BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030379
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
           3300001g02) Product Homologous To Ubiquitin Fold
          Length = 105

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%)

Query: 64  SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCL 123
           S M + + K+DG    V V+ +ATV DLK AI++ V   ++   G +HISW +VW  Y L
Sbjct: 6   SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 65

Query: 124 SHQNQKLLDENSALQDCGVRNNSQVQFV 151
           +   +KL ++   L+D G+RN  +V F+
Sbjct: 66  TSAGEKLTEDRKKLRDYGIRNRDEVSFI 93


>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
           Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
 pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
           Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
          Length = 109

 Score = 26.9 bits (58), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 57  LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94
           ++ L   S   +++L LDG S++ AV N   +K+L +A
Sbjct: 67  VVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDIA 104


>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
           Alpha-Actinin-4 Mutant(K255e)
 pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
           Alpha-Actinin-4 Mutant(K255e)
          Length = 237

 Score = 26.6 bits (57), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 79  DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 138
           D++V  ++  + L L  ++K    +  N+ + HISWK   A   L H+++  L E   L+
Sbjct: 118 DISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLR 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,369,290
Number of Sequences: 62578
Number of extensions: 149925
Number of successful extensions: 417
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 8
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)