Query 030378
Match_columns 178
No_of_seqs 51 out of 53
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 20:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ank_A Transthyretin; hormone 84.3 1.2 4.1E-05 35.2 4.5 124 1-131 1-140 (147)
2 2nsm_A Carboxypeptidase N cata 83.5 1.1 3.9E-05 39.5 4.6 44 28-78 322-365 (439)
3 3uaf_A TTR-52; beta barrel/san 82.7 1.9 6.4E-05 32.6 4.9 49 26-76 4-58 (117)
4 1uwy_A Carboxypeptidase M; met 82.2 0.9 3.1E-05 40.2 3.4 47 27-78 296-342 (426)
5 3mn8_A LP15968P; catalytic dom 81.6 1.8 6.2E-05 38.5 5.2 46 28-79 338-383 (435)
6 1h8l_A Carboxypeptidase GP180 81.3 1.7 5.8E-05 37.5 4.8 48 26-79 300-347 (380)
7 3kcp_A Cellulosomal-scaffoldin 74.8 2.8 9.5E-05 37.1 4.2 53 22-78 153-210 (321)
8 3irp_X URO-adherence factor A; 63.7 17 0.00058 32.7 7.0 53 27-79 306-365 (429)
9 2w9x_A AXE2A, CJCE2B, putative 58.4 6.8 0.00023 33.1 3.2 58 18-78 21-85 (366)
10 3e8v_A Possible transglutamina 40.4 33 0.0011 24.6 4.0 34 41-74 12-48 (82)
11 3qva_A Transthyretin-like prot 39.8 20 0.0007 27.1 2.9 36 39-76 20-55 (116)
12 2p5z_X Type VI secretion syste 37.8 18 0.00061 31.9 2.7 31 64-94 403-433 (491)
13 2h0e_A Transthyretin-like prot 34.8 32 0.0011 26.1 3.3 34 39-72 19-52 (121)
14 3t63_M 3,4-PCD, protocatechuat 28.5 1.6E+02 0.0053 24.6 6.8 48 23-73 74-140 (238)
15 2xsu_A Catechol 1,2 dioxygenas 27.9 1.5E+02 0.0051 25.7 6.8 45 26-73 136-194 (312)
16 2boy_A 3-chlorocatechol 1,2-di 27.9 1.6E+02 0.0056 24.6 6.9 47 24-73 100-160 (254)
17 3kpt_A Collagen adhesion prote 26.9 68 0.0023 27.5 4.5 46 43-97 265-317 (355)
18 1f00_I Intimin; immunoglobulin 26.1 1.3E+02 0.0044 25.6 6.0 56 21-80 15-71 (282)
19 2hbp_A Cytoskeleton assembly c 25.9 23 0.00079 24.8 1.1 13 62-74 7-19 (68)
20 2bum_B Protocatechuate 3,4-dio 25.6 1.8E+02 0.0061 24.2 6.7 50 24-76 76-146 (241)
21 3eqt_A ATP-dependent RNA helic 25.1 82 0.0028 24.7 4.2 40 26-69 63-106 (145)
22 3lhn_A Lipoprotein; structural 24.0 60 0.0021 24.5 3.2 40 28-73 32-80 (126)
23 2ljk_A Protein C17ORF37; MIEN1 23.5 60 0.0021 24.4 3.1 36 32-78 29-75 (117)
24 2g2n_A Transthyretin-like prot 22.0 72 0.0025 23.9 3.2 37 40-76 15-54 (114)
25 3th1_A Chlorocatechol 1,2-diox 21.1 2.7E+02 0.0091 23.5 7.0 46 25-73 98-157 (260)
26 4hj1_A Envelope glycoprotein; 20.7 64 0.0022 29.3 3.2 49 44-96 356-404 (432)
27 1dmh_A 1,2-CTD, catechol 1,2-d 20.6 2.5E+02 0.0087 24.2 6.9 45 26-73 133-193 (311)
28 2npb_A Selenoprotein W; struct 20.5 47 0.0016 24.0 1.9 37 32-77 7-55 (96)
No 1
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=84.27 E-value=1.2 Score=35.16 Aligned_cols=124 Identities=16% Similarity=0.099 Sum_probs=52.5
Q ss_pred CCchhHHHHHHHHHHHhhccccCccceEEEEEEE--ccCCCCCccccCcEEEEEecCCC----ceeeEEecCCceEEEEc
Q 030378 1 MALSPLITALLFALALSASFELSTCHEVLKGKVS--CSDCSNDYDLSGVKVLVKCNHLK----KLAMATTQVSGSFKVNL 74 (178)
Q Consensus 1 MA~~~~~~~llfalaL~~~~~~s~~~fvV~GkV~--CddC~~~~~isGakV~v~C~~~k----~~~~a~TD~~G~FkV~l 74 (178)
||...++.+.|..|++++.+++.+.. --+.-.+ =+|=..|---.|++|.|.-.+.. ..++++||+||.-+=-+
T Consensus 1 m~~~~~~l~~la~l~~~s~a~p~~~~-~sk~PLTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~ll 79 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFVSEAGPTGTG-ESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLT 79 (147)
T ss_dssp ------------------------------CCEEEEEEETTTTEECCSCEEEEEEECTTSCEEEEEEEECCTTSEECCSC
T ss_pred CchHHHHHHHHHHHHhhcccCCcCCC-CCCCCeEEEEEeCCCCcCCCCCEEEEEEECCCCCeEEEEEEEeCCCCCCCCCC
Confidence 88888777776777764222111110 0111111 13445555679999999765332 25579999999976434
Q ss_pred CCCCccCCCCCCcceEEEccCCccccccc----Ccceeeeeccc-CCC--cee---eeccceeeeec
Q 030378 75 PSDAAMKTPSPLHCHAKLFGGPVQLYASK----KNMVSKVMKPK-NSN--SYK---ISTPLAFSISC 131 (178)
Q Consensus 75 p~~~~~~~~~~~~C~akLl~sp~~~Ca~~----~~~~srIv~t~-~~~--~~r---~anpL~F~~~~ 131 (178)
+.+.. ..-..+|+=-.....+.. ......|+..- |.+ -|- +-+|-+|+|..
T Consensus 80 ~~~~~------~~G~Y~L~F~tg~Yf~~~g~~~F~p~V~V~F~i~d~~~~HYHVPLLlSP~gYST~~ 140 (147)
T 4ank_A 80 TEEEF------VEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTA 140 (147)
T ss_dssp CTTTC------CSEEEEEEECHHHHHHHTTCCCSEEEEEEEEEESTTSCCEEEEEEEEETTEEEEEE
T ss_pred Ccccc------CCceEEEEEEHHHHHHhcCCCccccceEEEEEEECCCCCceeEeEEEcCCCcceee
Confidence 44322 345566664444333322 23334555432 222 354 46888888863
No 2
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=83.49 E-value=1.1 Score=39.54 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=35.1
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCC
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDA 78 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~ 78 (178)
.|+|+|. | ..+--|.||+|.|+= ....++||++|.|.+.||...
T Consensus 322 ~i~G~V~--D-~~g~pi~gA~V~v~~----~~~~~~Td~~G~y~~~l~~G~ 365 (439)
T 2nsm_A 322 GIKGMVL--D-QNYNNLANAVISVSG----INHDVTSGDHGDYFRLLLPGI 365 (439)
T ss_dssp SEEEEEE--C-TTSCBCTTCEEEETT----EEEEEECCTTSEEEECCCSEE
T ss_pred ceEEEEE--c-CCCCCccceEEEEEc----ccceeEECCCCeEEEccCCee
Confidence 5999995 4 577789999999962 235699999999988887653
No 3
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=82.67 E-value=1.9 Score=32.62 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=32.3
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEEecC------CCceeeEEecCCceEEEEcCC
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVKCNH------LKKLAMATTQVSGSFKVNLPS 76 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~C~~------~k~~~~a~TD~~G~FkV~lp~ 76 (178)
.+.|+|+..|..= -+...+++|.|-=++ ..-+.++.||++|.|+|.=-.
T Consensus 4 sV~V~G~L~C~~~--Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~~ 58 (117)
T 3uaf_A 4 CLMATGVLKCPTD--PEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGCA 58 (117)
T ss_dssp EEEEEEEEECTTC--GGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEEE
T ss_pred EEEEEEEEEeCCc--cCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEEe
Confidence 3579999999641 233446666554221 123778999999999997543
No 4
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=82.25 E-value=0.9 Score=40.17 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=35.4
Q ss_pred eEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCC
Q 030378 27 EVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDA 78 (178)
Q Consensus 27 fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~ 78 (178)
..|+|+|. | ..|--|.||+|.|+=.. ....++||++|.|.+.|+...
T Consensus 296 ~~I~G~V~--D-~~g~pi~gA~V~v~g~~--~~~~~~Td~~G~y~~~l~~G~ 342 (426)
T 1uwy_A 296 LGVKGQVF--D-QNGNPLPNVIVEVQDRK--HICPYRTNKYGEYYLLLLPGS 342 (426)
T ss_dssp CSEEEEEE--C-TTSCBCCSCEEEETTCC--CSSCCBCCTTCEEEECCCSEE
T ss_pred ceeEEEEE--C-CCCCccCceEEEEEecc--ccceeEeCCCCEEEeccCCee
Confidence 35999995 3 46778999999997432 223479999999998877653
No 5
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=81.60 E-value=1.8 Score=38.52 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=35.0
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
-|+|+|. | ..|--|.||+|.|+ +. +...++||++|.|.+.|+....
T Consensus 338 gv~G~V~-D--~~G~pi~gA~V~v~--g~-~~~~~~Td~~G~y~~~l~pG~Y 383 (435)
T 3mn8_A 338 GIKGLVT-D--ASGFPIADANVYVA--GL-EEKPMRTSKRGEYWRLLTPGLY 383 (435)
T ss_dssp SEEEEEE-C--SSSCBCTTCEEEET--TC-TTSCEECCTTCEEEECCCSEEE
T ss_pred eeEEEEE-C--CCCCccCceEEEEe--cc-cccceEeCCCCeEEEecCCCcE
Confidence 4999996 3 26788999999994 21 1356899999999888876543
No 6
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=81.31 E-value=1.7 Score=37.53 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=36.2
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCc
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAA 79 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~ 79 (178)
+..|+|+|. |=..+--|.||+|.|+= ....++||++|.|.+.||....
T Consensus 300 ~~~i~G~V~--D~~~g~pi~~A~V~v~~----~~~~~~Td~~G~y~~~l~~G~Y 347 (380)
T 1h8l_A 300 HRGIWGFVL--DATDGRGILNATISVAD----INHPVTTYKDGDYWRLLVQGTY 347 (380)
T ss_dssp GCEEEEEEE--ETTTCSBCTTCEEEETT----EEEEEECCTTSEEEECCCSEEE
T ss_pred cccceEEEE--eCCCCCccCceEEEEec----CcceeEECCCEEEEEecCCCcE
Confidence 347999995 43456789999999962 2346899999999988776543
No 7
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=74.80 E-value=2.8 Score=37.06 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=40.4
Q ss_pred cCccceEEEEEEEccC----CCCCccccCcEEEEEecCCCceeeEEecCCceEEE-EcCCCC
Q 030378 22 LSTCHEVLKGKVSCSD----CSNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKV-NLPSDA 78 (178)
Q Consensus 22 ~s~~~fvV~GkV~Cdd----C~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV-~lp~~~ 78 (178)
.+...+.|.|.|.++- =.+.+.=+|++|.+.=.+ ..|+||++|.|++ .||...
T Consensus 153 ~~~~~~~vsGYi~~~~~~~~~~~~~~~~G~~V~i~gt~----~sa~tD~~G~f~I~~vp~~~ 210 (321)
T 3kcp_A 153 PVIEGYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTE----LYAVTDANGYFEITGVPANA 210 (321)
T ss_dssp CCCSSEEEEEEEEESSCCCTTTHHHHHSCCEEEETTSS----CEEECCTTSEEEEEEECCEE
T ss_pred CCCCCceEEEEEccccccccccchhccCCcEEEEEecc----ceeEECCCceEEEeccCCCC
Confidence 4455678999999963 234566799999985433 4899999999999 888865
No 8
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=63.72 E-value=17 Score=32.70 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=38.4
Q ss_pred eEEEEEEEccCCCCCc------cccCcEEEEEecCCCceeeEEecCCceEEEE-cCCCCc
Q 030378 27 EVLKGKVSCSDCSNDY------DLSGVKVLVKCNHLKKLAMATTQVSGSFKVN-LPSDAA 79 (178)
Q Consensus 27 fvV~GkV~CddC~~~~------~isGakV~v~C~~~k~~~~a~TD~~G~FkV~-lp~~~~ 79 (178)
..+.|.|+-|.=+.|- .|+|++|.|.=.+..-.+..+||++|.|... |+....
T Consensus 306 ~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y 365 (429)
T 3irp_X 306 GGFGGYVWFDKNNDGVQNDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNY 365 (429)
T ss_dssp EEEEEEEEECTTSSSSSCCSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEE
T ss_pred EEEccEEEEeCCCCCCcCcCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcE
Confidence 4689999998755442 4999999997222233567999999999977 554443
No 9
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=58.39 E-value=6.8 Score=33.09 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=34.4
Q ss_pred hccccCccceEEEEEEEccCCCC-------CccccCcEEEEEecCCCceeeEEecCCceEEEEcCCCC
Q 030378 18 ASFELSTCHEVLKGKVSCSDCSN-------DYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDA 78 (178)
Q Consensus 18 ~~~~~s~~~fvV~GkV~CddC~~-------~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~ 78 (178)
++++.....+...||+. .-.. .|..+|+.+...+++.+ .....-|..+.|.|.|.+..
T Consensus 21 ~~~~~~~~~~~~~GR~~--~~~~~~~~~~~~~~~~G~~~~~~f~gt~-~~~~~~~~~~~~~v~vDg~~ 85 (366)
T 2w9x_A 21 AADSTKPLPLHIGGRVL--VESPANQPVSYTYSWPAVYFETAFKGQS-LTLKFDDDQNIFRLIVDDKA 85 (366)
T ss_dssp ------CCCCEEESCCE--EECC--CCCEEEECSTTCEEEECC-CCC-CCEEEEESSCEEEEEC--CC
T ss_pred ccccCCCCceEEeeeec--ccCCCcccceeEEecCCEEEEEEEEeCE-EEEEEeCCCcEEEEEECCeE
Confidence 44556666778999994 3332 26789999999999873 22223356888999987664
No 10
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=40.44 E-value=33 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=27.2
Q ss_pred CccccCcEEEEEecCC---CceeeEEecCCceEEEEc
Q 030378 41 DYDLSGVKVLVKCNHL---KKLAMATTQVSGSFKVNL 74 (178)
Q Consensus 41 ~~~isGakV~v~C~~~---k~~~~a~TD~~G~FkV~l 74 (178)
|--.+||+|.+|=-+. -..+.-.||++|.|.+..
T Consensus 12 GkPV~gA~Vefe~yNyae~~~~~~~~TD~~G~~s~~~ 48 (82)
T 3e8v_A 12 GQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTA 48 (82)
T ss_dssp SCBCTTCEEEEEEEETTEEEEEEEEECCTTSEEEEEC
T ss_pred CCCCCCCEEEEEEEEchheeEEEEEEECCCceEEEEE
Confidence 4457899999987765 335568999999999998
No 11
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=39.83 E-value=20 Score=27.14 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCCccccCcEEEEEecCCCceeeEEecCCceEEEEcCC
Q 030378 39 SNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPS 76 (178)
Q Consensus 39 ~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~ 76 (178)
..|---.|++|.|.-.+ ...++++||+||.-+ .|+.
T Consensus 20 ~~G~PAagv~V~L~~~~-~~l~~~~Tn~DGR~~-~l~~ 55 (116)
T 3qva_A 20 STGTPAEGVTVSLSREG-ETLANLVTNAQGRIA-TFSA 55 (116)
T ss_dssp TTTEECTTCEEEEEETT-EEEEEEECCTTSEEC-CSCS
T ss_pred CCCcCCCCCEEEEEEcc-EeEEEeccCCCCCcc-cccc
Confidence 34445689999998766 456789999999985 2443
No 12
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=37.82 E-value=18 Score=31.86 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=22.6
Q ss_pred ecCCceEEEEcCCCCccCCCCCCcceEEEcc
Q 030378 64 TQVSGSFKVNLPSDAAMKTPSPLHCHAKLFG 94 (178)
Q Consensus 64 TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~ 94 (178)
||+.|.+||.++-|..++.+...-|++|+..
T Consensus 403 ~D~~GRvkV~f~wdr~~~~~~~~S~WvRva~ 433 (491)
T 2p5z_X 403 IDKDGRYRVNLDFDRDTWKPGYESLWVRQSR 433 (491)
T ss_dssp BCTTCCEEEECCC-CCCBCTTCCEEEEC---
T ss_pred eCCCCCEEEEECCccCCCCCCCcchhhhhhh
Confidence 7999999999998876555456889999875
No 13
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=34.83 E-value=32 Score=26.13 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=25.4
Q ss_pred CCCccccCcEEEEEecCCCceeeEEecCCceEEE
Q 030378 39 SNDYDLSGVKVLVKCNHLKKLAMATTQVSGSFKV 72 (178)
Q Consensus 39 ~~~~~isGakV~v~C~~~k~~~~a~TD~~G~FkV 72 (178)
..|---+|++|.|.=.+.+..++++||+||.-+-
T Consensus 19 ~~G~PAagv~V~L~~~~~~~l~~~~Tn~DGR~~~ 52 (121)
T 2h0e_A 19 TCGKPAANVKIGLKRLGESIMKEVYTNNDGRVDV 52 (121)
T ss_dssp TTTEECTTCEEEEEETTSCCCEEEECCTTSSCSS
T ss_pred CCcCCCCCCEEEEEECCceEEEEEecCCCCCccC
Confidence 3344568999999865555677899999998653
No 14
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=28.54 E-value=1.6e+02 Score=24.63 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.1
Q ss_pred CccceEEEEEEEccCCCCCccccCcEEEE-EecC------------------CCceeeEEecCCceEEEE
Q 030378 23 STCHEVLKGKVSCSDCSNDYDLSGVKVLV-KCNH------------------LKKLAMATTQVSGSFKVN 73 (178)
Q Consensus 23 s~~~fvV~GkV~CddC~~~~~isGakV~v-~C~~------------------~k~~~~a~TD~~G~FkV~ 73 (178)
.+...+|.|+|.=.+|. -+.||.|.| .|.. +..+....||++|.|.+.
T Consensus 74 ~G~~i~l~G~V~D~~G~---Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~ 140 (238)
T 3t63_M 74 IGERIIVAGRVVDQYGK---PVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFR 140 (238)
T ss_dssp SSCEEEEEEEEEETTSC---BCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred CCcEEEEEEEEECCCCC---CCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEE
Confidence 34557899999976654 789999988 5541 113445799999988764
No 15
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=27.91 E-value=1.5e+02 Score=25.70 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=33.3
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEE-ecC-------------CCceeeEEecCCceEEEE
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVK-CNH-------------LKKLAMATTQVSGSFKVN 73 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~-C~~-------------~k~~~~a~TD~~G~FkV~ 73 (178)
..+|.|+|.=.+|. -|.||.|.|= |.. +..+....||++|.|.+.
T Consensus 136 ~l~v~G~V~D~~G~---Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~ 194 (312)
T 2xsu_A 136 TLIIEGTVTDTEGN---IIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVAL 194 (312)
T ss_dssp EEEEEEEEEETTSC---BCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEECCCCC---CCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEE
Confidence 47899999876654 6999999885 431 223556899999998854
No 16
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=27.87 E-value=1.6e+02 Score=24.63 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=34.1
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEE-ecC-------------CCceeeEEecCCceEEEE
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVK-CNH-------------LKKLAMATTQVSGSFKVN 73 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~-C~~-------------~k~~~~a~TD~~G~FkV~ 73 (178)
+...+|.|+|.=.+| --+.||.|.|= |.. ...+....||++|.|.+.
T Consensus 100 G~~l~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~ 160 (254)
T 2boy_A 100 GDTLIFRGEVVDQEG---APLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLR 160 (254)
T ss_dssp SCEEEEEEEEECTTS---CBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEE
Confidence 445789999987665 46899999884 431 122556899999998875
No 17
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=26.93 E-value=68 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.3
Q ss_pred cccCcEEEEEecCCCcee------eEEecCCceEEEE-cCCCCccCCCCCCcceEEEccCCc
Q 030378 43 DLSGVKVLVKCNHLKKLA------MATTQVSGSFKVN-LPSDAAMKTPSPLHCHAKLFGGPV 97 (178)
Q Consensus 43 ~isGakV~v~C~~~k~~~------~a~TD~~G~FkV~-lp~~~~~~~~~~~~C~akLl~sp~ 97 (178)
.++||+-.|...+.+... +.+||++|.|.+. |+...+ .++=..+|+
T Consensus 265 ~L~GA~F~l~~~~g~~~~~~~~~~~~~td~~G~~~~~~L~~G~Y---------~l~E~~aP~ 317 (355)
T 3kpt_A 265 KMKGAEFVLKDNNGKIVVVAGKEVTGVSDENGVIKWSNIPYGDY---------QIFETKAPT 317 (355)
T ss_dssp BCSCCEEEEEETTSCBCBSSSSBCEEECCTTSEEEEEEEESSEE---------EEEEEECCE
T ss_pred ccCCCEEEEEeCCCCEEEeccceEEEEECCCCeEEECcCCCceE---------EEEEEECCC
Confidence 699999999977554443 6899999999986 665544 244456675
No 18
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=26.14 E-value=1.3e+02 Score=25.60 Aligned_cols=56 Identities=21% Similarity=0.073 Sum_probs=42.4
Q ss_pred ccCccceEEEEEEEccCCCCCccccCcEEEEEecCCCc-eeeEEecCCceEEEEcCCCCcc
Q 030378 21 ELSTCHEVLKGKVSCSDCSNDYDLSGVKVLVKCNHLKK-LAMATTQVSGSFKVNLPSDAAM 80 (178)
Q Consensus 21 ~~s~~~fvV~GkV~CddC~~~~~isGakV~v~C~~~k~-~~~a~TD~~G~FkV~lp~~~~~ 80 (178)
++......|+-+|. | .|--+.|..|...=.+... ...++||++|...+.|-+-..|
T Consensus 15 AdG~d~~t~tatV~--D--~gnpv~g~~V~fs~~~G~l~~~~~~Td~~G~atvtltst~aG 71 (282)
T 1f00_I 15 ANGQDAITYTVKVM--K--GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPG 71 (282)
T ss_dssp SSSCCCEEEEEEEE--E--TTEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEECSSCE
T ss_pred ccCcceEEEEEEEE--E--CCcccCCcEEEEEcCCCccccceeEECCCcEEEEEEEcCCce
Confidence 34445567888998 4 7778999999998765421 2358999999999999877653
No 19
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=25.89 E-value=23 Score=24.81 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.5
Q ss_pred EEecCCceEEEEc
Q 030378 62 ATTQVSGSFKVNL 74 (178)
Q Consensus 62 a~TD~~G~FkV~l 74 (178)
.=||.+|+|+|+=
T Consensus 7 tWtDrtG~F~VeA 19 (68)
T 2hbp_A 7 LWVDRSGTFKVDA 19 (68)
T ss_dssp EEEBSSSCCEEEE
T ss_pred EEEcCCCCeEEEE
Confidence 4589999999973
No 20
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=25.64 E-value=1.8e+02 Score=24.19 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=35.2
Q ss_pred ccceEEEEEEEccCCCCCccccCcEEEEE-ecC------------------CCceeeEEecCCceEEEE--cCC
Q 030378 24 TCHEVLKGKVSCSDCSNDYDLSGVKVLVK-CNH------------------LKKLAMATTQVSGSFKVN--LPS 76 (178)
Q Consensus 24 ~~~fvV~GkV~CddC~~~~~isGakV~v~-C~~------------------~k~~~~a~TD~~G~FkV~--lp~ 76 (178)
+...+|.|+|.=.+|. -+.||.|.|= |.. +..+....||++|.|.+. .|.
T Consensus 76 G~~i~v~G~V~D~~G~---Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg 146 (241)
T 2bum_B 76 GERVIVHGYVRDQFGR---PVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPG 146 (241)
T ss_dssp SCEEEEEEEEEETTSC---BCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCC
T ss_pred CcEEEEEEEEECCCCC---CCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecCC
Confidence 4457899999977765 7899999884 331 112345889999988764 454
No 21
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=25.09 E-value=82 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=30.3
Q ss_pred ceEEEEEEEccCCCCCcc----ccCcEEEEEecCCCceeeEEecCCce
Q 030378 26 HEVLKGKVSCSDCSNDYD----LSGVKVLVKCNHLKKLAMATTQVSGS 69 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~----isGakV~v~C~~~k~~~~a~TD~~G~ 69 (178)
.|.-.|++.|-+|.+.|+ +.|+. +-|-..++... +| .+|.
T Consensus 63 d~~~~g~I~C~~Cgq~WG~~m~yk~~~--LP~LkIksFVv-e~-~~g~ 106 (145)
T 3eqt_A 63 DWKPGGVISCRNCGEVWGLQMIYKSVK--LPVLKVRSMLL-ET-PQGR 106 (145)
T ss_dssp SEEEEEEEEETTTCCEEEEEEEETTEE--EEEECGGGEEE-EE-TTEE
T ss_pred cccCCcEEEchhhChhhHhhEEecccc--CceEeEEEEEE-Ec-CCCc
Confidence 356789999999999986 67754 88888877664 33 6665
No 22
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=23.97 E-value=60 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=28.6
Q ss_pred EEEEEEEccCCCCCccccCcEEEEEecCCCcee---------eEEecCCceEEEE
Q 030378 28 VLKGKVSCSDCSNDYDLSGVKVLVKCNHLKKLA---------MATTQVSGSFKVN 73 (178)
Q Consensus 28 vV~GkV~CddC~~~~~isGakV~v~C~~~k~~~---------~a~TD~~G~FkV~ 73 (178)
+=+|..=|.||. ||++.|.-...++-. .....+.|.|++.
T Consensus 32 tY~G~LPCADC~------GI~ttLtL~~Dgty~l~~~Yl~~~~~~~~~~G~~~w~ 80 (126)
T 3lhn_A 32 VYEGVLPCASCE------GIQTTLTLQADNSFELKSIYLGKDESIFKVAGKFDWD 80 (126)
T ss_dssp EEEEEECCTTSS------EEEEEEEECTTSEEEEEEEEESTTCEEEEEEEEEEEC
T ss_pred EEEEEeECCCCC------CeEEEEEECCCCCEEEEEEECCCCCCCeEeeeEEEEe
Confidence 578999999994 889988887544311 2455567888774
No 23
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=23.51 E-value=60 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.408 Sum_probs=25.1
Q ss_pred EEEccCCCCCc-----------cccCcEEEEEecCCCceeeEEecCCceEEEEcCCCC
Q 030378 32 KVSCSDCSNDY-----------DLSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDA 78 (178)
Q Consensus 32 kV~CddC~~~~-----------~isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~ 78 (178)
..||..|.-.- .|.++.|.+ .....|.|+|.|.+..
T Consensus 29 IeYC~~C~~~~ra~~laqeLl~tFp~~~V~l-----------~pg~~G~FeV~v~g~l 75 (117)
T 2ljk_A 29 VEYCEPCGFEATYLELASAVKEQYPGIEIES-----------RLGGTGAFEIEINGQL 75 (117)
T ss_dssp EEECTTTTCHHHHHHHHHHHTTTCSSSCCEE-----------EECSSSCEEEETTSSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCcceEEE-----------ecCCCceEEEEECCEE
Confidence 56999997421 267765543 4577899999997653
No 24
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=21.98 E-value=72 Score=23.88 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=25.0
Q ss_pred CCccccCcEEEEEecCC---CceeeEEecCCceEEEEcCC
Q 030378 40 NDYDLSGVKVLVKCNHL---KKLAMATTQVSGSFKVNLPS 76 (178)
Q Consensus 40 ~~~~isGakV~v~C~~~---k~~~~a~TD~~G~FkV~lp~ 76 (178)
.|---.|++|.|.=.+. ...++++||+||.-+--++.
T Consensus 15 ~G~PAagv~V~L~~~~~~~~~~l~~~~Tn~DGR~~~l~~~ 54 (114)
T 2g2n_A 15 TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPE 54 (114)
T ss_dssp TTEECCSCEEEEEEECSSSEEEEEEEECCTTSEESCCSCS
T ss_pred CcCCCCCCEEEEEEeCCCCcEEEEEEecCCCCccccccCC
Confidence 34446899999976433 23567999999987543333
No 25
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=21.12 E-value=2.7e+02 Score=23.48 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=32.4
Q ss_pred cceEEEEEEEccCCCCCccccCcEEEEE-ecCC-------------CceeeEEecCCceEEEE
Q 030378 25 CHEVLKGKVSCSDCSNDYDLSGVKVLVK-CNHL-------------KKLAMATTQVSGSFKVN 73 (178)
Q Consensus 25 ~~fvV~GkV~CddC~~~~~isGakV~v~-C~~~-------------k~~~~a~TD~~G~FkV~ 73 (178)
-..+|.|+|.=.+|. -+.||.|-|= |... ..+....||++|.|...
T Consensus 98 ~pl~v~G~V~D~~G~---Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~TD~~G~y~F~ 157 (260)
T 3th1_A 98 KPLIIRGTVRSDTGE---LLAGAVIDVWHSTPDGLYSGIHDNIPVDYYRGKLVTDSQGNYRVR 157 (260)
T ss_dssp CEEEEEEEEEETTSC---BCSSCEEEEEECCTTSCCTTTSTTCCTTBTEEEEECCTTSEEEEE
T ss_pred CEEEEEEEEECCCCC---CcCCcEEEEEecCCCCcccCcCCCCCCCCCceEEEeCCCCEEEEE
Confidence 347899999866554 6999999884 4411 12456899999988653
No 26
>4hj1_A Envelope glycoprotein; class II fusion protein, membrane fusion, viral envelope, VI protein; HET: NAG BMA MES; 1.90A {Rift valley fever virus} PDB: 4hjc_A
Probab=20.74 E-value=64 Score=29.29 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=31.9
Q ss_pred ccCcEEEEEecCCCceeeEEecCCceEEEEcCCCCccCCCCCCcceEEEccCC
Q 030378 44 LSGVKVLVKCNHLKKLAMATTQVSGSFKVNLPSDAAMKTPSPLHCHAKLFGGP 96 (178)
Q Consensus 44 isGakV~v~C~~~k~~~~a~TD~~G~FkV~lp~~~~~~~~~~~~C~akLl~sp 96 (178)
.+||+|.|+|+-.+....--+.+.|+|-+.++=+. |.. ..|...-...|
T Consensus 356 ~~GA~~~i~c~S~~~~~~~a~~~~~~~~~~~~cs~-G~~---~~~i~~hfn~~ 404 (432)
T 4hj1_A 356 NAGARVCLSITSTGTGSLSAHNKDGSLHIVLPSEN-GTK---DQCQILHFTVP 404 (432)
T ss_dssp SSCEEEEEEEEESSCEEEEEEETTSSCEEEEEECB-EEE---EEEEEECCSSS
T ss_pred ccCCeEEEEEEeCCCceEEEEecCCceEEEEEecC-Ccc---ceeEEEEeCCC
Confidence 68999999999766655555666777666555333 333 55655555555
No 27
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=20.65 E-value=2.5e+02 Score=24.24 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=31.8
Q ss_pred ceEEEEEEEccCCCCCccccCcEEEEE-ecC---------------CCceeeEEecCCceEEEE
Q 030378 26 HEVLKGKVSCSDCSNDYDLSGVKVLVK-CNH---------------LKKLAMATTQVSGSFKVN 73 (178)
Q Consensus 26 ~fvV~GkV~CddC~~~~~isGakV~v~-C~~---------------~k~~~~a~TD~~G~FkV~ 73 (178)
..+|.|+|.=.+| --+.||.|.|= |.. +..+....||++|.|.+.
T Consensus 133 ~l~l~G~V~D~~G---~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~ 193 (311)
T 1dmh_A 133 TLILHGTIFDADG---KPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVR 193 (311)
T ss_dssp EEEEEEEEECTTS---CBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEcCCC---CCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEE
Confidence 4789999987665 46888888773 331 223446899999988764
No 28
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=20.48 E-value=47 Score=24.02 Aligned_cols=37 Identities=27% Similarity=0.541 Sum_probs=22.9
Q ss_pred EEEccCCCCC--c---------cccC-cEEEEEecCCCceeeEEecCCceEEEEcCCC
Q 030378 32 KVSCSDCSND--Y---------DLSG-VKVLVKCNHLKKLAMATTQVSGSFKVNLPSD 77 (178)
Q Consensus 32 kV~CddC~~~--~---------~isG-akV~v~C~~~k~~~~a~TD~~G~FkV~lp~~ 77 (178)
..||..|.-. | -|++ +.|.++ . .-...|.|+|.|++.
T Consensus 7 I~YC~~C~y~~ra~~laqeLl~~Fp~~l~V~~~--l-------~p~~~G~FEV~vng~ 55 (96)
T 2npb_A 7 VVYSGACGYKPKYLQLKEKLEHEFPGCLDICGE--G-------TPQVTGFFEVTVAGK 55 (96)
T ss_dssp EECCCCSCHHHHHHHHHHHHHHHSBTTEEEEEC--C-------CSSCCSCCEEEETTE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCcceEEEEE--E-------cCCCCcEEEEEECCE
Confidence 5799999531 0 1666 444443 1 234679999999654
Done!