BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030379
         (178 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9BV90|SNR25_HUMAN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo
           sapiens GN=SNRNP25 PE=1 SV=1
          Length = 132

 Score =  103 bits (256), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 75/123 (60%)

Query: 29  LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
               L  ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ SATV
Sbjct: 4   FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63

Query: 89  KDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQV 148
            DLK AI++ V   ++   G +HISW +VW  Y L+   +KL ++   L+D G+RN  +V
Sbjct: 64  LDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEV 123

Query: 149 QFV 151
            F+
Sbjct: 124 SFI 126


>sp|Q3ZBQ4|SNR25_BOVIN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos
           taurus GN=SNRNP25 PE=2 SV=2
          Length = 123

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 74/116 (63%)

Query: 36  LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
           ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ +ATV DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 96  KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 151
           ++ V   ++   G +HISW +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct: 62  QRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117


>sp|Q8VIK1|SNR25_MOUSE U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus
           musculus GN=Snrnp25 PE=1 SV=1
          Length = 123

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 74/116 (63%)

Query: 36  LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
           ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ +ATV DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 96  KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 151
           ++ V   ++   G +HISW +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct: 62  QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117


>sp|Q6LMV1|GSH1_PHOPR Glutamate--cysteine ligase OS=Photobacterium profundum GN=gshA PE=3
           SV=1
          Length = 524

 Score = 32.7 bits (73), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 68  ISILKLDGTSFDVAVMNSATVKDLKL----AIKKKVNDMEQSNLGHRHISWKHVWANYCL 123
           I +  LD   F    +    V+ L L    A+    +DM+ S L      W+  W    L
Sbjct: 328 IEVRSLDVNPFSPIGITEDQVRFLDLFLTWAVLTPSDDMDDSELA----CWRDNWNRVVL 383

Query: 124 SHQNQKLL------DENSALQDCGVRNNSQVQFVPFVLSKGSGKHSKRRKHRIFRG 173
             +N  L+       E  +LQD GVR   ++Q V  V+ K +G +  +      +G
Sbjct: 384 DGRNPDLMLKIGCNGERLSLQDWGVRVFKELQDVAVVMDKAAGNNKYQETCERLKG 439


>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
           SV=2
          Length = 371

 Score = 32.0 bits (71), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 46  PKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
           P+ P     D+  SL +  A    + KL+G  FDV V  +  VK LK
Sbjct: 261 PRHPDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVPKARVVKQLK 307


>sp|B8DVU1|OBG_BIFA0 GTPase obg OS=Bifidobacterium animalis subsp. lactis (strain AD011)
           GN=obg PE=3 SV=1
          Length = 570

 Score = 31.2 bits (69), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 37  LDDPILA-DVPKKP---TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
           LD P+ A  +P++P    L+ +D   + E+   +R    KLD   ++++  + A +K+L 
Sbjct: 282 LDLPLGAIPIPERPRVIILNKIDVPDAKELADFVRPEFEKLDLPVYEISTASHAGLKELN 341

Query: 93  LAIKKKVNDM 102
            A+ K V +M
Sbjct: 342 FALAKLVKEM 351


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,850,323
Number of Sequences: 539616
Number of extensions: 2254669
Number of successful extensions: 6159
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6154
Number of HSP's gapped (non-prelim): 12
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)