BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030378
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IVF|B Chain B, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
          Length = 352

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 126 AFSISCPSNVK-----DSKCGAANKFGSSKTVDLPLPPEWGLAPSSYYVP 170
           A +  CP  V+     D      +K      V LPL  E+G  P+ YYVP
Sbjct: 225 ACNRQCPGRVRAFGYLDDTTSHVHKLVKKWKVALPLHAEYGTGPNIYYVP 274


>pdb|2W45|A Chain A, Epstein-Barr Virus Alkaline Nuclease
 pdb|2W45|B Chain B, Epstein-Barr Virus Alkaline Nuclease
          Length = 470

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 98  QLYASKKNMVSKVMKPK-NSNSYKISTPLAFSISCPSNVKDSKC 140
           +L ++ KN  +KV +P   S ++    P+AF + C   VKD  C
Sbjct: 131 KLLSTIKNGPTKVFEPAPISTNHYFGGPVAFGLRCEDTVKDIVC 174


>pdb|2W4B|A Chain A, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
 pdb|2W4B|B Chain B, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
          Length = 470

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 98  QLYASKKNMVSKVMKPK-NSNSYKISTPLAFSISCPSNVKDSKC 140
           +L ++ KN  +KV +P   S ++    P+AF + C   VKD  C
Sbjct: 131 KLLSTIKNGPTKVFEPAPISTNHYFGGPVAFGLRCEDTVKDIVC 174


>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
           Adenosine Kinase Complexed With Activator
 pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
           Adenosine Kinase Complexed With Inhibitor Ap5a
 pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
           Adenosine Kinase Complexed With Inhibitor Ap5a
          Length = 347

 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 22  LSTCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPS 76
           LS+ H      V   D S  +  SG  + V  NH+ +      +V G F +NL +
Sbjct: 146 LSSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSA 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,748,607
Number of Sequences: 62578
Number of extensions: 169873
Number of successful extensions: 323
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 5
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)