Query 030378
Match_columns 178
No_of_seqs 51 out of 53
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01190 Pollen_Ole_e_I: Polle 99.8 7.9E-20 1.7E-24 134.5 7.8 75 29-103 1-85 (97)
2 PF13620 CarboxypepD_reg: Carb 96.0 0.015 3.2E-07 40.1 4.6 48 29-79 2-50 (82)
3 PF13715 DUF4480: Domain of un 94.9 0.084 1.8E-06 37.0 5.4 44 29-78 2-45 (88)
4 PF05738 Cna_B: Cna protein B- 90.9 0.4 8.6E-06 32.3 3.8 36 44-79 1-39 (70)
5 PF01060 DUF290: Transthyretin 88.3 1.5 3.3E-05 31.4 5.3 43 30-76 1-47 (80)
6 cd03866 M14_CPM Peptidase M14 87.1 1.5 3.3E-05 40.0 5.9 47 28-79 296-342 (376)
7 cd03858 M14_CP_N-E_like Carbox 86.2 1.5 3.3E-05 39.3 5.3 45 28-79 299-343 (374)
8 PF10670 DUF4198: Domain of un 79.6 4.1 8.8E-05 32.4 4.9 47 28-78 152-203 (215)
9 PF07210 DUF1416: Protein of u 78.8 8.7 0.00019 29.1 6.1 48 26-77 7-54 (85)
10 PF11974 MG1: Alpha-2-macroglo 76.5 4.1 8.8E-05 30.4 3.8 33 43-75 27-60 (97)
11 PRK15036 hydroxyisourate hydro 76.3 15 0.00034 29.3 7.3 48 28-77 28-78 (137)
12 cd06245 M14_CPD_III The third 75.5 7.1 0.00015 35.6 5.8 46 26-79 286-331 (363)
13 cd03863 M14_CPD_II The second 72.6 7.9 0.00017 35.5 5.3 47 27-79 297-343 (375)
14 cd03865 M14_CPE_H Peptidase M1 71.2 6.8 0.00015 36.5 4.6 44 29-79 328-371 (402)
15 PF07245 Phlebovirus_G2: Phleb 66.2 7.2 0.00016 37.5 3.8 125 28-171 329-467 (507)
16 TIGR02423 protocat_alph protoc 63.1 30 0.00064 29.2 6.5 52 24-78 37-109 (193)
17 KOG1948 Metalloproteinase-rela 63.1 10 0.00022 39.5 4.3 41 27-74 316-356 (1165)
18 cd00421 intradiol_dioxygenase 59.6 50 0.0011 26.1 6.9 48 23-73 8-71 (146)
19 PF07172 GRP: Glycine rich pro 58.2 7.1 0.00015 29.6 1.8 26 1-26 1-27 (95)
20 TIGR03361 VI_Rhs_Vgr type VI s 57.4 30 0.00064 32.2 6.1 34 62-95 374-407 (513)
21 cd03867 M14_CPZ Peptidase M14- 56.3 30 0.00064 31.8 5.8 44 27-77 318-361 (395)
22 PF08194 DIM: DIM protein; In 55.2 20 0.00044 23.2 3.2 27 11-39 10-36 (36)
23 TIGR01646 vgr_GE Rhs element V 53.2 16 0.00035 33.6 3.6 33 63-95 364-396 (483)
24 cd03868 M14_CPD_I The first ca 52.9 29 0.00062 31.4 5.1 45 28-79 297-341 (372)
25 TIGR02962 hdxy_isourate hydrox 52.5 29 0.00063 26.9 4.4 57 40-101 12-71 (112)
26 TIGR02465 chlorocat_1_2 chloro 52.3 52 0.0011 28.9 6.4 46 24-72 96-155 (246)
27 PF14289 DUF4369: Domain of un 50.0 87 0.0019 21.9 7.2 58 18-92 4-64 (106)
28 PF02369 Big_1: Bacterial Ig-l 49.7 30 0.00064 25.5 3.9 50 27-79 25-79 (100)
29 TIGR02438 catachol_actin catec 49.2 73 0.0016 28.6 7.0 53 22-77 128-196 (281)
30 cd03864 M14_CPN Peptidase M14 48.8 35 0.00077 31.6 5.1 45 26-77 315-359 (392)
31 PF13717 zinc_ribbon_4: zinc-r 48.6 16 0.00036 22.8 2.1 24 32-55 2-30 (36)
32 PF08400 phage_tail_N: Prophag 44.5 35 0.00076 27.6 3.9 39 41-79 14-58 (134)
33 PF00775 Dioxygenase_C: Dioxyg 43.3 1.2E+02 0.0025 25.3 6.9 48 22-72 25-88 (183)
34 TIGR02174 CXXU_selWTH selT/sel 42.9 53 0.0012 23.1 4.2 37 32-77 3-50 (72)
35 PF10262 Rdx: Rdx family; Int 39.1 40 0.00087 23.6 3.1 36 31-77 4-52 (76)
36 cd03463 3,4-PCD_alpha Protocat 35.4 1.5E+02 0.0033 24.8 6.5 47 24-73 34-98 (185)
37 PF14054 DUF4249: Domain of un 34.8 1.2E+02 0.0027 25.4 5.9 49 23-71 24-89 (298)
38 cd03459 3,4-PCD Protocatechuat 31.5 2E+02 0.0044 23.3 6.5 48 23-73 12-78 (158)
39 cd03464 3,4-PCD_beta Protocate 30.5 2E+02 0.0043 24.9 6.6 51 24-77 63-134 (220)
40 COG4594 FecB ABC-type Fe3+-cit 28.5 77 0.0017 29.0 3.8 14 60-73 33-46 (310)
41 cd05822 TLP_HIUase HIUase (5-h 26.5 1.4E+02 0.0031 23.1 4.5 84 42-130 14-109 (112)
42 PF09853 DUF2080: Putative tra 25.4 22 0.00047 24.8 -0.2 18 144-161 23-41 (53)
43 cd03462 1,2-CCD chlorocatechol 25.3 3E+02 0.0065 24.3 6.8 48 22-72 95-156 (247)
44 KOG3493 Ubiquitin-like protein 24.7 20 0.00042 26.4 -0.5 15 42-56 7-21 (73)
45 TIGR02439 catechol_proteo cate 24.6 2.6E+02 0.0057 25.2 6.4 50 24-76 126-191 (285)
46 TIGR02422 protocat_beta protoc 24.3 3E+02 0.0066 23.7 6.6 51 24-77 58-129 (220)
47 cd03460 1,2-CTD Catechol 1,2 d 24.2 2.9E+02 0.0064 24.8 6.7 52 23-77 121-188 (282)
48 PF14481 Fimbrial_PilY2: Type 21.4 71 0.0015 25.5 2.0 17 1-17 1-17 (118)
49 KOG1948 Metalloproteinase-rela 20.9 1.6E+02 0.0035 31.2 4.8 52 20-73 720-786 (1165)
50 PF10731 Anophelin: Thrombin i 20.7 81 0.0018 22.8 2.0 23 1-26 1-24 (65)
No 1
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=99.81 E-value=7.9e-20 Score=134.53 Aligned_cols=75 Identities=33% Similarity=0.526 Sum_probs=63.0
Q ss_pred EEEEEEccCCCC-----CccccCcEEEEEecCCCc----eeeEEecCCceEEEEcCCCCccC-CCCCCcceEEEccCCcc
Q 030378 29 LKGKVSCSDCSN-----DYDLSGVKVLVKCNHLKK----LAMATTQVSGSFKVNLPSDAAMK-TPSPLHCHAKLFGGPVQ 98 (178)
Q Consensus 29 V~GkV~CddC~~-----~~~isGakV~v~C~~~k~----~~~a~TD~~G~FkV~lp~~~~~~-~~~~~~C~akLl~sp~~ 98 (178)
|+|+|||++|+. .+.|+||+|+|+|++.++ .++++||++|.|+|+||.+.... ....+.|.|+|++||++
T Consensus 1 V~G~V~C~~C~~~~~~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp~~ 80 (97)
T PF01190_consen 1 VEGVVYCDDCSSGFSRAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSPDP 80 (97)
T ss_pred CEEEEEeCCCCCCccccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCCcC
Confidence 799999999999 557999999999998654 55799999999999999873200 12569999999999999
Q ss_pred ccccc
Q 030378 99 LYASK 103 (178)
Q Consensus 99 ~Ca~~ 103 (178)
.|+..
T Consensus 81 ~C~~~ 85 (97)
T PF01190_consen 81 SCNVP 85 (97)
T ss_pred cCCCC
Confidence 99754
No 2
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=95.99 E-value=0.015 Score=40.09 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=34.8
Q ss_pred EEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEE-cCCCCc
Q 030378 29 LKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVN-LPSDAA 79 (178)
Q Consensus 29 V~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~-lp~~~~ 79 (178)
|.|+|.=. .|-.++||.|.+.-.+......++||++|.|.+. ||....
T Consensus 2 I~G~V~d~---~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y 50 (82)
T PF13620_consen 2 ISGTVTDA---TGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTY 50 (82)
T ss_dssp EEEEEEET---TSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEE
T ss_pred EEEEEEcC---CCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeE
Confidence 78999843 6778999999999876666778999999999999 887544
No 3
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=94.86 E-value=0.084 Score=37.03 Aligned_cols=44 Identities=30% Similarity=0.470 Sum_probs=33.9
Q ss_pred EEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCC
Q 030378 29 LKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDA 78 (178)
Q Consensus 29 V~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~ 78 (178)
|+|+|. |=..+-.++||.|.+.=. ...+.||++|.|++.++...
T Consensus 2 i~G~V~--d~~t~~pl~~a~V~~~~~----~~~~~Td~~G~F~i~~~~g~ 45 (88)
T PF13715_consen 2 ISGKVV--DSDTGEPLPGATVYLKNT----KKGTVTDENGRFSIKLPEGD 45 (88)
T ss_pred EEEEEE--ECCCCCCccCeEEEEeCC----cceEEECCCeEEEEEEcCCC
Confidence 678886 334467799999998722 26799999999999988653
No 4
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=90.87 E-value=0.4 Score=32.34 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.8
Q ss_pred ccCcEEEEEecCCCceee--EEecCCceEEEE-cCCCCc
Q 030378 44 LSGVKVLVKCNHLKKLAM--ATTQVSGSFKVN-LPSDAA 79 (178)
Q Consensus 44 isGakV~v~C~~~k~~~~--a~TD~~G~FkV~-lp~~~~ 79 (178)
|+||++.|.-.+...... .+||++|.|.+. |+....
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y 39 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTY 39 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEE
Confidence 589999999998777665 999999999998 554434
No 5
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=88.35 E-value=1.5 Score=31.35 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=32.2
Q ss_pred EEEEEccCCCCCccccCcEEEEEecCC----CceeeEEecCCceEEEEcCC
Q 030378 30 KGKVSCSDCSNDYDLSGVKVLVKCNHL----KKLAMATTQVSGSFKVNLPS 76 (178)
Q Consensus 30 ~GkV~CddC~~~~~isGakV~v~C~~~----k~~~~a~TD~~G~FkV~lp~ 76 (178)
+|+..|. +.-++|++|.|==++. .-+.+++||++|.|++.=-.
T Consensus 1 ~G~L~C~----~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~ 47 (80)
T PF01060_consen 1 KGQLMCG----GKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGST 47 (80)
T ss_pred CeEEEeC----CccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEc
Confidence 4777775 3458999999877764 22667999999999987543
No 6
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=87.12 E-value=1.5 Score=40.02 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=36.5
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
-|+|+|. |. .|--|+||+|.|+ +.......+||++|.|...|+....
T Consensus 296 gI~G~V~-D~--~g~pi~~A~V~v~--g~~~~~~~~T~~~G~y~~~l~pG~Y 342 (376)
T cd03866 296 GVKGQVF-DS--NGNPIPNAIVEVK--GRKHICPYRTNVNGEYFLLLLPGKY 342 (376)
T ss_pred ceEEEEE-CC--CCCccCCeEEEEE--cCCceeEEEECCCceEEEecCCeeE
Confidence 4999998 54 4668999999997 4333456799999999888776644
No 7
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=86.20 E-value=1.5 Score=39.28 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=36.2
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
.|+|+|.-. .+-.++||+|.|+ .....++||++|.|.+.||....
T Consensus 299 ~i~G~V~d~---~g~pl~~A~V~i~----~~~~~~~Td~~G~f~~~l~~G~y 343 (374)
T cd03858 299 GIKGFVRDA---NGNPIANATISVE----GINHDVTTAEDGDYWRLLLPGTY 343 (374)
T ss_pred ceEEEEECC---CCCccCCeEEEEe----cceeeeEECCCceEEEecCCEeE
Confidence 599999876 4678999999993 33456899999999999985533
No 8
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=79.61 E-value=4.1 Score=32.44 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=37.0
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCc-----eeeEEecCCceEEEEcCCCC
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKK-----LAMATTQVSGSFKVNLPSDA 78 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~-----~~~a~TD~~G~FkV~lp~~~ 78 (178)
.++.+|. .+|--+.|+.|.+.-.+... ....+||++|.+.+.++..-
T Consensus 152 ~~~~~vl----~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G 203 (215)
T PF10670_consen 152 PLPFQVL----FDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPG 203 (215)
T ss_pred EEEEEEE----ECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCE
Confidence 4555665 44556999999999997654 56799999999999998763
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=78.82 E-value=8.7 Score=29.14 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=39.2
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCC
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~ 77 (178)
+-+|+|+|. +.+--..|+.|+|-=...+-.+|..|+++|.|+.--...
T Consensus 7 e~VItG~V~----~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG 54 (85)
T PF07210_consen 7 ETVITGRVT----RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPG 54 (85)
T ss_pred eEEEEEEEe----cCCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCC
Confidence 458999997 667789999999987777778899999999998655433
No 10
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=76.47 E-value=4.1 Score=30.36 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=26.4
Q ss_pred cccCcEEEEEe-cCCCceeeEEecCCceEEEEcC
Q 030378 43 DLSGVKVLVKC-NHLKKLAMATTQVSGSFKVNLP 75 (178)
Q Consensus 43 ~isGakV~v~C-~~~k~~~~a~TD~~G~FkV~lp 75 (178)
-++|++|.+-= +..+..+.++||++|..++...
T Consensus 27 Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 27 PVAGAEVELYDSRNGQVLASGKTDADGFASFDST 60 (97)
T ss_pred ccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC
Confidence 48999999954 4444577899999999988776
No 11
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=76.33 E-value=15 Score=29.34 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=34.6
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCC---CceeeEEecCCceEEEEcCCC
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHL---KKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~---k~~~~a~TD~~G~FkV~lp~~ 77 (178)
.|.|.| .|=..|--.+|++|+|+=.+. +...+++||+||.|+..++.+
T Consensus 28 ~Is~HV--LDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~ 78 (137)
T PRK15036 28 ILSVHI--LNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQ 78 (137)
T ss_pred CeEEEE--EeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcc
Confidence 377766 466667789999999975432 234689999999998755533
No 12
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=75.53 E-value=7.1 Score=35.58 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=36.0
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
+.-|+|+|. |. .|--|+||+|.|+ +. . -.+||++|.|.+.||....
T Consensus 286 ~~gI~G~V~-d~--~g~pi~~A~V~v~--g~--~-~~~T~~~G~y~~~L~pG~y 331 (363)
T cd06245 286 HKGVHGVVT-DK--AGKPISGATIVLN--GG--H-RVYTKEGGYFHVLLAPGQH 331 (363)
T ss_pred CcEEEEEEE-cC--CCCCccceEEEEe--CC--C-ceEeCCCcEEEEecCCceE
Confidence 447999997 32 5778999999998 22 2 5789999999999986644
No 13
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=72.57 E-value=7.9 Score=35.54 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=36.3
Q ss_pred eEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 27 EVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 27 fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
.-|+|+|.=.. .+--|.||+|.|+ + +..-++||.+|.|.+.||....
T Consensus 297 ~gI~G~V~D~~--~g~pl~~AtV~V~--g--~~~~~~Td~~G~f~~~l~pG~y 343 (375)
T cd03863 297 RGVRGFVLDAT--DGRGILNATISVA--D--INHPVTTYKDGDYWRLLVPGTY 343 (375)
T ss_pred CeEEEEEEeCC--CCCCCCCeEEEEe--c--CcCceEECCCccEEEccCCeeE
Confidence 36999997322 4567999999997 2 3456899999999999887654
No 14
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=71.19 E-value=6.8 Score=36.52 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=34.3
Q ss_pred EEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 29 LKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 29 V~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
|+|+|.-. .+--|.||+|.|+ + .....+||++|.|...||....
T Consensus 328 I~G~V~D~---~g~pI~~AtV~V~--g--~~~~~~T~~~G~Y~~~L~pG~Y 371 (402)
T cd03865 328 VKGFVKDL---QGNPIANATISVE--G--IDHDITSAKDGDYWRLLAPGNY 371 (402)
T ss_pred eEEEEECC---CCCcCCCeEEEEE--c--CccccEECCCeeEEECCCCEEE
Confidence 99999764 4678999999998 2 2234789999999998776643
No 15
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=66.23 E-value=7.2 Score=37.50 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=72.2
Q ss_pred EEEEEEEccCCCCCcc--------ccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCccCCCCCCcceEEEccCCccc
Q 030378 28 VLKGKVSCSDCSNDYD--------LSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGGPVQL 99 (178)
Q Consensus 28 vV~GkV~CddC~~~~~--------isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~sp~~~ 99 (178)
.|+=...=++|.+.+- -+||+|.|+|.-.++..++.+++++++.+.++-... ....|.....+.|.
T Consensus 329 ~i~~~~~~~~C~at~~~itGCYSC~~GA~v~I~C~S~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~-- 402 (507)
T PF07245_consen 329 TISRMTSEDKCSATFSNITGCYSCEEGARVCIKCKSSKNTTIAAVCCDSSITIAFCCSPG----THDYCITLHFNSPQ-- 402 (507)
T ss_pred EEEEEeecCcceEEEeEeeEeecccCCCeEEEEEEeCCCCeEEEEecCCcEEEEEecCCC----CeeEEEEEEcCCcE--
Confidence 3444555567776542 689999999998888888899999999887764432 22556666665553
Q ss_pred ccccCcceeeeecccCCCceeeeccceeeeecCCCCCCccccccccCCCCccCCC----CCCCCC--CCCCccccccc
Q 030378 100 YASKKNMVSKVMKPKNSNSYKISTPLAFSISCPSNVKDSKCGAANKFGSSKTVDL----PLPPEW--GLAPSSYYVPF 171 (178)
Q Consensus 100 Ca~~~~~~srIv~t~~~~~~r~anpL~F~~~~p~~~~~~~~~~~~~~g~s~~~~~----p~p~~~--gl~P~~~~~pf 171 (178)
-+..-.+.=..++..+.|.+-|.++-.-- +...+.|+|.-++. .-+.+| || .+.++=|+
T Consensus 403 ----V~~~C~~sCG~~~~~f~I~G~L~~~~~f~--------~r~~~~~~S~~vn~~~~~~~~~~w~sgl-~~~l~g~~ 467 (507)
T PF07245_consen 403 ----VDENCSYSCGGESKEFHIKGTLIYLGPFD--------DRNYTGGSSIVVNPSEGSWDFFNWLSGL-ISWLGGPW 467 (507)
T ss_pred ----EEEEEEEeCCCCceEEEEEEEEEeccccc--------cccccCceeeEECCccCccChHHHHhHH-HHHhhhHH
Confidence 11222222222334566666665554431 12223455543433 345677 66 45554443
No 16
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=63.14 E-value=30 Score=29.21 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.4
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEEecCC-------------------CceeeEEecCCceEEE--EcCCCC
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHL-------------------KKLAMATTQVSGSFKV--NLPSDA 78 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~-------------------k~~~~a~TD~~G~FkV--~lp~~~ 78 (178)
+...+|+|+|.= ..+--|.||.|.|=..+. .++...+||++|.|.+ ..|...
T Consensus 37 G~~l~l~G~V~D---~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Y 109 (193)
T TIGR02423 37 GERIRLEGRVLD---GDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAV 109 (193)
T ss_pred CCEEEEEEEEEC---CCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCc
Confidence 445789999993 345679999998865421 2233478999999854 456543
No 17
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=63.09 E-value=10 Score=39.52 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=31.6
Q ss_pred eEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEc
Q 030378 27 EVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNL 74 (178)
Q Consensus 27 fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~l 74 (178)
|.|.|||- +=.++-.++|++|.|. +..-++||.+|.||++=
T Consensus 316 fSvtGRVl--~g~~g~~l~gvvvlvn-----gk~~~kTdaqGyykLen 356 (1165)
T KOG1948|consen 316 FSVTGRVL--VGSKGLPLSGVVVLVN-----GKSGGKTDAQGYYKLEN 356 (1165)
T ss_pred EEeeeeEE--eCCCCCCccceEEEEc-----CcccceEcccceEEeee
Confidence 56788884 5556778999999985 44557899999998874
No 18
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=59.58 E-value=50 Score=26.06 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=35.6
Q ss_pred CccceEEEEEEEccCCCCCccccCcEEEEEecCC----------------CceeeEEecCCceEEEE
Q 030378 23 STCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHL----------------KKLAMATTQVSGSFKVN 73 (178)
Q Consensus 23 s~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~----------------k~~~~a~TD~~G~FkV~ 73 (178)
.+....|.|+|.=.+|. -+.||+|.+--.+. ..+....||++|.|.+.
T Consensus 8 ~G~~l~l~G~V~D~~g~---pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ 71 (146)
T cd00421 8 PGEPLTLTGTVLDGDGC---PVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFR 71 (146)
T ss_pred CCCEEEEEEEEECCCCC---CCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEE
Confidence 44457899999977665 48899999876644 22446899999987763
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=58.23 E-value=7.1 Score=29.57 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCc-hhHHHHHHHHHHHhhccccCccc
Q 030378 1 MAL-SPLITALLFALALSASFELSTCH 26 (178)
Q Consensus 1 MA~-~~~~~~llfalaL~~~~~~s~~~ 26 (178)
||+ ..+|..|+||++|+.+.++++.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 785 44444555555554556666655
No 20
>TIGR03361 VI_Rhs_Vgr type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
Probab=57.42 E-value=30 Score=32.15 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=27.4
Q ss_pred EEecCCceEEEEcCCCCccCCCCCCcceEEEccC
Q 030378 62 ATTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGG 95 (178)
Q Consensus 62 a~TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~s 95 (178)
.-||+.|.+||.+|-+..++.+..+-|++|+...
T Consensus 374 i~~D~~GRvkV~f~wd~~~~~~~~~S~wvRvaqp 407 (513)
T TIGR03361 374 IYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQP 407 (513)
T ss_pred EeECCCCCEEEEecccCCCCCCCCCceEEEeccc
Confidence 4589999999999988765454667899999764
No 21
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=56.29 E-value=30 Score=31.82 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.9
Q ss_pred eEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCC
Q 030378 27 EVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 27 fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~ 77 (178)
..|+|+|.=. .+--|.||+|.|+ .+...++||++|.|...||..
T Consensus 318 ~~i~G~V~D~---~g~pi~~A~V~v~----g~~~~~~Td~~G~y~~~l~~G 361 (395)
T cd03867 318 RGIKGFVKDK---DGNPIKGARISVR----GIRHDITTAEDGDYWRLLPPG 361 (395)
T ss_pred ceeEEEEEcC---CCCccCCeEEEEe----ccccceEECCCceEEEecCCC
Confidence 3599999743 3567999999997 234458999999998777755
No 22
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=55.22 E-value=20 Score=23.20 Aligned_cols=27 Identities=37% Similarity=0.746 Sum_probs=13.6
Q ss_pred HHHHHHhhccccCccceEEEEEEEccCCC
Q 030378 11 LFALALSASFELSTCHEVLKGKVSCSDCS 39 (178)
Q Consensus 11 lfalaL~~~~~~s~~~fvV~GkV~CddC~ 39 (178)
++.|+|+++.....-.+++.|+ |.||.
T Consensus 10 l~lLal~~a~~~~pG~ViING~--C~dCn 36 (36)
T PF08194_consen 10 LLLLALAAAVPATPGNVIINGK--CIDCN 36 (36)
T ss_pred HHHHHHHhcccCCCCeEEECce--eeeCC
Confidence 3444453333333444456664 88883
No 23
>TIGR01646 vgr_GE Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
Probab=53.22 E-value=16 Score=33.59 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.6
Q ss_pred EecCCceEEEEcCCCCccCCCCCCcceEEEccC
Q 030378 63 TTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGG 95 (178)
Q Consensus 63 ~TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~s 95 (178)
-||+.|.+||.+|-+..++++..+-|++|+..-
T Consensus 364 ~~d~~GRvkV~f~wd~~~~~~~~~S~W~Rvaqp 396 (483)
T TIGR01646 364 HTDKYGRIRVHFHWDRYGQSNDYSSCWIRVAQP 396 (483)
T ss_pred ccCCCCcEEEEeecCCCCCCCCCCceEEEEecc
Confidence 389999999999988765454667899998763
No 24
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=52.92 E-value=29 Score=31.41 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=34.5
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
-|+|+|.=. .|--++||+|.|+-.+ ..++||++|.|...||....
T Consensus 297 ~i~G~V~d~---~g~pv~~A~V~v~~~~----~~~~td~~G~y~~~l~~G~Y 341 (372)
T cd03868 297 GVKGFVRDA---SGNPIEDATIMVAGID----HNVTTAKFGDYWRLLLPGTY 341 (372)
T ss_pred ceEEEEEcC---CCCcCCCcEEEEEecc----cceEeCCCceEEecCCCEEE
Confidence 489999743 3567999999997533 35799999999877876644
No 25
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=52.46 E-value=29 Score=26.93 Aligned_cols=57 Identities=21% Similarity=0.086 Sum_probs=35.3
Q ss_pred CCccccCcEEEEEecCCC---ceeeEEecCCceEEEEcCCCCccCCCCCCcceEEEccCCccccc
Q 030378 40 NDYDLSGVKVLVKCNHLK---KLAMATTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGGPVQLYA 101 (178)
Q Consensus 40 ~~~~isGakV~v~C~~~k---~~~~a~TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~sp~~~Ca 101 (178)
.|---+|++|.|...+.. ...+++||+||..+--++.... - ....-+|.=--.....
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~--~---~~G~Y~l~F~~g~Yf~ 71 (112)
T TIGR02962 12 SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGET--L---AAGIYKLRFDTGDYFA 71 (112)
T ss_pred CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCccc--C---CCeeEEEEEEhhhhhh
Confidence 344568999999986443 3557999999999754553322 1 2345555544444443
No 26
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=52.28 E-value=52 Score=28.89 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=33.3
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEEecCCCc--------------eeeEEecCCceEEE
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKK--------------LAMATTQVSGSFKV 72 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~--------------~~~a~TD~~G~FkV 72 (178)
+-...|+|+|. | ..|--+.||.|.|=-.+..+ +..-.||++|.|..
T Consensus 96 G~~l~v~G~V~-D--~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F 155 (246)
T TIGR02465 96 HKPLLIRGTVR-D--LSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEV 155 (246)
T ss_pred CcEEEEEEEEE-c--CCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEE
Confidence 44478999998 3 45567999999987664322 34588999998776
No 27
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=49.96 E-value=87 Score=21.91 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=39.7
Q ss_pred hccccCccceEEEEEEEccCCCCCccc-cCcEEEEEecCCCc--eeeEEecCCceEEEEcCCCCccCCCCCCcceEEE
Q 030378 18 ASFELSTCHEVLKGKVSCSDCSNDYDL-SGVKVLVKCNHLKK--LAMATTQVSGSFKVNLPSDAAMKTPSPLHCHAKL 92 (178)
Q Consensus 18 ~~~~~s~~~fvV~GkV~CddC~~~~~i-sGakV~v~C~~~k~--~~~a~TD~~G~FkV~lp~~~~~~~~~~~~C~akL 92 (178)
++++....+|+|+|++. +. .|.+|-|.-...+. ...+..+ +|+|....+-+ +...+.|
T Consensus 4 ~sc~q~~~~~~I~G~i~--------~~~~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~--------~p~~~~l 64 (106)
T PF14289_consen 4 SSCAQQAKQFTIEGKIK--------GLPDGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLD--------EPGFYYL 64 (106)
T ss_pred EEeCCCCCcEEEEEEEc--------CCCCCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCC--------CCEEEEE
Confidence 44444446789999984 34 78899888884433 2236666 99999998865 3456777
No 28
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=49.70 E-value=30 Score=25.52 Aligned_cols=50 Identities=28% Similarity=0.269 Sum_probs=28.4
Q ss_pred eEEEEEEEccCCCCCccccCcEEEE--EecCCCcee---eEEecCCceEEEEcCCCCc
Q 030378 27 EVLKGKVSCSDCSNDYDLSGVKVLV--KCNHLKKLA---MATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 27 fvV~GkV~CddC~~~~~isGakV~v--~C~~~k~~~---~a~TD~~G~FkV~lp~~~~ 79 (178)
..++-+|. | ..|.-++|..|.. .-....-.. .++||++|.+.+.|-+...
T Consensus 25 ~tltatV~--D-~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~a 79 (100)
T PF02369_consen 25 NTLTATVT--D-ANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKA 79 (100)
T ss_dssp EEEEEEEE--E-TTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-
T ss_pred EEEEEEEE--c-CCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCc
Confidence 35555554 2 3455699999999 333221111 4899999999999976644
No 29
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=49.22 E-value=73 Score=28.63 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=35.3
Q ss_pred cCccceEEEEEEEccCCCCCccccCcEEEEEecCCCc--------------eeeEEecCCceEEE--EcCCC
Q 030378 22 LSTCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKK--------------LAMATTQVSGSFKV--NLPSD 77 (178)
Q Consensus 22 ~s~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~--------------~~~a~TD~~G~FkV--~lp~~ 77 (178)
..+-..+|+|+|.=.+ |--|.||+|.|=..+..+ +....||++|.|.+ ..|..
T Consensus 128 ~~G~pl~v~G~V~D~~---G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~ 196 (281)
T TIGR02438 128 EAGTPLVFSGQVTDLD---GNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAP 196 (281)
T ss_pred CCCCEEEEEEEEEcCC---CCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCC
Confidence 3345578999998444 457999999994442211 44589999998654 45543
No 30
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=48.83 E-value=35 Score=31.57 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=32.9
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCC
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~ 77 (178)
+.-|+|+|.-. .+--+.||+|.|+ + .....+||++|.|--.|+..
T Consensus 315 ~~gI~G~V~D~---~g~pi~~A~V~v~--g--~~~~~~T~~~G~y~r~l~pG 359 (392)
T cd03864 315 HQGIKGMVTDE---NNNGIANAVISVS--G--ISHDVTSGTLGDYFRLLLPG 359 (392)
T ss_pred cCeEEEEEECC---CCCccCCeEEEEE--C--CccceEECCCCcEEecCCCe
Confidence 34699999764 4678999999995 2 23458999999994445443
No 31
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.56 E-value=16 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.733 Sum_probs=19.5
Q ss_pred EEEccCCCCCcc-----ccCcEEEEEecC
Q 030378 32 KVSCSDCSNDYD-----LSGVKVLVKCNH 55 (178)
Q Consensus 32 kV~CddC~~~~~-----isGakV~v~C~~ 55 (178)
++.|..|.+.|. |.+..+.|+|..
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~ 30 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSK 30 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCC
Confidence 578999999996 667777888874
No 32
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=44.54 E-value=35 Score=27.62 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=30.4
Q ss_pred CccccCcEEEEEecCCCc------eeeEEecCCceEEEEcCCCCc
Q 030378 41 DYDLSGVKVLVKCNHLKK------LAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 41 ~~~isGakV~v~C~~~k~------~~~a~TD~~G~FkV~lp~~~~ 79 (178)
|--++|+.+.|+=+.... .+..+||++|.|.+++....+
T Consensus 14 G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y 58 (134)
T PF08400_consen 14 GKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVY 58 (134)
T ss_pred CCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeE
Confidence 445889999998875432 445899999999999987755
No 33
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=43.27 E-value=1.2e+02 Score=25.29 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=32.8
Q ss_pred cCccceEEEEEEEccCCCCCccccCcEEEE-EecCC---------------CceeeEEecCCceEEE
Q 030378 22 LSTCHEVLKGKVSCSDCSNDYDLSGVKVLV-KCNHL---------------KKLAMATTQVSGSFKV 72 (178)
Q Consensus 22 ~s~~~fvV~GkV~CddC~~~~~isGakV~v-~C~~~---------------k~~~~a~TD~~G~FkV 72 (178)
..+..++|.|+|.=.+| .-|+||.|.+ .|... ..+....||++|.|.+
T Consensus 25 ~~G~~l~l~G~V~D~~g---~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f 88 (183)
T PF00775_consen 25 APGEPLVLHGRVIDTDG---KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSF 88 (183)
T ss_dssp SSS-EEEEEEEEEETTS---SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEE
T ss_pred CCCCEEEEEEEEECCCC---CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEE
Confidence 45666899999997666 4699999998 77721 1244589999998864
No 34
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=42.89 E-value=53 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.406 Sum_probs=24.5
Q ss_pred EEEccCCCCCc-----------cccCcEEEEEecCCCceeeEEecCCceEEEEcCCC
Q 030378 32 KVSCSDCSNDY-----------DLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 32 kV~CddC~~~~-----------~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~ 77 (178)
.+||..|.-.= -+++..|.++- .....|.|+|.+.+.
T Consensus 3 IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~---------~~~~~G~Fev~~~g~ 50 (72)
T TIGR02174 3 IEYCGSCGYKPRAAWLKQELLEEFPDLEIEGEN---------TPPTTGAFEVTVNGQ 50 (72)
T ss_pred EEECCCCCChHHHHHHHHHHHHHCCCCeeEEee---------ecCCCcEEEEEECCE
Confidence 37999998310 26776665544 335789999998543
No 35
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=39.08 E-value=40 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.423 Sum_probs=24.4
Q ss_pred EEEEccCCCCC--c---------cccC--cEEEEEecCCCceeeEEecCCceEEEEcCCC
Q 030378 31 GKVSCSDCSND--Y---------DLSG--VKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 31 GkV~CddC~~~--~---------~isG--akV~v~C~~~k~~~~a~TD~~G~FkV~lp~~ 77 (178)
-..||..|.-. | .+.+ +.|.+ .....|.|+|.|.+.
T Consensus 4 ~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~-----------~~~~~G~FEV~v~g~ 52 (76)
T PF10262_consen 4 TIEYCTSCGYRPRALELAQELLQTFPDRIAEVEL-----------SPGSTGAFEVTVNGE 52 (76)
T ss_dssp EEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE-----------EEESTT-EEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE-----------EeccCCEEEEEEccE
Confidence 35799999742 1 2555 66655 557799999999854
No 36
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.44 E-value=1.5e+02 Score=24.77 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=33.0
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEEecCCC------------------ceeeEEecCCceEEEE
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLK------------------KLAMATTQVSGSFKVN 73 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k------------------~~~~a~TD~~G~FkV~ 73 (178)
+..++|+|+|.=.+| .-|+||.|.|=..+.. .+....||++|.|.+.
T Consensus 34 G~~l~l~G~V~D~~g---~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~ 98 (185)
T cd03463 34 GERITLEGRVYDGDG---APVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFT 98 (185)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEE
Confidence 445789999995444 4799999988665321 1234789999987764
No 37
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=34.79 E-value=1.2e+02 Score=25.37 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=29.1
Q ss_pred CccceEEEEEEEccC--------CCCCc-------cccCcEEEEEecCCCceee-EEecCC-ceEE
Q 030378 23 STCHEVLKGKVSCSD--------CSNDY-------DLSGVKVLVKCNHLKKLAM-ATTQVS-GSFK 71 (178)
Q Consensus 23 s~~~fvV~GkV~Cdd--------C~~~~-------~isGakV~v~C~~~k~~~~-a~TD~~-G~Fk 71 (178)
...+.||.|...=.+ .+..+ .++||+|.|...+...... ...+++ |.|.
T Consensus 24 ~~~~lVV~~~i~~~~~~~~V~Ls~s~~~~~~~~~~~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~ 89 (298)
T PF14054_consen 24 EEPKLVVEGYITNPGDPQTVRLSRSVPYFDNSPPEPVSGATVTIYEDGQGNEYLFEESSNNDGVYY 89 (298)
T ss_pred CCCeEEEEEEEecCCCcEEEEEEEeecccCCCCCcccCCcEEEEEeCCCcceEeecccCCCcceEE
Confidence 338889999988110 11112 2899999998887655443 222222 6665
No 38
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.52 E-value=2e+02 Score=23.31 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=33.5
Q ss_pred CccceEEEEEEEccCCCCCccccCcEEEEEecCCC-------------------ceeeEEecCCceEEEE
Q 030378 23 STCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLK-------------------KLAMATTQVSGSFKVN 73 (178)
Q Consensus 23 s~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k-------------------~~~~a~TD~~G~FkV~ 73 (178)
.+...+|+|+|.=.+| --++||.|.|=..+.. .+...+||++|.|.+.
T Consensus 12 ~G~~l~l~g~V~D~~g---~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~ 78 (158)
T cd03459 12 IGERIILEGRVLDGDG---RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFR 78 (158)
T ss_pred CCcEEEEEEEEECCCC---CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEE
Confidence 3445789999985554 4789999988655321 1334789999987764
No 39
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.54 E-value=2e+02 Score=24.87 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=34.5
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEEecCC-------------------CceeeEEecCCceEEE--EcCCC
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHL-------------------KKLAMATTQVSGSFKV--NLPSD 77 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~-------------------k~~~~a~TD~~G~FkV--~lp~~ 77 (178)
+-.++|+|+|.=.+| --|.||.|.|=-.+. ..+....||++|.|.+ ..|.-
T Consensus 63 G~~i~l~G~V~D~~G---~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~ 134 (220)
T cd03464 63 GERIIVHGRVLDEDG---RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGA 134 (220)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCC
Confidence 445789999995544 479999998865522 1234578999998665 34543
No 40
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.53 E-value=77 Score=29.03 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=10.9
Q ss_pred eeEEecCCceEEEE
Q 030378 60 AMATTQVSGSFKVN 73 (178)
Q Consensus 60 ~~a~TD~~G~FkV~ 73 (178)
...++||.|+|+|.
T Consensus 33 ~~tVkde~Gt~tv~ 46 (310)
T COG4594 33 AHTVKDELGTFTVP 46 (310)
T ss_pred eeeeeccCCceecC
Confidence 34589999999864
No 41
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=26.55 E-value=1.4e+02 Score=23.13 Aligned_cols=84 Identities=20% Similarity=0.151 Sum_probs=46.6
Q ss_pred ccccCcEEEEEecCCC---ceeeEEecCCceEEEEcCCCCccCCCCCCcceEEEccCCcccccc----cCcceeeeeccc
Q 030378 42 YDLSGVKVLVKCNHLK---KLAMATTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGGPVQLYAS----KKNMVSKVMKPK 114 (178)
Q Consensus 42 ~~isGakV~v~C~~~k---~~~~a~TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~sp~~~Ca~----~~~~~srIv~t~ 114 (178)
--=+|++|.|.=.+.. ...+++||+||..+--++.... - +...-+|+=--...... .......|...-
T Consensus 14 ~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~--~---~~G~Y~l~F~~~~Yf~~~~~~~F~p~V~i~F~i 88 (112)
T cd05822 14 KPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQ--L---AAGTYKLTFDTGAYFAARGQESFYPEVEVRFTI 88 (112)
T ss_pred cccCCCEEEEEEecCCCeEEEEEEEECCCCCccCccccccc--C---CCeeEEEEEEhhhhhhhcCCCccceeeEEEEEE
Confidence 3457888888765432 3667999999999876664322 1 33444444444444432 233334444322
Q ss_pred -C-CCcee---eeccceeeee
Q 030378 115 -N-SNSYK---ISTPLAFSIS 130 (178)
Q Consensus 115 -~-~~~~r---~anpL~F~~~ 130 (178)
+ ...|- +-+|.+|++-
T Consensus 89 ~~~~~HYHvPlLlSP~sYSTY 109 (112)
T cd05822 89 TDPTEHYHVPLLLSPFGYSTY 109 (112)
T ss_pred CCCCCCEEEeEEecCCceecc
Confidence 2 22333 4577777764
No 42
>PF09853 DUF2080: Putative transposon-encoded protein (DUF2080); InterPro: IPR019205 This entry, found in various hypothetical archaeal proteins, has no known function.
Probab=25.40 E-value=22 Score=24.76 Aligned_cols=18 Identities=44% Similarity=0.746 Sum_probs=15.9
Q ss_pred ccCCCCccCCCCCCCCC-C
Q 030378 144 NKFGSSKTVDLPLPPEW-G 161 (178)
Q Consensus 144 ~~~g~s~~~~~p~p~~~-g 161 (178)
+.+|+|-.++..+|++| |
T Consensus 23 k~~Gnsa~v~p~lPkeyiG 41 (53)
T PF09853_consen 23 KPFGNSARVYPSLPKEYIG 41 (53)
T ss_pred EecCcceeEcCCCChHHcC
Confidence 56899999999999999 5
No 43
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=25.29 E-value=3e+02 Score=24.28 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=33.7
Q ss_pred cCccceEEEEEEEccCCCCCccccCcEEEEEecCCCc--------------eeeEEecCCceEEE
Q 030378 22 LSTCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKK--------------LAMATTQVSGSFKV 72 (178)
Q Consensus 22 ~s~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~--------------~~~a~TD~~G~FkV 72 (178)
..+...+|+|+|.=. .|--|.||.|.|=-.+..+ +..-.||++|.|.+
T Consensus 95 ~~G~~l~l~G~V~D~---~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F 156 (247)
T cd03462 95 DDHKPLLFRGTVKDL---AGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEV 156 (247)
T ss_pred CCCCEEEEEEEEEcC---CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEE
Confidence 345557899999843 4558999999987653322 33578999998765
No 44
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.65 E-value=20 Score=26.44 Aligned_cols=15 Identities=53% Similarity=0.576 Sum_probs=12.0
Q ss_pred ccccCcEEEEEecCC
Q 030378 42 YDLSGVKVLVKCNHL 56 (178)
Q Consensus 42 ~~isGakV~v~C~~~ 56 (178)
+|.=|-||+|+|...
T Consensus 7 nDrLGKKVRvKCn~d 21 (73)
T KOG3493|consen 7 NDRLGKKVRVKCNTD 21 (73)
T ss_pred hhhcCceEEEEeCCc
Confidence 356799999999954
No 45
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=24.56 E-value=2.6e+02 Score=25.17 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=34.7
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEEecCCCc--------------eeeEEecCCceEEE--EcCC
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKK--------------LAMATTQVSGSFKV--NLPS 76 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~--------------~~~a~TD~~G~FkV--~lp~ 76 (178)
+...+|+|+|.=.+ +--|.||+|.|=..+..+ +..-.||++|.|.+ ..|.
T Consensus 126 G~pl~v~G~V~D~~---G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~ 191 (285)
T TIGR02439 126 GETLFLHGQVTDAD---GKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPS 191 (285)
T ss_pred CcEEEEEEEEECCC---CCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCC
Confidence 44578999998444 457999999987663222 34589999998655 4454
No 46
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.33 E-value=3e+02 Score=23.74 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=34.9
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEEecCC-------------------CceeeEEecCCceEEE--EcCCC
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHL-------------------KKLAMATTQVSGSFKV--NLPSD 77 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~-------------------k~~~~a~TD~~G~FkV--~lp~~ 77 (178)
+-.++|+|+|.=.+| --|.||.|.|=-.+. ..+....||++|.|.+ ..|.-
T Consensus 58 G~~i~l~G~V~D~~g---~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~ 129 (220)
T TIGR02422 58 GERIIVHGRVLDEDG---RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGP 129 (220)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCC
Confidence 345789999995554 479999998865422 1244578999999665 45544
No 47
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=24.16 E-value=2.9e+02 Score=24.81 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=36.0
Q ss_pred CccceEEEEEEEccCCCCCccccCcEEEEEecCCC--------------ceeeEEecCCceEEE--EcCCC
Q 030378 23 STCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLK--------------KLAMATTQVSGSFKV--NLPSD 77 (178)
Q Consensus 23 s~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k--------------~~~~a~TD~~G~FkV--~lp~~ 77 (178)
.+...+|+|+|.=.+ +--|.||.|.|=..+.. .+...+||++|.|.+ ..|.-
T Consensus 121 ~Gepl~l~G~V~D~~---G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~ 188 (282)
T cd03460 121 DGETLVMHGTVTDTD---GKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSG 188 (282)
T ss_pred CCCEEEEEEEEECCC---CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCC
Confidence 455578999999444 45799999998766332 234589999998554 45543
No 48
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=21.39 E-value=71 Score=25.52 Aligned_cols=17 Identities=47% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHh
Q 030378 1 MALSPLITALLFALALS 17 (178)
Q Consensus 1 MA~~~~~~~llfalaL~ 17 (178)
|-.+++++.-||||+|+
T Consensus 1 Mk~L~~La~~L~alaLa 17 (118)
T PF14481_consen 1 MKSLRLLATALFALALA 17 (118)
T ss_dssp -----------------
T ss_pred CcchHHhhhhhhhhhhc
Confidence 55567787778999983
No 49
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=1.6e+02 Score=31.21 Aligned_cols=52 Identities=19% Similarity=0.396 Sum_probs=38.0
Q ss_pred cccCccceEEEEEEEccCCCCCc--------------cccCcEEEEEecCCCc-eeeEEecCCceEEEE
Q 030378 20 FELSTCHEVLKGKVSCSDCSNDY--------------DLSGVKVLVKCNHLKK-LAMATTQVSGSFKVN 73 (178)
Q Consensus 20 ~~~s~~~fvV~GkV~CddC~~~~--------------~isGakV~v~C~~~k~-~~~a~TD~~G~FkV~ 73 (178)
+++...+.+|.|. |.+=.-.| .++|+++.+.=++-.- ..|+-|+.+|.|++-
T Consensus 720 FyP~s~eavvS~d--C~~~a~~f~g~rGLfL~Gsi~Palega~Ikis~kkds~~~Iev~T~~~Gafk~G 786 (1165)
T KOG1948|consen 720 FYPTSKEAVVSGD--CIENAVKFNGFRGLFLDGSIKPALEGAVIKISLKKDSDVVIEVITNKDGAFKIG 786 (1165)
T ss_pred ecCCceEEEEecc--cchhheeecceeeEEEcceeccCCCCcEEEEEecCCCceeEEEEEcCCCcEEec
Confidence 3455556566666 77666554 3899999998886543 558999999999983
No 50
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.72 E-value=81 Score=22.82 Aligned_cols=23 Identities=30% Similarity=0.167 Sum_probs=14.8
Q ss_pred CCc-hhHHHHHHHHHHHhhccccCccc
Q 030378 1 MAL-SPLITALLFALALSASFELSTCH 26 (178)
Q Consensus 1 MA~-~~~~~~llfalaL~~~~~~s~~~ 26 (178)
||+ +-+|++|+.||+- +.-+++|
T Consensus 1 MA~Kl~vialLC~aLva---~vQ~APQ 24 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA---IVQSAPQ 24 (65)
T ss_pred CcchhhHHHHHHHHHHH---HHhcCcc
Confidence 786 7777777666553 4455666
Done!