BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030378
         (178 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GPG3|DDHB_RHOSU Dimethylsulfide dehydrogenase subunit beta OS=Rhodovulum
           sulfidophilum GN=ddhB PE=1 SV=1
          Length = 325

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 124 PLAFSISCPSNVK-----DSKCGAANKFGSSKTVDLPLPPEWGLAPSSYYVP 170
           P A +  C   ++     D + G  +       V +PL PEWG  PS +YVP
Sbjct: 204 PTACAKQCVGRIRFIGYLDDEAGPVHLLVERYKVAIPLHPEWGTKPSVFYVP 255


>sp|Q21BQ1|GLGA_RHOPB Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18)
           GN=glgA PE=3 SV=1
          Length = 489

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 78  AAMKTPSPLHCHAKLFGGPVQLYASKKN 105
           A +++ +P+H  A LFGGP +L A++K 
Sbjct: 52  AGIESAAPVHSFAMLFGGPARLLAARKG 79


>sp|P39205|CIN_DROME Molybdenum cofactor synthesis protein cinnamon OS=Drosophila
           melanogaster GN=cin PE=1 SV=3
          Length = 601

 Score = 30.8 bits (68), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 119 YKIST--PLAFSISCPSNVKDSKCGAANKFGSSKTVDLPLPPEWGL 162
           YKI+T  PL     C   V+D+K    +K G    VD+ + P+ GL
Sbjct: 276 YKINTGAPLPLEADCVVQVEDTKLLQLDKNGQESLVDILVEPQAGL 321


>sp|Q03714|USA1_YEAST U1 SNP1-associating protein 1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=USA1 PE=1 SV=1
          Length = 838

 Score = 30.8 bits (68), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 31  GKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAAMKTPSPLHCHA 90
           G++     SNDY ++G  +L+  + +++L  A      +FK+  P D+ +  PS  H  A
Sbjct: 448 GEIKIPISSNDYRINGDNILLSPSAIEQLESAL-----NFKIERPRDSTLLHPSGEHVRA 502


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,334,397
Number of Sequences: 539616
Number of extensions: 2328819
Number of successful extensions: 5353
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5351
Number of HSP's gapped (non-prelim): 15
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)