BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030378
MALSPLITALLFALALSASFELSTCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLA
MATTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGGPVQLYASKKNMVSKVMKPKNSNSYK
ISTPLAFSISCPSNVKDSKCGAANKFGSSKTVDLPLPPEWGLAPSSYYVPFVPIIGIP

High Scoring Gene Products

Symbol, full name Information P value
AT2G27385 protein from Arabidopsis thaliana 4.2e-31
AT5G22430 protein from Arabidopsis thaliana 3.4e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030378
        (178 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956084 - symbol:AT2G27385 "AT2G27385" speci...   342  4.2e-31   1
TAIR|locus:2176322 - symbol:AT5G22430 "AT5G22430" species...   324  3.4e-29   1


>TAIR|locus:504956084 [details] [associations]
            symbol:AT2G27385 "AT2G27385" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 InterPro:IPR006041 Pfam:PF01190
            IPI:IPI00521654 RefSeq:NP_850100.2 UniGene:At.22188
            EnsemblPlants:AT2G27385.1 GeneID:817283 KEGG:ath:AT2G27385
            OMA:IESNCEA Uniprot:F4IFT4
        Length = 173

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 80/161 (49%), Positives = 97/161 (60%)

Query:    22 LSTCHEV----LKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77
             LS+C  V    ++GKVSC DC NDYD SG+ V V C+H       TT   G F   LPS 
Sbjct:    28 LSSCLVVSASLVEGKVSCFDCPNDYDYSGITVGVSCSHTNTRFTVTTDKKGDFISELPS- 86

Query:    78 AAMKTPSPLHCHAKLFGGPVQLYASKKNMVSKVMKPKNSNSYKISTPLAFSISCPSNVKD 137
                K  S  +C A+L G   QLYASK N+ SK++K    + Y +S+ L F  SCP +   
Sbjct:    87 ---KIES--NCEAELQGSVKQLYASKNNVKSKIVK-LGGDKYGLSSKLFFLKSCPRSF-- 138

Query:   138 SKCGAANKFGSSKTVDLPLPPEWGLAPSSYYVPFVPIIGIP 178
                     F SSKTVDLP+PPEWGLAP+SYYVPF+PIIGIP
Sbjct:   139 ------GSFSSSKTVDLPVPPEWGLAPTSYYVPFLPIIGIP 173


>TAIR|locus:2176322 [details] [associations]
            symbol:AT5G22430 "AT5G22430" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0031225 "anchored to
            membrane" evidence=TAS] [GO:0048481 "ovule development"
            evidence=RCA] EMBL:CP002688 GO:GO:0031225 EMBL:AB007651
            UniGene:At.71675 UniGene:At.7366 InterPro:IPR006041 Pfam:PF01190
            EMBL:AF370215 EMBL:AY059107 IPI:IPI00535528 RefSeq:NP_568418.1
            STRING:Q9FMQ8 EnsemblPlants:AT5G22430.1 GeneID:832304
            KEGG:ath:AT5G22430 TAIR:At5g22430 InParanoid:Q9FMQ8 OMA:DSKTINF
            PhylomeDB:Q9FMQ8 ProtClustDB:CLSN2689841 ArrayExpress:Q9FMQ8
            Genevestigator:Q9FMQ8 Uniprot:Q9FMQ8
        Length = 172

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 74/159 (46%), Positives = 100/159 (62%)

Query:    21 ELSTCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAAM 80
             ELS    ++ GK+SC DC  D+D SG+KVL+KC+  KK   A     GSF+  LP+  A 
Sbjct:    22 ELSAS-SLVSGKISCLDCHRDFDFSGIKVLLKCDGEKKQITAVAAADGSFRSVLPT--AD 78

Query:    81 KTPSPLHCHAKLFGGPVQLYASKKNMVSKVMKPKN-SNSYKISTPLAFSISCPSNVKDSK 139
             K  S ++C AKL GGP QLYA K N+VS+++K K+ S     S PLAFS+SCP   K S+
Sbjct:    79 KKGS-INCLAKLLGGPEQLYAHKHNLVSELVKSKHDSKVLTTSNPLAFSLSCP---KPSR 134

Query:   140 CGAANKFGSSKTVDLPLPPEWGLAPSSYYVPFVPIIGIP 178
                 +  G SKT++ P    +G  P+S++ PF+PIIGIP
Sbjct:   135 DDIGSMIGDSKTINFPGAGGFGFPPASFF-PFLPIIGIP 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       166   0.00097  107 3  11 22  0.42    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.67u 0.09s 15.76t   Elapsed:  00:00:03
  Total cpu time:  15.67u 0.09s 15.76t   Elapsed:  00:00:03
  Start:  Mon May 20 17:33:32 2013   End:  Mon May 20 17:33:35 2013

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