..+++-- | +..=++++||+||+|..
T Consensus 57 PD~d~~~i~H~lQTAEaiR~d~-------~--------~~dW~~LtGLiHDLGKv 96 (253)
T PF05153_consen 57 PDTDLPQIQHALQTAEAIRRDH-------P--------DPDWMQLTGLIHDLGKV 96 (253)
T ss_dssp TT--S-HHHHHHHHHHHHHHHS-------T--------T-HHHHHHHHHTTGGGH
T ss_pred CCCchhHHHHHHHHHHHHHHhC-------C--------Ccchhhheehhccchhh
Confidence 4444556677776665544321 1 13567999999999963
No 68
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=61.41 E-value=7.8 Score=35.23 Aligned_cols=29 Identities=38% Similarity=0.611 Sum_probs=20.7
Q ss_pred hcCCCCCCchhhhhhhhhccCCCCccH-HHHHHHHH
Q 030373 122 DVGHGPFSHLFEREFLPRVVSGCKWSH-EQMSLKMV 156 (178)
Q Consensus 122 DiGh~PfsH~~E~~~~~~~~~~~~~~H-E~~s~~ii 156 (178)
+.||+ |+|++|.... ...|.| |..+.-|+
T Consensus 242 N~GHT-~GHAiE~~~~-----y~~~~HGeAVaiGmv 271 (360)
T COG0337 242 NLGHT-FGHAIEALTG-----YGKWLHGEAVAIGMV 271 (360)
T ss_pred hcchH-HHHHHHHHhC-----CCccchHHHHHHHHH
Confidence 78998 8999998642 234888 77776554
No 69
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=56.53 E-value=3.6 Score=39.88 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=10.5
Q ss_pred HHHHHhhhcCCC
Q 030373 115 KLAGLLHDVGHG 126 (178)
Q Consensus 115 ~iAALlHDiGh~ 126 (178)
.+||||||||..
T Consensus 2 ~~~aLLHDIGK~ 13 (648)
T TIGR02578 2 AVAALLHDIGKV 13 (648)
T ss_pred chhhhhhccchh
Confidence 579999999975
No 70
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=56.02 E-value=19 Score=27.46 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHhHhhhcccceecCCCCccccchHHHHHHHHHHHH
Q 030373 58 LRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAI 93 (178)
Q Consensus 58 Lr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~ 93 (178)
|+.+.+.|....+.=||.-.|++|+++..++..++.
T Consensus 77 l~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~ 112 (123)
T PF04263_consen 77 LEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYK 112 (123)
T ss_dssp HHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence 555577788877778999999999999999988765
No 71
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=49.11 E-value=67 Score=26.67 Aligned_cols=55 Identities=24% Similarity=0.397 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcCCCCCCchhhhhhhhhc-cC-C----CCc--cHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 111 IQTVKLAGLLHDVGHGPFSHLFEREFLPRV-VS-G----CKW--SHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 111 ~~~v~iAALlHDiGh~PfsH~~E~~~~~~~-~~-~----~~~--~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
.+.+++||.+++|+.+ | .|+- .+ + -.| .+-...+.++..|+.+.|++ +++|++|.
T Consensus 48 se~LqlAaR~QHi~RW------~---~PR~~yP~~r~GYl~WR~~l~~~hA~~~~~im~~~Gy~--~~~i~rV~ 110 (185)
T PF13875_consen 48 SEALQLAARAQHIERW------E---IPRSSYPEGRAGYLQWRRALKKRHAAIAAEIMREAGYD--EEEIDRVA 110 (185)
T ss_pred CHHHHHHHHHHHHHHh------c---CchhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
Confidence 4689999999999975 2 1110 00 0 013 35566778889999999988 99999874
No 72
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=43.59 E-value=21 Score=29.54 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcCC
Q 030373 112 QTVKLAGLLHDVGH 125 (178)
Q Consensus 112 ~~v~iAALlHDiGh 125 (178)
.-+-++||+||+|.
T Consensus 116 dWlHLtaLiHDLGK 129 (204)
T KOG1573|consen 116 DWLHLTALIHDLGK 129 (204)
T ss_pred cHHHHHHHHHHHHH
Confidence 34789999999996
No 73
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=41.63 E-value=16 Score=36.45 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhcCCC
Q 030373 110 DIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 110 d~~~v~iAALlHDiGh~ 126 (178)
+...+.+||||||+|..
T Consensus 4 ~~~~~~i~aLLHD~gk~ 20 (799)
T COG1353 4 EFEELKIAALLHDIGKF 20 (799)
T ss_pred HHHHHHHHHHhcCCchh
Confidence 45678999999999943
No 74
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=39.44 E-value=42 Score=27.41 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHhHhhhcccceecCCCCccccchHHHHHHHHHHHHH
Q 030373 58 LRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQ 94 (178)
Q Consensus 58 Lr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~ 94 (178)
|+...+.|....+.=||.-.|++|+++...+..+..+
T Consensus 83 l~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~~~ 119 (208)
T cd07995 83 LKLALERGADEIVILGATGGRLDHTLANLNLLLKYAK 119 (208)
T ss_pred HHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHHHh
Confidence 6777777777777789999999999999999888753
No 75
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=39.29 E-value=47 Score=29.66 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=18.5
Q ss_pred hhhcCCCCCCchhhhhhhhhccCCCCccH-HHHHHHH
Q 030373 120 LHDVGHGPFSHLFEREFLPRVVSGCKWSH-EQMSLKM 155 (178)
Q Consensus 120 lHDiGh~PfsH~~E~~~~~~~~~~~~~~H-E~~s~~i 155 (178)
+.+.||. |+|++|... ...+.| |..+.-|
T Consensus 231 ~Ln~GHT-~ghalE~~~------~~~~~HGeaVa~Gm 260 (355)
T cd08197 231 ILEYGHT-VGHAVELLS------QGGLTHGEAVAIGM 260 (355)
T ss_pred hhhCccc-ccHHHHhhc------CCCcChHHHHHHHH
Confidence 3688998 899999743 124556 5555433
No 76
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.17 E-value=1.4e+02 Score=24.88 Aligned_cols=62 Identities=21% Similarity=0.121 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHH
Q 030373 76 HSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKM 155 (178)
Q Consensus 76 htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~i 155 (178)
|| ..|..-|.......-... .|...|.+|+|.||+=.- ....+.|..|...
T Consensus 40 H~-l~HI~a~L~~~~~~r~la------------~dp~~VElA~WfHD~iYD----------------tqaqDNEa~Saa~ 90 (208)
T COG4339 40 HT-LKHISAVLQTIQTLRTLA------------QDPPGVELAAWFHDVIYD----------------TQAQDNEAKSAAY 90 (208)
T ss_pred hh-HHHHHHHHHHHHHHHHHh------------cCCchhHHHHHHHHHHhh----------------hhccccHHHhHHH
Confidence 44 556666665555544321 134589999999998631 1245778889888
Q ss_pred HHHHHHhCCCC
Q 030373 156 VDHIVDEHHID 166 (178)
Q Consensus 156 i~~il~~~g~~ 166 (178)
...-|+..|++
T Consensus 91 a~~~L~s~g~p 101 (208)
T COG4339 91 AGAALQSLGIP 101 (208)
T ss_pred HHHHHHhCCCh
Confidence 88888877775
No 77
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=35.93 E-value=47 Score=27.18 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHhHhhhcccceecCCCCccccchHHHHHHHHHHHH
Q 030373 58 LRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAI 93 (178)
Q Consensus 58 Lr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~ 93 (178)
|+...+.|....+.=||.-.|++|+++..++..+..
T Consensus 79 l~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L~~~~ 114 (203)
T TIGR01378 79 LKYALERGADEITILGATGGRLDHTLANLNLLLEYA 114 (203)
T ss_pred HHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 455556677666667999999999999999887764
No 78
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=34.66 E-value=46 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=18.5
Q ss_pred hhhcCCCCCCchhhhhhhhhccCCCCccH-HHHHHHH
Q 030373 120 LHDVGHGPFSHLFEREFLPRVVSGCKWSH-EQMSLKM 155 (178)
Q Consensus 120 lHDiGh~PfsH~~E~~~~~~~~~~~~~~H-E~~s~~i 155 (178)
..+.||. |+|++|.... ..+.| |..+.-|
T Consensus 248 ~Ln~GHT-~gHAlE~~~~------~~~~HGeAVaiGm 277 (369)
T cd08198 248 PLDFGHW-SAHKLEQLSN------YALRHGEAVAIGI 277 (369)
T ss_pred cccccch-hHHHHHhcCC------CCCChHHHHHHHH
Confidence 4577996 9999997531 13556 6555444
No 79
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=33.44 E-value=35 Score=29.38 Aligned_cols=29 Identities=38% Similarity=0.627 Sum_probs=18.2
Q ss_pred hhhcCCCCCCchhhhhhhhhccCCCCccH-HHHHHHH
Q 030373 120 LHDVGHGPFSHLFEREFLPRVVSGCKWSH-EQMSLKM 155 (178)
Q Consensus 120 lHDiGh~PfsH~~E~~~~~~~~~~~~~~H-E~~s~~i 155 (178)
+-+.||. |+|++|... +..+.| |..+.-|
T Consensus 177 ~Ln~GHT-~gHAlE~~~------~~~i~HGeAVa~Gm 206 (260)
T PF01761_consen 177 ILNFGHT-FGHALESLS------GYKISHGEAVAIGM 206 (260)
T ss_dssp GGGTTHH-HHHHHHHHC------TTTS-HHHHHHHHH
T ss_pred Hhcccch-hHHHHHHhc------CCCCchHHHHHHHH
Confidence 4578887 889999853 224566 5555444
No 80
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=33.05 E-value=7.2 Score=30.14 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=9.7
Q ss_pred HHHHHhhhcCCC
Q 030373 115 KLAGLLHDVGHG 126 (178)
Q Consensus 115 ~iAALlHDiGh~ 126 (178)
..+-++|.|||.
T Consensus 104 ~~~~~~HEiGHa 115 (156)
T cd04279 104 LQAIALHELGHA 115 (156)
T ss_pred HHHHHHHHhhhh
Confidence 457789999994
No 81
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=32.30 E-value=25 Score=34.38 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 79 FEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 79 f~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
+.|.+.|+.+...+ +.+ . ...+||||||+=
T Consensus 21 i~Hpl~VA~iL~~~------------~~D---~-~~i~AaLLHDvv 50 (683)
T TIGR00691 21 IIHPLAVALILAEL------------GMD---E-ETVCAALLHDVI 50 (683)
T ss_pred HHHHHHHHHHHHHh------------CCC---H-HHHHHHhccchH
Confidence 78999999865432 233 1 358899999985
No 82
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=32.08 E-value=46 Score=20.95 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=22.4
Q ss_pred cCCCCcceecChhHHHHhcCHHHHhHHhHhhhc
Q 030373 33 HDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLG 65 (178)
Q Consensus 33 ~Dpv~g~i~~~~~~~~IIdt~~fqRLr~I~Qlg 65 (178)
..-.-|.| +..+.+|.+++.|+++|+....+
T Consensus 25 ~~~~~Gni--~~~l~eiw~s~~~~~~r~~~~~~ 55 (64)
T PF13186_consen 25 PEFKIGNI--EDSLEEIWNSPKFREFRKRHKKN 55 (64)
T ss_pred CCeEEeec--CCCHHHHHCCHHHHHHHHHHhCC
Confidence 33344666 45688999999999998776544
No 83
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=31.73 E-value=58 Score=29.06 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=10.8
Q ss_pred hcCCCCCCchhhhh
Q 030373 122 DVGHGPFSHLFERE 135 (178)
Q Consensus 122 DiGh~PfsH~~E~~ 135 (178)
+.||. |||++|..
T Consensus 224 n~GHt-~gHAlE~~ 236 (346)
T cd08196 224 NYGHT-FGHALESA 236 (346)
T ss_pred hccch-hhHHHHcc
Confidence 46998 89999975
No 84
>PRK12404 stage V sporulation protein AD; Provisional
Probab=31.24 E-value=50 Score=29.85 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.8
Q ss_pred CCCCCCchhhhhhhhhccCCCCccH--HHHHHHHHHHHHHhCCCCCChhhhhhccc
Q 030373 124 GHGPFSHLFEREFLPRVVSGCKWSH--EQMSLKMVDHIVDEHHIDLDFEMIKKVKV 177 (178)
Q Consensus 124 Gh~PfsH~~E~~~~~~~~~~~~~~H--E~~s~~ii~~il~~~g~~~~~~~I~~I~~ 177 (178)
|.+|+++.|+.++.+.......|+- .++..+-++..|++-|++ +++|+.+.+
T Consensus 28 ~~Gpl~~~FD~~~~d~~~g~~swEkAE~~L~~EA~~~AL~kAGI~--~~DID~i~v 81 (334)
T PRK12404 28 AKGPLAEDFDLLHEDLWLGQDSYEKAERKLLEEACSRAIEKAKLR--KEDIQFFLA 81 (334)
T ss_pred cCCCChhhCCeeecccccCCcchHHHHHHHHHHHHHHHHHHcCCC--HHHCCEEEE
Confidence 5789998888765443333333432 345556678889999977 999988754
No 85
>PRK08304 stage V sporulation protein AD; Validated
Probab=30.59 E-value=43 Score=30.27 Aligned_cols=52 Identities=13% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCCCCCchhhhhhhhhccCCCCcc--HHHHHHHHHHHHHHhCCCCCChhhhhhccc
Q 030373 124 GHGPFSHLFEREFLPRVVSGCKWS--HEQMSLKMVDHIVDEHHIDLDFEMIKKVKV 177 (178)
Q Consensus 124 Gh~PfsH~~E~~~~~~~~~~~~~~--HE~~s~~ii~~il~~~g~~~~~~~I~~I~~ 177 (178)
|.||+++.|+.++.........|+ -.++..+-++..|++-|++ .++|+.|.+
T Consensus 30 ~~gpl~~~fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~--~~DID~lI~ 83 (337)
T PRK08304 30 GEGPLGKYFDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLK--KSDIDYLLA 83 (337)
T ss_pred cCCCChhhCCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCC--HHHCCEEEE
Confidence 678999988876543332222232 3456777788999999976 899988754
No 86
>TIGR02682 cas_csx11 CRISPR-associated protein, Csx11 family. Members of this uncommon, sporadically distributed protein family are large (900 amino acids) and strictly associated, so far, with CRISPR-associated (Cas) gene clusters. Nearby Cas genes always include members of the RAMP superfamily and the six-gene CRISPR-associated RAMP module. Species in which it is found, so far, include three archaea (Methanosarcina mazei, M. barkeri and Methanobacterium thermoautotrophicum) and two bacteria (Thermodesulfovibrio yellowstonii DSM 11347 and Sulfurihydrogenibium azorense).
Probab=29.62 E-value=61 Score=33.08 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 030373 109 FDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 109 ~d~~~v~iAALlHDiGh~ 126 (178)
.+..++.++|||||+|..
T Consensus 11 d~ILlAEI~A~LHd~gK~ 28 (918)
T TIGR02682 11 DEILLAEIGAYLHLWGKL 28 (918)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457789999999999974
No 87
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=27.68 E-value=59 Score=29.30 Aligned_cols=52 Identities=12% Similarity=0.310 Sum_probs=35.8
Q ss_pred CCCCCCchhhhhhhhhccCCCCc--cHHHHHHHHHHHHHHhCCCCCChhhhhhccc
Q 030373 124 GHGPFSHLFEREFLPRVVSGCKW--SHEQMSLKMVDHIVDEHHIDLDFEMIKKVKV 177 (178)
Q Consensus 124 Gh~PfsH~~E~~~~~~~~~~~~~--~HE~~s~~ii~~il~~~g~~~~~~~I~~I~~ 177 (178)
|.+|+++.|+.++.........| .-.++..+-++..|++-|++ +++|+.|.+
T Consensus 24 ~~gpl~~~fd~~~~d~~~g~ks~EkAe~eLa~eAa~~ALekAGL~--~~DID~IIv 77 (327)
T TIGR02845 24 GEGPLGDYFDKIYDDLYCGEDSWEKAERKLMEDAVNLALKKANLK--KDDVDFFLA 77 (327)
T ss_pred ccCCChhhCCEEEeccccCCcCcchhHHHHHHHHHHHHHHHcCCC--HHHCCEEEE
Confidence 57898888887654333333333 33557777788999998876 999988754
No 88
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=26.99 E-value=81 Score=29.83 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.0
Q ss_pred hhcCCCCCCchhhhh
Q 030373 121 HDVGHGPFSHLFERE 135 (178)
Q Consensus 121 HDiGh~PfsH~~E~~ 135 (178)
.+.||. |+|++|..
T Consensus 426 Ln~GHT-~gHaiE~~ 439 (542)
T PRK14021 426 LNYGHT-LGHAIEKL 439 (542)
T ss_pred Hhccch-hhHHHHcc
Confidence 489998 89999975
No 89
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=26.80 E-value=90 Score=27.40 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.9
Q ss_pred hhcCCCCCCchhhhhh
Q 030373 121 HDVGHGPFSHLFEREF 136 (178)
Q Consensus 121 HDiGh~PfsH~~E~~~ 136 (178)
-+.||. |||++|...
T Consensus 233 ln~GHt-~gHalE~~~ 247 (345)
T cd08195 233 LNFGHT-FGHAIEALT 247 (345)
T ss_pred ecCccc-chHHHHhhc
Confidence 457998 899999754
No 90
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=24.91 E-value=64 Score=22.64 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.8
Q ss_pred hHHHHhcCHHHHh-HHhHh
Q 030373 45 LALKFIDTEQFQR-LRDLK 62 (178)
Q Consensus 45 ~~~~IIdt~~fqR-Lr~I~ 62 (178)
...+|++||.|.| .|+|.
T Consensus 4 Ly~kLl~SpgFhrfVR~Ih 22 (68)
T PF10906_consen 4 LYRKLLDSPGFHRFVRRIH 22 (68)
T ss_pred HHHHHHcChhHHHHHHHHH
Confidence 3578999999999 55543
No 91
>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]
Probab=24.67 E-value=1.1e+02 Score=29.30 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCCC
Q 030373 74 AVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGP 127 (178)
Q Consensus 74 a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~P 127 (178)
+.|+ -+|.-.|.+...-++..=+- .-.+++.|.....+||-.||+.|+-
T Consensus 502 aYHN-aTHAADVLhATaFFL~kerV----~g~ldeld~VAALiAAaVHDlDHPG 550 (775)
T KOG1229|consen 502 AYHN-ATHAADVLHATAFFLDKERV----AGHLDELDAVAALIAAAVHDLDHPG 550 (775)
T ss_pred cccc-cchHHHHHHHHHHhcCCchh----hcccchHHHHHHHHHHHHhccCCCC
Confidence 3444 56666777765555432110 0235667778889999999999974
No 92
>COG4086 Predicted secreted protein [Function unknown]
Probab=23.78 E-value=1.4e+02 Score=26.64 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.4
Q ss_pred CccHHHHHHHHHHHHHHhCCCCCChhhhhhcc
Q 030373 145 KWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176 (178)
Q Consensus 145 ~~~HE~~s~~ii~~il~~~g~~~~~~~I~~I~ 176 (178)
+..-++-..++++...+.++++++..++++|.
T Consensus 208 ~~~~~~dirkvv~dv~~~ynvnltd~qvn~i~ 239 (299)
T COG4086 208 KVDDPADIRKVVDDVANNYNVNLTDTQVNQIV 239 (299)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34677888999999999999999999998763
No 93
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.54 E-value=83 Score=29.47 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=25.3
Q ss_pred hhhcCCCCCCchhhhhhhhhccCCCCccH-HHHHHHHH--HHHHHhCCCCCChhhhhh
Q 030373 120 LHDVGHGPFSHLFEREFLPRVVSGCKWSH-EQMSLKMV--DHIVDEHHIDLDFEMIKK 174 (178)
Q Consensus 120 lHDiGh~PfsH~~E~~~~~~~~~~~~~~H-E~~s~~ii--~~il~~~g~~~~~~~I~~ 174 (178)
+.+.||. |+|++|..+ +..| |..+.-|+ -++-.+.|+ +++++.++
T Consensus 382 ~LN~GHT-igHalE~~~--------~i~HG~AVa~gm~~~~~~s~~~g~-~~~~~~~~ 429 (488)
T PRK13951 382 ALNLGHT-LGHVYEMLE--------GVPHGIAVAWGIEKETMYLYRKGI-VPKETMRW 429 (488)
T ss_pred HHhccch-HHHHHHhcc--------CCccHHHHHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3558887 889999753 2456 66665554 233344443 23444443
No 94
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=23.24 E-value=39 Score=33.29 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcC
Q 030373 79 FEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVG 124 (178)
Q Consensus 79 f~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiG 124 (178)
+.|.+.|+.+...+ +++ . ...+||||||+-
T Consensus 46 i~Hpl~VA~iLa~l------------~~D---~-~ti~AaLLHDvv 75 (702)
T PRK11092 46 ITHPVAVACILAEM------------RLD---Y-ETLMAALLHDVI 75 (702)
T ss_pred HHHHHHHHHHHHHc------------CCC---H-HHHHHhcccchh
Confidence 67999988876432 233 2 247999999995
No 95
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=22.37 E-value=2.9e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=19.5
Q ss_pred hHHHHhcCHHHHh-HHhHhhhcccceecCCCCcc
Q 030373 45 LALKFIDTEQFQR-LRDLKQLGVTHLVYPGAVHS 77 (178)
Q Consensus 45 ~~~~IIdt~~fqR-Lr~I~Qlg~~~~vyp~a~ht 77 (178)
.+.+++.+|...+ |+.+.++|.-.. +|+-..+
T Consensus 199 El~kll~~~~~~~~l~~l~~~gll~~-~p~l~~~ 231 (394)
T PRK13299 199 EFEKLLLGPFWRKGLKLLIETGLYNY-LPGLKGK 231 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHCChHHh-Ccccccc
Confidence 3556666665444 666667777666 7775443
No 96
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.05 E-value=1e+02 Score=23.02 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=22.2
Q ss_pred eecCh--hHHHHhcCHHHHhHHhHhhhcc
Q 030373 40 IYLDP--LALKFIDTEQFQRLRDLKQLGV 66 (178)
Q Consensus 40 i~~~~--~~~~IIdt~~fqRLr~I~Qlg~ 66 (178)
|+|++ -....-+||+||....+||-..
T Consensus 58 iEFps~~~ar~~y~SpeYq~a~~~Rq~~a 86 (96)
T COG5470 58 IEFPSLEAARDCYNSPEYQAAAAIRQAAA 86 (96)
T ss_pred EEcCCHHHHHHHhcCHHHHHHHHHHhhcc
Confidence 46764 5788999999999999999654
No 97
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=22.01 E-value=3.3e+02 Score=23.80 Aligned_cols=13 Identities=0% Similarity=-0.028 Sum_probs=9.6
Q ss_pred HHHHHHhCCCCCC
Q 030373 156 VDHIVDEHHIDLD 168 (178)
Q Consensus 156 i~~il~~~g~~~~ 168 (178)
++.+++++|++.+
T Consensus 282 i~~ll~~~glp~~ 294 (332)
T cd08549 282 IKKFLSKKGSLNR 294 (332)
T ss_pred HHHHHHHcCCCCC
Confidence 4577889998744
No 98
>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion]
Probab=21.29 E-value=79 Score=29.09 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhcCC-CCCCchh
Q 030373 111 IQTVKLAGLLHDVGH-GPFSHLF 132 (178)
Q Consensus 111 ~~~v~iAALlHDiGh-~PfsH~~ 132 (178)
..++.+|.++||+|| .+|.|++
T Consensus 111 SHLl~l~~~~~~vg~~t~~~~~~ 133 (382)
T COG3261 111 SHLLNLGLLCHDVGFETGFMQFF 133 (382)
T ss_pred HHHHHHhhhhhhccccHHHHHHH
Confidence 457899999999999 6666655
No 99
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=20.39 E-value=63 Score=25.23 Aligned_cols=17 Identities=53% Similarity=0.964 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhcCCCCC
Q 030373 112 QTVKLAGLLHDVGHGPF 128 (178)
Q Consensus 112 ~~v~iAALlHDiGh~Pf 128 (178)
....++.+.||.+|.+|
T Consensus 16 ~~~~~~~~~H~~~H~~~ 32 (257)
T PF00487_consen 16 SFARLFGLAHDAGHGAF 32 (257)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 35688999999999965
No 100
>KOG3688 consensus Cyclic GMP phosphodiesterase [Signal transduction mechanisms]
Probab=20.13 E-value=58 Score=30.87 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=30.9
Q ss_pred cceecCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCHHHHHHHHHHHHhhhcCCC
Q 030373 67 THLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHG 126 (178)
Q Consensus 67 ~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~~d~~~v~iAALlHDiGh~ 126 (178)
.|.-|-+..|+ .-|.-.|.+-.--+..+ .+.-..+++-+..++..||++||--|+
T Consensus 210 gy~k~knPyhn-~~haadVtqt~H~~l~~----Tgim~~Lt~LEllA~~faAaiHDYeHt 264 (554)
T KOG3688|consen 210 GYSKYKNPYHN-LIHAADVTQTVHYHLLH----TGIMNWLTELELLALLFAAAIHDYEHT 264 (554)
T ss_pred cccCCCCCccc-hhhhhhcccCchHHhhh----hhHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 33444445555 45555554443333211 011123566677889999999999885
Done!