Query 030377
Match_columns 178
No_of_seqs 132 out of 2074
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 20:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 1.3E-30 4.3E-35 176.3 14.3 137 25-171 27-163 (169)
2 3v30_A DNA-binding protein rfx 100.0 5.7E-28 1.9E-32 163.4 14.9 137 26-172 27-163 (172)
3 3f6q_A Integrin-linked protein 100.0 1.4E-27 4.9E-32 162.5 16.6 138 25-172 29-166 (179)
4 3c5r_A BARD-1, BRCA1-associate 100.0 2.7E-28 9.1E-33 159.3 12.0 130 30-169 5-134 (137)
5 3v31_A Ankyrin repeat family A 100.0 1.4E-27 4.8E-32 160.7 15.7 137 26-172 27-163 (167)
6 3twr_A Tankyrase-2; ankyrin re 100.0 1.8E-27 6.1E-32 159.9 15.9 130 27-167 34-163 (165)
7 1d9s_A Cyclin-dependent kinase 100.0 2.3E-28 7.7E-33 159.5 11.1 132 27-168 4-135 (136)
8 4gpm_A Engineered protein OR26 100.0 2E-27 6.7E-32 160.6 14.4 126 37-172 6-131 (169)
9 2rfm_A Putative ankyrin repeat 100.0 4E-27 1.4E-31 161.9 15.1 131 27-167 60-190 (192)
10 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.5E-27 1.2E-31 159.2 14.3 131 26-166 38-168 (169)
11 2jab_A H10-2-G3; HER2, darpin, 100.0 1.7E-27 5.9E-32 155.3 12.0 126 31-166 10-135 (136)
12 1awc_B Protein (GA binding pro 99.9 3.3E-27 1.1E-31 156.8 13.3 124 31-164 30-153 (153)
13 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.8E-27 2.3E-31 149.9 13.7 125 34-168 1-125 (126)
14 2rfm_A Putative ankyrin repeat 99.9 4E-27 1.4E-31 161.9 13.0 136 26-171 26-161 (192)
15 4b93_B Ankyrin repeat domain-c 99.9 3.2E-27 1.1E-31 170.7 13.0 122 28-153 79-229 (269)
16 4b93_B Ankyrin repeat domain-c 99.9 6.8E-27 2.3E-31 169.0 13.9 101 26-132 143-244 (269)
17 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.7E-27 1.6E-31 157.2 12.1 132 27-168 30-161 (162)
18 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.1E-26 3.8E-31 154.5 13.3 129 26-166 27-155 (156)
19 3jxi_A Vanilloid receptor-rela 99.9 5E-27 1.7E-31 168.4 10.8 140 28-175 86-256 (260)
20 2vge_A RELA-associated inhibit 99.9 4.4E-26 1.5E-30 161.1 15.4 137 28-172 14-151 (229)
21 3aaa_C Myotrophin, protein V-1 99.9 1.7E-26 5.9E-31 148.0 11.8 112 32-151 4-115 (123)
22 1bi7_B P16INK4A, MTS1, multipl 99.9 2.3E-27 7.9E-32 158.2 8.0 133 29-172 6-139 (156)
23 1ikn_D Protein (I-kappa-B-alph 99.9 1E-25 3.4E-30 159.5 16.9 157 9-171 45-211 (236)
24 1yyh_A HN1;, notch 1, ankyrin 99.9 2.2E-26 7.5E-31 164.7 13.3 135 27-171 116-250 (253)
25 2rfa_A Transient receptor pote 99.9 8.2E-26 2.8E-30 159.4 15.3 136 32-171 72-224 (232)
26 3v31_A Ankyrin repeat family A 99.9 5E-26 1.7E-30 153.1 13.4 128 34-171 2-129 (167)
27 2f8y_A Notch homolog 1, transl 99.9 9.8E-26 3.4E-30 158.1 15.4 136 27-172 84-219 (223)
28 2rfa_A Transient receptor pote 99.9 1.3E-25 4.3E-30 158.5 15.2 144 25-170 27-184 (232)
29 1oy3_D Transcription factor in 99.9 8.8E-26 3E-30 163.2 14.1 97 70-171 156-252 (282)
30 3aji_A 26S proteasome non-ATPa 99.9 2.5E-25 8.5E-30 156.8 16.0 134 28-171 66-199 (231)
31 3t8k_A Uncharacterized protein 99.9 8.4E-27 2.9E-31 159.9 7.8 135 27-171 29-181 (186)
32 2etb_A Transient receptor pote 99.9 2.3E-26 7.8E-31 164.7 10.3 134 31-172 86-249 (256)
33 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.3E-25 4.6E-30 151.4 13.5 132 30-171 9-140 (169)
34 3hra_A Ankyrin repeat family p 99.9 1.9E-25 6.6E-30 154.2 14.4 137 27-171 31-172 (201)
35 3aji_A 26S proteasome non-ATPa 99.9 2.6E-25 8.9E-30 156.7 15.2 128 30-167 101-228 (231)
36 1yyh_A HN1;, notch 1, ankyrin 99.9 1.9E-25 6.5E-30 159.8 14.6 152 10-171 58-217 (253)
37 2xai_A ASB-9, ankyrin repeat a 99.9 3E-25 1E-29 159.5 15.6 130 28-168 29-158 (261)
38 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.1E-26 2.4E-30 160.9 11.9 133 32-172 34-167 (239)
39 3ehr_A Osteoclast-stimulating 99.9 2.3E-26 8E-31 161.5 9.2 132 29-170 67-199 (222)
40 4hbd_A KN motif and ankyrin re 99.9 2.6E-25 9E-30 161.2 14.9 134 28-167 104-273 (276)
41 1oy3_D Transcription factor in 99.9 2.7E-25 9.1E-30 160.7 14.8 135 28-172 38-220 (282)
42 2pnn_A Transient receptor pote 99.9 7.5E-26 2.6E-30 163.5 11.7 130 31-168 97-257 (273)
43 1ikn_D Protein (I-kappa-B-alph 99.9 1.1E-25 3.6E-30 159.4 12.2 154 8-171 7-178 (236)
44 1k1a_A B-cell lymphoma 3-encod 99.9 2.7E-25 9.2E-30 157.4 14.3 129 28-165 109-237 (241)
45 1s70_B 130 kDa myosin-binding 99.9 5.6E-25 1.9E-29 160.5 15.4 136 27-170 65-258 (299)
46 2dzn_A Probable 26S proteasome 99.9 7.6E-25 2.6E-29 153.9 15.2 130 31-170 68-201 (228)
47 1ihb_A P18-INK4C(INK6), cyclin 99.9 2E-25 6.7E-30 149.3 11.6 127 33-170 3-129 (162)
48 2f8y_A Notch homolog 1, transl 99.9 8.5E-25 2.9E-29 153.3 15.2 153 9-171 25-185 (223)
49 1awc_B Protein (GA binding pro 99.9 3.7E-25 1.3E-29 146.9 12.6 126 35-171 2-127 (153)
50 3ljn_A Hypothetical protein; a 99.9 1.3E-25 4.4E-30 168.3 11.5 129 31-169 134-269 (364)
51 3b7b_A Euchromatic histone-lys 99.9 1E-24 3.4E-29 154.2 15.0 119 28-154 104-222 (237)
52 2etb_A Transient receptor pote 99.9 8.8E-26 3E-30 161.6 9.7 138 31-170 39-207 (256)
53 3d9h_A CDNA FLJ77766, highly s 99.9 1.2E-24 4.1E-29 158.3 15.4 130 28-168 85-214 (285)
54 3hra_A Ankyrin repeat family p 99.9 8.9E-25 3.1E-29 150.9 14.0 148 9-166 39-200 (201)
55 1k1a_A B-cell lymphoma 3-encod 99.9 2.4E-24 8.1E-29 152.5 16.5 129 32-170 76-209 (241)
56 2dzn_A Probable 26S proteasome 99.9 2.2E-24 7.4E-29 151.6 15.9 136 25-167 26-163 (228)
57 3b7b_A Euchromatic histone-lys 99.9 1.5E-24 5.1E-29 153.3 14.9 154 9-172 11-172 (237)
58 3kea_A K1L; tropism, ANK repea 99.9 1.7E-25 5.8E-30 162.9 10.3 132 27-170 23-155 (285)
59 3f6q_A Integrin-linked protein 99.9 1.1E-24 3.7E-29 148.2 13.6 129 33-171 3-132 (179)
60 2xai_A ASB-9, ankyrin repeat a 99.9 1.6E-24 5.6E-29 155.7 15.2 133 27-171 61-193 (261)
61 3v30_A DNA-binding protein rfx 99.9 8E-25 2.7E-29 147.8 12.8 128 35-172 2-130 (172)
62 3deo_A Signal recognition part 99.9 1.3E-25 4.6E-30 153.4 8.9 113 31-152 40-153 (183)
63 3twr_A Tankyrase-2; ankyrin re 99.9 5.8E-25 2E-29 147.6 11.7 131 31-171 4-135 (165)
64 3d9h_A CDNA FLJ77766, highly s 99.9 1.8E-24 6.1E-29 157.4 15.0 134 27-171 51-184 (285)
65 1s70_B 130 kDa myosin-binding 99.9 4.1E-24 1.4E-28 155.9 17.0 164 9-178 73-299 (299)
66 3ui2_A Signal recognition part 99.9 3.4E-25 1.2E-29 157.9 9.3 129 31-168 41-184 (244)
67 1n11_A Ankyrin; clathrin, BAND 99.9 3E-24 1E-28 164.4 15.0 132 29-170 239-370 (437)
68 1n11_A Ankyrin; clathrin, BAND 99.9 1.8E-24 6.1E-29 165.6 13.5 153 9-171 14-173 (437)
69 2pnn_A Transient receptor pote 99.9 6.9E-25 2.4E-29 158.4 10.1 140 30-171 49-220 (273)
70 1wdy_A 2-5A-dependent ribonucl 99.9 7E-24 2.4E-28 153.1 15.4 131 32-172 145-281 (285)
71 3utm_A Tankyrase-1; tankyrase, 99.9 7.3E-24 2.5E-28 157.3 15.5 134 28-171 84-307 (351)
72 2fo1_E LIN-12 protein; beta-ba 99.9 2.6E-24 8.9E-29 162.0 13.2 139 26-170 226-372 (373)
73 1n0q_A 3ANK, 3 ankyrin repeats 99.9 7E-24 2.4E-28 129.4 12.3 93 34-132 1-93 (93)
74 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.4E-24 1.2E-28 142.5 11.6 124 35-170 2-126 (156)
75 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.5E-25 2.6E-29 155.6 8.2 131 32-173 2-132 (239)
76 3utm_A Tankyrase-1; tankyrase, 99.9 1.6E-23 5.6E-28 155.4 15.8 102 26-133 49-150 (351)
77 3kea_A K1L; tropism, ANK repea 99.9 3E-24 1E-28 156.2 10.7 126 34-171 61-188 (285)
78 1dcq_A PYK2-associated protein 99.9 1.2E-23 4.1E-28 152.6 13.3 131 36-172 131-266 (278)
79 3jxi_A Vanilloid receptor-rela 99.9 3.2E-24 1.1E-28 153.7 10.1 137 32-170 43-211 (260)
80 3ljn_A Hypothetical protein; a 99.9 7.9E-24 2.7E-28 158.6 12.4 97 69-171 135-238 (364)
81 1sw6_A Regulatory protein SWI6 99.9 2.9E-24 1E-28 159.1 9.1 139 26-172 121-311 (327)
82 1wdy_A 2-5A-dependent ribonucl 99.9 6.2E-23 2.1E-27 148.2 15.7 125 32-166 36-170 (285)
83 3eu9_A Huntingtin-interacting 99.9 3.2E-23 1.1E-27 146.3 12.6 133 28-170 102-236 (240)
84 2b0o_E UPLC1; arfgap, structur 99.9 4.3E-23 1.5E-27 151.3 13.3 131 34-170 150-285 (301)
85 2fo1_E LIN-12 protein; beta-ba 99.9 2.8E-23 9.5E-28 156.4 12.3 133 26-166 157-301 (373)
86 3jue_A Arfgap with coiled-coil 99.9 3.2E-23 1.1E-27 155.6 12.4 126 34-169 198-326 (368)
87 2l6b_A NR1C; ankyrin, consensu 99.9 6.2E-24 2.1E-28 134.5 7.2 110 29-146 3-112 (115)
88 3eu9_A Huntingtin-interacting 99.9 1.5E-22 5E-27 142.9 14.1 140 26-173 33-172 (240)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-23 6E-28 139.3 8.7 133 8-149 11-151 (156)
90 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-22 5.9E-27 157.3 13.1 132 34-171 131-267 (497)
91 1sw6_A Regulatory protein SWI6 99.9 8.2E-23 2.8E-27 151.4 10.0 138 8-153 130-327 (327)
92 4g8k_A 2-5A-dependent ribonucl 99.9 5.4E-22 1.8E-26 147.2 13.1 127 32-168 165-297 (337)
93 2b0o_E UPLC1; arfgap, structur 99.9 2.2E-22 7.4E-27 147.5 10.4 110 31-154 186-298 (301)
94 1dcq_A PYK2-associated protein 99.9 7.3E-22 2.5E-26 143.2 12.9 112 28-155 162-276 (278)
95 1d9s_A Cyclin-dependent kinase 99.9 2.7E-22 9.4E-27 130.5 9.2 100 26-132 36-136 (136)
96 2jab_A H10-2-G3; HER2, darpin, 99.9 1.9E-21 6.4E-26 126.5 12.5 99 26-130 38-136 (136)
97 2vge_A RELA-associated inhibit 99.9 8.7E-23 3E-27 144.2 6.6 101 27-133 46-149 (229)
98 3t8k_A Uncharacterized protein 99.9 6.5E-22 2.2E-26 135.5 10.0 128 35-171 6-148 (186)
99 1n0q_A 3ANK, 3 ankyrin repeats 99.9 8.1E-22 2.8E-26 120.1 9.3 91 72-168 2-92 (93)
100 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.2E-21 1.8E-25 122.3 12.7 101 26-132 26-126 (126)
101 4g8k_A 2-5A-dependent ribonucl 99.9 5.1E-21 1.7E-25 142.0 13.0 130 33-171 23-152 (337)
102 2zgd_A 3 repeat synthetic anky 99.8 1.8E-20 6.2E-25 117.7 10.7 95 26-126 15-109 (110)
103 3c5r_A BARD-1, BRCA1-associate 99.8 3E-20 1E-24 120.8 10.4 97 69-171 7-103 (137)
104 3lvq_E ARF-GAP with SH3 domain 99.8 4E-20 1.4E-24 144.0 12.0 105 32-150 168-275 (497)
105 4hbd_A KN motif and ankyrin re 99.8 1.7E-19 6E-24 130.5 13.9 100 26-131 174-274 (276)
106 2aja_A Ankyrin repeat family p 99.8 2E-22 6.7E-27 151.7 -2.5 132 28-167 85-222 (376)
107 3jue_A Arfgap with coiled-coil 99.8 9.9E-20 3.4E-24 136.6 12.0 121 27-153 225-348 (368)
108 2aja_A Ankyrin repeat family p 99.8 1.1E-21 3.8E-26 147.6 -1.0 142 11-170 94-251 (376)
109 2l6b_A NR1C; ankyrin, consensu 99.8 7.2E-20 2.5E-24 115.6 7.0 97 69-171 6-102 (115)
110 3ehr_A Osteoclast-stimulating 99.8 6.8E-20 2.3E-24 128.4 6.9 102 26-133 97-199 (222)
111 3aaa_C Myotrophin, protein V-1 99.8 2.6E-19 8.7E-24 114.4 9.0 97 69-171 4-100 (123)
112 2zgd_A 3 repeat synthetic anky 99.8 1.8E-19 6.2E-24 113.1 7.4 90 69-164 21-110 (110)
113 3deo_A Signal recognition part 99.8 1.6E-18 5.3E-23 118.2 10.6 114 27-166 68-181 (183)
114 3ui2_A Signal recognition part 99.8 2.3E-18 7.8E-23 122.5 10.9 100 27-131 69-184 (244)
115 3qil_A Clathrin heavy chain 1; 40.2 4.8 0.00017 24.9 -0.4 34 28-61 28-61 (125)
116 1gp8_A Protein (scaffolding pr 38.1 31 0.0011 16.4 2.3 17 39-55 17-33 (40)
117 3zrh_A Ubiquitin thioesterase 34.9 1.5E+02 0.0052 22.6 8.2 53 41-93 28-90 (454)
118 3spa_A Mtrpol, DNA-directed RN 33.9 47 0.0016 28.8 4.2 115 37-170 132-262 (1134)
119 4g26_A Pentatricopeptide repea 24.0 1.3E+02 0.0045 23.2 5.1 107 49-170 91-205 (501)
120 4g26_A Pentatricopeptide repea 21.6 2.2E+02 0.0075 21.9 5.9 82 37-128 110-199 (501)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.3e-30 Score=176.30 Aligned_cols=137 Identities=39% Similarity=0.568 Sum_probs=124.7
Q ss_pred hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC
Q 030377 25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104 (178)
Q Consensus 25 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 104 (178)
..+++.+|..|+||||+|+..+..++++.|++.|++++.. +..|+||||+|+..++.+++++|++.|++++..+..
T Consensus 27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~----d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~ 102 (169)
T 4gpm_A 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK----DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 102 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh----ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence 3567889999999999999999999999999999999988 889999999999999999999999999999998888
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|+||||+|+..|+.+++++|++.|+++ +..|..|.|||++|+..+. .+++++|.+...+..
T Consensus 103 --G~TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~G~TpL~~A~~~g~--~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 103 --GRTPLHHAAENGHKEVVKLLISKGADV--NTSDSDGRTPLDLAREHGN--EEVVKLLEKQGGWLE 163 (169)
T ss_dssp --SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHTC-----
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCcC
Confidence 999999999999999999999999988 8899999999999998766 599999998876643
No 2
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=5.7e-28 Score=163.35 Aligned_cols=137 Identities=27% Similarity=0.382 Sum_probs=126.6
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
..++.+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~- 101 (172)
T 3v30_A 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL----AKERESALSLASTGGYTDIVGLLLERDVDINIYDWN- 101 (172)
T ss_dssp GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT-
T ss_pred ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh----cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC-
Confidence 336778899999999999999999999999999999987 788999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.++..+...
T Consensus 102 -g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~~--~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 102 -GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDLAVALGY--RKVQQVIENHILKLFQ 163 (172)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC--HHHHHHHHHHHHHHSC
T ss_pred -CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHhCc--HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 8889999999999998766 5999999998877653
No 3
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.4e-27 Score=162.49 Aligned_cols=138 Identities=29% Similarity=0.382 Sum_probs=127.3
Q ss_pred hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC
Q 030377 25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104 (178)
Q Consensus 25 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 104 (178)
..+++..|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~ 104 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM----NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH 104 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence 4456778899999999999999999999999999999987 789999999999999999999999999999998877
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+.. ...+++++|.+...+...
T Consensus 105 --g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~~~--~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 105 --GNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPVDKAKAP--LRELLRERAEKMGQNLNR 166 (179)
T ss_dssp --SCCHHHHHHHTTCHHHHHHHHHTTCCS--SBCCTTSCCGGGGSCHH--HHHHHHHHHHHTTCCCSC
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHCCCCc--chhccCCCCcHHHHHHH--HHHHHHHHHHHhhcCccc
Confidence 999999999999999999999999988 88999999999999865 456999999998877754
No 4
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.96 E-value=2.7e-28 Score=159.28 Aligned_cols=130 Identities=34% Similarity=0.449 Sum_probs=115.8
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCc
Q 030377 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT 109 (178)
Q Consensus 30 ~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t 109 (178)
.+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t 78 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK----DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ--NDS 78 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG--GCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC--CCC
Confidence 57899999999999999999999999999999987 789999999999999999999999999999998887 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhh
Q 030377 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA 169 (178)
Q Consensus 110 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~ 169 (178)
|||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+ ..++++++.+..+.
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~~~~--~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPVDYTDDES--MKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCGGGGCCCHH--HHHHHSCC------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHhhcc--HHHHHhhccccccC
Confidence 999999999999999999999988 889999999999998653 46888877765544
No 5
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.4e-27 Score=160.69 Aligned_cols=137 Identities=25% Similarity=0.361 Sum_probs=126.4
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~- 101 (167)
T 3v31_A 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN- 101 (167)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT-
T ss_pred CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC-
Confidence 346778899999999999999999999999999999987 788999999999999999999999999999988887
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.++..+...
T Consensus 102 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~--~~~~~~L~~~~~~~~~ 163 (167)
T 3v31_A 102 -GGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAVALGY--RSVQQVIESHLLKLLQ 163 (167)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC--HHHHHHHHHHHHHHCS
T ss_pred -CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCc--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 8889999999999998766 5999999998876544
No 6
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.8e-27 Score=159.87 Aligned_cols=130 Identities=31% Similarity=0.450 Sum_probs=119.3
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
.....+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-- 107 (165)
T 3twr_A 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK----DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW-- 107 (165)
T ss_dssp TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc----CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCC--
Confidence 45567778999999999999999999999999999988 788999999999999999999999999999998887
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhh
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF 167 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~ 167 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|.. +. .+++++|.+..
T Consensus 108 g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~a~~-~~--~~i~~~L~~~g 163 (165)
T 3twr_A 108 KFTPLHEAAAKGKYEICKLLLQHGADP--TKKNRDGNTPLDLVKD-GD--TDIQDLLRGDA 163 (165)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTGGGSCT-TC--HHHHHHHHTC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCChhHhHhc-CC--hHHHHHHhhcc
Confidence 999999999999999999999999988 8899999999999876 44 49999998754
No 7
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=2.3e-28 Score=159.53 Aligned_cols=132 Identities=23% Similarity=0.341 Sum_probs=120.9
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+. ++.+++++|+..|++++..+...
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~- 77 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL----NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT- 77 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT-
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc----CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC-
Confidence 46778999999999999999999999999999999987 7899999999999 99999999999999998876541
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.++..
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~~~--~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPVDLAEEQGH--RDIARYLHAATG 135 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCC--CCCSSSSSCHHHHHHHHTC--HHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 689999999999999999999999988 8889999999999998765 599999998754
No 8
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=2e-27 Score=160.62 Aligned_cols=126 Identities=38% Similarity=0.569 Sum_probs=117.7
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHH
Q 030377 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAK 116 (178)
Q Consensus 37 t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~ 116 (178)
+.|+.|+..|+.++|+.|++.|++++.. +..|+|||++|+..++.+++++|+..|++++..+.. |+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~----d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~--g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNAS----DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC--CCCHHHHHHH
Confidence 4699999999999999999999999988 889999999999999999999999999999998887 9999999999
Q ss_pred hCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 117 ERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 117 ~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
.|+.+++++|++.|+++ +.+|..|.||||+|+..+. .+++++|.+...++..
T Consensus 80 ~g~~~~v~~Ll~~gadv--n~~d~~G~TpLh~A~~~g~--~~~v~~Ll~~gad~~~ 131 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGH--KEVVKLLISKGADVNT 131 (169)
T ss_dssp TTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCTTC
T ss_pred cCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccc
Confidence 99999999999999988 8899999999999998876 4999999998776643
No 9
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=4e-27 Score=161.90 Aligned_cols=131 Identities=28% Similarity=0.321 Sum_probs=97.9
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++..|..|+||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-- 133 (192)
T 2rfm_A 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK----DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE-- 133 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT--
T ss_pred ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--
Confidence 34556667777777777777777777777777777766 667777888877777777777777777777777666
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhh
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF 167 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~ 167 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.+..
T Consensus 134 g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~~--~~~v~~Ll~~~ 190 (192)
T 2rfm_A 134 GETPLIVASKYGRSEIVKKLLELGADI--SARDLTGLTAEASARIFGR--QEVIKIFTEVR 190 (192)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCBCTTSCBHHHHHHHTTC--HHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHhCc--HHHHHHHHhcc
Confidence 777888887777777888887777766 6677777788877776654 37777777654
No 10
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.5e-27 Score=159.21 Aligned_cols=131 Identities=38% Similarity=0.573 Sum_probs=120.5
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~- 112 (169)
T 2y1l_E 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV----DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME- 112 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-
Confidence 346678889999999999999999999999999999887 788999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHh
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~ 166 (178)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||+++|+..+. .+++++|.+.
T Consensus 113 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~--~~~~~~L~~~ 168 (169)
T 2y1l_E 113 -GHTPLHLAAMFGHLEIVEVLLKNGADV--NAQDKFGKTAFDISIDNGN--EDLAEILQKL 168 (169)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHTC
T ss_pred -CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHhCC--HHHHHHHHHc
Confidence 999999999999999999999999987 8889999999999998766 4999999864
No 11
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=1.7e-27 Score=155.34 Aligned_cols=126 Identities=32% Similarity=0.404 Sum_probs=116.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcH
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP 110 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~ 110 (178)
....+.|+||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~t~ 83 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAK----DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI--GFTP 83 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCH
Confidence 4556789999999999999999999999999987 788999999999999999999999999999988887 9999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHh
Q 030377 111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166 (178)
Q Consensus 111 l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~ 166 (178)
||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.+.
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~tpl~~A~~~~~--~~~~~~Ll~~ 135 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHGADV--NAQDKFGKTAFDISIGNGN--EDLAEILQKL 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC--cCcCCCCCCHHHHHHHCCC--HHHHHHHHHc
Confidence 99999999999999999999988 8889999999999998766 4999999864
No 12
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=3.3e-27 Score=156.80 Aligned_cols=124 Identities=29% Similarity=0.429 Sum_probs=116.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcH
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP 110 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~ 110 (178)
.+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+.. |.||
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~ 103 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR----TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML--KMTA 103 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--SCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC--CCCH
Confidence 6788999999999999999999999999999887 788999999999999999999999999999998877 9999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHH
Q 030377 111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR 164 (178)
Q Consensus 111 l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~ 164 (178)
||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+.. +++++|+
T Consensus 104 L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~~~--~i~~~L~ 153 (153)
T 1awc_B 104 LHWATEHNHQEVVELLIKYGADV--HTQSKFCKTAFDISIDNGNE--DLAEILQ 153 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCH--HHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHcCCH--HHHHHhC
Confidence 99999999999999999999988 88899999999999987664 8998874
No 13
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=6.8e-27 Score=149.91 Aligned_cols=125 Identities=45% Similarity=0.707 Sum_probs=116.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHH
Q 030377 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT 113 (178)
Q Consensus 34 ~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~ 113 (178)
+|+||||.|+..|+.+++++|++.|.+++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CCcHHHH
Confidence 5899999999999999999999999999887 788999999999999999999999999999988877 9999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 114 a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.+...
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGH--LEVVKLLLEAGA 125 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHHTC
T ss_pred HHHcChHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCc--HHHHHHHHHcCC
Confidence 99999999999999999987 8889999999999998765 599999998754
No 14
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=4e-27 Score=161.92 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=125.3
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
..++.+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~- 100 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK----DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS- 100 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc----cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-
Confidence 345778999999999999999999999999999999887 788999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+.. +++++|.+...+..
T Consensus 101 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~~~ 161 (192)
T 2rfm_A 101 -GKTPLMWSIIFGYSEMSYFLLEHGANV--NDRNLEGETPLIVASKYGRS--EIVKKLLELGADIS 161 (192)
T ss_dssp -SCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCCTT
T ss_pred -CCcHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCCCC
Confidence 999999999999999999999999988 88899999999999987664 99999998866654
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=170.67 Aligned_cols=122 Identities=31% Similarity=0.450 Sum_probs=80.9
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-----------------------------CCCCCCCcHHHH
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW-----------------------------GPKSKGVTPLHL 78 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-----------------------------~~~~~~~t~l~~ 78 (178)
++.+|..|+||||+|+..|+.+++++|++.|++++.... ..+..|.||||+
T Consensus 79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~ 158 (269)
T 4b93_B 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIY 158 (269)
T ss_dssp TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 445556666666666666666666666655555443310 015567777777
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccccc
Q 030377 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE 153 (178)
Q Consensus 79 a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~ 153 (178)
|+..|+.+++++|++.|++++..+.. |+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+
T Consensus 159 A~~~g~~~~v~~Ll~~gadvn~~~~~--g~t~Lh~A~~~g~~~~v~~Ll~~Gad~--~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 159 ACSGGHHELVALLLQHGASINASNNK--GNTALHEAVIEKHVFVVELLLLHGASV--QVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HHHTTCGGGHHHHHHTTCCTTCBCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCSGGGSCTTC
T ss_pred HHHCCCHHHHHHHHHCCCCCCccccC--CCcHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHhCC
Confidence 77777777777777777777776666 777777777777777777777777766 667777777777776543
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=168.97 Aligned_cols=101 Identities=30% Similarity=0.346 Sum_probs=85.4
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+++.+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+.+|++++..+..
T Consensus 143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~----~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~- 217 (269)
T 4b93_B 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS----NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR- 217 (269)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCB----CTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT-
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcc----ccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-
Confidence 356778899999999999999999999999999999988 889999999999999999999999999999998887
Q ss_pred CCCcHHHHHHHhCC-HHHHHHHHHcCCC
Q 030377 106 CGWTPLHTAAKERK-KEAVRFLIENGAF 132 (178)
Q Consensus 106 ~g~t~l~~a~~~~~-~~i~~~Ll~~g~~ 132 (178)
|+||||+|+..++ .++++.|...++.
T Consensus 218 -G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 218 -QRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp -SCCSGGGSCTTCHHHHHTTC-------
T ss_pred -CCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 9999999988775 3555555555443
No 17
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=4.7e-27 Score=157.21 Aligned_cols=132 Identities=24% Similarity=0.341 Sum_probs=120.1
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++.+|..|+||||+|+. |+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-- 102 (162)
T 1ihb_A 30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK----DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-- 102 (162)
T ss_dssp CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--
Confidence 456678899999999999 9999999999999999987 789999999999999999999999999999988887
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
|.||||+|+..|+.+++++|++.|++. .+..|..|.||+++|+..+. .+++++|.++..
T Consensus 103 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~GA 161 (162)
T 1ihb_A 103 GNLPLHLAAKEGHLRVVEFLVKHTASN-VGHRNHKGDTACDLARLYGR--NEVVSLMQANGA 161 (162)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHccCCC-CCCcCCCCCcHHHHHHHcCC--HHHHHHHHHhCC
Confidence 999999999999999999999999963 37789999999999998766 599999998754
No 18
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.1e-26 Score=154.53 Aligned_cols=129 Identities=27% Similarity=0.396 Sum_probs=119.2
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+++..|..|.||||+ +..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 27 ~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~- 100 (156)
T 1bd8_A 27 VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ----DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT- 100 (156)
T ss_dssp CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT-
T ss_pred cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC-
Confidence 3567788999999999 9999999999999999999987 789999999999999999999999999999998887
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHh
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~ 166 (178)
|.||||+|+..|+.+++++|++. +++ +..|..|.||+++|+..+. .+++++|.++
T Consensus 101 -g~t~L~~A~~~~~~~~v~~Ll~~-~~~--~~~~~~g~t~l~~A~~~~~--~~~v~~Ll~~ 155 (156)
T 1bd8_A 101 -GALPIHLAVQEGHTAVVSFLAAE-SDL--HRRDARGLTPLELALQRGA--QDLVDILQGH 155 (156)
T ss_dssp -SCCHHHHHHHHTCHHHHHHHHTT-SCT--TCCCTTSCCHHHHHHHSCC--HHHHHHHHTT
T ss_pred -CCcHHHHHHHhChHHHHHHHHhc-cCC--CCcCCCCCCHHHHHHHcCc--HHHHHHHHhh
Confidence 99999999999999999999999 766 8899999999999998766 4999999864
No 19
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=5e-27 Score=168.40 Aligned_cols=140 Identities=23% Similarity=0.219 Sum_probs=123.2
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCC--------------CCCCcHHHHHHhcCCHHHHHHHHH
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK--------------SKGVTPLHLAAQGGHLEVMDVLLE 93 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~L~~ 93 (178)
+...|..|+||||+|+..|+.+++++|++.|++++.. + ..|.||||+|+..++.+++++|+.
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ----ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc----ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 3445568999999999999999999999999999987 4 579999999999999999999999
Q ss_pred ---cCCCCccccCCCCCCcHHHHHHHhCC---------HHHHHHHHHcCCCCCC-----CCCCCCCCCcccccccccccH
Q 030377 94 ---RGADIDARTKGACGWTPLHTAAKERK---------KEAVRFLIENGAFLPD-----DINDSRFNPPLHYCPSLEWAY 156 (178)
Q Consensus 94 ---~~~~~~~~~~~~~g~t~l~~a~~~~~---------~~i~~~Ll~~g~~~~~-----~~~~~~g~t~l~~a~~~~~~~ 156 (178)
.|++++..+.. |+||||+|+..++ .+++++|++.|++++. +..|..|.||||+|+..++.
T Consensus 162 ~~~~ga~~~~~d~~--g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~- 238 (260)
T 3jxi_A 162 NGHKQADLRRQDSR--GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI- 238 (260)
T ss_dssp CSSCCCCTTCCCTT--SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH-
T ss_pred ccccCCCCcccCCC--CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH-
Confidence 89999998887 9999999999888 7999999999997743 56899999999999988764
Q ss_pred HHHHHHHHHhhhhcCCCCC
Q 030377 157 EEMMRFQRESFSAGETSYS 175 (178)
Q Consensus 157 ~e~~~~l~~~~~~~~~~~~ 175 (178)
+++++|.++...+.....
T Consensus 239 -~~v~~Ll~~g~~~~~~~~ 256 (260)
T 3jxi_A 239 -GIFQHIIRREIADAAAHH 256 (260)
T ss_dssp -HHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHhCCCcccccc
Confidence 999999999888765543
No 20
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=161.11 Aligned_cols=137 Identities=23% Similarity=0.328 Sum_probs=121.9
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
....+..+.|+||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~--g 87 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP----NEEGITALHNAICGANYSIVDFLITAGANVNSPDSH--G 87 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--C
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--C
Confidence 3445667889999999999999999999999999987 889999999999999999999999999999998887 9
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDIND-SRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~-~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
+||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+....+..+++++|.+...+...
T Consensus 88 ~tpLh~A~~~g~~~~v~~Ll~~ga~~--~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~ 151 (229)
T 2vge_A 88 WTPLHCAASCNDTVICMALVQHGAAI--FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151 (229)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc
Confidence 99999999999999999999999988 6665 699999999933344567999999998877643
No 21
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.94 E-value=1.7e-26 Score=148.02 Aligned_cols=112 Identities=30% Similarity=0.406 Sum_probs=104.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHH
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l 111 (178)
+..|.|+||+|+..|+.+++++|++.|.+++.. +..|+||||+|+..++.+++++|+..|++++..+.. |+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~--g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT----LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH--HITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC----CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT--SCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCcc----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCHH
Confidence 467889999999999999999999999999887 789999999999999999999999999999998887 99999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 030377 112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS 151 (178)
Q Consensus 112 ~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~ 151 (178)
|+|+..|+.+++++|++.|+++ +..|..|.||+++|..
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHhCC
Confidence 9999999999999999999988 8899999999999954
No 22
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=2.3e-27 Score=158.16 Aligned_cols=133 Identities=25% Similarity=0.358 Sum_probs=116.4
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 29 ~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
...+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+ .++.+++++|+..|++++..+.. |.
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~--g~ 78 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA--TL 78 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC----CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT--TC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC--CC
Confidence 456788999999999999999999999999999987 789999999985 89999999999999999998887 99
Q ss_pred c-HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 109 T-PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 109 t-~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
| |||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..+. .+++++|.+...++..
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~~~--~~~v~~Ll~~ga~~~~ 139 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAGARL--DVRDAWGRLPVDLAEELGH--RDVARYLRAAAGGTRG 139 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCS--SCCCTTCCCHHHHHHHHTC--HHHHHHHSSCC-----
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHhCH--HHHHHHHHHcCCCCCc
Confidence 8 999999999999999999999988 8889999999999998766 4999999988776643
No 23
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.94 E-value=1e-25 Score=159.52 Aligned_cols=157 Identities=23% Similarity=0.250 Sum_probs=128.8
Q ss_pred cCCcchhhhhhhHHhhhh-------hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc--ccCCCCCCCcHHHHH
Q 030377 9 QLGPFTLQRKASRKRFFR-------SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA--AWGPKSKGVTPLHLA 79 (178)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~--~~~~~~~~~t~l~~a 79 (178)
..+|+..+.........+ +++.+|..|.||||+|+..|+.+++++|++.++++... ....+..|.||||+|
T Consensus 45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A 124 (236)
T 1ikn_D 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH
Confidence 446777776655433332 34556788999999999999999999999988753211 111267899999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccccC-CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHH
Q 030377 80 AQGGHLEVMDVLLERGADIDARTK-GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEE 158 (178)
Q Consensus 80 ~~~~~~~~~~~L~~~~~~~~~~~~-~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e 158 (178)
+..++.+++++|+..|++++..+. . |.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+
T Consensus 125 ~~~~~~~~v~~Ll~~g~~~~~~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~~~~~--~~ 198 (236)
T 1ikn_D 125 SIHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWGRPS--TR 198 (236)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTT--CCCHHHHHHHTTCHHHHHHHHTTTCCS--CCCCTTCCCGGGGCTTSSC--HH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CcccCCCCCHHHHHHccCc--hH
Confidence 999999999999999999998876 6 999999999999999999999999988 8889999999999998766 59
Q ss_pred HHHHHHHhhhhcC
Q 030377 159 MMRFQRESFSAGE 171 (178)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (178)
++++|.+...++.
T Consensus 199 ~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 199 IQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHHTTSCGGG
T ss_pred HHHHHHHcchhhh
Confidence 9999999877654
No 24
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.94 E-value=2.2e-26 Score=164.67 Aligned_cols=135 Identities=26% Similarity=0.304 Sum_probs=102.7
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
++...+..|.||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-- 189 (253)
T 1yyh_A 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR-- 189 (253)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB----CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--
Confidence 45556677888888888888888888888888887776 677888888888888888888888888888877766
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..++. +++++|.+....+.
T Consensus 190 g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~g~~--~i~~~l~~~~~~~~ 250 (253)
T 1yyh_A 190 EETPLFLAAREGSYETAKVLLDHFANR--DITDHMDRLPRDIAQERMHH--DIVRLLDLEHHHHH 250 (253)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCH--HHHHHHHC------
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCc--cccccCCCCHHHHHHHcCCH--HHHHHHHHHhhhcc
Confidence 888888888888888888888888876 77788888888888776654 88888876665543
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.94 E-value=8.2e-26 Score=159.43 Aligned_cols=136 Identities=25% Similarity=0.222 Sum_probs=72.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc---------CCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW---------GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~---------~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~ 102 (178)
|..|.||||+|+..|+.+++++|++.|++++.... ..+..|.||||+|+..++.+++++|+++|++++..+
T Consensus 72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151 (232)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 44555566666665566666666555555554310 001145566666666666666666666555555555
Q ss_pred CCCCCCcHHHHHHHhCCHHHH----HHHHHcCCCCCC----CCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 103 KGACGWTPLHTAAKERKKEAV----RFLIENGAFLPD----DINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 103 ~~~~g~t~l~~a~~~~~~~i~----~~Ll~~g~~~~~----~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
.. |+||||+|+..|+.+++ ++|++.|++... +..|..|.||||+|+..+. .+++++|.++.....
T Consensus 152 ~~--g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~--~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 152 SL--GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN--IVMFQHLMQKRKHIA 224 (232)
T ss_dssp TT--SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC--HHHHHHHHHHHHHC-
T ss_pred CC--CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC--HHHHHHHHhcCccch
Confidence 44 55666666666655555 555555554311 2445555566666655443 355666655555443
No 26
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=5e-26 Score=153.06 Aligned_cols=128 Identities=23% Similarity=0.299 Sum_probs=118.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHH
Q 030377 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT 113 (178)
Q Consensus 34 ~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~ 113 (178)
.|.||||.|+..|+.+++++|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..+.. |.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHT----DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG--RESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCC----CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC--CCcHHHH
Confidence 5789999999999999999999999998887 789999999999999999999999999999988877 9999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 114 a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...++.
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~ 129 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDV--NEYDWNGGTPLLYAVHGNH--VKCVKMLLESGADPT 129 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHCCCCC--CcCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCC
Confidence 99999999999999999988 8889999999999998766 499999998766654
No 27
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=9.8e-26 Score=158.06 Aligned_cols=136 Identities=26% Similarity=0.306 Sum_probs=112.0
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
++...+..|.||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-- 157 (223)
T 2f8y_A 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR-- 157 (223)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB----CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--
Confidence 45556778888888888888888888888888888877 777888888888888888888888888888887766
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.++.....+
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~~--~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANR--DITDHMDRLPRDIAQERMH--HDIVRLLDEYNLVRSP 219 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCSSCC
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCC--ccccccCCCHHHHHHHhcc--hHHHHHHHHcCCCccc
Confidence 888888888888888888888888877 7778888888888887765 4888888887665443
No 28
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.94 E-value=1.3e-25 Score=158.46 Aligned_cols=144 Identities=27% Similarity=0.252 Sum_probs=120.9
Q ss_pred hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc-cCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccC
Q 030377 25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA-WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103 (178)
Q Consensus 25 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~ 103 (178)
..+++.+|..|+||||+|+..|+.+++++|++.|+++.... ...+..|.||||+|+..++.+++++|+..|++++..+.
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 106 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccC
Confidence 34566788999999999999999999999999998863211 11167899999999999999999999999999988765
Q ss_pred -----------CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccH--HHHHHHHHHhhhhc
Q 030377 104 -----------GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAY--EEMMRFQRESFSAG 170 (178)
Q Consensus 104 -----------~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~--~e~~~~l~~~~~~~ 170 (178)
+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+... .+++++|.+.....
T Consensus 107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI--RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 123999999999999999999999999988 889999999999999877651 23448998877654
No 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.94 E-value=8.8e-26 Score=163.22 Aligned_cols=97 Identities=26% Similarity=0.327 Sum_probs=68.3
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 030377 70 SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 149 (178)
Q Consensus 70 ~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a 149 (178)
..|.||||+|+..++.+++++|+..|++++..+.. .|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 156 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~tpL~~A 232 (282)
T 1oy3_D 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTPLGSA 232 (282)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHH
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCC--cccccCCCCHHHHH
Confidence 35667777777777777777777777777665421 1777777777777777777777777766 66777777777777
Q ss_pred ccccccHHHHHHHHHHhhhhcC
Q 030377 150 PSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 150 ~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
+..+. .+++++|.+...++.
T Consensus 233 ~~~~~--~~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 233 LLRPN--PILARLLRAHGAPEP 252 (282)
T ss_dssp HTSSC--HHHHHHHHHTTCCCC
T ss_pred HHcCC--cHHHHHHHHcCCCcC
Confidence 76654 477777777766654
No 30
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.94 E-value=2.5e-25 Score=156.77 Aligned_cols=134 Identities=37% Similarity=0.482 Sum_probs=98.0
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
++.+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |
T Consensus 66 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g 139 (231)
T 3aji_A 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY--D 139 (231)
T ss_dssp SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--S
T ss_pred CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--C
Confidence 4555667777777777777777777777777777665 666777777777777777777777777777766665 7
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...++.
T Consensus 140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 140 ATAMHRAAAKGNLKMVHILLFYKAST--NIQDTEGNTPLHLACDEER--VEEAKFLVTQGASIY 199 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCSC
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCc--cccCCCCCCHHHHHHHCCC--HHHHHHHHHCCCCCC
Confidence 77777777777777777777777766 6677777788887776655 377777777665543
No 31
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=8.4e-27 Score=159.87 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=117.7
Q ss_pred hcccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCC------HHHHHHHHHcC
Q 030377 27 SVIDTD-DRGWTPLHIGARKGDI----KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH------LEVMDVLLERG 95 (178)
Q Consensus 27 ~~~~~~-~~g~t~l~~A~~~~~~----~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~------~~~~~~L~~~~ 95 (178)
.++..+ ..|+||||+|+..++. +++++|++.|++++.. +..|+||||+|+..++ .+++++|+.+|
T Consensus 29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~----d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G 104 (186)
T 3t8k_A 29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR----TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104 (186)
T ss_dssp SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC----CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC----CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC
Confidence 344455 6799999999999985 5899999999999998 8899999999999886 57899999999
Q ss_pred CCCccccCCCCCC-cHHHHHHHhC-----CHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 96 ADIDARTKGACGW-TPLHTAAKER-----KKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 96 ~~~~~~~~~~~g~-t~l~~a~~~~-----~~~i~~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
++++..+.. |+ ||||+|+..+ +.+++++|++ .|+++ +..|..|.||||+|+..+. .+++++|.+...
T Consensus 105 adin~~d~~--g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~--~~~d~~G~TpL~~A~~~~~--~~~v~~L~~~~~ 178 (186)
T 3t8k_A 105 ADITALYKP--YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL--LIKDKWGLTALEFVKRCQK--PIALKMMEDYIK 178 (186)
T ss_dssp CCSSSCBGG--GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT--TCCCTTSCCHHHHHHTTTC--HHHHHHHHHHHH
T ss_pred CCCCccCCC--cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC--cccCCCCCCHHHHHHHcCC--HHHHHHHHHHHH
Confidence 999999988 99 9999999844 4679999999 99988 8999999999999998766 499999988765
Q ss_pred hcC
Q 030377 169 AGE 171 (178)
Q Consensus 169 ~~~ 171 (178)
.-.
T Consensus 179 ~~~ 181 (186)
T 3t8k_A 179 KYN 181 (186)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 32
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=2.3e-26 Score=164.67 Aligned_cols=134 Identities=28% Similarity=0.337 Sum_probs=120.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCC-------------CCcHHHHHHhcCCHHHHHHHHH---c
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-------------GVTPLHLAAQGGHLEVMDVLLE---R 94 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~L~~---~ 94 (178)
.|..|.||||+|+..|+.+++++|++.|++++.. +.. |.||||+|+..++.+++++|+. .
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR----ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 3467999999999999999999999999999987 443 9999999999999999999999 9
Q ss_pred CCCCccccCCCCCCcHHHHHHH--hCCHH-------HHHHHHHcCCCCCC-----CCCCCCCCCcccccccccccHHHHH
Q 030377 95 GADIDARTKGACGWTPLHTAAK--ERKKE-------AVRFLIENGAFLPD-----DINDSRFNPPLHYCPSLEWAYEEMM 160 (178)
Q Consensus 95 ~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------i~~~Ll~~g~~~~~-----~~~~~~g~t~l~~a~~~~~~~~e~~ 160 (178)
|++++..+.. |+||||+|+. .++.+ ++++|++.|+++.. +..|..|.||||+|+..+. .+++
T Consensus 162 ga~~n~~d~~--g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--~~~v 237 (256)
T 2etb_A 162 PASLEATDSL--GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK--IEIF 237 (256)
T ss_dssp CCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--HHHH
T ss_pred CCCcCccCCC--CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC--HHHH
Confidence 9999998887 9999999999 78888 99999999997632 5689999999999998876 4999
Q ss_pred HHHHHhhhhcCC
Q 030377 161 RFQRESFSAGET 172 (178)
Q Consensus 161 ~~l~~~~~~~~~ 172 (178)
++|.++......
T Consensus 238 ~~Ll~~g~~~~~ 249 (256)
T 2etb_A 238 RHILQREFSGAA 249 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCCCCCCC
Confidence 999998877643
No 33
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.3e-25 Score=151.40 Aligned_cols=132 Identities=36% Similarity=0.457 Sum_probs=119.0
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCc
Q 030377 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT 109 (178)
Q Consensus 30 ~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t 109 (178)
.....+.++|+.|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.|
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t 82 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE----DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA--GMT 82 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCC
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCC
Confidence 34556789999999999999999999999999987 789999999999999999999999999999988877 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 110 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...+..
T Consensus 83 ~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~ 140 (169)
T 2y1l_E 83 PLRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGH--LEIVEVLLKNGADVN 140 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCC
Confidence 999999999999999999999988 8889999999999998766 499999999876654
No 34
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.93 E-value=1.9e-25 Score=154.24 Aligned_cols=137 Identities=26% Similarity=0.412 Sum_probs=119.1
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHH-HcCCCCccccCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL-ERGADIDARTKGA 105 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~-~~~~~~~~~~~~~ 105 (178)
+++..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+ ..+.+++..+..
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~- 105 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ----NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY- 105 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT-
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC-
Confidence 56677889999999999999999999999999999887 788999999999999999999999 566688887777
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCCccccccccccc---HHHHHHHHHHhhhhcC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNPPLHYCPSLEWA---YEEMMRFQRESFSAGE 171 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~g~t~l~~a~~~~~~---~~e~~~~l~~~~~~~~ 171 (178)
|.||||+|+..|+.+++++|++.| +++ +..|..|.||||+|+..+.. ..+++++|.+...++.
T Consensus 106 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 106 -GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp -SCCSHHHHHHTTCHHHHHHHHHHCCCCT--TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred -CCcHHHHHHHcCCHHHHHHHHHcCCCCc--CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 999999999999999999999998 666 88899999999999876542 3689999998876654
No 35
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.93 E-value=2.6e-25 Score=156.68 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=63.4
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCc
Q 030377 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT 109 (178)
Q Consensus 30 ~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t 109 (178)
.+|..|.||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.|
T Consensus 101 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t 174 (231)
T 3aji_A 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK----DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE--GNT 174 (231)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--SCC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCC--CCC
Confidence 34444555555555555555555555555554444 444555555555555555555555555555444444 555
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhh
Q 030377 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF 167 (178)
Q Consensus 110 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~ 167 (178)
|||+|+..|+.+++++|+++|+++ +..|..|.||+++|+.. ...++.++|.+..
T Consensus 175 ~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~--~~~~i~~lL~~~~ 228 (231)
T 3aji_A 175 PLHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVAKGG--LGLILKRLAEGEE 228 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHSCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHhh--HHHHHHHHHcccc
Confidence 555555555555555555555544 44455555555555432 2234455554443
No 36
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.93 E-value=1.9e-25 Score=159.78 Aligned_cols=152 Identities=25% Similarity=0.302 Sum_probs=118.2
Q ss_pred CCcchhhhhhhHHhh-------hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccccCCCCCCCcHHHHHHh
Q 030377 10 LGPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSKGVTPLHLAAQ 81 (178)
Q Consensus 10 ~~~~~~~~~~~~~~~-------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~~~~~~~t~l~~a~~ 81 (178)
.+|+..+......+. ..+++.+|..|+||||+|+..|+.+++++|++.+. +++.. +..|.||||+|+.
T Consensus 58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR----MHDGTTPLILAAR 133 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC----CTTCCCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc----CCCCCcHHHHHHH
Confidence 456665554432221 23455567778888888888888888888888776 66665 6778888888888
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHH
Q 030377 82 GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 161 (178)
Q Consensus 82 ~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~ 161 (178)
.++.+++++|+..|++++..+.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+.. ++++
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~~~~--~~v~ 207 (253)
T 1yyh_A 134 LAVEGMLEDLINSHADVNAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAREGSY--ETAK 207 (253)
T ss_dssp HTCSSHHHHHHHTTCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCH--HHHH
T ss_pred cChHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHCCCH--HHHH
Confidence 88888888888888888887776 889999999999999999999999887 77888899999999877654 8899
Q ss_pred HHHHhhhhcC
Q 030377 162 FQRESFSAGE 171 (178)
Q Consensus 162 ~l~~~~~~~~ 171 (178)
+|.+...+..
T Consensus 208 ~Ll~~ga~~~ 217 (253)
T 1yyh_A 208 VLLDHFANRD 217 (253)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCcc
Confidence 9988876654
No 37
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=159.47 Aligned_cols=130 Identities=28% Similarity=0.324 Sum_probs=66.1
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++.. .. |
T Consensus 29 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~--g 101 (261)
T 2xai_A 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV----TADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SD--L 101 (261)
T ss_dssp SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CT--T
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CC--C
Confidence 3444555555555555555555555555555555544 445555555555555555555555555554422 12 4
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~ 158 (261)
T 2xai_A 102 ASPIHEAARRGHVECVNSLIAYGGNI--DHKISHLGTPLYLACENQQ--RACVKKLLESGA 158 (261)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTBCHHHHHHHTTC--HHHHHHHHHHTC
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCC--CcCCCCCCCHHHHHHHhCC--HHHHHHHHHcCC
Confidence 45555555555555555555555544 4444455555555544433 245555544433
No 38
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=7.1e-26 Score=160.88 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=117.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHH
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l 111 (178)
+..|.|+||.|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+.. |+|||
T Consensus 34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~--g~tpL 107 (239)
T 1ycs_B 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP----NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD--GWTPL 107 (239)
T ss_dssp ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC----CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHH
T ss_pred CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHH
Confidence 356789999999999999999999999999988 889999999999999999999999999999998887 99999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCC-CcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFN-PPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 112 ~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~-t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|+|+..|+.+++++|++.|+++ +..+..|. ||+|+|.....+..+++++|.+...+...
T Consensus 108 ~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 108 HCAASCNNVQVCKFLVESGAAV--FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT--TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCc--ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence 9999999999999999999988 77787777 99999944333445999999998777643
No 39
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.93 E-value=2.3e-26 Score=161.50 Aligned_cols=132 Identities=22% Similarity=0.380 Sum_probs=113.9
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCC
Q 030377 29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER-GADIDARTKGACG 107 (178)
Q Consensus 29 ~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~g 107 (178)
...+..|.||||+|+..|+.+++++|++.|++++.. +..|+||||+|+..++.+++++|+.. |++++..+.. |
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~--g 140 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL----DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL--G 140 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTT--S
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCC--C
Confidence 345678899999999999999999999999999987 78999999999999999999999998 9999998887 9
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
+||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+ ..++++.+.+.....
T Consensus 141 ~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~--~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 141 DTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLAFDMATNAA--CASLLKKKQGTDAVR 199 (222)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCS--CCCCTTSCCHHHHCCSHH--HHHHHC---------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCHHHHhcchh--HHHHHHHHhccchhh
Confidence 99999999999999999999999988 889999999999998754 568888888766554
No 40
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=161.15 Aligned_cols=134 Identities=25% Similarity=0.340 Sum_probs=108.9
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-Ccccccc----------------------------------CCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAW----------------------------------GPKSKG 72 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~----------------------------------~~~~~~ 72 (178)
++.+|..|+||||+|+..|+.+++++|++.|+ +++.... ..+..|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG 183 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence 67789999999999999999999999999997 6554421 013347
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCCccccccc
Q 030377 73 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPS 151 (178)
Q Consensus 73 ~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~ 151 (178)
.||||+|+..++.+++++|+..|++++..+.. |+||||+|+..|+.+++++|++ .|+++ +..|..|.|||++|+.
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~--G~TpLh~A~~~g~~~iv~~Ll~~~gad~--~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDD--GSTALMCACEHGHKEIAGLLLAVPSCDI--SLTDRDGSTALMVALD 259 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHTSTTCCT--TCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC--CCCHHHHHHHCCCHHHHHHHHhcCCCCC--cCcCCCCCCHHHHHHH
Confidence 78888888888888888888888888887777 8888888888888888888888 78877 7788888888888887
Q ss_pred ccccHHHHHHHHHHhh
Q 030377 152 LEWAYEEMMRFQRESF 167 (178)
Q Consensus 152 ~~~~~~e~~~~l~~~~ 167 (178)
.+. .+++++|.+..
T Consensus 260 ~g~--~~iv~~Ll~~~ 273 (276)
T 4hbd_A 260 AGQ--SEIASMLYSRM 273 (276)
T ss_dssp HTC--HHHHHHHHHHC
T ss_pred cCC--HHHHHHHHhcc
Confidence 765 48888887654
No 41
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.93 E-value=2.7e-25 Score=160.70 Aligned_cols=135 Identities=29% Similarity=0.355 Sum_probs=115.5
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----------
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD---------- 97 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~---------- 97 (178)
++.++..|+||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..++.+++++|+..+++
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 113 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA----ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC----CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHh
Confidence 6778889999999999999999999999999999887 78899999999999999999999987654
Q ss_pred -------------------------------------CccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Q 030377 98 -------------------------------------IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS 140 (178)
Q Consensus 98 -------------------------------------~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~ 140 (178)
++..+.. |.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~ 189 (282)
T 1oy3_D 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD--GHTPLHVAVIHKDAEMVRLLRDAGADL--NKPEP 189 (282)
T ss_dssp ------------------------------CCCGGGGTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCT
T ss_pred hcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC--CcCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCC
Confidence 5555555 999999999999999999999999987 66664
Q ss_pred -CCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 141 -RFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 141 -~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
.|.||||+|+..+. .+++++|.+...++..
T Consensus 190 ~~g~tpL~~A~~~~~--~~~v~~Ll~~gad~~~ 220 (282)
T 1oy3_D 190 TCGRTPLHLAVEAQA--ASVLELLLKAGADPTA 220 (282)
T ss_dssp TTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTC
T ss_pred CCCcCHHHHHHHcCC--HHHHHHHHHcCCCCcc
Confidence 48999999987765 4999999988766543
No 42
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.93 E-value=7.5e-26 Score=163.47 Aligned_cols=130 Identities=28% Similarity=0.348 Sum_probs=118.8
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCC--------------CCCcHHHHHHhcCCHHHHHHHHH---
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS--------------KGVTPLHLAAQGGHLEVMDVLLE--- 93 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~L~~--- 93 (178)
.|..|.||||+|+..|+.+++++|++.|++++.. +. .|.||||+|+..++.+++++|+.
T Consensus 97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (273)
T 2pnn_A 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAA----ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172 (273)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc----ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 5678999999999999999999999999999987 43 79999999999999999999999
Q ss_pred cCCCCccccCCCCCCcHHHHHHHhCC---------HHHHHHHHHcCCCCCC-----CCCCCCCCCcccccccccccHHHH
Q 030377 94 RGADIDARTKGACGWTPLHTAAKERK---------KEAVRFLIENGAFLPD-----DINDSRFNPPLHYCPSLEWAYEEM 159 (178)
Q Consensus 94 ~~~~~~~~~~~~~g~t~l~~a~~~~~---------~~i~~~Ll~~g~~~~~-----~~~~~~g~t~l~~a~~~~~~~~e~ 159 (178)
.|++++..+.. |+||||+|+..|+ .+++++|++.|++++. +..|..|.||||+|+..+. .++
T Consensus 173 ~gad~~~~d~~--g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~--~~i 248 (273)
T 2pnn_A 173 QPADISARDSV--GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK--IGV 248 (273)
T ss_dssp CCCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC--HHH
T ss_pred CCCCceeeCCC--CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh--HHH
Confidence 99999998887 9999999999998 8999999999998732 3589999999999998876 499
Q ss_pred HHHHHHhhh
Q 030377 160 MRFQRESFS 168 (178)
Q Consensus 160 ~~~l~~~~~ 168 (178)
+++|.+...
T Consensus 249 v~~Ll~~ga 257 (273)
T 2pnn_A 249 LAYILQREI 257 (273)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHCCC
Confidence 999999888
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.93 E-value=1.1e-25 Score=159.41 Aligned_cols=154 Identities=22% Similarity=0.263 Sum_probs=129.5
Q ss_pred ccCCcchhhhhhhHHhhh-----------hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHH
Q 030377 8 EQLGPFTLQRKASRKRFF-----------RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPL 76 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l 76 (178)
...+|+..+......... .+++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.|||
T Consensus 7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L 82 (236)
T 1ikn_D 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR----DFRGNTPL 82 (236)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC----CTTCCCHH
T ss_pred CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHH
Confidence 345666666654432211 146678889999999999999999999999999999987 78999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCC------CccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC-CCCCccccc
Q 030377 77 HLAAQGGHLEVMDVLLERGAD------IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS-RFNPPLHYC 149 (178)
Q Consensus 77 ~~a~~~~~~~~~~~L~~~~~~------~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~-~g~t~l~~a 149 (178)
|+|+..++.+++++|+..+.+ ++..+.. |.||||+|+..|+.+++++|++.|+++ +..+. .|.||||+|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYN--GHTCLHLASIHGYLGIVELLVSLGADV--NAQEPCNGRTALHLA 158 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT--CCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCCHHHHH
Confidence 999999999999999999875 3444555 999999999999999999999999988 77777 999999999
Q ss_pred ccccccHHHHHHHHHHhhhhcC
Q 030377 150 PSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 150 ~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
+..+. .+++++|.+...+..
T Consensus 159 ~~~~~--~~~v~~Ll~~ga~~~ 178 (236)
T 1ikn_D 159 VDLQN--PDLVSLLLKCGADVN 178 (236)
T ss_dssp HHTTC--HHHHHHHHTTTCCSC
T ss_pred HHcCC--HHHHHHHHHcCCCCC
Confidence 98766 499999999876654
No 44
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.93 E-value=2.7e-25 Score=157.36 Aligned_cols=129 Identities=25% Similarity=0.386 Sum_probs=75.5
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
+...+..|.||||+|+..++.+++++|++.|++++... ...|.||||+|+..++.+++++|+..|++++..+.. |
T Consensus 109 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g 183 (241)
T 1k1a_A 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD---IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--G 183 (241)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT--S
T ss_pred ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc---ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--C
Confidence 33445556666666666666666666666666655541 145666666666666666666666666666655555 6
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHH
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRE 165 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~ 165 (178)
.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+ ..++++.|.+
T Consensus 184 ~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~~~~--~~~i~~~l~~ 237 (241)
T 1k1a_A 184 SSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPLMVARSRR--VIDILRGKAT 237 (241)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCTTTTCSSHH--HHHHHTC---
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCC--CCcCCCCCCHHHHHHhcC--cHHHHhhhcc
Confidence 66666666666666666666666655 555666666666665443 2355555543
No 45
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.93 E-value=5.6e-25 Score=160.50 Aligned_cols=136 Identities=29% Similarity=0.405 Sum_probs=92.8
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC--
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG-- 104 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-- 104 (178)
+++..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 140 (299)
T 1s70_B 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP----DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140 (299)
T ss_dssp CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence 35556667777777777777777777777777777766 566777777777777777777777777666544321
Q ss_pred --------------------------------------------------------CCCCcHHHHHHHhCCHHHHHHHHH
Q 030377 105 --------------------------------------------------------ACGWTPLHTAAKERKKEAVRFLIE 128 (178)
Q Consensus 105 --------------------------------------------------------~~g~t~l~~a~~~~~~~i~~~Ll~ 128 (178)
..|.||||+|+..|+.+++++|++
T Consensus 141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 220 (299)
T 1s70_B 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220 (299)
T ss_dssp CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 125567777777777777777777
Q ss_pred cCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 129 NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 129 ~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
.|+++ +..|..|.||||+|+..+. .+++++|.+...++
T Consensus 221 ~g~d~--~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~gad~ 258 (299)
T 1s70_B 221 ARYDV--NIKDYDGWTPLHAAAHWGK--EEACRILVENLCDM 258 (299)
T ss_dssp TTCCT--TCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCT
T ss_pred cCCCC--CCcCCCCCcHHHHHHhcCC--HHHHHHHHHcCCCC
Confidence 77766 6667777777777766554 37777777665544
No 46
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.93 E-value=7.6e-25 Score=153.91 Aligned_cols=130 Identities=30% Similarity=0.408 Sum_probs=97.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEG--MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~--~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
.+..|.||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~ 141 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI----TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF--NQ 141 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT--SC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC----CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCC--CC
Confidence 5567777888888777777777777777 566655 667778888888888888888888887777777666 77
Q ss_pred cHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCCcccccccccccHHHHHHHHH-Hhhhhc
Q 030377 109 TPLHTAAKERKKEAVRFLIENG-AFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQR-ESFSAG 170 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~-~~~~~~ 170 (178)
||||+|+..|+.+++++|++.| +++ +..|..|.||||+|+..+. .+++++|. +...++
T Consensus 142 t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~~ga~~ 201 (228)
T 2dzn_A 142 IPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPLFHALAEGH--GDAAVLLVEKYGAEY 201 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCS--CCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHCCCS
T ss_pred CHHHHHHHcCCHHHHHHHHhcCcccc--cCcCCCCCCHHHHHHHcCC--HHHHHHHHHhcCCCC
Confidence 8888888888888888888877 655 6677778888888876655 37777777 544443
No 47
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=2e-25 Score=149.31 Aligned_cols=127 Identities=26% Similarity=0.371 Sum_probs=116.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHH
Q 030377 33 DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH 112 (178)
Q Consensus 33 ~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~ 112 (178)
+...++||.|+..|+.+++++|++.|.+++.. +..|.||||+|+. ++.+++++|+..|++++..+.. |.||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~ 75 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQ----NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRT--GFAVIH 75 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC----CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTT--SCCHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCcccc----CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCC--CCCHHH
Confidence 35679999999999999999999999999887 7899999999999 9999999999999999988877 999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 113 TAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 113 ~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+.....
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~ 129 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADV--NIEDNEGNLPLHLAAKEGH--LRVVEFLVKHTASN 129 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSCCC
T ss_pred HHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--HHHHHHHHHccCCC
Confidence 999999999999999999988 8889999999999998766 49999999987764
No 48
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.93 E-value=8.5e-25 Score=153.26 Aligned_cols=153 Identities=25% Similarity=0.297 Sum_probs=125.9
Q ss_pred cCCcchhhhhhhHHhh-------hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccccCCCCCCCcHHHHHH
Q 030377 9 QLGPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGM-DVNVAAWGPKSKGVTPLHLAA 80 (178)
Q Consensus 9 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~-~~~~~~~~~~~~~~t~l~~a~ 80 (178)
..+|+..+......+. ..++...|..|.||||+|+..|+.+++++|++.++ +++.. +..|.||||+|+
T Consensus 25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~A~ 100 (223)
T 2f8y_A 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR----MHDGTTPLILAA 100 (223)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC----CTTCCCHHHHHH
T ss_pred CCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCCCcHHHHHH
Confidence 3456666655442222 23455677889999999999999999999999886 66665 778899999999
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHH
Q 030377 81 QGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMM 160 (178)
Q Consensus 81 ~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~ 160 (178)
..++.+++++|+..|++++..+.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v 174 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDDL--GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPLFLAAREGS--YETA 174 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTC--HHHH
T ss_pred HhCcHHHHHHHHHcCCCCcCcCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCcCHHHHHHHcCC--HHHH
Confidence 999999999999999999888877 999999999999999999999999987 7888999999999987765 4999
Q ss_pred HHHHHhhhhcC
Q 030377 161 RFQRESFSAGE 171 (178)
Q Consensus 161 ~~l~~~~~~~~ 171 (178)
++|.+...++.
T Consensus 175 ~~Ll~~ga~~~ 185 (223)
T 2f8y_A 175 KVLLDHFANRD 185 (223)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHcCCCCc
Confidence 99998876654
No 49
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=3.7e-25 Score=146.89 Aligned_cols=126 Identities=33% Similarity=0.391 Sum_probs=115.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHH
Q 030377 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 114 (178)
Q Consensus 35 g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a 114 (178)
..++|+.|+..|+.+++++|++.|.+++. +..|.||||+|+..++.+++++|+..|++++..+.. |+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A 74 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-----DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV--DRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-----CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--CCCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHH
Confidence 45899999999999999999999988763 678999999999999999999999999999988877 99999999
Q ss_pred HHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 115 AKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 115 ~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...+..
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~~ 127 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADV--NAKDMLKMTALHWATEHNH--QEVVELLIKYGADVH 127 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCTT
T ss_pred HHcChHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCcc
Confidence 9999999999999999988 8889999999999998765 499999999876654
No 50
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.93 E-value=1.3e-25 Score=168.34 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=120.4
Q ss_pred CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-----CccccC
Q 030377 31 TDDRGWTPLHIGARKG--DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD-----IDARTK 103 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~-----~~~~~~ 103 (178)
.|..|.||||+|+..| +.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++ ++..+.
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK----DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence 7778999999999999 999999999999999988 88999999999999999999999999988 888877
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhh
Q 030377 104 GACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA 169 (178)
Q Consensus 104 ~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~ 169 (178)
. |+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+....
T Consensus 210 ~--g~t~L~~A~~~g~~~~v~~Ll~~gad~--~~~d~~g~tpL~~A~~~g~--~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 210 Q--GNSHLHWAILINWEDVAMRFVEMGIDV--NMEDNEHTVPLYLSVRAAM--VLLTKELLQKTDV 269 (364)
T ss_dssp T--CCCTTHHHHTTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHTCC--HHHHHHHHHHSCH
T ss_pred C--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHhCh--HHHHHHHHHcCCc
Confidence 7 999999999999999999999999988 8899999999999998866 4999999998544
No 51
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.93 E-value=1e-24 Score=154.23 Aligned_cols=119 Identities=29% Similarity=0.460 Sum_probs=79.3
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
+...+..|.||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |
T Consensus 104 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g 177 (237)
T 3b7b_A 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR----DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH--G 177 (237)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT--C
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc----CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC--C
Confidence 3345556667777777777777777777766666655 566667777777777777777777766666666555 6
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccc
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW 154 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~ 154 (178)
.||||+|+..|+.+++++|+++|+++ +..|..|.||+++|+..+.
T Consensus 178 ~t~L~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 178 DSPLHIAARENRYDCVVLFLSRDSDV--TLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHSCTTCH
T ss_pred CCHHHHHHHhCCHhHHHHHHHcCCCC--CccCCCCCCHHHHHHHHHH
Confidence 67777777777777777777776665 5666667777777665543
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.93 E-value=8.8e-26 Score=161.62 Aligned_cols=138 Identities=26% Similarity=0.227 Sum_probs=119.0
Q ss_pred CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCccccc-------cCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcc
Q 030377 31 TDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAA-------WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA 100 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~---~~~~~v~~ll~~~~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~ 100 (178)
.|..|+||||+|+.. |+.+++++|++.|++++... ...+..|.||||+|+..++.+++++|++.|++++.
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 118 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 789999999999999 99999999999987765321 01136799999999999999999999999999988
Q ss_pred ccCC-----------CCCCcHHHHHHHhCCHHHHHHHHH---cCCCCCCCCCCCCCCCcccccccccccHHH-------H
Q 030377 101 RTKG-----------ACGWTPLHTAAKERKKEAVRFLIE---NGAFLPDDINDSRFNPPLHYCPSLEWAYEE-------M 159 (178)
Q Consensus 101 ~~~~-----------~~g~t~l~~a~~~~~~~i~~~Ll~---~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e-------~ 159 (178)
.+.. .+|.||||+|+..|+.+++++|++ .|+++ +..|..|.||||+|+..+....+ +
T Consensus 119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~--n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i 196 (256)
T 2etb_A 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL--EATDSLGNTVLHALVMIADNSPENSALVIHM 196 (256)
T ss_dssp CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc--CccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence 7652 138999999999999999999999 89988 88999999999999974444456 9
Q ss_pred HHHHHHhhhhc
Q 030377 160 MRFQRESFSAG 170 (178)
Q Consensus 160 ~~~l~~~~~~~ 170 (178)
+++|.+...+.
T Consensus 197 v~~Ll~~ga~~ 207 (256)
T 2etb_A 197 YDGLLQMGARL 207 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHcCCCc
Confidence 99999988776
No 53
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=158.32 Aligned_cols=130 Identities=28% Similarity=0.325 Sum_probs=73.2
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+ . |
T Consensus 85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~--g 157 (285)
T 3d9h_A 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV----TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-D--L 157 (285)
T ss_dssp SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-T--T
T ss_pred CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-C--C
Confidence 4445556666666666666666666666666666655 4555566666666555555555555555554322 2 5
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+.. +++++|.+...
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~~--~~v~~Ll~~ga 214 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLIAYGGNI--DHKISHLGTPLYLACENQQR--ACVKKLLESGA 214 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCT--TCCBTTTBCHHHHHHHTTCH--HHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCcH--HHHHHHHHCCC
Confidence 55555555555555555555555544 44555555555555544432 55555555443
No 54
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.93 E-value=8.9e-25 Score=150.87 Aligned_cols=148 Identities=23% Similarity=0.333 Sum_probs=126.9
Q ss_pred cCCcchhhhhhhHHhh-------hhhcccCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCccccccCCCCCCCcHHHHHH
Q 030377 9 QLGPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGDIKLVKQLL-DEGMDVNVAAWGPKSKGVTPLHLAA 80 (178)
Q Consensus 9 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~~~~~~~t~l~~a~ 80 (178)
..+|+..+......+. ..+++.++..|.||||+|+..|+.+++++|+ ..+.+++.. +..|.||||+|+
T Consensus 39 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~~g~t~L~~A~ 114 (201)
T 3hra_A 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH----NRYGGNALIPAA 114 (201)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC----CTTSCCSHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc----cCCCCcHHHHHH
Confidence 3467766665543222 2346667889999999999999999999999 555688877 788999999999
Q ss_pred hcCCHHHHHHHHHcC-CCCccccCCCCCCcHHHHHHHhCC-----HHHHHHHHHcCCCCCCCCCCCCCCCcccccccccc
Q 030377 81 QGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERK-----KEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW 154 (178)
Q Consensus 81 ~~~~~~~~~~L~~~~-~~~~~~~~~~~g~t~l~~a~~~~~-----~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~ 154 (178)
..++.+++++|+..| ++++..+.. |.||||+|+..++ .+++++|++.|+++ +..|..|.||+|+|+..+.
T Consensus 115 ~~~~~~~v~~Ll~~g~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 115 EKGHIDNVKLLLEDGREDIDFQNDF--GYTALIEAVGLREGNQLYQDIVKLLMENGADQ--SIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HTTCHHHHHHHHHHCCCCTTCCCTT--SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHcCCCCcCCCCCC--CCCHHHHHHHhccchhhHHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHcCC
Confidence 999999999999998 899988887 9999999999998 99999999999988 8899999999999998766
Q ss_pred cHHHHHHHHHHh
Q 030377 155 AYEEMMRFQRES 166 (178)
Q Consensus 155 ~~~e~~~~l~~~ 166 (178)
.+++++|.++
T Consensus 191 --~~~~~~Ll~~ 200 (201)
T 3hra_A 191 --TEISKILAQY 200 (201)
T ss_dssp --HHHHHHHHTC
T ss_pred --HhHHHHHHhc
Confidence 4999999864
No 55
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.93 E-value=2.4e-24 Score=152.49 Aligned_cols=129 Identities=29% Similarity=0.394 Sum_probs=69.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC----CccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCC
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDEGM----DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGAC 106 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~~~----~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~ 106 (178)
+..|.||||+|+..++.+++++|++.++ +++.. +..|.||||+|+..++.+++++|+..|++++..+ ..
T Consensus 76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-- 149 (241)
T 1k1a_A 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR----NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS-- 149 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTT--
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc----CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC--
Confidence 3344444444444444444444444433 22222 3445555555555555555566655555555544 33
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...++
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~ 209 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQHGANV--NAQMYSGSSALHSASGRGL--LPLVRTLVRSGADS 209 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCBCTTSCBHHHHHHHHTC--HHHHHHHHHTTCCT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--HHHHHHHHhcCCCC
Confidence 566666666666666666666666655 5556666666666665444 36666666655443
No 56
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.93 E-value=2.2e-24 Score=151.59 Aligned_cols=136 Identities=31% Similarity=0.394 Sum_probs=118.3
Q ss_pred hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcC--CCCcccc
Q 030377 25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG--ADIDART 102 (178)
Q Consensus 25 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~--~~~~~~~ 102 (178)
.......|..|.||||+|+..|+.+++++|++.|++++... ..+..|.||||+|+..++.+++++|+..| .+++..+
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 104 (228)
T 2dzn_A 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT 104 (228)
T ss_dssp GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG-CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC
T ss_pred ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc-cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC
Confidence 33445588999999999999999999999999994443321 01678999999999999999999999998 7777766
Q ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhh
Q 030377 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESF 167 (178)
Q Consensus 103 ~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~ 167 (178)
.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+..
T Consensus 105 ~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g 163 (228)
T 2dzn_A 105 NQ--GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLHRAASVGS--LKLIELLCGLG 163 (228)
T ss_dssp TT--CCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTC--HHHHHHHHTTT
T ss_pred cC--CCCHHHHHHHcCCHhHHHHHHHcCCCc--cccCCCCCCHHHHHHHcCC--HHHHHHHHhcC
Confidence 66 999999999999999999999999988 8889999999999998766 49999999887
No 57
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.93 E-value=1.5e-24 Score=153.32 Aligned_cols=154 Identities=26% Similarity=0.402 Sum_probs=127.1
Q ss_pred cCCcchhhhhhhHHhh-------hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHh
Q 030377 9 QLGPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQ 81 (178)
Q Consensus 9 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~ 81 (178)
..+|+..+......+. ..+++..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+.
T Consensus 11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK----DAEGSTCLHLAAK 86 (237)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC----CTTSCCHHHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC----CCCCCcHHHHHHH
Confidence 3466666655443222 2345667788999999999999999999999999988877 7889999999999
Q ss_pred cCCHHHHHHHHHcC-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHH
Q 030377 82 GGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMM 160 (178)
Q Consensus 82 ~~~~~~~~~L~~~~-~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~ 160 (178)
.++.+++++|+..+ .+++..+.. |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..+. .+++
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~~ 160 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDG--GWTPMIWATEYKHVDLVKLLLSKGSDI--NIRDNEENICLHWAAFSGC--VDIA 160 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHCC--HHHH
T ss_pred cCCHHHHHHHHhCCCCCcccCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHCCC--HHHH
Confidence 99999999999988 778877776 999999999999999999999999987 7788899999999987765 4999
Q ss_pred HHHHHhhhhcCC
Q 030377 161 RFQRESFSAGET 172 (178)
Q Consensus 161 ~~l~~~~~~~~~ 172 (178)
++|.+...+...
T Consensus 161 ~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 161 EILLAAKCDLHA 172 (237)
T ss_dssp HHHHTTTCCTTC
T ss_pred HHHHHcCCCCCC
Confidence 999988766543
No 58
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.93 E-value=1.7e-25 Score=162.86 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=94.6
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++.+|..|.||||+|+..|+.+++++|++.|++++.. .|.||||+|+..++.+++++|+..|++++..+..
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-- 94 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK-- 94 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC------TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT--
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--
Confidence 35667777777777777777777777777777776643 3677777777777777777777777777776665
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC-CCcccccccccccHHHHHHHHHHhhhhc
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g-~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
|+||||+|+..|+.+++++|++.|+++ +..+..| .||||+|+..+. .+++++|.+.....
T Consensus 95 g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~~t~L~~A~~~~~--~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 95 GNTALYYAVDSGNMQTVKLFVKKNWRL--MFYGKTGWKTSFYHAVMLND--VSIVSYFLSEIPST 155 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCGGG--GGCSSSGGGSHHHHHHHTTC--HHHHHHHHTTSCTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCC--CccCCCCCCCHHHHHHHcCC--HHHHHHHHhCCCcc
Confidence 777777777777777777777777766 6666667 577777776554 37777777665443
No 59
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=1.1e-24 Score=148.17 Aligned_cols=129 Identities=26% Similarity=0.360 Sum_probs=115.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHH
Q 030377 33 DRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111 (178)
Q Consensus 33 ~~g~t~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l 111 (178)
..+.++|+.|+..|+.+++++|++. +.+++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.|||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L 76 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG----DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG--DDTPL 76 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC--CCCHH
Confidence 4678999999999999999999998 4567766 788999999999999999999999999999998877 99999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 112 ~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...+..
T Consensus 77 ~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 77 HLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPLHYACFWGQ--DQVAEDLVANGALVS 132 (179)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCcc
Confidence 9999999999999999999988 8889999999999998766 499999999876654
No 60
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=155.65 Aligned_cols=133 Identities=27% Similarity=0.357 Sum_probs=91.4
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++.+|..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 61 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-- 133 (261)
T 2xai_A 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-----SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH-- 133 (261)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-----CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT--
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCC--
Confidence 45556677777777777777777777777777776642 34667777777777777777777777777766665
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|.||||+|+..|+.+++++|++.|+++ + .+..|.||||+|+..+. .+++++|.+...++.
T Consensus 134 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~-~~~~g~t~Lh~A~~~~~--~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 134 LGTPLYLACENQQRACVKKLLESGADV--N-QGKGQDSPLHAVARTAS--EELACLLMDFGADTQ 193 (261)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHTCCT--T-CCBTTBCHHHHHHHHTC--HHHHHHHHHTTCCTT
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCC--C-CCCCCCChHHHHHHcCC--HHHHHHHHHcCCCCC
Confidence 777777777777777777777777766 3 25666777777765544 377777776655443
No 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=8e-25 Score=147.84 Aligned_cols=128 Identities=26% Similarity=0.276 Sum_probs=115.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHH
Q 030377 35 GWTPLHIGARKGDIKLVKQLLDEGMD-VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT 113 (178)
Q Consensus 35 g~t~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~ 113 (178)
+.+|||.|+..|+.+.++.+++.+.+ ++.. +..|.||||+|+..++.+++++|++.|++++..+.. |.||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~ 75 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP----DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE--RESALSL 75 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC----CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--CCCHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhccc--CCCHHHH
Confidence 46899999999999999999999877 5665 788999999999999999999999999999998887 9999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 114 a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...+...
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 76 ASTGGYTDIVGLLLERDVDI--NIYDWNGGTPLLYAVRGNH--VKCVEALLARGADLTT 130 (172)
T ss_dssp HHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCTTC
T ss_pred HHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccc
Confidence 99999999999999999988 8889999999999998766 4999999988766543
No 62
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=1.3e-25 Score=153.37 Aligned_cols=113 Identities=35% Similarity=0.436 Sum_probs=105.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCCCc
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWT 109 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~g~t 109 (178)
.+..|.||||+|+..|+.++++.|++ |.+++.. +..|+||||+|+..++.+++++|+.+|++++..+ .. |+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~--g~t 112 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLT 112 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--SCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC--CCC
Confidence 35678999999999999999999999 9999987 8899999999999999999999999999999887 66 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc
Q 030377 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL 152 (178)
Q Consensus 110 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~ 152 (178)
|||+|+..|+.+++++|++.|+++ +..|..|.||+|+|+..
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVELGADI--EVEDERGLTALELAREI 153 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHcCCCC--cCCCCCCCCHHHHHHHh
Confidence 999999999999999999999988 88999999999999753
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=5.8e-25 Score=147.57 Aligned_cols=131 Identities=27% Similarity=0.402 Sum_probs=116.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCc
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEG-MDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWT 109 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t 109 (178)
.|..|.++|+.|+..|+.++++.|++.+ .+++.. +..|.||||+|+..++.+++++|+..|++++..+.. |+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t 77 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG--GLV 77 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc----ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCC--CCC
Confidence 4677889999999999999999999854 444444 677899999999999999999999999999998887 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 110 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...++.
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~~ 135 (165)
T 3twr_A 78 PLHNACSYGHYEVAELLVKHGAVV--NVADLWKFTPLHEAAAKGK--YEICKLLLQHGADPT 135 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTT
T ss_pred HHHHHHHcCcHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCc
Confidence 999999999999999999999988 8889999999999998776 499999998866554
No 64
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=157.42 Aligned_cols=134 Identities=26% Similarity=0.437 Sum_probs=121.2
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
.+..+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-- 124 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII----TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD-- 124 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTT--
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC--
Confidence 35667889999999999999999999999999999988 889999999999999999999999999999988887
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|.||||+|+..|+.+++++|++.|+++ +. +..|.||||+|+..+.. +++++|.+...+..
T Consensus 125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~-~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~ 184 (285)
T 3d9h_A 125 WHTPLFNACVSGSWDCVNLLLQHGASV--QP-ESDLASPIHEAARRGHV--ECVNSLIAYGGNID 184 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCS--SC-SCTTSCHHHHHHHHTCH--HHHHHHHHTTCCTT
T ss_pred CCCHHHHHHHcCHHHHHHHHHHCCCCC--CC-CCCCCCHHHHHHHcCCH--HHHHHHHHCCCCCC
Confidence 999999999999999999999999987 43 34599999999987664 99999998776554
No 65
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.92 E-value=4.1e-24 Score=155.91 Aligned_cols=164 Identities=24% Similarity=0.343 Sum_probs=124.3
Q ss_pred cCCcchhhhhhhHHh-------hhhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccC--------------
Q 030377 9 QLGPFTLQRKASRKR-------FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG-------------- 67 (178)
Q Consensus 9 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-------------- 67 (178)
..+|+..+......+ ...+++..|..|.||||+|+..|+.+++++|+++|++++.....
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 152 (299)
T 1s70_B 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152 (299)
T ss_dssp CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchH
Confidence 346666665544222 22446678889999999999999999999999999887754210
Q ss_pred ------------------------------------------CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 68 ------------------------------------------PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 68 ------------------------------------------~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 153 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~- 231 (299)
T 1s70_B 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD- 231 (299)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT-
T ss_pred HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC-
Confidence 1245789999999999999999999999999998877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCCCCCCCC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSES 178 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 178 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|... ....+.+++.+.......++..+|
T Consensus 232 -g~tpL~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~t~l~~A~~~--~~~~l~~l~~~~~~~~~~~~~k~s 299 (299)
T 1s70_B 232 -GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVADED--ILGYLEELQKKQNLLHSEKREKKS 299 (299)
T ss_dssp -CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTTTSCCSG--GGHHHHHHHHHTTSCC--------
T ss_pred -CCcHHHHHHhcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHH--HHHHHHHHHHHHhhhhcccccccC
Confidence 999999999999999999999999988 88999999999999753 223444444444444444444443
No 66
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=3.4e-25 Score=157.89 Aligned_cols=129 Identities=31% Similarity=0.392 Sum_probs=116.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCCCc
Q 030377 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGACGWT 109 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~g~t 109 (178)
.+..|.||||+|+..|+.++++.|++ |++++.. +..|.||||+|+..++.+++++|+.+|++++..+ .. |+|
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~--g~t 113 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLT 113 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB----CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS--CCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc----CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC--CCC
Confidence 34578999999999999999999999 9999988 8899999999999999999999999999999887 66 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccc--------------cccHHHHHHHHHHhhh
Q 030377 110 PLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSL--------------EWAYEEMMRFQRESFS 168 (178)
Q Consensus 110 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~--------------~~~~~e~~~~l~~~~~ 168 (178)
|||+|+..|+.+++++|++.|+++ +..|..|.||||+|+.. ..+..+++++|.+...
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGADI--EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 999999999999999999999988 88999999999999743 2256789999988643
No 67
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.92 E-value=3e-24 Score=164.39 Aligned_cols=132 Identities=32% Similarity=0.508 Sum_probs=78.0
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 29 ~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
+..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+.. |.
T Consensus 239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~ 312 (437)
T 1n11_A 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM--GY 312 (437)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS--CC
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC--CC
Confidence 344555666666666666666666666666655554 455566666666666666666666666666555554 66
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..+. .+++++|.++..++
T Consensus 313 t~L~~A~~~g~~~~v~~Ll~~gad~--n~~~~~g~t~L~~A~~~g~--~~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 313 TPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPLHQAAQQGH--TDIVTLLLKNGASP 370 (437)
T ss_dssp CHHHHHHHSSCSHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCS
T ss_pred CHHHHHHHcCcHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHCCh--HHHHHHHHHCcCCC
Confidence 6666666666666666666666655 5555566666666655443 36666666555444
No 68
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.92 E-value=1.8e-24 Score=165.65 Aligned_cols=153 Identities=29% Similarity=0.343 Sum_probs=110.2
Q ss_pred cCCcchhhhhhhHHhhh-------hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHh
Q 030377 9 QLGPFTLQRKASRKRFF-------RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQ 81 (178)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~ 81 (178)
..+|+..+........+ .+++..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+.
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~ 89 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK----AKDDQTPLHCAAR 89 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC----CTTSCCHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCCCHHHHHHH
Confidence 34566655554422222 234455667778888888888888888888888777766 6777788888888
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHH
Q 030377 82 GGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMR 161 (178)
Q Consensus 82 ~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~ 161 (178)
.|+.+++++|+.+|++++..+.. |.||||+|+..|+.+++++|++.+++. ...+..|.||||+|+..+.. ++++
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~g~~--~~v~ 163 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTA--GHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKV--RVAE 163 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCH--HHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCC--CCcHHHHHHHcCCHHHHHHHHhCCCCC--cCCCCCCCCHHHHHHHcCCH--HHHH
Confidence 88888888888888877777666 778888888888888888888887766 66677778888888776654 7888
Q ss_pred HHHHhhhhcC
Q 030377 162 FQRESFSAGE 171 (178)
Q Consensus 162 ~l~~~~~~~~ 171 (178)
+|.+...++.
T Consensus 164 ~Ll~~g~~~~ 173 (437)
T 1n11_A 164 LLLERDAHPN 173 (437)
T ss_dssp HHHHTTCCTT
T ss_pred HHHhCCCCCC
Confidence 8877665543
No 69
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.92 E-value=6.9e-25 Score=158.39 Aligned_cols=140 Identities=26% Similarity=0.242 Sum_probs=118.0
Q ss_pred cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCc-------cccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCc
Q 030377 30 DTDDRGWTPLHIGARK---GDIKLVKQLLDEGMDV-------NVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99 (178)
Q Consensus 30 ~~~~~g~t~l~~A~~~---~~~~~v~~ll~~~~~~-------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~ 99 (178)
..|..|+||||+|+.. |+.+++++|++.|+++ +......+..|.||||+|+..++.+++++|+.+|++++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 3578999999999987 9999999999998653 22111125689999999999999999999999999999
Q ss_pred cccCC------------CCCCcHHHHHHHhCCHHHHHHHHH---cCCCCCCCCCCCCCCCccccccccccc-------HH
Q 030377 100 ARTKG------------ACGWTPLHTAAKERKKEAVRFLIE---NGAFLPDDINDSRFNPPLHYCPSLEWA-------YE 157 (178)
Q Consensus 100 ~~~~~------------~~g~t~l~~a~~~~~~~i~~~Ll~---~g~~~~~~~~~~~g~t~l~~a~~~~~~-------~~ 157 (178)
..+.. ..|.||||+|+..|+.+++++|++ .|+++ +..|..|.||||+|+..+.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~--~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI--SARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc--eeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 88761 129999999999999999999999 89988 88999999999999976542 15
Q ss_pred HHHHHHHHhhhhcC
Q 030377 158 EMMRFQRESFSAGE 171 (178)
Q Consensus 158 e~~~~l~~~~~~~~ 171 (178)
+++++|.+...+..
T Consensus 207 ~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 207 SMYNEILILGAKLH 220 (273)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhcc
Confidence 88999999877764
No 70
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.92 E-value=7e-24 Score=153.12 Aligned_cols=131 Identities=27% Similarity=0.357 Sum_probs=103.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCccccCCCC
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+..|.||||+|+..|+.+++++|++. |.+++.. +..|.||||+|+..++ .+++++|+..|++++..+..
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~-- 218 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-- 218 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC----CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT--
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc----CCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC--
Confidence 55677777777777777777777776 7777766 6778888888888887 78888888888888877766
Q ss_pred CCcHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 107 GWTPLHTAAKERKKEAVRFLIE-NGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
|.||||+|+..|+.+++++|++ .|+++ +..|..|.||||+|+..+. .+++++|.++..++..
T Consensus 219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~--~~~~~~g~t~l~~A~~~~~--~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 219 GKTPLILAVEKKHLGLVQRLLEQEHIEI--NDTDSDGKTALLLAVELKL--KKIAELLCKRGASTDC 281 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHSSSCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSSCSCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhccCCCc--cccCCCCCcHHHHHHHcCc--HHHHHHHHHcCCCCCc
Confidence 8888888888888888888888 67776 7778888888888887655 4888888887766544
No 71
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.92 E-value=7.3e-24 Score=157.30 Aligned_cols=134 Identities=31% Similarity=0.370 Sum_probs=90.5
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----------
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD---------- 97 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~---------- 97 (178)
++.+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..++.+++++|+.+|++
T Consensus 84 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~ 159 (351)
T 3utm_A 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM----DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159 (351)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCc
Confidence 4445666667777777777777777777666666655 55666666666666666666655555444
Q ss_pred --------------------------------------------------------------------------------
Q 030377 98 -------------------------------------------------------------------------------- 97 (178)
Q Consensus 98 -------------------------------------------------------------------------------- 97 (178)
T Consensus 160 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~ 239 (351)
T 3utm_A 160 AVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239 (351)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred chHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence
Q ss_pred CccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 98 IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 98 ~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
++..+.. |+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.++..++.
T Consensus 240 ~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~--n~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 240 VNEKNKD--FMTPLHVAAERAHNDVMEVLHKHGAKM--NALDSLGQTALHRAALAGH--LQTCRLLLSYGSDPS 307 (351)
T ss_dssp TTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC--HHHHHHHHHTTCCTT
T ss_pred cCCcCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCc--HHHHHHHHHcCCCCC
Confidence 3333333 777888888888888888888887776 6677778888888876655 377888877766554
No 72
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.92 E-value=2.6e-24 Score=162.01 Aligned_cols=139 Identities=24% Similarity=0.332 Sum_probs=118.1
Q ss_pred hhcccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCccccc----cCCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CC
Q 030377 26 RSVIDTDDRGWTPLHIGARKG---DIKLVKQLLDEGMDVNVAA----WGPKSKGVTPLHLAAQGGHLEVMDVLLERG-AD 97 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~---~~~~v~~ll~~~~~~~~~~----~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~-~~ 97 (178)
.+++..|..|.||||+|+..+ +.+++++|++.|++++... ...+..|.||||+|+..++.+++++|+..+ ++
T Consensus 226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 305 (373)
T 2fo1_E 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305 (373)
T ss_dssp HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence 356667889999999999988 8899999999999887521 011567899999999999999999999875 89
Q ss_pred CccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 98 IDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 98 ~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
++..+.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..++ .+++++|.++.++.
T Consensus 306 ~n~~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gad~--~~~d~~g~t~l~~A~~~g~--~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 306 KDKQDED--GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQLAQANNH--HNIVDIFDRCRPER 372 (373)
T ss_dssp TTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCSSSCCHHHHHHHTTC--HHHHHHHHTTC---
T ss_pred ccCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cCCCCCCCCHHHHHHHcCC--HHHHHHHHhcCccc
Confidence 9988877 999999999999999999999999988 8889999999999998766 49999999887653
No 73
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.92 E-value=7e-24 Score=129.39 Aligned_cols=93 Identities=54% Similarity=0.900 Sum_probs=86.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHH
Q 030377 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT 113 (178)
Q Consensus 34 ~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~ 113 (178)
+|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+.. |.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~--g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHH
Confidence 4899999999999999999999999999988 889999999999999999999999999999998887 9999999
Q ss_pred HHHhCCHHHHHHHHHcCCC
Q 030377 114 AAKERKKEAVRFLIENGAF 132 (178)
Q Consensus 114 a~~~~~~~i~~~Ll~~g~~ 132 (178)
|+..|+.+++++|++.|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999874
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=3.4e-24 Score=142.47 Aligned_cols=124 Identities=23% Similarity=0.323 Sum_probs=112.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHH
Q 030377 35 GWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHT 113 (178)
Q Consensus 35 g~t~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~ 113 (178)
+.++||.|+..|+.+.+++|++. +.+++.. +..|.||||+ +..++.+++++|+..|++++..+.. |.||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~----~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~ 74 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL----NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTS--GTSPVHD 74 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC----CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc----CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCC--CCCHHHH
Confidence 56899999999999999999998 2377776 7889999999 9999999999999999999998877 9999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 114 AAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 114 a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+. .+.
T Consensus 75 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~-~~~ 126 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGADV--NVPDGTGALPIHLAVQEGH--TAVVSFLAAE-SDL 126 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTC--HHHHHHHHTT-SCT
T ss_pred HHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHhCh--HHHHHHHHhc-cCC
Confidence 99999999999999999987 8889999999999998766 4999999987 443
No 75
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=7.5e-25 Score=155.59 Aligned_cols=131 Identities=24% Similarity=0.247 Sum_probs=88.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHH
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l 111 (178)
+..|.||||.|+..+..+.++.|+++|++++. +..|.||||.|+..|+.+++++|+..|++++..+.. |.|||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~--g~t~L 74 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE--GITAL 74 (239)
T ss_dssp ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTT--SCCHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc-----CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHH
Confidence 45799999999999999999999999999886 467889999999999999999999999999998877 99999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCCC
Q 030377 112 HTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETS 173 (178)
Q Consensus 112 ~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~~ 173 (178)
|+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+...+....
T Consensus 75 ~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga~~~~~ 132 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFGVNV--NAADSDGWTPLHCAASCNN--VQVCKFLVESGAAVFAM 132 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccee
Confidence 9999999999999999999988 8899999999999998766 49999999987776533
No 76
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.91 E-value=1.6e-23 Score=155.42 Aligned_cols=102 Identities=36% Similarity=0.551 Sum_probs=95.3
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 49 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~- 123 (351)
T 3utm_A 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK----DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW- 123 (351)
T ss_dssp TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC-
Confidence 345667889999999999999999999999999999988 789999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFL 133 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~ 133 (178)
|.||||+|+..|+.+++++|++.|+++
T Consensus 124 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 150 (351)
T 3utm_A 124 -QFTPLHEAASKNRVEVCSLLLSHGADP 150 (351)
T ss_dssp -CCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred -CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999998876
No 77
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.91 E-value=3e-24 Score=156.24 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=87.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC-CcHHH
Q 030377 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG-WTPLH 112 (178)
Q Consensus 34 ~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g-~t~l~ 112 (178)
+|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. | .||||
T Consensus 61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~~t~L~ 134 (285)
T 3kea_A 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQF----DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT--GWKTSFY 134 (285)
T ss_dssp TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSS--GGGSHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCC--CCCCHHH
Confidence 4677777777777777777777777777766 667777777777777777777777777777766665 6 57777
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCC-CCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 113 TAAKERKKEAVRFLIENGAFLPDDINDS-RFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 113 ~a~~~~~~~i~~~Ll~~g~~~~~~~~~~-~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
+|+..|+.+++++|++.|++. .+. .|.||||+|+..+. .+++++|.+...++.
T Consensus 135 ~A~~~~~~~~v~~Ll~~g~~~----~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 135 HAVMLNDVSIVSYFLSEIPST----FDLAILLSCIHITIKNGH--VDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHTTCHHHHHHHHTTSCTT----CCCSTHHHHHHHHHHTTC--HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHhCCCcc----ccccCCccHHHHHHHcCh--HHHHHHHHHcCCCCC
Confidence 777777777777777776644 122 56677777766554 367777776655544
No 78
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=1.2e-23 Score=152.62 Aligned_cols=131 Identities=22% Similarity=0.313 Sum_probs=116.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccc--ccCCCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCccccCCCCCCcH
Q 030377 36 WTPLHIGARKGDIKLVKQLLDEGMDVNVA--AWGPKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGWTP 110 (178)
Q Consensus 36 ~t~l~~A~~~~~~~~v~~ll~~~~~~~~~--~~~~~~~~~t~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~g~t~ 110 (178)
.++|+.|+..++.+.+..++..|.+++.. ....+..|.||||+|+.. ++.+++++|+.+|++++..+.. |+||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~--g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK--GSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT--CCCH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC--CCCH
Confidence 46899999999999999999999986543 122367899999999999 8999999999999999998887 9999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 111 l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..+. .+++++|.+.......
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~--~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga~~~~ 266 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASI--EIANESGETPLDIAKRLKH--EHCEELLTQALSGRFN 266 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHTTCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC--CCccCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCCC
Confidence 99999999999999999999988 8899999999999998766 5999999998876543
No 79
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.91 E-value=3.2e-24 Score=153.72 Aligned_cols=137 Identities=26% Similarity=0.256 Sum_probs=114.5
Q ss_pred CCCCCcHHHHHH---HcCCHHHHHHHHHcCCCccc-------cccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccc
Q 030377 32 DDRGWTPLHIGA---RKGDIKLVKQLLDEGMDVNV-------AAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR 101 (178)
Q Consensus 32 ~~~g~t~l~~A~---~~~~~~~v~~ll~~~~~~~~-------~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~ 101 (178)
|..|.||||+|+ ..|+.+++++|++.|+++.. .....+..|.||||+|+..++.+++++|+..|++++..
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 122 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence 377999999999 77999999999998855221 11111457999999999999999999999999999988
Q ss_pred cCC------------CCCCcHHHHHHHhCCHHHHHHHHH---cCCCCCCCCCCCCCCCcccccccccccH-------HHH
Q 030377 102 TKG------------ACGWTPLHTAAKERKKEAVRFLIE---NGAFLPDDINDSRFNPPLHYCPSLEWAY-------EEM 159 (178)
Q Consensus 102 ~~~------------~~g~t~l~~a~~~~~~~i~~~Ll~---~g~~~~~~~~~~~g~t~l~~a~~~~~~~-------~e~ 159 (178)
+.. ..|.||||+|+..|+.+++++|++ .|+++ +..|..|.||||+|+..+... .++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~--~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL--RRQDSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT--TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC--cccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 731 229999999999999999999999 88987 889999999999999655421 489
Q ss_pred HHHHHHhhhhc
Q 030377 160 MRFQRESFSAG 170 (178)
Q Consensus 160 ~~~l~~~~~~~ 170 (178)
+++|.+...+.
T Consensus 201 v~~Ll~~ga~~ 211 (260)
T 3jxi_A 201 YDLLLIKCAKL 211 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhCccc
Confidence 99999987766
No 80
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.91 E-value=7.9e-24 Score=158.60 Aligned_cols=97 Identities=28% Similarity=0.375 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-----CCCCCCCCC
Q 030377 69 KSKGVTPLHLAAQGG--HLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF-----LPDDINDSR 141 (178)
Q Consensus 69 ~~~~~t~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~-----~~~~~~~~~ 141 (178)
+..|.||||+|+..+ +.+++++|+..|++++..+.. |.||||+|+..|+.+++++|++.|++ + +..|..
T Consensus 135 ~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~~~~~~ 210 (364)
T 3ljn_A 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA--DETPLMRAMEFRNREALDLMMDTVPSKSSLRL--DYANKQ 210 (364)
T ss_dssp EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT--TCCCTT
T ss_pred CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHhcccccccccc--cccCCC
Confidence 556889999999999 899999999999999888877 99999999999999999999999887 5 778889
Q ss_pred CCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 142 FNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 142 g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|.||||+|+..+.. +++++|.+...+..
T Consensus 211 g~t~L~~A~~~g~~--~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 211 GNSHLHWAILINWE--DVAMRFVEMGIDVN 238 (364)
T ss_dssp CCCTTHHHHTTTCH--HHHHHHHTTTCCTT
T ss_pred CCcHHHHHHHcCCH--HHHHHHHHcCCCCC
Confidence 99999999887664 99999998776654
No 81
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.91 E-value=2.9e-24 Score=159.13 Aligned_cols=139 Identities=17% Similarity=0.092 Sum_probs=117.3
Q ss_pred hhccc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCC---HHHHHHHHHcC-CCCcc
Q 030377 26 RSVID-TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH---LEVMDVLLERG-ADIDA 100 (178)
Q Consensus 26 ~~~~~-~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~L~~~~-~~~~~ 100 (178)
.+++. +|..|+||||+|+..|+.+++++|+++|++++.. +..|+||||+|+..++ .++++.|+..+ ++++.
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~----d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~ 196 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG----DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC----CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence 34556 7899999999999999999999999999999988 8899999999999988 57777777765 66888
Q ss_pred ccCCCCCCcHHHHHHH----hCCHHHHHHHHHcCC--------------------CC-----------------------
Q 030377 101 RTKGACGWTPLHTAAK----ERKKEAVRFLIENGA--------------------FL----------------------- 133 (178)
Q Consensus 101 ~~~~~~g~t~l~~a~~----~~~~~i~~~Ll~~g~--------------------~~----------------------- 133 (178)
.+.. |+||||+|+. .|+.+++++|++.+. ++
T Consensus 197 ~d~~--g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~ 274 (327)
T 1sw6_A 197 EDSM--NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274 (327)
T ss_dssp ECTT--CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred CCCC--CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence 7777 9999999998 899999999988742 11
Q ss_pred CCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCC
Q 030377 134 PDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGET 172 (178)
Q Consensus 134 ~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~ 172 (178)
+.+.+|..|.||||+|+..+. .+++++|.+...++..
T Consensus 275 ~~n~~d~~G~TpLh~A~~~g~--~~~v~~Ll~~Gad~~~ 311 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAARLGN--ISIVDALLDYGADPFI 311 (327)
T ss_dssp TTTCCCTTSCCHHHHHHHHCC--HHHHHHHHHTTCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCcc
Confidence 237788999999999998776 4999999998776643
No 82
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.90 E-value=6.2e-23 Score=148.16 Aligned_cols=125 Identities=28% Similarity=0.463 Sum_probs=66.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHH
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPL 111 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l 111 (178)
+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.|||
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L 109 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR----KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY--GFTAF 109 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT--CCBHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcc--cCCHH
Confidence 444555555555555555555555555555544 445555555555555555555555555555554444 55555
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCC----------CCCCCCcccccccccccHHHHHHHHHHh
Q 030377 112 HTAAKERKKEAVRFLIENGAFLPDDIN----------DSRFNPPLHYCPSLEWAYEEMMRFQRES 166 (178)
Q Consensus 112 ~~a~~~~~~~i~~~Ll~~g~~~~~~~~----------~~~g~t~l~~a~~~~~~~~e~~~~l~~~ 166 (178)
|+|+..|+.+++++|++.|+++ +.. +..|.||||+|+..+. .+++++|.+.
T Consensus 110 ~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ 170 (285)
T 1wdy_A 110 MEAAVYGKVKALKFLYKRGANV--NLRRKTKEDQERLRKGGATALMDAAEKGH--VEVLKILLDE 170 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT--TCCCCCCHHHHHTTCCCCCHHHHHHHHTC--HHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHhCCCc--ccccccHHHHHhhccCCCcHHHHHHHcCC--HHHHHHHHHh
Confidence 5555555555555555555544 222 4445555555554433 2555555543
No 83
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=146.29 Aligned_cols=133 Identities=25% Similarity=0.320 Sum_probs=94.0
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCccccC-CC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH-LEVMDVLLERGADIDARTK-GA 105 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~L~~~~~~~~~~~~-~~ 105 (178)
+..++..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++ .+++++|+..|++++..+. .
T Consensus 102 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~- 176 (240)
T 3eu9_A 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM----DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH- 176 (240)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTT-
T ss_pred CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc----CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccC-
Confidence 3445566667777777777777777777766666655 5666677777765544 5666777777776666554 4
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||+++|+..+. .+++++|.+...+.
T Consensus 177 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~--~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 177 -KNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAKQRKN--VWMINHLQEARQAK 236 (240)
T ss_dssp -CCCHHHHHHHHTCHHHHHHHHHHTCCT--TCBCTTSCBHHHHHHHTTC--HHHHHHHHHHC---
T ss_pred -CCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCc--HHHHHHHHHhhhcc
Confidence 778888888888888888888888877 7778888888888887665 48888888776654
No 84
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=151.29 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=115.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccC--CCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG--PKSKGVTPLHLAAQG---GHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 34 ~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~--~~~~~~t~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
...++|+.|+..|+.+.++.|++.|++++..... .+..|.||||+|+.. ++.+++++|+.+|++++..+.. |+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~--G~ 227 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GN 227 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTT--CC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCC--CC
Confidence 3457899999999999999999999998862100 167899999999997 8999999999999999998877 99
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
||||+|+..|+.+++++|++.|+++ +..|..|.|||++|+..+. .+++++|.+...+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~--~~~d~~G~TpL~~A~~~~~--~~iv~~Ll~~ga~~ 285 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALV--GTVNEAGETALDIARKKHH--KECEELLEQAQAGT 285 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCC--SCCCTTSCCHHHHHHHHTC--HHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--HHHHHHHHHhcCCC
Confidence 9999999999999999999999988 8899999999999998766 49999999987763
No 85
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.90 E-value=2.8e-23 Score=156.42 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=81.3
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCcccc
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG---ADIDART 102 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~---~~~~~~~ 102 (178)
.+++.+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..+ ++++..+
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d 232 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY----NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc----CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcC
Confidence 456677888888888888888888888888888888766 556666666666666666666666554 4454444
Q ss_pred CCCCCCcHHHHHHHhC---CHHHHHHHHHcCCCCCC------CCCCCCCCCcccccccccccHHHHHHHHHHh
Q 030377 103 KGACGWTPLHTAAKER---KKEAVRFLIENGAFLPD------DINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166 (178)
Q Consensus 103 ~~~~g~t~l~~a~~~~---~~~i~~~Ll~~g~~~~~------~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~ 166 (178)
.. |.||||+|+..+ +.+++++|++.|++++. ...|..|.||||+|+..+. .+++++|.+.
T Consensus 233 ~~--g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~--~~~v~~Ll~~ 301 (373)
T 2fo1_E 233 RN--GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN--MPIVKYLVGE 301 (373)
T ss_dssp TT--SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC--HHHHHHHHHH
T ss_pred CC--CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC--HHHHHHHHHh
Confidence 44 555555555554 45555555555554421 1134445555555554433 2555555544
No 86
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=3.2e-23 Score=155.55 Aligned_cols=126 Identities=22% Similarity=0.274 Sum_probs=115.5
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHHcCCCccccccCCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcH
Q 030377 34 RGWTPLHIGARK-GDIKLVKQLLDEGMDVNVAAWGPK--SKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTP 110 (178)
Q Consensus 34 ~g~t~l~~A~~~-~~~~~v~~ll~~~~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~ 110 (178)
.+.++||.|+.. ++.++++.|++.|++++.. + ..|.||||+|+..++.+++++|+.+|++++..+.. |+||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~----~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~--G~Tp 271 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWV----NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA--GRGP 271 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC----CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc----ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC--CCCH
Confidence 345799999999 9999999999999999977 5 78999999999999999999999999999998887 9999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhh
Q 030377 111 LHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSA 169 (178)
Q Consensus 111 l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~ 169 (178)
||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++ .+++++|.+....
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~--~~~d~~G~TpL~~A~~~g~--~~iv~lLl~~~~~ 326 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADL--GARDSEGRDPLTIAMETAN--ADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHCcCCC--CCcCCCCCCHHHHHHHCCC--HHHHHHHHHcCCC
Confidence 99999999999999999999988 8899999999999998766 4999999876643
No 87
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.90 E-value=6.2e-24 Score=134.45 Aligned_cols=110 Identities=41% Similarity=0.589 Sum_probs=100.2
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 29 ~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
..+|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+.. |.
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~ 76 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR----SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD--GN 76 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCC----CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTT--CC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC--CC
Confidence 357899999999999999999999999999999887 789999999999999999999999999999988877 99
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcc
Q 030377 109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPL 146 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l 146 (178)
||||+|+..++.+++++|+++|+++ +..+..|.+|-
T Consensus 77 tpl~~A~~~~~~~~~~~Ll~~ga~~--n~~~~~~~~~~ 112 (115)
T 2l6b_A 77 TPEHLAKKNGHHEIVKLLDAKGADV--NARSWGSSHHH 112 (115)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTSSSH--HHHSCCCC---
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCC--CcCCccccccc
Confidence 9999999999999999999999988 77788888764
No 88
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=142.87 Aligned_cols=140 Identities=26% Similarity=0.289 Sum_probs=121.5
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.++...+..|.||||+|+..|+.+++++|++.|++++... +..|.|||++|+..++.+++++|++.|++++..+..
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~- 108 (240)
T 3eu9_A 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG---GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE- 108 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB---TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc---CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCC-
Confidence 3466778899999999999999999999999999887653 556899999999999999999999999999988777
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcCCC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETS 173 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~~~ 173 (178)
|.||||+|+..|+.+++++|++.|+++ +..+..|.||+|+|+..+. ..+++++|.+...+....
T Consensus 109 -g~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~g~t~l~~a~~~~~-~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 109 -GCSCIHLAAQFGHTSIVAYLIAKGQDV--DMMDQNGMTPLMWAAYRTH-SVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHCC-SSTTHHHHHHTTCCTTCC
T ss_pred -CCCHHHHHHHcCHHHHHHHHHhcCCCc--cccCCCCCcHHHHHHHhCC-hHHHHHHHHhcCCCcchh
Confidence 999999999999999999999999987 8889999999999985443 248889998877666543
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.8e-23 Score=139.28 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=100.0
Q ss_pred ccCCcchhhhhhhHHhh-------hhhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCc-HHHHH
Q 030377 8 EQLGPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVT-PLHLA 79 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t-~l~~a 79 (178)
...+|+..+........ ..+++.+|..|+||||+|+ .|+.+++++|++.|++++.. +..|.| |||+|
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~----d~~g~ttpL~~A 85 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA----DPATLTRPVHDA 85 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC----CTTTCCCHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc----CCCCCcHHHHHH
Confidence 34466666655443222 2346667889999999985 89999999999999999988 788998 99999
Q ss_pred HhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccc
Q 030377 80 AQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 149 (178)
Q Consensus 80 ~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a 149 (178)
+..++.+++++|+.+|++++..+.. |.||||+|+..|+.+++++|+++|+++ +..+..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~--g~tpl~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAW--GRLPVDLAEELGHRDVARYLRAAAGGT--RGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTT--CCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHhCHHHHHHHHHHcCCCC--CccCcCcCcccccC
Confidence 9999999999999999999998887 999999999999999999999999988 88899999988744
No 90
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=1.7e-22 Score=157.31 Aligned_cols=132 Identities=19% Similarity=0.249 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccC--CCCCCCcHHHHHHh---cCCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG--PKSKGVTPLHLAAQ---GGHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 34 ~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~--~~~~~~t~l~~a~~---~~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
...+.||.|+..|+.+.++.|++.|++++..... .+..|.||||+|+. .++.+++++|+.+|++++..+.. |+
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~--g~ 208 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GN 208 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSS--SC
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCC--CC
Confidence 3447899999999999999999999998855211 15679999999976 89999999999999999999888 99
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..+. .+++++|.+...+..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~A~~~~~--~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALV--GTVNEAGETALDIARKKHH--KECEELLEQAQAGTF 267 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCC--SCCCTTCCCHHHHHHHTTC--HHHHHHHHHTCC---
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--HHHHHHHHHhCCCCC
Confidence 9999999999999999999999988 8899999999999998766 499999998776654
No 91
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.88 E-value=8.2e-23 Score=151.35 Aligned_cols=138 Identities=20% Similarity=0.108 Sum_probs=112.3
Q ss_pred ccCCcchhhhhhhHHhh-------hhhcccCCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCccccccCCCCCCCcHH
Q 030377 8 EQLGPFTLQRKASRKRF-------FRSVIDTDDRGWTPLHIGARKGD---IKLVKQLLDEG-MDVNVAAWGPKSKGVTPL 76 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~t~l~~A~~~~~---~~~v~~ll~~~-~~~~~~~~~~~~~~~t~l 76 (178)
...+|+.++......+. ..+++.+|..|+||||+|+..|+ .+.++.|++.+ ++++.. +..|+|||
T Consensus 130 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~----d~~g~tpL 205 (327)
T 1sw6_A 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE----DSMNRTIL 205 (327)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE----CTTCCCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC----CCCCCCHH
Confidence 44577777666543222 24566788899999999999988 67778888776 677777 88999999
Q ss_pred HHHHh----cCCHHHHHHHHHcCC---------------------------------------------CCccccCCCCC
Q 030377 77 HLAAQ----GGHLEVMDVLLERGA---------------------------------------------DIDARTKGACG 107 (178)
Q Consensus 77 ~~a~~----~~~~~~~~~L~~~~~---------------------------------------------~~~~~~~~~~g 107 (178)
|+|+. .++.+++++|+..+. +++..+.. |
T Consensus 206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~--G 283 (327)
T 1sw6_A 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN--G 283 (327)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT--S
T ss_pred HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCC--C
Confidence 99999 889999999987632 46666666 9
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccccc
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLE 153 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~ 153 (178)
+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus 284 ~TpLh~A~~~g~~~~v~~Ll~~Gad~--~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 284 DTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CCHHHHHHHHCCHHHHHHHHHTTCCT--TCCCTTSCCGGGGTCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHhcC
Confidence 99999999999999999999999988 889999999999998653
No 92
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.88 E-value=5.4e-22 Score=147.21 Aligned_cols=127 Identities=28% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCccccCCCC
Q 030377 32 DDRGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGH----LEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 32 ~~~g~t~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+..|.||||+|+..|+.+++++|++ .|++++.. +..|.|+++.++..+. ..++++|+++|++++..+..
T Consensus 165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~----d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~-- 238 (337)
T 4g8k_A 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-- 238 (337)
T ss_dssp TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC----CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGG--
T ss_pred cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc----CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCC--
Confidence 4456777777777777777777774 46666655 4455555554443322 23445555555555554444
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhh
Q 030377 107 GWTPLHTAAKERKKEAVRFLIEN-GAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~ 168 (178)
|+||||+|+..|+.++++.|++. |+++ +.+|..|.||||+|+..+. .+++++|.+...
T Consensus 239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~v--n~~d~~G~TpL~~A~~~g~--~~iv~~Ll~~GA 297 (337)
T 4g8k_A 239 GKTPLILAVEKKHLGLVQRLLEQEHIEI--NDTDSDGKTALLLAVELKL--KKIAELLCKRGA 297 (337)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHTSTTCCT--TCBCTTSCBHHHHHHHTTC--HHHHHHHHTTSC
T ss_pred CCCHHHHHHHhhhhHHHHHHHHhcCCcc--cCcCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence 55555555555555555555543 3433 4455555555555554433 255555554433
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=147.55 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=97.4
Q ss_pred CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC
Q 030377 31 TDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107 (178)
Q Consensus 31 ~~~~g~t~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g 107 (178)
.+..|.||||+|+.. ++.+++++|+++|++++.. +..|.||||+|+..++.+++++|+.+|++++..+.. |
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~----d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~--G 259 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK----AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA--G 259 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTT--S
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--C
Confidence 578899999999997 8999999999999999988 889999999999999999999999999999998888 9
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccc
Q 030377 108 WTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW 154 (178)
Q Consensus 108 ~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~ 154 (178)
.|||++|+..|+.+++++|++.|++ .|.||||+|+..+.
T Consensus 260 ~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 260 ETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCC
Confidence 9999999999999999999999985 47899999987654
No 94
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=7.3e-22 Score=143.24 Aligned_cols=112 Identities=22% Similarity=0.346 Sum_probs=102.3
Q ss_pred cccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC
Q 030377 28 VIDTDDRGWTPLHIGARK---GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 104 (178)
+...+..|.||||+|+.. ++.+++++|+++|++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~----d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 237 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ----TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 237 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC
Confidence 444578899999999999 8999999999999999988 889999999999999999999999999999999888
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccccccc
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWA 155 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~ 155 (178)
|.||||+|+..|+.+++++|++.|++ .+++|.++...|.
T Consensus 238 --g~tpL~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~v~~~W~ 276 (278)
T 1dcq_A 238 --GETPLDIAKRLKHEHCEELLTQALSG----------RFNSHVHVEYEWR 276 (278)
T ss_dssp --SCCHHHHHHHTTCHHHHHHHHHHHTT----------CCCSSCCCCCCCC
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCcceeeecccc
Confidence 99999999999999999999999984 3678888877664
No 95
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=2.7e-22 Score=130.53 Aligned_cols=100 Identities=24% Similarity=0.340 Sum_probs=93.6
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 104 (178)
.+++.+|..|+||||+|+. ++.+++++|++.|++++.. +.. |.||||+|+..++.+++++|++.|++++..+..
T Consensus 36 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~ 110 (136)
T 1d9s_A 36 ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA----DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW 110 (136)
T ss_dssp CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC----BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS
T ss_pred CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence 3466788899999999999 9999999999999999988 677 999999999999999999999999999998887
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAF 132 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~ 132 (178)
|.||||+|+..++.+++++|+++|++
T Consensus 111 --g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 111 --GRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp --SSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999884
No 96
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=1.9e-21 Score=126.55 Aligned_cols=99 Identities=37% Similarity=0.579 Sum_probs=92.3
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.+++.+|..|+||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~- 112 (136)
T 2jab_A 38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF- 112 (136)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC-
Confidence 346678889999999999999999999999999999987 789999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENG 130 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g 130 (178)
|.||||+|+..|+.+++++|++.|
T Consensus 113 -g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 113 -GKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred -CCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999876
No 97
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.87 E-value=8.7e-23 Score=144.17 Aligned_cols=101 Identities=27% Similarity=0.362 Sum_probs=93.8
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART-KGA 105 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~ 105 (178)
+++.+|..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+ ..
T Consensus 46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~- 120 (229)
T 2vge_A 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP----DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD- 120 (229)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSST-
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCC-
Confidence 56778899999999999999999999999999999988 7899999999999999999999999999999875 45
Q ss_pred CCCcHHHHH--HHhCCHHHHHHHHHcCCCC
Q 030377 106 CGWTPLHTA--AKERKKEAVRFLIENGAFL 133 (178)
Q Consensus 106 ~g~t~l~~a--~~~~~~~i~~~Ll~~g~~~ 133 (178)
|+||||+| +..|+.+++++|++.|+++
T Consensus 121 -g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~ 149 (229)
T 2vge_A 121 -GATAFEKCDPYREGYADCATYLADVEQSM 149 (229)
T ss_dssp -TCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence 99999999 9999999999999987654
No 98
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=6.5e-22 Score=135.50 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=109.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCH----HHHHHHHHcCCCCccccCCCCCCcH
Q 030377 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL----EVMDVLLERGADIDARTKGACGWTP 110 (178)
Q Consensus 35 g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~----~~~~~L~~~~~~~~~~~~~~~g~t~ 110 (178)
+.++|+.|++.|+.+.++.++..+.+ ... +..|+||||+|+..++. +++++|+..|++++..+.. |+||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--g~Tp 78 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE--GTTL 78 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTT--CCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--ccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCC--CCcH
Confidence 45789999999999999999987744 331 26799999999999975 5899999999999999887 9999
Q ss_pred HHHHHHhCC------HHHHHHHHHcCCCCCCCCCCCCCC-Ccccccccccc---cHHHHHHHHHH-hhhhcC
Q 030377 111 LHTAAKERK------KEAVRFLIENGAFLPDDINDSRFN-PPLHYCPSLEW---AYEEMMRFQRE-SFSAGE 171 (178)
Q Consensus 111 l~~a~~~~~------~~i~~~Ll~~g~~~~~~~~~~~g~-t~l~~a~~~~~---~~~e~~~~l~~-~~~~~~ 171 (178)
||+|+..++ .+++++|++.|+++ +.+|..|. ||||+|+..+. ...+++++|.+ ...+..
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadi--n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADI--TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCS--SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCC--CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 999999987 68899999999988 88999999 99999997543 24578899988 666554
No 99
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=8.1e-22 Score=120.13 Aligned_cols=91 Identities=44% Similarity=0.664 Sum_probs=83.8
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCccccccc
Q 030377 72 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS 151 (178)
Q Consensus 72 ~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~ 151 (178)
|+||||+|+..++.+++++|++.|++++..+.. |+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCCHHHHHHH
Confidence 789999999999999999999999999998887 999999999999999999999999988 8889999999999998
Q ss_pred ccccHHHHHHHHHHhhh
Q 030377 152 LEWAYEEMMRFQRESFS 168 (178)
Q Consensus 152 ~~~~~~e~~~~l~~~~~ 168 (178)
.+. .+++++|.+...
T Consensus 78 ~~~--~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGH--LEVVKLLLEAGA 92 (93)
T ss_dssp TTC--HHHHHHHHHTTC
T ss_pred cCC--HHHHHHHHHcCC
Confidence 766 599999987643
No 100
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=5.2e-21 Score=122.27 Aligned_cols=101 Identities=51% Similarity=0.847 Sum_probs=94.5
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
.++...+..|.||||+|+..++.+++++|++.|++++.. +..|.||||+|+..++.+++++|+..|++++..+..
T Consensus 26 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~- 100 (126)
T 1n0r_A 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN- 100 (126)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc----CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC-
Confidence 345678889999999999999999999999999999887 788999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCC
Q 030377 106 CGWTPLHTAAKERKKEAVRFLIENGAF 132 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~Ll~~g~~ 132 (178)
|.||+++|+..|+.+++++|+++|++
T Consensus 101 -g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 101 -GRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred -CCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999984
No 101
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.86 E-value=5.1e-21 Score=141.95 Aligned_cols=130 Identities=25% Similarity=0.292 Sum_probs=118.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHH
Q 030377 33 DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLH 112 (178)
Q Consensus 33 ~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~ 112 (178)
..|.|+||.|+..|+.++|++|+++|++++... +..|+||||+|+..|+.+++++|+++|++++..+.. +.++++
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~---~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~--~~~~~~ 97 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE---EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFI 97 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC---CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccC--CCchhH
Confidence 357899999999999999999999999999873 456999999999999999999999999999998887 999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhcC
Q 030377 113 TAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 113 ~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
.++..+...+...++..++++ +..|..|.||+++|+..+.. ++++++.+...+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~t~l~~A~~~~~~--~~~~~ll~~ga~~~ 152 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGADV--NECDFYGFTAFMEAAVYGKV--KALKFLYKRGANVN 152 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCCT--TCBCTTCCBHHHHHHHTTCH--HHHHHHHHTTCCTT
T ss_pred HHHhcccchhhHHhhhccchh--hhhccCCCCHHHHHHHcCcH--HHHHHHHHcCCCcc
Confidence 999999999999999999988 88899999999999987664 99999998766553
No 102
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.84 E-value=1.8e-20 Score=117.67 Aligned_cols=95 Identities=35% Similarity=0.460 Sum_probs=82.0
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~ 105 (178)
....+.|.+|.|+||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~----d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~- 89 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK----DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF- 89 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccC-
Confidence 345678889999999999999999999999999999887 788999999999999999999999999999988877
Q ss_pred CCCcHHHHHHHhCCHHHHHHH
Q 030377 106 CGWTPLHTAAKERKKEAVRFL 126 (178)
Q Consensus 106 ~g~t~l~~a~~~~~~~i~~~L 126 (178)
|.||||+|+..|+.+++++|
T Consensus 90 -g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 90 -GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp -SCCHHHHHHHHTCHHHHHHH
T ss_pred -CCcHHHHHHHcCCHHHHHHh
Confidence 99999999999999999887
No 103
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=3e-20 Score=120.85 Aligned_cols=97 Identities=24% Similarity=0.470 Sum_probs=89.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 030377 69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148 (178)
Q Consensus 69 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~ 148 (178)
+..|.||||+|+..++.+++++|+..|++++..+.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA--GWTPLHEACNHGHLKVVELLLQHKALV--NTTGYQNDSPLHD 82 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCGGGCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCcc--cCcCCCCCCHHHH
Confidence 788999999999999999999999999999988877 999999999999999999999999987 8889999999999
Q ss_pred cccccccHHHHHHHHHHhhhhcC
Q 030377 149 CPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 149 a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|+..+. .+++++|.+...+..
T Consensus 83 A~~~~~--~~~v~~Ll~~ga~~~ 103 (137)
T 3c5r_A 83 AAKNGH--VDIVKLLLSYGASRN 103 (137)
T ss_dssp HHHTTC--HHHHHHHHHTTCCTT
T ss_pred HHHcCC--HHHHHHHHHcCCCCC
Confidence 998766 499999998866654
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=4e-20 Score=144.01 Aligned_cols=105 Identities=25% Similarity=0.285 Sum_probs=90.7
Q ss_pred CCCCCcHHHHHHH---cCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCC
Q 030377 32 DDRGWTPLHIGAR---KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 32 ~~~g~t~l~~A~~---~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
+..|.||||+||. .|+.+++++|+++|++++.. +..|+||||+|+..|+.+++++|+.+|++++..+.. |.
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~----d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~--g~ 241 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK----AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA--GE 241 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCC----CSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTT--CC
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHcCCCCCcc----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CC
Confidence 7789999999976 89999999999999999988 889999999999999999999999999999999887 99
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccc
Q 030377 109 TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~ 150 (178)
||||+|+..|+.+++++|++.|+++ +. +|+|.+.
T Consensus 242 tpl~~A~~~~~~~~~~~Ll~~ga~~--~~------~~~h~~~ 275 (497)
T 3lvq_E 242 TALDIARKKHHKECEELLEQAQAGT--FA------FPLHVDY 275 (497)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHhCCCC--CC------Ccceeec
Confidence 9999999999999999999999987 32 5777654
No 105
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=130.52 Aligned_cols=100 Identities=29% Similarity=0.380 Sum_probs=92.9
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCccccCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE-RGADIDARTKG 104 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~ 104 (178)
......+..|+||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+. .|++++..+..
T Consensus 174 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~----d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~ 249 (276)
T 4hbd_A 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ----DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249 (276)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTT
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCC
Confidence 345566778999999999999999999999999999988 8899999999999999999999999 89999998887
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGA 131 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~ 131 (178)
|.|||++|+..|+.+++++|++++.
T Consensus 250 --g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 250 --GSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp --SCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred --CCCHHHHHHHcCCHHHHHHHHhccC
Confidence 9999999999999999999998754
No 106
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.82 E-value=2e-22 Score=151.72 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=89.3
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC---ccccCC
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI---DARTKG 104 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~---~~~~~~ 104 (178)
+...+..+.||||+|+..|+.+++++|++.|+...... ..+..|.||||+|+..|+.+++++|+++|+++ +....
T Consensus 85 l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~-~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~- 162 (376)
T 2aja_A 85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE- 162 (376)
T ss_dssp HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-
T ss_pred HHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH-HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-
Confidence 33445566788888888888888888888876221100 00334667888888888888888888887652 22222
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCC--CCCCCCCcccccc-cccccHHHHHHHHHHhh
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDI--NDSRFNPPLHYCP-SLEWAYEEMMRFQRESF 167 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~--~~~~g~t~l~~a~-~~~~~~~e~~~~l~~~~ 167 (178)
+.||||+|+..|+.+++++|++.|+++ .. .|..|.||||+|+ ..|.. +++++|.+..
T Consensus 163 --~~TpLh~Aa~~G~~eiv~~Ll~~ga~~--~~~~~d~~g~TpL~~Aa~~~G~~--eiv~~Ll~~g 222 (376)
T 2aja_A 163 --NYHAFRLAAENGHLHVLNRLCELAPTE--ATAMIQAENYYAFRWAAVGRGHH--NVINFLLDCP 222 (376)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHSCGGG--HHHHHHHHHHHHHHHHHSTTCCH--HHHHHHTTSH
T ss_pred --CCCHHHHHHHCCCHHHHHHHHHcCCcc--chhccCCCCCCHHHHHHHHCCCH--HHHHHHHhCC
Confidence 368888888888888888888888765 43 5667778888887 76654 7777777643
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=9.9e-20 Score=136.62 Aligned_cols=121 Identities=26% Similarity=0.295 Sum_probs=92.6
Q ss_pred hcccCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC
Q 030377 27 SVIDTD--DRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104 (178)
Q Consensus 27 ~~~~~~--~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 104 (178)
+++..+ ..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 225 dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~----d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~ 300 (368)
T 3jue_A 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA----DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300 (368)
T ss_dssp CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCC
Confidence 455556 78999999999999999999999999999987 889999999999999999999999999999998887
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCCCccccccccc
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAFL-PDDINDSRFNPPLHYCPSLE 153 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~g~t~l~~a~~~~ 153 (178)
|.||||+|+..++.+++++|+..+... .....+..+.|+++++....
T Consensus 301 --G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 301 --GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp --SCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred --CCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999887532 22445666788888876543
No 108
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.81 E-value=1.1e-21 Score=147.61 Aligned_cols=142 Identities=12% Similarity=0.122 Sum_probs=112.4
Q ss_pred CcchhhhhhhHHhhhhhcc----------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc---cccccCCCCCCCcHHH
Q 030377 11 GPFTLQRKASRKRFFRSVI----------DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDV---NVAAWGPKSKGVTPLH 77 (178)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~----------~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~~~~~~~t~l~ 77 (178)
+|+..+.+....+..+.+. ..+..|.||||+|+..|+.+++++|+++|+++ +.. ... .||||
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~----~~~-~TpLh 168 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ----AEN-YHAFR 168 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS----HHH-HHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC----CCC-CCHHH
Confidence 5555555554433333222 33456789999999999999999999999762 222 112 79999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCcc--ccCCCCCCcHHHHHH-HhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccc
Q 030377 78 LAAQGGHLEVMDVLLERGADIDA--RTKGACGWTPLHTAA-KERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEW 154 (178)
Q Consensus 78 ~a~~~~~~~~~~~L~~~~~~~~~--~~~~~~g~t~l~~a~-~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~ 154 (178)
+|+..|+.+++++|+++|++++. .+.. |.||||+|+ ..|+.+++++|++.|+ .|.||+++|+..|.
T Consensus 169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~--g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~ 237 (376)
T 2aja_A 169 LAAENGHLHVLNRLCELAPTEATAMIQAE--NYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEIHEFEYGE 237 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCGGGHHHHHHHH--HHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHHCTTTTTT
T ss_pred HHHHCCCHHHHHHHHHcCCccchhccCCC--CCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHHHHHHCCC
Confidence 99999999999999999999776 6666 899999999 9999999999999775 27899999998876
Q ss_pred cHHHHHHHHHHhhhhc
Q 030377 155 AYEEMMRFQRESFSAG 170 (178)
Q Consensus 155 ~~~e~~~~l~~~~~~~ 170 (178)
. +++++|.+...+.
T Consensus 238 ~--evv~lL~~~ga~~ 251 (376)
T 2aja_A 238 K--YVNPFIARHVNRL 251 (376)
T ss_dssp T--THHHHHHHHHHHH
T ss_pred H--HHHHHHHhcCccc
Confidence 5 8999999887654
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=7.2e-20 Score=115.57 Aligned_cols=97 Identities=36% Similarity=0.516 Sum_probs=89.2
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 030377 69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148 (178)
Q Consensus 69 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~ 148 (178)
+..|.||||+|+..++.+++++|+..|++++..+.. |.||||+|+..++.+++++|++.|+++ +..|..|.||||+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADV--NARSKDGNTPEHL 81 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS--SCCTTHHHHTTTCHHHHHHHTTTTCCT--TCCCTTCCCTTHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC--cccCCCCCCHHHH
Confidence 778999999999999999999999999999988877 999999999999999999999999987 8889999999999
Q ss_pred cccccccHHHHHHHHHHhhhhcC
Q 030377 149 CPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 149 a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|+..+. .+++++|.+...+..
T Consensus 82 A~~~~~--~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 82 AKKNGH--HEIVKLLDAKGADVN 102 (115)
T ss_dssp HHTTTC--HHHHHHHHTTSSSHH
T ss_pred HHHCCC--HHHHHHHHHcCCCCC
Confidence 998765 599999998776653
No 110
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=6.8e-20 Score=128.43 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=87.7
Q ss_pred hhcccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCC
Q 030377 26 RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104 (178)
Q Consensus 26 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~ 104 (178)
.+++.+|..|+||||+|+..|+.+++++|++. |++++.. +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~----d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 172 (222)
T 3ehr_A 97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ----NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172 (222)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC----CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence 34666788999999999999999999999998 9999988 889999999999999999999999999999998888
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCC
Q 030377 105 ACGWTPLHTAAKERKKEAVRFLIENGAFL 133 (178)
Q Consensus 105 ~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~ 133 (178)
|.|||++|+..++.++++.|+..|+..
T Consensus 173 --g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 173 --KKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp --SCCHHHHCCSHHHHHHHC---------
T ss_pred --CCCHHHHhcchhHHHHHHHHhccchhh
Confidence 999999999999999999999999966
No 111
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.80 E-value=2.6e-19 Score=114.39 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=86.9
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 030377 69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148 (178)
Q Consensus 69 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~ 148 (178)
+..|.||||+|+..++.+++++|+..|.+++..+.. |+||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTT--SSCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHH
Confidence 456789999999999999999999999999988877 999999999999999999999999987 8899999999999
Q ss_pred cccccccHHHHHHHHHHhhhhcC
Q 030377 149 CPSLEWAYEEMMRFQRESFSAGE 171 (178)
Q Consensus 149 a~~~~~~~~e~~~~l~~~~~~~~ 171 (178)
|+..+. .+++++|.+...+..
T Consensus 80 A~~~~~--~~~v~~Ll~~ga~~~ 100 (123)
T 3aaa_C 80 AVYEGH--VSCVKLLLSKGADKT 100 (123)
T ss_dssp HHHHTC--HHHHHHHHHTTCCTT
T ss_pred HHHcCC--HHHHHHHHHcCCCCC
Confidence 998766 499999999876654
No 112
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=1.8e-19 Score=113.07 Aligned_cols=90 Identities=29% Similarity=0.361 Sum_probs=82.2
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccc
Q 030377 69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148 (178)
Q Consensus 69 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~ 148 (178)
+..|.|+||+|+..++.+++++|+..|++++..+.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||+|+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~--g~tpLh~A~~~~~~~~v~~Ll~~ga~~--~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGADV--XAQDKFGKTAFDI 96 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccccCCCcHHHH
Confidence 677899999999999999999999999999988877 999999999999999999999999987 8889999999999
Q ss_pred cccccccHHHHHHHHH
Q 030377 149 CPSLEWAYEEMMRFQR 164 (178)
Q Consensus 149 a~~~~~~~~e~~~~l~ 164 (178)
|+..+. .+++++|+
T Consensus 97 A~~~~~--~~~~~~L~ 110 (110)
T 2zgd_A 97 SIDNGN--EDLAEILQ 110 (110)
T ss_dssp HHHHTC--HHHHHHHC
T ss_pred HHHcCC--HHHHHHhC
Confidence 998765 48888873
No 113
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.78 E-value=1.6e-18 Score=118.16 Aligned_cols=114 Identities=29% Similarity=0.381 Sum_probs=99.1
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++.+|..|+||||+|+..|+.+++++|++.|++++... +..|+||||+|+..++.+++++|+.+|++++..+..
T Consensus 68 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~-- 142 (183)
T 3deo_A 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER-- 142 (183)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---SSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCC--
Confidence 566788899999999999999999999999999998772 388999999999999999999999999999998887
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHh
Q 030377 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166 (178)
Q Consensus 107 g~t~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~ 166 (178)
|.||||+|+..++. ..+.+|+++|+..+ ..+++++|.+.
T Consensus 143 g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~--~~~i~~~L~~~ 181 (183)
T 3deo_A 143 GLTALELAREILKT-------------------TPKGNPMQFGRRIG--LEKVINVLEGQ 181 (183)
T ss_dssp SCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHH--HHHHHHHHHTC
T ss_pred CCCHHHHHHHhccC-------------------cccccHHHHHHHcC--HHHHHHHHHHh
Confidence 99999999865322 23468999998764 56999999865
No 114
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.77 E-value=2.3e-18 Score=122.54 Aligned_cols=100 Identities=31% Similarity=0.365 Sum_probs=90.0
Q ss_pred hcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC
Q 030377 27 SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106 (178)
Q Consensus 27 ~~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~ 106 (178)
+++.+|..|+||||+|+..|+.+++++|++.|++++... +..|.||||+|+..++.+++++|+.+|++++..+..
T Consensus 69 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-- 143 (244)
T 3ui2_A 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER-- 143 (244)
T ss_dssp CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC---SSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--
Confidence 456788899999999999999999999999999998872 378999999999999999999999999999988877
Q ss_pred CCcHHHHHH----------------HhCCHHHHHHHHHcCC
Q 030377 107 GWTPLHTAA----------------KERKKEAVRFLIENGA 131 (178)
Q Consensus 107 g~t~l~~a~----------------~~~~~~i~~~Ll~~g~ 131 (178)
|.||||+|+ ..|+.+++++|++.+.
T Consensus 144 g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp CCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 889888887 6688999999998643
No 115
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=40.24 E-value=4.8 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=28.6
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 030377 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDV 61 (178)
Q Consensus 28 ~~~~~~~g~t~l~~A~~~~~~~~v~~ll~~~~~~ 61 (178)
+..+|..-..++..|+.+++.++++-|++...+.
T Consensus 28 L~KkDkLykDAietAa~S~d~elaEeLL~yFVe~ 61 (125)
T 3qil_A 28 LAKKDSLYKDAMQYASESKDTELAEELLQWFLQE 61 (125)
T ss_dssp CCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTS
T ss_pred HHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5667888889999999999999999999876543
No 116
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=38.08 E-value=31 Score=16.42 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=11.7
Q ss_pred HHHHHHcCCHHHHHHHH
Q 030377 39 LHIGARKGDIKLVKQLL 55 (178)
Q Consensus 39 l~~A~~~~~~~~v~~ll 55 (178)
+..||..|+.+.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 55677777777776653
No 117
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=34.91 E-value=1.5e+02 Score=22.61 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=35.7
Q ss_pred HHHHcCCHHHHHHHHHcCCCcccccc--------C--CCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030377 41 IGARKGDIKLVKQLLDEGMDVNVAAW--------G--PKSKGVTPLHLAAQGGHLEVMDVLLE 93 (178)
Q Consensus 41 ~A~~~~~~~~v~~ll~~~~~~~~~~~--------~--~~~~~~t~l~~a~~~~~~~~~~~L~~ 93 (178)
..+..|+...|+.-+..|.+++.... . .-..|.|.+|+|++..+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34467999999999999888765531 0 01236677777777777777766665
No 118
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=33.86 E-value=47 Score=28.78 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=69.6
Q ss_pred cHHHHHHHcCCHHHHHHHHH-------cCCCccccccCCCCCCCcHHHHHHhcCCH----HHHHHHHHcCCCCccccCCC
Q 030377 37 TPLHIGARKGDIKLVKQLLD-------EGMDVNVAAWGPKSKGVTPLHLAAQGGHL----EVMDVLLERGADIDARTKGA 105 (178)
Q Consensus 37 t~l~~A~~~~~~~~v~~ll~-------~~~~~~~~~~~~~~~~~t~l~~a~~~~~~----~~~~~L~~~~~~~~~~~~~~ 105 (178)
+.+...|..|..+-...++. .|..++... -.+.+.--|+.|.. ++++.+...|..+|..+.+
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvT------YNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn- 204 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM------YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA- 204 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhH------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH-
Confidence 45667788899877666652 344555431 12455556777775 4455556678888887654
Q ss_pred CCCcHHHHHHHhCC-H----HHHHHHHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 106 CGWTPLHTAAKERK-K----EAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 106 ~g~t~l~~a~~~~~-~----~i~~~Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
+.++..|+.|. . ++++-+.+.|..+ + ...+-+...+..-..+++.+.+..++-
T Consensus 205 ---tLI~glcK~G~~~e~A~~Ll~EM~~kG~~P--D-------~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 205 ---AALQCMGRQDQDAGTIERCLEQMSQEGLKL--Q-------ALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp ---HHHHHHHHHTCCHHHHHHHHHHHHHHTCCS--H-------HHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred ---HHHHHHHhCCCcHHHHHHHHHHHHHcCCCC--C-------hhhcccccChhhHHHHHHHHHHhCccc
Confidence 77777788886 2 4566666778755 1 223333333444556777777654433
No 119
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.97 E-value=1.3e+02 Score=23.17 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCcHHHHHHhcCCHHH----HHHHHHcCCCCccccCCCCCCcHHHHHHHhCCHHHHH
Q 030377 49 KLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV----MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVR 124 (178)
Q Consensus 49 ~~v~~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~----~~~L~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~i~~ 124 (178)
+++..+...|..++... -.+.+...+..|..+- ++.+...|..++.... .+.+...+..|..+-+.
T Consensus 91 ~lf~~M~~~G~~Pd~~t------yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty----n~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT------FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY----GPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHTTCCCCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee----hHHHHHHHHCCCHHHHH
Confidence 45666677776666431 1134455566777643 3444456666665543 25666667888866544
Q ss_pred H----HHHcCCCCCCCCCCCCCCCcccccccccccHHHHHHHHHHhhhhc
Q 030377 125 F----LIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAG 170 (178)
Q Consensus 125 ~----Ll~~g~~~~~~~~~~~g~t~l~~a~~~~~~~~e~~~~l~~~~~~~ 170 (178)
- +.+.|..+ +.. .-.+.+..++..|. .++..+++.+-...+
T Consensus 161 ~l~~~M~~~G~~P--d~~--ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 161 EVDAHMVESEVVP--EEP--ELAALLKVSMDTKN-ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTCCC--CHH--HHHHHHHHHHHTTC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCC--CHH--HHHHHHHHHhhCCC-HHHHHHHHHHHHHhC
Confidence 4 34555544 111 11233444444443 356666666554443
No 120
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.62 E-value=2.2e+02 Score=21.91 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=48.6
Q ss_pred cHHHHHHHcCCHHHHH----HHHHcCCCccccccCCCCCCCcHHHHHHhcCCHH----HHHHHHHcCCCCccccCCCCCC
Q 030377 37 TPLHIGARKGDIKLVK----QLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLE----VMDVLLERGADIDARTKGACGW 108 (178)
Q Consensus 37 t~l~~A~~~~~~~~v~----~ll~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~----~~~~L~~~~~~~~~~~~~~~g~ 108 (178)
+.+...+..|..+... .+.+.|..++... -.+.+...++.|..+ +++.+...|..++.....
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t------yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~---- 179 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS------YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA---- 179 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH----
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce------ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH----
Confidence 3466677788875544 4445666665441 113445556677764 445555677777765432
Q ss_pred cHHHHHHHhCCHHHHHHHHH
Q 030377 109 TPLHTAAKERKKEAVRFLIE 128 (178)
Q Consensus 109 t~l~~a~~~~~~~i~~~Ll~ 128 (178)
+.+...+..|+.+-+.-+++
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHH
Confidence 56666678888776655544
Done!