Query 030376
Match_columns 178
No_of_seqs 51 out of 53
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 20:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9z_A WHY2 protein; stwhy2, s 100.0 6.3E-61 2.2E-65 394.2 14.1 127 50-176 2-130 (178)
2 1l3a_A PBF-2, P24: plant trans 100.0 6.5E-57 2.2E-61 381.4 16.4 126 52-177 31-158 (227)
3 1aoc_A Coagulogen; coagulation 89.4 0.25 8.4E-06 40.0 3.3 53 59-118 77-129 (175)
4 1vq8_1 50S ribosomal protein L 32.8 14 0.00047 25.4 0.9 13 103-115 42-54 (57)
5 3j21_e 50S ribosomal protein L 25.2 22 0.00075 24.7 0.9 13 103-115 42-54 (62)
6 3iz5_l 60S ribosomal protein L 18.9 35 0.0012 25.5 0.9 13 103-115 40-52 (94)
7 3pw3_A Aminopeptidase C; bleom 16.2 1.4E+02 0.0048 26.5 4.3 57 107-172 168-227 (383)
8 2zkr_2 60S ribosomal protein L 15.3 52 0.0018 24.6 1.1 13 103-115 40-52 (97)
9 3bu2_A Putative tRNA-binding p 12.3 2.9E+02 0.01 22.4 4.8 50 111-165 55-107 (199)
10 4a18_A RPL37, ribosomal protei 10.1 94 0.0032 23.1 1.1 14 103-116 40-54 (94)
No 1
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=6.3e-61 Score=394.19 Aligned_cols=127 Identities=68% Similarity=1.094 Sum_probs=112.9
Q ss_pred CCCCCCCCeeecceeeeeCceeEEEeecCCceeecCCCCeEEeeeeeEEEEeeccccCcccccCcceEEEeChhhHHHHh
Q 030376 50 SAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLL 129 (178)
Q Consensus 50 ~~~~~~~~Rvy~~ysVYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPa~G~RqYDW~kKq~FaLS~tEvG~Ll 129 (178)
+++|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+||||||||+|+|||||+|||+|+|||+|||+||
T Consensus 2 ~~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Ll 81 (178)
T 3r9z_A 2 ADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI 81 (178)
T ss_dssp -----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHH
T ss_pred CCCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceeeeeCCCCCCCCCCceeeeEEeEeCCCc--eEEEEeeeeee
Q 030376 130 TMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLSEYSTC 176 (178)
Q Consensus 130 sl~~~~s~effHDP~~g~S~~G~v~K~LkveP~~dG--~f~nLsV~n~~ 176 (178)
+++++++|||||||+||+|++|+|+|+|||||+||| +||||||+|++
T Consensus 82 sl~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~ 130 (178)
T 3r9z_A 82 SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNN 130 (178)
T ss_dssp TCCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETT
T ss_pred HhcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEeccc
Confidence 999999999999999999999999999999999998 99999999985
No 2
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=6.5e-57 Score=381.38 Aligned_cols=126 Identities=46% Similarity=0.864 Sum_probs=120.0
Q ss_pred CCCCCCeeecceeeeeCceeEEEeecCCceeecCCCCeEEeeeeeEEEEeeccccCcccccCcceEEEeChhhHHHHhhc
Q 030376 52 KGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTM 131 (178)
Q Consensus 52 ~~~~~~Rvy~~ysVYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPa~G~RqYDW~kKq~FaLS~tEvG~Llsl 131 (178)
++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||+|
T Consensus 31 a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEFAPa~g~RqYDW~kKq~FsLS~tEvG~LLsl 110 (227)
T 1l3a_A 31 QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISL 110 (227)
T ss_dssp ----CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEEEEBCSTTCBCGGGCEEEEECHHHHHHHHTC
T ss_pred CCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEEeeccCccccccccceEEEeCHHHHhHHHhc
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeCCCCCCCCCCceeeeEEeEeCCCc--eEEEEeeeeeec
Q 030376 132 GPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLSEYSTCV 177 (178)
Q Consensus 132 ~~~~s~effHDP~~g~S~~G~v~K~LkveP~~dG--~f~nLsV~n~~~ 177 (178)
+++++|||||||+||+|++|+|+|+|+|||+||| +||||||+|++.
T Consensus 111 ~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~ 158 (227)
T 1l3a_A 111 GTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLI 158 (227)
T ss_dssp CTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGG
T ss_pred ccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeeccc
Confidence 9999999999999999999999999999999997 999999999853
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=89.41 E-value=0.25 Score=40.01 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=46.8
Q ss_pred eecceeeeeCceeEEEeecCCceeecCCCCeEEeeeeeEEEEeeccccCcccccCcceEE
Q 030376 59 IFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHF 118 (178)
Q Consensus 59 vy~~ysVYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPa~G~RqYDW~kKq~F 118 (178)
-|++|.-|++.+-.+.+..-|.|.-.-+|.+ .|++| ||.+|-||--|+.|-.|
T Consensus 77 nf~pf~hf~secpvstrdcepvfgyt~a~ef------rvivq-apragfrqcvwqhkcry 129 (175)
T 1aoc_A 77 NFPPFTHFKSECPVSTRDCEPVFGYTVAGEF------RVIVQ-APRAGFRQCVWQHKCRF 129 (175)
T ss_dssp GSTTCCCCSSBCCEEEECCCCSEEEBTTCCE------EEECC-BTTTTBCBCCCEEEETT
T ss_pred cCCCcccccccCCcccccccccccceecceE------EEEEe-CchhhhHHHHHhhhccc
Confidence 4789999999999999999999998888855 46777 99999999999998654
No 4
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=32.83 E-value=14 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=11.6
Q ss_pred ccccCcccccCcc
Q 030376 103 PAIGERKYDWAKK 115 (178)
Q Consensus 103 Pa~G~RqYDW~kK 115 (178)
|+.--|+|+|+.|
T Consensus 42 pa~r~R~ynWs~K 54 (57)
T 1vq8_1 42 KSAKRRDYEWQSK 54 (57)
T ss_dssp TCSSCCCCGGGSC
T ss_pred chhhhcCcchhhh
Confidence 7888899999987
No 5
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.23 E-value=22 Score=24.75 Aligned_cols=13 Identities=46% Similarity=0.797 Sum_probs=10.9
Q ss_pred ccccCcccccCcc
Q 030376 103 PAIGERKYDWAKK 115 (178)
Q Consensus 103 Pa~G~RqYDW~kK 115 (178)
|+.--|+|+|+.|
T Consensus 42 ps~r~R~YnWs~K 54 (62)
T 3j21_e 42 RSRRLRKYRWSKK 54 (62)
T ss_dssp TCSSCCCCTTCSH
T ss_pred hhhhhccccHHHH
Confidence 6666799999987
No 6
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=18.93 E-value=35 Score=25.49 Aligned_cols=13 Identities=54% Similarity=1.030 Sum_probs=11.5
Q ss_pred ccccCcccccCcc
Q 030376 103 PAIGERKYDWAKK 115 (178)
Q Consensus 103 Pa~G~RqYDW~kK 115 (178)
|+.--|+|+|+.|
T Consensus 40 ps~r~R~YnWs~K 52 (94)
T 3iz5_l 40 PAARIRKYNWSVK 52 (94)
T ss_dssp SCSSCCCCSSSCH
T ss_pred chhhcccccHHHh
Confidence 7777899999987
No 7
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=16.16 E-value=1.4e+02 Score=26.47 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=42.5
Q ss_pred CcccccCcceEEEeChhhHHHHhhccCCCceeeeeCCCCCCCCCCceeeeEEeEeCC---CceEEEEee
Q 030376 107 ERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANA---DGFFISLSE 172 (178)
Q Consensus 107 ~RqYDW~kKq~FaLS~tEvG~Llsl~~~~s~effHDP~~g~S~~G~v~K~LkveP~~---dG~f~nLsV 172 (178)
+.+++|+.| .++|-|...=+-+.+.+=+.+.|||.. .-.|.+.|+-.. +|.|+|+.+
T Consensus 168 P~~F~~~gk---~~TP~~F~~~v~~~~~dyV~l~n~p~~------py~~~y~ve~~~N~~~g~~~Nvp~ 227 (383)
T 3pw3_A 168 PEKFTYKGK---EYTPKSFFESTGLKASDYVSLTSYTHH------PFYTQFPLEIQDNWRHGMSYNLPL 227 (383)
T ss_dssp CSSEEETTE---EECHHHHHHHHTCCGGGEEEEECCSSS------CTTCEEECCCTTCTTCCEEEECCH
T ss_pred CceEEecCC---CcCHHHHHHHhCCCccceEEEeeCCCC------ccCceEEEecCCCccCCccCCcCH
Confidence 789999988 569999886666667889999999963 345677777644 357777643
No 8
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=15.34 E-value=52 Score=24.61 Aligned_cols=13 Identities=54% Similarity=1.130 Sum_probs=11.3
Q ss_pred ccccCcccccCcc
Q 030376 103 PAIGERKYDWAKK 115 (178)
Q Consensus 103 Pa~G~RqYDW~kK 115 (178)
|+.--|+|+|+.|
T Consensus 40 pa~k~R~ynWs~K 52 (97)
T 2zkr_2 40 PAKRKRKYNWSAK 52 (97)
T ss_dssp TTSSCCCCSSSSC
T ss_pred chHhccCcchhhh
Confidence 6777899999998
No 9
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=12.34 E-value=2.9e+02 Score=22.41 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=27.5
Q ss_pred ccCcceEEEeCh---hhHHHHhhccCCCceeeeeCCCCCCCCCCceeeeEEeEeCCCc
Q 030376 111 DWAKKQHFALSP---TEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG 165 (178)
Q Consensus 111 DW~kKq~FaLS~---tEvG~Llsl~~~~s~effHDP~~g~S~~G~v~K~LkveP~~dG 165 (178)
+-+.+..-.||. .|+...|.+.--+ .| .+++ . ...=.|.|+++++|+||.
T Consensus 55 ~~~~~g~v~l~~~~~~~l~~~Lt~~G~E-ve-v~~~--~-~~~vvVG~V~~~e~hP~A 107 (199)
T 3bu2_A 55 TLTGNGHIKLTETLVQAFQKAIEAAGFT-YK-LDAD--F-TPKFVVGYVETKDKHPDA 107 (199)
T ss_dssp CCC---CCCCCHHHHHHHHHHHHHTTCC-CC-CCCC--C-CCSEEEEEEEEEEECTTT
T ss_pred eeccCCceeCCHHHHHHHHHHHHhCCCe-EE-EEEc--C-CCCeEEEEEEEEEECCCC
Confidence 443444456884 4555555432222 44 3444 1 233457899999999997
No 10
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=10.12 E-value=94 Score=23.14 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=11.9
Q ss_pred ccccCcccc-cCcce
Q 030376 103 PAIGERKYD-WAKKQ 116 (178)
Q Consensus 103 Pa~G~RqYD-W~kKq 116 (178)
|+.--|+|+ |+.|-
T Consensus 40 ps~r~R~Yn~Ws~Ka 54 (94)
T 4a18_A 40 PDAKMRRYDGWGQKV 54 (94)
T ss_dssp GGSSCCCCTTTCTTG
T ss_pred cHHHhcCccHHHHHh
Confidence 778889999 99873
Done!