Query 030379
Match_columns 178
No_of_seqs 139 out of 194
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.2E-14 2.6E-19 103.6 8.3 70 66-151 2-71 (73)
2 cd01804 midnolin_N Ubiquitin-l 99.5 3.7E-14 8E-19 101.5 8.6 73 65-154 1-73 (78)
3 cd01792 ISG15_repeat1 ISG15 ub 99.5 3.2E-13 7E-18 96.6 8.4 72 66-153 3-76 (80)
4 cd01806 Nedd8 Nebb8-like ubiq 99.4 5.3E-13 1.1E-17 92.5 8.6 74 66-155 1-74 (76)
5 cd01807 GDX_N ubiquitin-like d 99.4 6.4E-13 1.4E-17 93.3 8.3 72 66-153 1-72 (74)
6 cd01803 Ubiquitin Ubiquitin. U 99.4 8.2E-13 1.8E-17 91.5 8.5 74 66-155 1-74 (76)
7 cd01805 RAD23_N Ubiquitin-like 99.4 8.3E-13 1.8E-17 92.4 8.5 72 66-153 1-74 (77)
8 cd01809 Scythe_N Ubiquitin-lik 99.4 1.2E-12 2.7E-17 89.8 8.3 72 66-153 1-72 (72)
9 cd01808 hPLIC_N Ubiquitin-like 99.4 3.6E-12 7.8E-17 88.9 8.1 71 66-153 1-71 (71)
10 cd01810 ISG15_repeat2 ISG15 ub 99.4 3.7E-12 8.1E-17 89.6 7.8 72 68-155 1-72 (74)
11 cd01797 NIRF_N amino-terminal 99.3 4.8E-12 1E-16 91.0 7.9 73 66-154 1-75 (78)
12 PF00240 ubiquitin: Ubiquitin 99.3 5.7E-12 1.2E-16 86.3 7.9 68 71-154 1-68 (69)
13 PTZ00044 ubiquitin; Provisiona 99.3 1.1E-11 2.3E-16 86.8 8.5 74 66-155 1-74 (76)
14 cd01802 AN1_N ubiquitin-like d 99.3 1.1E-11 2.3E-16 93.8 9.0 78 62-155 24-101 (103)
15 cd01793 Fubi Fubi ubiquitin-li 99.3 9.6E-12 2.1E-16 87.5 8.1 72 66-155 1-72 (74)
16 cd01798 parkin_N amino-termina 99.3 9.3E-12 2E-16 86.4 7.6 70 68-153 1-70 (70)
17 cd01812 BAG1_N Ubiquitin-like 99.3 1.3E-11 2.9E-16 84.7 7.9 69 66-151 1-69 (71)
18 cd01794 DC_UbP_C dendritic cel 99.3 1.3E-11 2.9E-16 87.0 7.5 69 68-152 1-69 (70)
19 cd01813 UBP_N UBP ubiquitin pr 99.3 1.8E-11 3.9E-16 87.2 7.8 69 66-151 1-72 (74)
20 cd01796 DDI1_N DNA damage indu 99.3 2.1E-11 4.5E-16 85.7 7.2 68 68-150 1-69 (71)
21 cd01790 Herp_N Homocysteine-re 99.3 2.4E-11 5.2E-16 88.7 7.7 71 65-151 1-77 (79)
22 cd01800 SF3a120_C Ubiquitin-li 99.1 2E-10 4.4E-15 81.4 7.3 69 72-156 4-72 (76)
23 smart00213 UBQ Ubiquitin homol 99.1 2.4E-10 5.2E-15 75.8 6.8 64 66-146 1-64 (64)
24 KOG0010 Ubiquitin-like protein 99.1 1.9E-10 4.1E-15 107.0 7.7 80 64-160 14-93 (493)
25 TIGR00601 rad23 UV excision re 99.1 3.7E-10 7.9E-15 102.5 8.2 73 66-153 1-75 (378)
26 cd01769 UBL Ubiquitin-like dom 99.0 1E-09 2.2E-14 73.6 7.3 67 70-152 2-68 (69)
27 cd01763 Sumo Small ubiquitin-r 99.0 2.5E-09 5.5E-14 77.9 9.4 79 61-155 7-85 (87)
28 PF11976 Rad60-SLD: Ubiquitin- 98.9 6E-09 1.3E-13 72.1 7.3 71 66-151 1-71 (72)
29 cd01799 Hoil1_N Ubiquitin-like 98.9 5.6E-09 1.2E-13 74.8 6.5 63 73-151 10-73 (75)
30 PLN02560 enoyl-CoA reductase 98.9 7E-09 1.5E-13 91.8 7.9 72 66-152 1-82 (308)
31 cd01815 BMSC_UbP_N Ubiquitin-l 98.8 5.3E-09 1.1E-13 75.8 5.5 56 83-153 18-75 (75)
32 cd01801 Tsc13_N Ubiquitin-like 98.8 1.4E-08 3.1E-13 72.2 6.7 71 67-152 2-76 (77)
33 cd01795 USP48_C USP ubiquitin- 98.7 3.2E-08 6.8E-13 75.9 6.5 63 76-153 15-77 (107)
34 KOG0011 Nucleotide excision re 98.5 3.3E-07 7.2E-12 82.2 6.8 74 66-154 1-75 (340)
35 PF11543 UN_NPL4: Nuclear pore 98.5 3.1E-07 6.7E-12 66.8 5.4 74 63-152 2-79 (80)
36 cd01789 Alp11_N Ubiquitin-like 98.4 1.2E-06 2.6E-11 63.6 7.7 72 66-152 2-80 (84)
37 PF14560 Ubiquitin_2: Ubiquiti 98.4 2.7E-06 5.8E-11 61.5 8.2 74 66-152 2-82 (87)
38 cd01814 NTGP5 Ubiquitin-like N 98.3 2.7E-06 5.8E-11 66.2 6.5 84 65-157 4-94 (113)
39 KOG0003 Ubiquitin/60s ribosoma 98.2 3.3E-07 7.2E-12 71.4 0.5 75 66-156 1-75 (128)
40 KOG0004 Ubiquitin/40S ribosoma 98.2 2.4E-06 5.2E-11 69.6 4.5 76 66-157 1-76 (156)
41 PF08817 YukD: WXG100 protein 98.1 6.5E-06 1.4E-10 58.8 6.1 76 65-150 2-78 (79)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.1 3.8E-05 8.3E-10 59.1 9.3 74 65-147 2-76 (111)
43 cd00196 UBQ Ubiquitin-like pro 98.0 4.9E-05 1.1E-09 46.6 7.2 64 73-152 5-68 (69)
44 KOG0005 Ubiquitin-like protein 98.0 1.4E-05 3E-10 56.6 4.7 70 66-151 1-70 (70)
45 KOG0001 Ubiquitin and ubiquiti 97.7 0.00042 9E-09 45.3 8.1 72 68-155 2-73 (75)
46 cd01788 ElonginB Ubiquitin-lik 97.3 0.0013 2.7E-08 51.7 7.6 62 66-144 3-64 (119)
47 KOG4248 Ubiquitin-like protein 97.2 0.00064 1.4E-08 68.8 5.9 70 67-153 4-73 (1143)
48 KOG1639 Steroid reductase requ 97.0 0.002 4.3E-08 56.8 6.4 75 66-152 1-78 (297)
49 cd01770 p47_UBX p47-like ubiqu 96.7 0.015 3.2E-07 42.0 8.3 68 65-146 4-73 (79)
50 PF10302 DUF2407: DUF2407 ubiq 96.4 0.0091 2E-07 45.0 5.5 59 68-140 3-64 (97)
51 PF00789 UBX: UBX domain; Int 96.3 0.043 9.4E-07 38.6 8.6 75 63-151 4-81 (82)
52 COG5417 Uncharacterized small 96.3 0.024 5.2E-07 41.7 7.2 75 64-149 3-79 (81)
53 cd01811 OASL_repeat1 2'-5' oli 95.7 0.062 1.3E-06 39.6 6.9 69 66-150 1-73 (80)
54 PF09379 FERM_N: FERM N-termin 95.3 0.13 2.8E-06 35.6 7.5 70 70-153 1-77 (80)
55 KOG1769 Ubiquitin-like protein 95.1 0.21 4.5E-06 38.3 8.4 74 63-152 18-91 (99)
56 PF14453 ThiS-like: ThiS-like 94.9 0.099 2.1E-06 36.3 5.8 56 66-153 1-56 (57)
57 KOG1872 Ubiquitin-specific pro 94.7 0.072 1.6E-06 50.3 6.0 69 66-151 4-73 (473)
58 PLN02799 Molybdopterin synthas 94.4 0.18 3.9E-06 35.6 6.3 62 76-155 19-80 (82)
59 cd01767 UBX UBX (ubiquitin reg 94.3 0.52 1.1E-05 33.0 8.4 66 65-146 2-71 (77)
60 smart00166 UBX Domain present 94.1 0.64 1.4E-05 32.8 8.6 73 63-150 2-78 (80)
61 PF15044 CLU_N: Mitochondrial 93.9 0.13 2.8E-06 37.0 4.7 57 82-153 1-58 (76)
62 PF11470 TUG-UBL1: GLUT4 regul 93.8 0.36 7.8E-06 34.0 6.7 62 72-149 3-64 (65)
63 KOG3493 Ubiquitin-like protein 93.4 0.049 1.1E-06 39.2 1.8 66 68-149 4-69 (73)
64 KOG4495 RNA polymerase II tran 93.4 0.16 3.4E-06 39.2 4.6 64 66-144 3-66 (110)
65 PF13019 Telomere_Sde2: Telome 93.4 0.52 1.1E-05 38.9 8.0 76 66-155 1-86 (162)
66 cd01772 SAKS1_UBX SAKS1-like U 93.2 0.88 1.9E-05 32.4 8.0 73 64-150 3-77 (79)
67 cd01774 Faf1_like2_UBX Faf1 ik 93.2 1 2.2E-05 32.9 8.5 70 64-149 3-81 (85)
68 TIGR01682 moaD molybdopterin c 92.3 0.56 1.2E-05 33.0 5.9 61 77-155 17-78 (80)
69 TIGR02958 sec_mycoba_snm4 secr 92.2 0.8 1.7E-05 42.8 8.5 79 66-154 3-81 (452)
70 smart00295 B41 Band 4.1 homolo 92.1 1.8 3.9E-05 34.2 9.4 78 64-155 2-85 (207)
71 PLN02560 enoyl-CoA reductase 91.6 0.18 3.9E-06 45.0 3.4 71 43-117 18-92 (308)
72 cd00754 MoaD Ubiquitin domain 91.6 0.67 1.4E-05 32.0 5.6 62 77-155 17-78 (80)
73 TIGR01687 moaD_arch MoaD famil 91.4 1.2 2.7E-05 31.6 7.0 68 76-155 16-86 (88)
74 PF00076 RRM_1: RNA recognitio 90.6 1.2 2.5E-05 28.8 5.8 58 42-100 3-61 (70)
75 PF02597 ThiS: ThiS family; I 89.3 0.95 2.1E-05 30.9 4.7 62 77-154 13-74 (77)
76 PRK06488 sulfur carrier protei 87.4 3 6.4E-05 28.3 6.2 62 66-154 1-62 (65)
77 PF10209 DUF2340: Uncharacteri 87.4 1.4 3E-05 35.0 5.0 61 85-154 26-109 (122)
78 KOG0006 E3 ubiquitin-protein l 85.2 1.6 3.5E-05 40.3 4.9 56 78-149 16-71 (446)
79 PRK08053 sulfur carrier protei 85.1 3.2 6.9E-05 28.4 5.4 63 66-154 1-63 (66)
80 PRK08364 sulfur carrier protei 84.0 6.5 0.00014 27.3 6.7 61 66-154 5-67 (70)
81 COG5227 SMT3 Ubiquitin-like pr 83.1 4.1 8.9E-05 31.2 5.6 67 66-148 25-91 (103)
82 PF11834 DUF3354: Domain of un 82.3 2.2 4.7E-05 30.5 3.7 44 86-151 26-69 (69)
83 cd01773 Faf1_like1_UBX Faf1 ik 80.3 21 0.00045 26.3 8.9 74 63-152 3-80 (82)
84 KOG3391 Transcriptional co-rep 80.2 5.1 0.00011 32.7 5.5 42 116-157 99-140 (151)
85 PF08337 Plexin_cytopl: Plexin 80.2 6.3 0.00014 38.1 7.1 92 64-155 188-291 (539)
86 PF14836 Ubiquitin_3: Ubiquiti 79.6 7.6 0.00017 29.1 6.0 67 77-154 15-81 (88)
87 KOG2086 Protein tyrosine phosp 79.2 4.7 0.0001 37.4 5.7 67 66-146 306-374 (380)
88 PRK11130 moaD molybdopterin sy 77.9 10 0.00023 26.8 6.1 54 85-155 25-79 (81)
89 smart00666 PB1 PB1 domain. Pho 77.4 9.9 0.00021 26.3 5.8 34 67-101 3-36 (81)
90 PRK06944 sulfur carrier protei 77.0 7.9 0.00017 25.9 5.0 62 66-154 1-62 (65)
91 PRK05863 sulfur carrier protei 76.6 15 0.00032 25.1 6.3 62 66-154 1-62 (65)
92 KOG4146 Ubiquitin-like protein 76.3 8.9 0.00019 29.4 5.5 60 84-154 34-98 (101)
93 smart00362 RRM_2 RNA recogniti 75.7 14 0.00031 22.8 5.7 57 41-98 3-59 (72)
94 PF06487 SAP18: Sin3 associate 73.3 25 0.00055 27.5 7.6 75 75-151 36-119 (120)
95 cd06407 PB1_NLP A PB1 domain i 73.2 7.8 0.00017 28.2 4.5 35 66-101 1-35 (82)
96 PF11069 DUF2870: Protein of u 73.0 5.3 0.00011 30.6 3.6 42 122-165 3-44 (98)
97 cd01771 Faf1_UBX Faf1 UBX doma 72.3 33 0.00072 24.6 8.6 70 65-150 4-77 (80)
98 PRK13552 frdB fumarate reducta 70.6 8.4 0.00018 33.0 4.8 37 63-99 2-47 (239)
99 PRK07440 hypothetical protein; 70.3 34 0.00073 23.9 7.1 65 64-154 3-67 (70)
100 PF14259 RRM_6: RNA recognitio 69.9 18 0.00038 23.7 5.3 57 42-99 3-60 (70)
101 smart00360 RRM RNA recognition 69.4 23 0.0005 21.6 5.7 54 42-98 1-58 (71)
102 PF14533 USP7_C2: Ubiquitin-sp 69.0 11 0.00023 31.7 5.0 43 60-102 15-60 (213)
103 PRK05659 sulfur carrier protei 68.7 32 0.00069 23.0 6.7 63 66-154 1-63 (66)
104 PRK07696 sulfur carrier protei 68.5 31 0.00068 23.7 6.5 63 66-154 1-64 (67)
105 smart00666 PB1 PB1 domain. Pho 68.1 30 0.00065 23.8 6.4 51 44-99 16-69 (81)
106 PF07929 PRiA4_ORF3: Plasmid p 66.6 29 0.00064 27.8 7.0 70 79-150 21-95 (179)
107 cd01789 Alp11_N Ubiquitin-like 66.2 11 0.00025 27.0 4.1 33 45-77 19-54 (84)
108 cd00565 ThiS ThiaminS ubiquiti 65.6 20 0.00044 24.1 5.0 58 74-154 5-62 (65)
109 PF14732 UAE_UbL: Ubiquitin/SU 65.3 7.2 0.00016 28.5 2.9 60 84-154 7-70 (87)
110 KOG3206 Alpha-tubulin folding 64.1 19 0.00042 31.3 5.6 82 67-157 3-85 (234)
111 KOG0013 Uncharacterized conser 64.0 16 0.00035 31.8 5.1 68 74-157 155-222 (231)
112 cd01775 CYR1_RA Ubiquitin doma 63.8 16 0.00034 28.0 4.5 35 67-101 4-38 (97)
113 cd01611 GABARAP Ubiquitin doma 63.7 60 0.0013 24.9 7.9 80 53-149 13-102 (112)
114 KOG0012 DNA damage inducible p 63.3 12 0.00025 34.9 4.4 73 67-154 4-77 (380)
115 PF14560 Ubiquitin_2: Ubiquiti 61.7 7.9 0.00017 27.6 2.5 46 44-89 19-68 (87)
116 PF02991 Atg8: Autophagy prote 60.5 65 0.0014 24.5 7.5 67 58-139 9-81 (104)
117 KOG4583 Membrane-associated ER 60.4 6.3 0.00014 36.5 2.2 64 66-143 10-75 (391)
118 PF12053 DUF3534: Domain of un 58.8 52 0.0011 26.7 7.0 75 66-150 1-77 (145)
119 PF00788 RA: Ras association ( 55.4 53 0.0012 22.6 5.9 34 68-101 5-42 (93)
120 cd05992 PB1 The PB1 domain is 55.1 25 0.00054 24.0 4.1 29 74-102 8-37 (81)
121 PF00564 PB1: PB1 domain; Int 54.7 40 0.00087 23.1 5.1 53 43-100 16-71 (84)
122 PF03931 Skp1_POZ: Skp1 family 53.6 16 0.00034 24.7 2.8 26 66-91 1-29 (62)
123 PRK06083 sulfur carrier protei 53.4 86 0.0019 22.9 6.9 64 65-154 18-81 (84)
124 smart00314 RA Ras association 52.4 60 0.0013 22.8 5.8 27 75-101 15-41 (90)
125 TIGR01683 thiS thiamine biosyn 51.6 37 0.00079 22.8 4.4 59 73-154 3-61 (64)
126 PF12436 USP7_ICP0_bdg: ICP0-b 51.4 18 0.00039 31.0 3.5 62 79-155 88-154 (249)
127 cd01764 Urm1 Urm1-like ubuitin 50.9 48 0.001 24.5 5.2 61 83-154 26-91 (94)
128 PF00564 PB1: PB1 domain; Int 50.9 44 0.00096 22.9 4.8 36 66-102 2-38 (84)
129 cd01768 RA RA (Ras-associating 50.4 84 0.0018 21.9 7.8 66 75-153 12-85 (87)
130 TIGR03221 muco_delta muconolac 50.0 15 0.00032 27.7 2.4 38 77-120 5-45 (90)
131 PF02192 PI3K_p85B: PI3-kinase 49.7 26 0.00055 25.5 3.5 25 78-102 2-26 (78)
132 PF01524 Gemini_V1: Geminiviru 49.3 9.5 0.00021 28.1 1.2 27 39-67 3-29 (78)
133 PF08825 E2_bind: E2 binding d 48.3 25 0.00054 25.8 3.3 64 80-152 1-70 (84)
134 PRK06437 hypothetical protein; 48.1 89 0.0019 21.5 6.3 55 75-154 10-64 (67)
135 PF13180 PDZ_2: PDZ domain; PD 47.2 36 0.00078 23.4 3.9 33 49-82 47-80 (82)
136 cd01766 Ufm1 Urm1-like ubiquit 46.7 1E+02 0.0022 22.9 6.2 75 66-155 5-80 (82)
137 PF02824 TGS: TGS domain; Int 46.5 88 0.0019 21.0 5.6 30 69-100 2-31 (60)
138 PF04126 Cyclophil_like: Cyclo 45.4 21 0.00045 27.5 2.7 29 66-95 1-29 (120)
139 COG1977 MoaD Molybdopterin con 45.3 37 0.00079 24.4 3.8 56 85-155 27-82 (84)
140 PF09269 DUF1967: Domain of un 45.3 12 0.00026 26.2 1.2 17 134-150 46-62 (69)
141 cd06396 PB1_NBR1 The PB1 domai 44.5 62 0.0013 23.8 4.9 51 45-99 16-68 (81)
142 PTZ00380 microtubule-associate 43.1 1.4E+02 0.003 23.6 7.0 52 52-104 15-69 (121)
143 TIGR03595 Obg_CgtA_exten Obg f 42.2 17 0.00037 25.5 1.6 18 134-151 46-63 (69)
144 cd00590 RRM RRM (RNA recogniti 40.4 87 0.0019 19.1 6.9 53 42-98 4-60 (74)
145 PF10790 DUF2604: Protein of U 40.1 90 0.002 22.6 5.0 65 74-151 4-69 (76)
146 TIGR01659 sex-lethal sex-letha 39.4 76 0.0016 28.7 5.7 55 41-98 111-169 (346)
147 cd06408 PB1_NoxR The PB1 domai 39.4 84 0.0018 23.4 4.9 35 66-101 3-37 (86)
148 TIGR01659 sex-lethal sex-letha 38.8 86 0.0019 28.4 5.9 59 41-100 197-257 (346)
149 COG2104 ThiS Sulfur transfer p 36.9 1.5E+02 0.0032 20.9 5.8 63 66-154 3-65 (68)
150 cd06405 PB1_Mekk2_3 The PB1 do 36.4 1.5E+02 0.0032 22.0 5.7 48 45-98 16-63 (79)
151 cd00989 PDZ_metalloprotease PD 36.4 1.1E+02 0.0024 20.2 4.9 32 50-82 46-77 (79)
152 PF07340 Herpes_IE1: Cytomegal 35.8 65 0.0014 30.2 4.7 28 27-54 35-70 (392)
153 PLN03134 glycine-rich RNA-bind 35.3 1.3E+02 0.0028 23.6 5.8 55 41-98 38-96 (144)
154 PF00794 PI3K_rbd: PI3-kinase 35.2 1.2E+02 0.0027 22.1 5.4 37 62-98 13-50 (106)
155 cd06407 PB1_NLP A PB1 domain i 35.1 1.7E+02 0.0037 21.1 6.5 50 44-98 15-68 (82)
156 PRK07570 succinate dehydrogena 35.1 81 0.0018 27.3 5.0 34 66-99 3-44 (250)
157 cd05992 PB1 The PB1 domain is 34.9 1.4E+02 0.0031 20.1 6.0 50 45-99 16-69 (81)
158 KOG4147 Uncharacterized conser 34.5 14 0.0003 29.3 0.1 68 85-152 33-112 (127)
159 smart00143 PI3K_p85B PI3-kinas 33.7 50 0.0011 24.2 2.9 23 78-100 2-24 (78)
160 cd04938 TGS_Obg-like TGS_Obg-l 33.7 96 0.0021 22.0 4.4 50 79-151 25-75 (76)
161 PRK08640 sdhB succinate dehydr 33.6 76 0.0017 27.4 4.6 36 63-98 3-45 (249)
162 PRK11840 bifunctional sulfur c 33.0 1.4E+02 0.0031 27.3 6.3 68 66-160 1-68 (326)
163 COG5100 NPL4 Nuclear pore prot 31.6 1.5E+02 0.0033 28.6 6.4 70 66-151 1-77 (571)
164 COG4829 CatC1 Muconolactone de 30.8 37 0.00081 25.9 1.9 36 78-119 7-45 (98)
165 COG5131 URM1 Ubiquitin-like pr 30.5 2.1E+02 0.0045 21.9 5.8 30 120-154 62-93 (96)
166 cd00988 PDZ_CTP_protease PDZ d 30.2 1.1E+02 0.0025 20.5 4.2 35 50-84 49-83 (85)
167 PF00276 Ribosomal_L23: Riboso 29.4 91 0.002 22.8 3.8 27 76-102 21-47 (91)
168 PF01376 Enterotoxin_b: Heat-l 28.9 85 0.0019 23.8 3.5 38 63-100 33-70 (102)
169 cd06406 PB1_P67 A PB1 domain i 27.4 2E+02 0.0043 21.2 5.2 28 77-104 12-39 (80)
170 KOG0071 GTP-binding ADP-ribosy 27.3 77 0.0017 26.5 3.3 39 24-62 98-147 (180)
171 PF12754 Blt1: Cell-cycle cont 27.3 21 0.00045 32.5 0.0 79 66-154 79-178 (309)
172 PLN03213 repressor of silencin 27.3 2.4E+02 0.0052 28.0 7.1 57 42-99 15-71 (759)
173 PF02426 MIase: Muconolactone 27.2 60 0.0013 24.3 2.5 37 77-119 6-45 (91)
174 cd00986 PDZ_LON_protease PDZ d 26.6 1.5E+02 0.0032 20.0 4.3 32 50-82 41-73 (79)
175 cd01777 SNX27_RA Ubiquitin dom 26.5 2.8E+02 0.0061 20.8 6.1 38 67-104 3-40 (87)
176 COG0089 RplW Ribosomal protein 26.1 1E+02 0.0023 23.3 3.6 30 75-104 21-50 (94)
177 cd06396 PB1_NBR1 The PB1 domai 25.8 1.8E+02 0.0038 21.4 4.7 35 67-102 2-38 (81)
178 cd01787 GRB7_RA RA (RAS-associ 25.7 1.9E+02 0.0041 21.5 4.9 35 67-101 4-38 (85)
179 TIGR01661 ELAV_HUD_SF ELAV/HuD 24.7 2.2E+02 0.0048 24.4 5.9 57 42-99 8-66 (352)
180 TIGR01628 PABP-1234 polyadenyl 24.7 2E+02 0.0043 26.9 6.0 57 42-99 5-63 (562)
181 PF10407 Cytokin_check_N: Cdc1 23.9 1.2E+02 0.0026 21.9 3.4 28 77-104 4-32 (73)
182 CHL00030 rpl23 ribosomal prote 23.7 1.2E+02 0.0025 22.8 3.5 26 76-101 20-45 (93)
183 COG1163 DRG Predicted GTPase [ 23.3 2.4E+02 0.0051 26.4 6.0 88 48-152 274-364 (365)
184 PRK08453 fliD flagellar cappin 23.2 1.3E+02 0.0028 30.2 4.6 29 66-97 131-159 (673)
185 TIGR03636 L23_arch archaeal ri 23.2 1.4E+02 0.0029 21.6 3.6 27 76-102 15-41 (77)
186 PF13085 Fer2_3: 2Fe-2S iron-s 23.2 1.8E+02 0.004 22.3 4.6 33 67-99 1-42 (110)
187 PF14268 YoaP: YoaP-like 22.6 52 0.0011 21.6 1.2 14 117-130 19-32 (44)
188 PRK12386 fumarate reductase ir 22.6 1.4E+02 0.0029 26.1 4.2 36 63-98 2-42 (251)
189 cd01669 TGS_Ygr210_C TGS_Ygr21 22.3 2.2E+02 0.0048 20.2 4.6 22 79-100 24-45 (76)
190 PRK05738 rplW 50S ribosomal pr 22.2 1.4E+02 0.0031 22.0 3.7 28 75-102 20-47 (92)
191 COG4925 Uncharacterized conser 22.0 1.4E+02 0.0031 24.6 3.9 39 56-94 41-79 (166)
192 TIGR02159 PA_CoA_Oxy4 phenylac 22.0 1.2E+02 0.0025 24.4 3.4 74 63-144 15-90 (146)
193 PRK12385 fumarate reductase ir 21.9 1.8E+02 0.0039 24.9 4.7 35 65-99 6-48 (244)
194 PF07319 DnaI_N: Primosomal pr 21.5 86 0.0019 23.0 2.4 15 26-40 18-32 (94)
195 cd06411 PB1_p51 The PB1 domain 21.4 1.8E+02 0.0038 21.4 3.9 27 78-104 9-35 (78)
196 cd01666 TGS_DRG_C TGS_DRG_C: 21.3 1.7E+02 0.0038 20.8 3.9 34 66-99 2-38 (75)
197 COG3266 DamX Uncharacterized p 21.2 3.1E+02 0.0068 24.8 6.2 51 49-99 220-271 (292)
198 PRK14548 50S ribosomal protein 21.2 1.5E+02 0.0033 21.7 3.6 27 76-102 22-48 (84)
199 COG1443 Idi Isopentenyldiphosp 20.4 49 0.0011 28.0 1.0 49 110-158 55-109 (185)
200 PF00025 Arf: ADP-ribosylation 20.2 2.3E+02 0.005 22.1 4.8 38 25-62 96-144 (175)
201 PF08783 DWNN: DWNN domain; I 20.1 1.7E+02 0.0036 21.1 3.6 22 79-100 13-35 (74)
No 1
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.57 E-value=1.2e-14 Score=103.64 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=62.8
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+.+.|+++.+.|++++||+|||++|++.+...++++ +|+|.|+ +++|+.+|.+|||++|
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~q---------------rLi~~Gk-~L~D~~tL~~ygi~~~ 65 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKI---------------VLKKWYT-IFKDHISLGDYEIHDG 65 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHE---------------EEEeCCc-CCCCCCCHHHcCCCCC
Confidence 89999999999999999999999999999999987666654 7999995 6678899999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
++||+.
T Consensus 66 stv~l~ 71 (73)
T cd01791 66 MNLELY 71 (73)
T ss_pred CEEEEE
Confidence 999874
No 2
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.54 E-value=3.7e-14 Score=101.47 Aligned_cols=73 Identities=32% Similarity=0.496 Sum_probs=64.5
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
.|+|+|+...|+.++|+|++++||+|||+.|++.....+.++ +|+|.|+.| +|+ +|.+|||+|
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~q---------------rL~~~Gk~L-~d~-~L~~~gi~~ 63 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERL---------------ALLHRETRL-SSG-KLQDLGLGD 63 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHE---------------EEEECCcCC-CCC-cHHHcCCCC
Confidence 499999999999999999999999999999999986555543 899999755 566 899999999
Q ss_pred CCEEEEEeee
Q 030379 145 NSQVQFVPFV 154 (178)
Q Consensus 145 gd~L~F~~rl 154 (178)
|++|+++.-+
T Consensus 64 ~~~i~l~~~~ 73 (78)
T cd01804 64 GSKLTLVPTV 73 (78)
T ss_pred CCEEEEEeec
Confidence 9999999876
No 3
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.46 E-value=3.2e-13 Score=96.61 Aligned_cols=72 Identities=25% Similarity=0.310 Sum_probs=62.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEE--ecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCL--SHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L--~~~g~kLldD~~tL~dyGIk 143 (178)
|.|+|+..+|+.+.+.|++++||+|||+.|++.....+.++ +| +|.|+ .++|+.+|.+|||+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~q---------------rL~~~~~G~-~L~D~~tL~~~gi~ 66 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQ---------------RLAHLDSRE-VLQDGVPLVSQGLG 66 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHE---------------EEEeccCCC-CCCCCCCHHHcCCC
Confidence 89999999999999999999999999999999986545532 66 78886 45688899999999
Q ss_pred CCCEEEEEee
Q 030379 144 NNSQVQFVPF 153 (178)
Q Consensus 144 dgd~L~F~~r 153 (178)
+|++|+++.+
T Consensus 67 ~gs~l~l~~~ 76 (80)
T cd01792 67 PGSTVLLVVQ 76 (80)
T ss_pred CCCEEEEEEE
Confidence 9999987765
No 4
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.45 E-value=5.3e-13 Score=92.50 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=64.8
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|+++.||.+||..|+......+.+ ..|+|+|+.| +|+.+|.+|||.+|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~---------------qrL~~~g~~L-~d~~tl~~~~i~~g 64 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ---------------QRLIYSGKQM-NDDKTAADYKLEGG 64 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhh---------------EEEEECCeEc-cCCCCHHHcCCCCC
Confidence 8999999999999999999999999999999987654442 2688999766 67789999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|+++.+++
T Consensus 65 ~~i~l~~~~~ 74 (76)
T cd01806 65 SVLHLVLALR 74 (76)
T ss_pred CEEEEEEEcc
Confidence 9999998863
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.43 E-value=6.4e-13 Score=93.35 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=63.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|+++.||++||+.|+......+.. +.|+|+|+.| +|+.+|.+|||++|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~---------------q~L~~~G~~L-~d~~~L~~~~i~~~ 64 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQ---------------QRLLFKGKAL-ADDKRLSDYSIGPN 64 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH---------------eEEEECCEEC-CCCCCHHHCCCCCC
Confidence 8999999999999999999999999999999998654442 3799999766 67899999999999
Q ss_pred CEEEEEee
Q 030379 146 SQVQFVPF 153 (178)
Q Consensus 146 d~L~F~~r 153 (178)
++|+.+.+
T Consensus 65 ~~l~l~~~ 72 (74)
T cd01807 65 AKLNLVVR 72 (74)
T ss_pred CEEEEEEc
Confidence 99998865
No 6
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.43 E-value=8.2e-13 Score=91.54 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=64.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|+++.||++||+.|+......+.+ ..|+|+|+.| +|+.+|.+|||.+|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~---------------q~L~~~g~~L-~d~~~L~~~~i~~~ 64 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGKQL-EDGRTLSDYNIQKE 64 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHH---------------eEEEECCEEC-CCCCcHHHcCCCCC
Confidence 8999999999999999999999999999999998654442 2788999755 68889999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|++..++.
T Consensus 65 ~~i~l~~~~~ 74 (76)
T cd01803 65 STLHLVLRLR 74 (76)
T ss_pred CEEEEEEEcc
Confidence 9999999874
No 7
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.43 E-value=8.3e-13 Score=92.44 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=62.6
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc--ccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND--MEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~--~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
|+|+|+..+|..+.+.|++++||.+||+.|+..... .+.+ .+|+|.|+.| +|+.+|.+|||+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~---------------q~L~~~G~~L-~d~~~L~~~~i~ 64 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQ---------------QKLIYSGKIL-KDDTTLEEYKID 64 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhH---------------eEEEECCEEc-cCCCCHHHcCCC
Confidence 899999999999999999999999999999998764 4442 2789999755 678999999999
Q ss_pred CCCEEEEEee
Q 030379 144 NNSQVQFVPF 153 (178)
Q Consensus 144 dgd~L~F~~r 153 (178)
+|++|++..+
T Consensus 65 ~~~~i~~~~~ 74 (77)
T cd01805 65 EKDFVVVMVS 74 (77)
T ss_pred CCCEEEEEEe
Confidence 9999987754
No 8
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.41 E-value=1.2e-12 Score=89.79 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=62.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|..+++.|++++||.+||+.|++.....+.++ .|+|+|+ +++|+.+|.+|||++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q---------------~L~~~g~-~L~d~~~L~~~~i~~~ 64 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQ---------------RLIYSGR-VLKDDETLSEYKVEDG 64 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHe---------------EEEECCE-ECCCcCcHHHCCCCCC
Confidence 79999999999999999999999999999999986544432 6889996 5578899999999999
Q ss_pred CEEEEEee
Q 030379 146 SQVQFVPF 153 (178)
Q Consensus 146 d~L~F~~r 153 (178)
++|+++.|
T Consensus 65 ~~l~l~~~ 72 (72)
T cd01809 65 HTIHLVKR 72 (72)
T ss_pred CEEEEEeC
Confidence 99998764
No 9
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.36 E-value=3.6e-12 Score=88.87 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=59.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|. ..|.|++++||.+||+.|++.....+. +++|+|.|+.| +|+.+|.+|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~---------------~~~Li~~Gk~L-~d~~tL~~~~i~~~ 63 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQE---------------QLVLIFAGKIL-KDTDTLTQHNIKDG 63 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHH---------------HEEEEECCeEc-CCCCcHHHcCCCCC
Confidence 57999999996 589999999999999999998763333 34799999755 67889999999999
Q ss_pred CEEEEEee
Q 030379 146 SQVQFVPF 153 (178)
Q Consensus 146 d~L~F~~r 153 (178)
++|+++.|
T Consensus 64 stl~l~~~ 71 (71)
T cd01808 64 LTVHLVIK 71 (71)
T ss_pred CEEEEEEC
Confidence 99998764
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.35 E-value=3.7e-12 Score=89.59 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=62.5
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCE
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 147 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~ 147 (178)
|+|+..+|+.++++|.+++||++||..|+......++ +++|+|+|+.| .|+.+|.+|||++|++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~---------------~q~L~~~G~~L-~D~~tL~~~~i~~~~t 64 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQAD---------------QFWLSFEGRPM-EDEHPLGEYGLKPGCT 64 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHH---------------HeEEEECCEEC-CCCCCHHHcCCCCCCE
Confidence 5789999999999999999999999999988764444 33899999766 5779999999999999
Q ss_pred EEEEeeee
Q 030379 148 VQFVPFVL 155 (178)
Q Consensus 148 L~F~~rl~ 155 (178)
|+...++.
T Consensus 65 l~l~~~l~ 72 (74)
T cd01810 65 VFMNLRLR 72 (74)
T ss_pred EEEEEEcc
Confidence 99988864
No 11
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.34 E-value=4.8e-12 Score=90.96 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=62.7
Q ss_pred eEEEEEccCCce-EEEE-eCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTS-FDVA-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~-~~V~-V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
|+|+|+..+|.. +.+. |.++.||.+||..|+......+. +.+|+|.|+. ++|+.+|.+|||+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~---------------~QrLi~~Gk~-L~D~~tL~~y~i~ 64 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPE---------------CQRLFYRGKQ-MEDGHTLFDYNVG 64 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHH---------------HeEEEeCCEE-CCCCCCHHHcCCC
Confidence 899999999997 6884 88999999999999998754333 2389999965 5889999999999
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+|++|++..|.
T Consensus 65 ~~~~i~l~~~~ 75 (78)
T cd01797 65 LNDIIQLLVRQ 75 (78)
T ss_pred CCCEEEEEEec
Confidence 99999998875
No 12
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.34 E-value=5.7e-12 Score=86.34 Aligned_cols=68 Identities=26% Similarity=0.386 Sum_probs=58.9
Q ss_pred EccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEE
Q 030379 71 LKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQF 150 (178)
Q Consensus 71 ~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F 150 (178)
+..+|+.|.|.|+++.||.+||+.|+......+. ...|+|.|+.| +|+.+|.+|||++|++|+.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~---------------~~~L~~~G~~L-~d~~tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPE---------------QQRLIYNGKEL-DDDKTLSDYGIKDGSTIHL 64 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGG---------------GEEEEETTEEE-STTSBTGGGTTSTTEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccc---------------cceeeeeeecc-cCcCcHHHcCCCCCCEEEE
Confidence 3568999999999999999999999999875444 33899999766 8999999999999999988
Q ss_pred Eeee
Q 030379 151 VPFV 154 (178)
Q Consensus 151 ~~rl 154 (178)
..+-
T Consensus 65 ~~k~ 68 (69)
T PF00240_consen 65 VIKP 68 (69)
T ss_dssp EESS
T ss_pred EEec
Confidence 7764
No 13
>PTZ00044 ubiquitin; Provisional
Probab=99.32 E-value=1.1e-11 Score=86.76 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=65.2
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|.|+..+|..+.+.|.++.||++||..|+......+. +.+|+|+|+.| +|+.+|.+|||.+|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~L~~~g~~L-~d~~~l~~~~i~~~ 64 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVK---------------QIRLIYSGKQM-SDDLKLSDYKVVPG 64 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHH---------------HeEEEECCEEc-cCCCcHHHcCCCCC
Confidence 789999999999999999999999999999999864443 23799999765 68899999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|+...+++
T Consensus 65 ~~i~l~~~~~ 74 (76)
T PTZ00044 65 STIHMVLQLR 74 (76)
T ss_pred CEEEEEEEcc
Confidence 9999998864
No 14
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.32 E-value=1.1e-11 Score=93.79 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=67.2
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
+-..|.|+|+..+|+.+.+.|.+++||.+||+.|+......+. ...|+|+|+.| +|+.+|.+||
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~---------------~QrLi~~Gk~L-~D~~tL~dy~ 87 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVA---------------QQHLIWNNMEL-EDEYCLNDYN 87 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChH---------------HEEEEECCEEC-CCCCcHHHcC
Confidence 3457999999999999999999999999999999998753333 23799999755 7889999999
Q ss_pred CCCCCEEEEEeeee
Q 030379 142 VRNNSQVQFVPFVL 155 (178)
Q Consensus 142 Ikdgd~L~F~~rl~ 155 (178)
|++|++|+.+.+++
T Consensus 88 I~~~stL~l~~~l~ 101 (103)
T cd01802 88 ISEGCTLKLVLAMR 101 (103)
T ss_pred CCCCCEEEEEEecC
Confidence 99999999998874
No 15
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.31 E-value=9.6e-12 Score=87.49 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=61.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+. ++.+.+.|+++.||++||..|+......+. +.+|+|+|+.| +|+.+|.+|||+++
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~---------------~q~Li~~Gk~L-~D~~tL~~~~i~~~ 62 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVE---------------DQVLLLAGVPL-EDDATLGQCGVEEL 62 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHH---------------HEEEEECCeEC-CCCCCHHHcCCCCC
Confidence 7899975 467899999999999999999998764433 23899999755 78899999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|+.+.|+.
T Consensus 63 ~tl~l~~~l~ 72 (74)
T cd01793 63 CTLEVAGRLL 72 (74)
T ss_pred CEEEEEEecC
Confidence 9999998874
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.31 E-value=9.3e-12 Score=86.42 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=60.7
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCE
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 147 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~ 147 (178)
|+|+..+|..+++.|+++.||++||+.|+......+. .+.|+|+|+.| +|+.+|.+|||++|++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~---------------~q~Li~~G~~L-~d~~~l~~~~i~~~st 64 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPD---------------QLRVIFAGKEL-RNTTTIQECDLGQQSI 64 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHH---------------HeEEEECCeEC-CCCCcHHHcCCCCCCE
Confidence 5788899999999999999999999999999764333 23899999765 7889999999999999
Q ss_pred EEEEee
Q 030379 148 VQFVPF 153 (178)
Q Consensus 148 L~F~~r 153 (178)
||.+.|
T Consensus 65 l~l~~~ 70 (70)
T cd01798 65 LHAVRR 70 (70)
T ss_pred EEEEeC
Confidence 998765
No 17
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.30 E-value=1.3e-11 Score=84.73 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=59.4
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+.. |..+++.|++++||++||..|+......++++ +|.|.|+.| +|+.+|.+|||++|
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q---------------~L~~~g~~l-~d~~~L~~~~i~~g 63 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQ---------------KLIFKGKER-DDAETLDMSGVKDG 63 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHe---------------EEeeCCccc-CccCcHHHcCCCCC
Confidence 68999765 99999999999999999999999987655543 788999765 67899999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
++|+.+
T Consensus 64 ~~l~v~ 69 (71)
T cd01812 64 SKVMLL 69 (71)
T ss_pred CEEEEe
Confidence 999875
No 18
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.29 E-value=1.3e-11 Score=87.03 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=58.8
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCE
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 147 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~ 147 (178)
+.|+..+|+.++++|++++||++||..|+......++. .+|+|.|+. ++|+.+|.+|||++|++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~---------------q~Li~~G~~-L~D~~~l~~~~i~~~~t 64 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCC---------------QRWFFSGKL-LTDKTRLQETKIQKDYV 64 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHH---------------eEEEECCeE-CCCCCCHHHcCCCCCCE
Confidence 35788899999999999999999999999887644442 279999975 57889999999999999
Q ss_pred EEEEe
Q 030379 148 VQFVP 152 (178)
Q Consensus 148 L~F~~ 152 (178)
||.+.
T Consensus 65 v~~~~ 69 (70)
T cd01794 65 VQVIV 69 (70)
T ss_pred EEEEe
Confidence 99875
No 19
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.28 E-value=1.8e-11 Score=87.19 Aligned_cols=69 Identities=17% Similarity=0.322 Sum_probs=59.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec---CCccccCCcchhhhcCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH---QNQKLLDENSALQDCGV 142 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~---~g~kLldD~~tL~dyGI 142 (178)
|+|+| +..|+.|+|+|++++||+|||++|+......+++| .|+| .|+ +++|+.+|.+|||
T Consensus 1 ~~i~v-k~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~Q---------------KLi~~~~~Gk-~l~D~~~L~~~~i 63 (74)
T cd01813 1 VPVIV-KWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQ---------------KLLGLKVKGK-PAEDDVKISALKL 63 (74)
T ss_pred CEEEE-EECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHE---------------EEEeecccCC-cCCCCcCHHHcCC
Confidence 67888 78999999999999999999999999987666654 6775 775 6678999999999
Q ss_pred CCCCEEEEE
Q 030379 143 RNNSQVQFV 151 (178)
Q Consensus 143 kdgd~L~F~ 151 (178)
++|+.|+++
T Consensus 64 ~~g~~i~lm 72 (74)
T cd01813 64 KPNTKIMMM 72 (74)
T ss_pred CCCCEEEEE
Confidence 999998875
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.26 E-value=2.1e-11 Score=85.66 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=57.8
Q ss_pred EEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCC
Q 030379 68 ISILKL-DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNS 146 (178)
Q Consensus 68 LtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd 146 (178)
|+|+.. +|..+.|.|++++||++||..|+......+. +.+|+|+|+.|.|+..+|.+|||++|+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~---------------~q~Li~~Gk~L~D~~~~L~~~gi~~~~ 65 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPAS---------------QQQLIYNGRELVDNKRLLALYGVKDGD 65 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHH---------------HeEEEECCeEccCCcccHHHcCCCCCC
Confidence 567777 8999999999999999999999999765444 238999998776556799999999999
Q ss_pred EEEE
Q 030379 147 QVQF 150 (178)
Q Consensus 147 ~L~F 150 (178)
.|++
T Consensus 66 ~l~l 69 (71)
T cd01796 66 LVVL 69 (71)
T ss_pred EEEE
Confidence 9876
No 21
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.26 E-value=2.4e-11 Score=88.66 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=58.9
Q ss_pred ceEEEEEccCCceEEEE--eCCCCcHHHHHHHHHHHhc-cc-cccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 65 AMRISILKLDGTSFDVA--VMNSATVKDLKLAIKKKVN-DM-EQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~--V~~sATV~DLKkAI~~~~~-~~-~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
.|+|+|++.+++.++++ +++++||+|||..|+...+ .+ +++ ..|+|.|+ +++|+.+|.+|
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~---------------QrLIy~GK-iLkD~~tL~~~ 64 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQD---------------QRLIYSGK-LLPDHLKLRDV 64 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhH---------------eEEEEcCe-eccchhhHHHH
Confidence 48999999999995555 4899999999999999875 23 232 28999996 55889999999
Q ss_pred C--CCCCCEEEEE
Q 030379 141 G--VRNNSQVQFV 151 (178)
Q Consensus 141 G--Ikdgd~L~F~ 151 (178)
+ |.+|.++|++
T Consensus 65 ~~~~~~~~tiHLV 77 (79)
T cd01790 65 LRKQDEYHMVHLV 77 (79)
T ss_pred hhcccCCceEEEE
Confidence 7 9999999986
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.13 E-value=2e-10 Score=81.37 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=59.1
Q ss_pred ccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEE
Q 030379 72 KLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 151 (178)
Q Consensus 72 k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~ 151 (178)
+++|+.++|+|+.++||.+||..|+......+.+ ..|+|.|. +++|+.+|.+|||++|++|+++
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~---------------q~L~~~G~-~L~d~~tL~~~~i~~g~~l~v~ 67 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGK---------------QKLQYEGI-FIKDSNSLAYYNLANGTIIHLQ 67 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHH---------------EEEEECCE-EcCCCCcHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999987654443 27999996 5577899999999999999999
Q ss_pred eeeec
Q 030379 152 PFVLS 156 (178)
Q Consensus 152 ~rl~~ 156 (178)
.+++.
T Consensus 68 ~~~~g 72 (76)
T cd01800 68 LKERG 72 (76)
T ss_pred EecCC
Confidence 88743
No 23
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.12 E-value=2.4e-10 Score=75.84 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=54.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+ ..+.+.|++++||++||..|+..+...+.+ .+|+|.|+.| +|+.+|.+|||++|
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~---------------~~L~~~g~~L-~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQ---------------QRLIYKGKVL-EDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHH---------------EEEEECCEEC-CCCCCHHHcCCcCC
Confidence 789998888 789999999999999999999998754442 3788999755 67799999999998
Q ss_pred C
Q 030379 146 S 146 (178)
Q Consensus 146 d 146 (178)
+
T Consensus 64 ~ 64 (64)
T smart00213 64 S 64 (64)
T ss_pred C
Confidence 6
No 24
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=107.01 Aligned_cols=80 Identities=19% Similarity=0.366 Sum_probs=69.1
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..++|+|++.++ +++|.|+.++||.+||.+|...|...++ +.||||.|+ +++|.++|..|||+
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~d---------------qlvLIfaGr-ILKD~dTL~~~gI~ 76 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPD---------------QLVLIYAGR-ILKDDDTLKQYGIQ 76 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChh---------------HeeeeecCc-cccChhhHHHcCCC
Confidence 359999988777 9999999999999999999999975555 349999996 55799999999999
Q ss_pred CCCEEEEEeeeecCCcc
Q 030379 144 NNSQVQFVPFVLSKGSG 160 (178)
Q Consensus 144 dgd~L~F~~rl~~~~~~ 160 (178)
||-+||.|++...+-..
T Consensus 77 Dg~TvHLVik~~~~~~~ 93 (493)
T KOG0010|consen 77 DGHTVHLVIKSQPRPTG 93 (493)
T ss_pred CCcEEEEEeccCCCCCC
Confidence 99999999998755444
No 25
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=3.7e-10 Score=102.50 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=62.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc--ccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND--MEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~--~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
|+|+|+..+|+.|.|.|+.+.||.+||+.|+..... ++.. ..+|+|.|+ +++|+.+|.+|||+
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~--------------~QkLIy~Gk-iL~Dd~tL~dy~I~ 65 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVA--------------QQKLIYSGK-ILSDDKTVREYKIK 65 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChh--------------HeEEEECCE-ECCCCCcHHHcCCC
Confidence 899999999999999999999999999999998651 3321 238999997 45788899999999
Q ss_pred CCCEEEEEee
Q 030379 144 NNSQVQFVPF 153 (178)
Q Consensus 144 dgd~L~F~~r 153 (178)
+|++|++...
T Consensus 66 e~~~Ivvmv~ 75 (378)
T TIGR00601 66 EKDFVVVMVS 75 (378)
T ss_pred CCCEEEEEec
Confidence 9999887754
No 26
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.04 E-value=1e-09 Score=73.60 Aligned_cols=67 Identities=25% Similarity=0.385 Sum_probs=56.9
Q ss_pred EEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEE
Q 030379 70 ILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQ 149 (178)
Q Consensus 70 V~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~ 149 (178)
|+..+|..+.+.+++++||.+||+.|++.+...+.+ .+|+|.|+.| +|+.+|.+|||.+|++|+
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~---------------~~l~~~g~~l-~d~~~l~~~~v~~~~~i~ 65 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQ---------------QRLIYAGKIL-KDDKTLSDYGIQDGSTLH 65 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHH---------------EEEEECCcCC-CCcCCHHHCCCCCCCEEE
Confidence 666789999999999999999999999998754443 3778999655 788999999999999999
Q ss_pred EEe
Q 030379 150 FVP 152 (178)
Q Consensus 150 F~~ 152 (178)
++.
T Consensus 66 v~~ 68 (69)
T cd01769 66 LVL 68 (69)
T ss_pred EEE
Confidence 864
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.02 E-value=2.5e-09 Score=77.85 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=68.7
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
+....|+|.|+..+|+.+.+.|..+.|+..||.+++......+. ++.|+|+|..| +++.|+.+|
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~---------------~~rf~f~G~~L-~~~~T~~~l 70 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMN---------------SVRFLFDGQRI-RDNQTPDDL 70 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCcc---------------ceEEEECCeEC-CCCCCHHHc
Confidence 44567999999999999999999999999999999999764333 45899999877 678899999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
||.|||+|+++-++.
T Consensus 71 ~m~d~d~I~v~l~l~ 85 (87)
T cd01763 71 GMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCCCEEEEEEecc
Confidence 999999999998764
No 28
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.91 E-value=6e-09 Score=72.09 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=60.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|.++.||..|..++.+.....+. .++.|.|+|+.| ++++|+.++||.+|
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~--------------~~~~l~fdG~~L-~~~~T~~~~~ied~ 65 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE--------------ESIRLIFDGKRL-DPNDTPEDLGIEDG 65 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT---------------TTEEEEETTEEE--TTSCHHHHT-STT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc--------------ceEEEEECCEEc-CCCCCHHHCCCCCC
Confidence 799999999999999999999999999999998765442 156899999877 67789999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
|+|.++
T Consensus 66 d~Idv~ 71 (72)
T PF11976_consen 66 DTIDVI 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 998875
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.88 E-value=5.6e-09 Score=74.77 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=52.7
Q ss_pred cCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC-CCCEEEEE
Q 030379 73 LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR-NNSQVQFV 151 (178)
Q Consensus 73 ~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk-dgd~L~F~ 151 (178)
..|..+.+.|+++.||++||..|+......+..| .| |.|+.|.+|+.+|.+|||+ ||++|+.-
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~Q---------------rL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQ---------------RW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHE---------------EE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 3566788999999999999999999987655532 67 8998888899999999999 78988763
No 30
>PLN02560 enoyl-CoA reductase
Probab=98.86 E-value=7e-09 Score=91.82 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=58.5
Q ss_pred eEEEEEccCCceE---EEEeCCCCcHHHHHHHHHHHhcc-ccccccCccccccccccceeEEecC---Cc---cccCCcc
Q 030379 66 MRISILKLDGTSF---DVAVMNSATVKDLKLAIKKKVND-MEQSNLGHRHISWKHVWANYCLSHQ---NQ---KLLDENS 135 (178)
Q Consensus 66 MkLtV~k~dg~~~---~V~V~~sATV~DLKkAI~~~~~~-~~~r~~g~~~ISW~~VW~~~~L~~~---g~---kLldD~~ 135 (178)
|+|+|+.++|+.+ .|+|++++||+|||++|+++.+. ++.|+ .|++. |+ +.++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~Rq---------------RL~~~~~~gk~~g~~L~d~k 65 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQ---------------RLTLPLPPGKTRPTVLDDSK 65 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhhe---------------EEEEecCCCCcCccccCCCC
Confidence 7899998889887 79999999999999999999764 45653 35542 21 3567889
Q ss_pred hhhhcCCCCCCEEEEEe
Q 030379 136 ALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 136 tL~dyGIkdgd~L~F~~ 152 (178)
+|+|+|+++|++|+|+.
T Consensus 66 tL~d~gv~~gstLy~kD 82 (308)
T PLN02560 66 SLKDYGLGDGGTVVFKD 82 (308)
T ss_pred CHHhcCCCCCceEEEEe
Confidence 99999999999999985
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.85 E-value=5.3e-09 Score=75.85 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHHHHhc--cccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 83 MNSATVKDLKLAIKKKVN--DMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 83 ~~sATV~DLKkAI~~~~~--~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
|-++||.+||..|+..+. .++. .+++|+|.|+. ++|+.+|.+|||++|++||++++
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~--------------dqQrLIy~GKi-L~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDP--------------ELIDLIHCGRK-LKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCCh--------------HHeEEEeCCcC-CCCCCcHHHcCCCCCCEEEEEeC
Confidence 557999999999999973 2212 13489999975 57889999999999999999864
No 32
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.81 E-value=1.4e-08 Score=72.17 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=51.0
Q ss_pred EEEEEccCCce---EEEEeCCCCcHHHHHHHHHHHhccc-cccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 67 RISILKLDGTS---FDVAVMNSATVKDLKLAIKKKVNDM-EQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 67 kLtV~k~dg~~---~~V~V~~sATV~DLKkAI~~~~~~~-~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
.|.+.+...+. ++++ +++|||.|||.+|++.++.. +.|+ .+++.+.|..| .|+++|.+|||
T Consensus 2 ~i~~~~~~~k~~~~~~~~-~~~aTV~dlk~~i~~~~~~~~~~Rq-------------rl~~~~~g~~L-~d~~tL~~~gv 66 (77)
T cd01801 2 EILDAKRSDKPIGKLKVS-SGDATIADLKKLIAKSSPQLTVNRQ-------------SLRLEPKGKSL-KDDDTLVDLGV 66 (77)
T ss_pred eeeccccCcCceeecccC-CCCccHHHHHHHHHHHcCCCCccee-------------EEEeCCCCccc-CCcccHhhcCC
Confidence 34554544133 3444 68899999999999987643 4543 12456888655 67789999999
Q ss_pred CCCCEEEEEe
Q 030379 143 RNNSQVQFVP 152 (178)
Q Consensus 143 kdgd~L~F~~ 152 (178)
++|++|+|+.
T Consensus 67 ~~g~~lyvKD 76 (77)
T cd01801 67 GAGATLYVRD 76 (77)
T ss_pred CCCCEEEEee
Confidence 9999999974
No 33
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.72 E-value=3.2e-08 Score=75.89 Aligned_cols=63 Identities=22% Similarity=0.194 Sum_probs=56.1
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
...+++|.+++||.+||..|..+|...|..| .|+|+|+.|.||..+|++|||..|+.|+....
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQ---------------kL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQ---------------NLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccc---------------eeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 3457889999999999999999999887754 68899999999999999999999999988764
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.47 E-value=3.3e-07 Score=82.21 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=63.1
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc-cccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN-DMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~-~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
|+|||+.+.++.|.+.|.++-||.++|+.|+.... .||.. + -.|||+|+ ++.|+.++.+|+|++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~--~------------QkLIy~Gk-iL~D~~tv~Eykv~E 65 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAE--Q------------QKLIYSGK-ILKDETTVGEYKVKE 65 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchh--h------------heeeecce-eccCCcchhhhcccc
Confidence 89999999999999999999999999999998865 24442 1 27999996 558999999999999
Q ss_pred CCEEEEEeee
Q 030379 145 NSQVQFVPFV 154 (178)
Q Consensus 145 gd~L~F~~rl 154 (178)
++.|.++..=
T Consensus 66 ~~fiVvMlsK 75 (340)
T KOG0011|consen 66 KKFIVVMLSK 75 (340)
T ss_pred CceEEEEEec
Confidence 9988776543
No 35
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.47 E-value=3.1e-07 Score=66.81 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=41.7
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC--C-ccc-cCCcchhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--N-QKL-LDENSALQ 138 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~--g-~kL-ldD~~tL~ 138 (178)
.++|-|.|++.+|.. .|+|++++|+.+|+..|++.++.....+ .|..+ + +.+ .+++++|+
T Consensus 2 ~~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~~~---------------~L~~~~~~~~~l~s~~~~tl~ 65 (80)
T PF11543_consen 2 ASSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDSSQ---------------SLSKDRNNKEELKSSDSKTLS 65 (80)
T ss_dssp ----EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TTT------------------BSSGGGGGCSSS-TT-CCC
T ss_pred CccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCcce---------------EEEecCCCCcccccCCcCCHH
Confidence 468999999998875 7889999999999999999986543311 22111 2 233 25789999
Q ss_pred hcCCCCCCEEEEEe
Q 030379 139 DCGVRNNSQVQFVP 152 (178)
Q Consensus 139 dyGIkdgd~L~F~~ 152 (178)
++||+.||.|++.+
T Consensus 66 ~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 66 SLGLKHGDMLYLKP 79 (80)
T ss_dssp CT---TT-EEE---
T ss_pred HcCCCCccEEEEec
Confidence 99999999887654
No 36
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.43 E-value=1.2e-06 Score=63.61 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=53.6
Q ss_pred eEEEEEccC-CceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEE-ecCCc-----cccCCcchhh
Q 030379 66 MRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCL-SHQNQ-----KLLDENSALQ 138 (178)
Q Consensus 66 MkLtV~k~d-g~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L-~~~g~-----kLldD~~tL~ 138 (178)
++|.|.... ....+..++.+.||.+||..++..+...++.+ .| .|.+. .|.+|.++|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~m---------------rL~l~~~~~~~~~~l~~d~~~L~ 66 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSM---------------RLQLFDGDDKLVSKLDDDDALLG 66 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccce---------------EEEEEcCCCCeEeecCCCccEee
Confidence 456664433 22345558999999999999999987665532 34 36655 4778999999
Q ss_pred hcCCCCCCEEEEEe
Q 030379 139 DCGVRNNSQVQFVP 152 (178)
Q Consensus 139 dyGIkdgd~L~F~~ 152 (178)
+||++||..||++.
T Consensus 67 ~y~~~dg~~IhVvD 80 (84)
T cd01789 67 SYPVDDGCRIHVID 80 (84)
T ss_pred eccCCCCCEEEEEe
Confidence 99999999999875
No 37
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.37 E-value=2.7e-06 Score=61.54 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=53.5
Q ss_pred eEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCC---ccccCCcchhh
Q 030379 66 MRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQN---QKLLDENSALQ 138 (178)
Q Consensus 66 MkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g---~kLldD~~tL~ 138 (178)
++|+|.....+ .....++.+.||.+||..|+..+...++.+ .+.|. ..+ ..+.+|.++|.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m-------------~L~l~~~~~~~~~~~~~dd~~~L~ 68 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDM-------------RLQLKSDKDDSKIEELDDDDATLG 68 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTE-------------EEEEE-TSSSSEEEESSGSSSBCC
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccE-------------EEEEEecCCCccccccCCCccEee
Confidence 46777555553 778889999999999999999998665532 12222 111 24568999999
Q ss_pred hcCCCCCCEEEEEe
Q 030379 139 DCGVRNNSQVQFVP 152 (178)
Q Consensus 139 dyGIkdgd~L~F~~ 152 (178)
+||++||++|++..
T Consensus 69 ~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 69 SYGIKDGMRIHVVD 82 (87)
T ss_dssp HHT-STTEEEEEEE
T ss_pred cCCCCCCCEEEEEe
Confidence 99999999999864
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.26 E-value=2.7e-06 Score=66.21 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=63.6
Q ss_pred ceEEEEEccCCceE-EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC--
Q 030379 65 AMRISILKLDGTSF-DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG-- 141 (178)
Q Consensus 65 AMkLtV~k~dg~~~-~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG-- 141 (178)
.+.|..+-.||+-+ +..+++++||++||+.|+...+. .+++++ +-+.+..|||+|+ ++.|+.||.+|+
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~--~ke~~P------~~~~~qKLIysGK-iLeD~~TL~d~~~p 74 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPK--DKEVGP------KTVNEVKLISAGK-ILENSKTVGECRSP 74 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhccc--ccccCC------CCHHHeEEEeCCe-ecCCCCcHHHhCCc
Confidence 46778888899776 67778999999999999988753 111111 2234568999996 557899999999
Q ss_pred ----CCCCCEEEEEeeeecC
Q 030379 142 ----VRNNSQVQFVPFVLSK 157 (178)
Q Consensus 142 ----Ikdgd~L~F~~rl~~~ 157 (178)
+....++|++.|-..-
T Consensus 75 ~g~~~~~~~TmHvvlr~~~~ 94 (113)
T cd01814 75 VGDIAGGVITMHVVVQPPLA 94 (113)
T ss_pred ccccCCCceEEEEEecCCCC
Confidence 7778889988887544
No 39
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=3.3e-07 Score=71.37 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=65.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.+.|.++.|+...|+|.++.||.-||..|+.+-...|+ + ..|+|+|+ .+.|.-||.+|||+--
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~-~--------------~~L~~~~k-~LED~~Tla~Y~i~~~ 64 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPD-Q--------------QRLIFAGK-QLEDGRTLADYNIQKE 64 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHH-H--------------HHHHhccc-ccccCCcccccCccch
Confidence 457788999999999999999999999999999766555 2 16899996 5579999999999999
Q ss_pred CEEEEEeeeec
Q 030379 146 SQVQFVPFVLS 156 (178)
Q Consensus 146 d~L~F~~rl~~ 156 (178)
|++|.+.||+.
T Consensus 65 ~Tl~~~~rL~G 75 (128)
T KOG0003|consen 65 STLHLVLRLRG 75 (128)
T ss_pred hhhhhhHHHhc
Confidence 99999999864
No 40
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=2.4e-06 Score=69.64 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=63.6
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|.|+.+.|..+..+|..+.||..+|..|+..-.-.+. | + .|+|.|+.|. |..+|+||+|.--
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~d-q---q-----------rlifag~qLe-dgrtlSDY~Iqke 64 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPD-Q---Q-----------RLIFAGKQLE-DGRTLSDYNIQKE 64 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCch-h---h-----------hhhhhhcccc-cCCcccccccccc
Confidence 778999999999999999999999999999977432222 1 1 5899999885 5599999999999
Q ss_pred CEEEEEeeeecC
Q 030379 146 SQVQFVPFVLSK 157 (178)
Q Consensus 146 d~L~F~~rl~~~ 157 (178)
++++.+-+++.-
T Consensus 65 stl~l~l~l~Gg 76 (156)
T KOG0004|consen 65 STLHLVLRLRGG 76 (156)
T ss_pred ceEEEEEEecCC
Confidence 999999997554
No 41
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.15 E-value=6.5e-06 Score=58.79 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=51.4
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe-cCCccccCCcchhhhcCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS-HQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~-~~g~kLldD~~tL~dyGIk 143 (178)
-.+|+|.-.+|..+++.+|.+.||++|-..|-+.+........++ . .|.|. ..|. .++++.+|.++||.
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~-~--------~~~L~~~~g~-~L~~~~tL~~~gV~ 71 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGH-G--------QWVLARAGGR-PLDPDQTLADAGVR 71 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT--E---------EEEG-GGTE-EEETTSBCGGGT--
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCc-c--------eEEEEecCCc-ccCCcCcHhHcCCC
Confidence 468999887789999999999999999999999987433221111 1 34777 6675 66899999999999
Q ss_pred CCCEEEE
Q 030379 144 NNSQVQF 150 (178)
Q Consensus 144 dgd~L~F 150 (178)
|||.|+.
T Consensus 72 dGd~L~L 78 (79)
T PF08817_consen 72 DGDVLVL 78 (79)
T ss_dssp TT-EEEE
T ss_pred CCCEEEe
Confidence 9999874
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.06 E-value=3.8e-05 Score=59.13 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=54.0
Q ss_pred ceEEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 65 AMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 65 AMkLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
++.|..+..+|+ .-++..+++.||++||+.|....+..-+. + -.| +..+.|+|.|+ +++|+++|.++++.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~--~--p~s----~~~lRLI~~Gr-iL~d~~tL~~~~~~ 72 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEE--R--PKS----PSDLRLIYAGR-ILEDNKTLSDCRLP 72 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSS--T--T-S----GGGEEEEETTE-EE-SSSBTGGGT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCcccccc--C--CCC----hhhEEEEeCCe-ecCCcCcHHHhCCC
Confidence 577888889999 67888899999999999999988643110 1 112 34689999996 77899999999999
Q ss_pred CCCE
Q 030379 144 NNSQ 147 (178)
Q Consensus 144 dgd~ 147 (178)
-|+.
T Consensus 73 ~~~~ 76 (111)
T PF13881_consen 73 SGET 76 (111)
T ss_dssp TTSE
T ss_pred CCCC
Confidence 8884
No 43
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.99 E-value=4.9e-05 Score=46.56 Aligned_cols=64 Identities=27% Similarity=0.401 Sum_probs=51.8
Q ss_pred cCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEe
Q 030379 73 LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 73 ~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
.+|....+.+++++||.+|+..|...++..+. .+.|.+.+..+ .+...+.++++.+|+.++|..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~---------------~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPE---------------QQRLLVNGKIL-PDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChH---------------HeEEEECCeEC-CCCCcHHHcCCCCCCEEEEEe
Confidence 37888889999999999999999999863333 45788888644 566677899999999999875
No 44
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.4e-05 Score=56.61 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=60.7
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|.|+.+.|+.+++.+.++.+|...|..|+++-.-.|+.| .|+|.|+-+ .|+.+-.+|.+.-|
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qq---------------rli~~gkqm-~DD~tA~~Y~~~~G 64 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---------------RLIYAGKQM-NDDKTAAHYNLLGG 64 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhh---------------hhhhccccc-cccccHHHhhhccc
Confidence 78899999999999999999999999999999976655522 699999766 68889999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
+.||.+
T Consensus 65 SVlHlv 70 (70)
T KOG0005|consen 65 SVLHLV 70 (70)
T ss_pred eeEeeC
Confidence 988863
No 45
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.68 E-value=0.00042 Score=45.26 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=58.0
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCE
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 147 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~ 147 (178)
+.+....|+.+.+.|....+|..+|..|......... ..++.+.|+.| .|..+|.+|+|..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~---------------~q~~~~~~~~l-~d~~~l~~~~i~~~~~ 65 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVD---------------QQRLIFGGKPL-EDGRTLADYNIQEGST 65 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCe---------------eEEEEECCEEC-cCCCcHHHhCCCCCCE
Confidence 4566689999999999999999999999988532222 22688988655 5679999999999999
Q ss_pred EEEEeeee
Q 030379 148 VQFVPFVL 155 (178)
Q Consensus 148 L~F~~rl~ 155 (178)
+++..++.
T Consensus 66 ~~l~~~~~ 73 (75)
T KOG0001|consen 66 LHLVLSLR 73 (75)
T ss_pred EEEEEecC
Confidence 99888764
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.30 E-value=0.0013 Score=51.70 Aligned_cols=62 Identities=26% Similarity=0.376 Sum_probs=47.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
|=+.| ++..+.+=+...++.||.|||+.|+......|..| .|+-+++ +++|++||.|||+.+
T Consensus 3 vFlmI-rR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQ---------------rL~kd~q-vLeD~kTL~d~g~t~ 64 (119)
T cd01788 3 VFLMI-RRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQ---------------RLYKDDQ-LLDDGKTLGDCGFTS 64 (119)
T ss_pred eEEEE-EecceEEEeecCCcccHHHHHHHHHHHhcCChhHh---------------eeecCce-eecccccHHHcCccc
Confidence 45666 55567777778899999999999999997766633 3555555 779999999999943
No 47
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00064 Score=68.77 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=60.7
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCC
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNS 146 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd 146 (178)
.|+|+++|...-+|.|....||.+||..|.+..+-..+ .+ .|||.|. ++.|+++++.||| ||-
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~----~q-----------r~i~~gr-vl~~~k~vq~~~v-dgk 66 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSE----KQ-----------RLIYQGR-VLQDDKKVQEYNV-DGK 66 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccc----cc-----------eeeecce-eeccchhhhhccC-CCe
Confidence 38999999999999999999999999999999864322 22 6999995 6689999999999 999
Q ss_pred EEEEEee
Q 030379 147 QVQFVPF 153 (178)
Q Consensus 147 ~L~F~~r 153 (178)
.||++-|
T Consensus 67 ~~hlver 73 (1143)
T KOG4248|consen 67 VIHLVER 73 (1143)
T ss_pred EEEeecc
Confidence 9999987
No 48
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.98 E-value=0.002 Score=56.82 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=52.6
Q ss_pred eEEEEEccCCce-EE-EEeCCCCcHHHHHHHHHHHhc-cccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 66 MRISILKLDGTS-FD-VAVMNSATVKDLKLAIKKKVN-DMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 66 MkLtV~k~dg~~-~~-V~V~~sATV~DLKkAI~~~~~-~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
|.|++.++.+.. .. ...+.++|++||+++|.+... ..+.|+ .. ++.+...|+.| -|+.+|++||.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~-r~----------tlr~e~kgkpl-~~~s~l~e~~~ 68 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRI-RL----------TLRVEPKGKPL-IDNSKLQEYGD 68 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccch-hh----------eeeccCCCccc-cchhHHHHhcc
Confidence 778888777633 34 334667999999998887643 345432 11 45566668766 56778999999
Q ss_pred CCCCEEEEEe
Q 030379 143 RNNSQVQFVP 152 (178)
Q Consensus 143 kdgd~L~F~~ 152 (178)
.+|+++.++.
T Consensus 69 ~s~~~i~vKD 78 (297)
T KOG1639|consen 69 GSGATIYVKD 78 (297)
T ss_pred CCCCEEEEec
Confidence 9999887764
No 49
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.73 E-value=0.015 Score=42.01 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=54.0
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCccccCCcchhhhcCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLLDENSALQDCGV 142 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLldD~~tL~dyGI 142 (178)
..+|.|+--||+.+......+.||.||...|....+... + ..|.|+ |-.+.|.+++.||.|.|+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~----~----------~~f~L~t~fP~k~l~~~~~Tl~eagL 69 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFA----A----------RPFTLMTAFPVKELSDESLTLKEANL 69 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCC----C----------CCEEEecCCCCcccCCCCCcHHHCCC
Confidence 468999999999998889999999999999997653211 1 145664 557778888999999999
Q ss_pred CCCC
Q 030379 143 RNNS 146 (178)
Q Consensus 143 kdgd 146 (178)
.+..
T Consensus 70 ~~s~ 73 (79)
T cd01770 70 LNAV 73 (79)
T ss_pred cCcE
Confidence 9754
No 50
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.38 E-value=0.0091 Score=45.03 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=40.8
Q ss_pred EEEEccCCce-EEEEeC--CCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 68 ISILKLDGTS-FDVAVM--NSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 68 LtV~k~dg~~-~~V~V~--~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
|+|+..++-. +++.|+ ++.||.+||..|....+..+++ +.++|+|+|. ++.|...|..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~-------------~rLRlI~~Gr-~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSR-------------RRLRLIYAGR-LLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCcc-------------ccEEeeecCc-ccCccchhhhh
Confidence 5565555322 455555 8899999999999998433332 2569999996 66777777654
No 51
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.34 E-value=0.043 Score=38.62 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=57.3
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCccccCCc-chhhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLLDEN-SALQD 139 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLldD~-~tL~d 139 (178)
....+|.|+--||+.+.-....++||.+|-.-|.........+ .|.|+ |-...+.+++ .+|.+
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~--------------~f~L~~~~Pr~~l~~~~~~tl~e 69 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEES--------------DFELITAFPRRELTDEDSKTLEE 69 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTS--------------SEEEEESSSTEECCSTTTSBTCC
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCc--------------cEEEEeCCCCcCCCccccccHHH
Confidence 4578999999999999888899999999999998886432210 24554 3445555555 89999
Q ss_pred cCCCCCCEEEEE
Q 030379 140 CGVRNNSQVQFV 151 (178)
Q Consensus 140 yGIkdgd~L~F~ 151 (178)
.|+..+..|++.
T Consensus 70 ~~l~p~~~l~v~ 81 (82)
T PF00789_consen 70 AGLLPSATLIVE 81 (82)
T ss_dssp CTTSSCEEEEEE
T ss_pred hcCCCCeEEEEE
Confidence 999999988764
No 52
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.32 E-value=0.024 Score=41.73 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=53.0
Q ss_pred CceEEEEEc--cCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 64 SAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 64 ~AMkLtV~k--~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.-|+|||-. -+|..|++.+|.--+|..|=..+-+.......+..|. ++.....++ |+.++..|.|||
T Consensus 3 m~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~----------~Ikv~nKa~-llsgd~kL~d~~ 71 (81)
T COG5417 3 MHIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGT----------QIKVMNKAQ-LLSGDDKLIDYQ 71 (81)
T ss_pred ceEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCC----------EEEEeccce-EecCCceEEecc
Confidence 346677643 4688999999998898887776666654332222343 345666674 678889999999
Q ss_pred CCCCCEEE
Q 030379 142 VRNNSQVQ 149 (178)
Q Consensus 142 Ikdgd~L~ 149 (178)
|.|||.|.
T Consensus 72 IadGD~Le 79 (81)
T COG5417 72 IADGDILE 79 (81)
T ss_pred ccCCCEEE
Confidence 99999874
No 53
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=95.66 E-value=0.062 Score=39.58 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=53.4
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC---C-ccccCCcchhhhcC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---N-QKLLDENSALQDCG 141 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~---g-~kLldD~~tL~dyG 141 (178)
+.|+|....+..+.+.|.+..+|..||..|.+..... |.++ |.|. | ..|+.+..+|.+||
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-----g~qr-----------LsfQepgg~rqlL~s~~sLA~yG 64 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-----GLQR-----------LSFQEPGGERQLLSSRKSLADYG 64 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-----cceE-----------EEeecCCcccccccccccHhhhc
Confidence 4789999999999999999999999999999987642 2233 3333 2 34778999999999
Q ss_pred CCCCCEEEE
Q 030379 142 VRNNSQVQF 150 (178)
Q Consensus 142 Ikdgd~L~F 150 (178)
|=.+-.+.+
T Consensus 65 iFs~~~i~l 73 (80)
T cd01811 65 IFSKTNICL 73 (80)
T ss_pred ceeccEEEE
Confidence 976655443
No 54
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.34 E-value=0.13 Score=35.64 Aligned_cols=70 Identities=24% Similarity=0.231 Sum_probs=50.6
Q ss_pred EEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec--C--C-ccccCCcchhhhcCCCC
Q 030379 70 ILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH--Q--N-QKLLDENSALQDCGVRN 144 (178)
Q Consensus 70 V~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~--~--g-~kLldD~~tL~dyGIkd 144 (178)
|.-+||+...++|+.++|+.||=..|..+....+. + -|.|.+ . | ..-++.+++|.+++.++
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~-~-------------~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~ 66 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEK-E-------------YFGLQYQVDKDGEHHWLDLDKKLKKQLKKN 66 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSG-G-------------GEEEEE-EBTTSSEEEE-SSSBGGGSTBTS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCc-c-------------EEEEEEeecCCCcceeccCcccHHHHcCCC
Confidence 56789999999999999999999999999875422 1 356766 1 1 23467888999998884
Q ss_pred CCE--EEEEee
Q 030379 145 NSQ--VQFVPF 153 (178)
Q Consensus 145 gd~--L~F~~r 153 (178)
+.. ++|..+
T Consensus 67 ~~~~~l~frvk 77 (80)
T PF09379_consen 67 NPPFTLYFRVK 77 (80)
T ss_dssp SSSEEEEEEES
T ss_pred CCCEEEEEEEE
Confidence 443 555443
No 55
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.21 Score=38.30 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=61.1
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
..-++|.|...+++.+-+-|..+++..-|.+|..+.. |. -|+.|...|+|+++ .++.|=.+++.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~--------Gl-------~~~s~RFlFdG~rI-~~~~TP~~L~m 81 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQ--------GL-------SMNSLRFLFDGQRI-RETHTPADLEM 81 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHc--------CC-------ccceEEEEECCcCc-CCCCChhhhCC
Confidence 5568899988888888888999999999988876653 32 25788999999988 67889999999
Q ss_pred CCCCEEEEEe
Q 030379 143 RNNSQVQFVP 152 (178)
Q Consensus 143 kdgd~L~F~~ 152 (178)
.+||++-+..
T Consensus 82 Ed~D~Iev~~ 91 (99)
T KOG1769|consen 82 EDGDEIEVVQ 91 (99)
T ss_pred cCCcEEEEEe
Confidence 9999988764
No 56
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=94.95 E-value=0.099 Score=36.25 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=41.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|.| +|+. +.+..++|+.+||+.+..... .++++|=...+ |+-+++|
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~D---------------------I~I~NGF~~~~------d~~L~e~ 48 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDAD---------------------IVILNGFPTKE------DIELKEG 48 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCCC---------------------EEEEcCcccCC------ccccCCC
Confidence 67777 7887 445778899999988765321 56788854432 4568999
Q ss_pred CEEEEEee
Q 030379 146 SQVQFVPF 153 (178)
Q Consensus 146 d~L~F~~r 153 (178)
|.|.|++|
T Consensus 49 D~v~~Ikk 56 (57)
T PF14453_consen 49 DEVFLIKK 56 (57)
T ss_pred CEEEEEeC
Confidence 99999986
No 57
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.072 Score=50.30 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=57.8
Q ss_pred eEEEEEccCCceEEEE-eCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVA-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~-V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
.+|.| +-.|+.++|+ +..++|+.+||..+.....-.|+|| .+...|. +..|+-.+...+|++
T Consensus 4 ~~v~V-KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQ---------------Kv~vKGg-~a~dd~~~~al~iKp 66 (473)
T KOG1872|consen 4 DTVIV-KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQ---------------KVMVKGG-LAKDDVDWGALQIKP 66 (473)
T ss_pred ceEee-eecCccccceeccCCCchHHHHHHHHHhcCCCccce---------------eEEEecc-cccccccccccccCC
Confidence 45666 7789999999 8999999999999999998888876 4778884 667777888999999
Q ss_pred CCEEEEE
Q 030379 145 NSQVQFV 151 (178)
Q Consensus 145 gd~L~F~ 151 (178)
|.+|+..
T Consensus 67 n~~lmMm 73 (473)
T KOG1872|consen 67 NETLMMM 73 (473)
T ss_pred CCEEEee
Confidence 9988754
No 58
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.40 E-value=0.18 Score=35.64 Aligned_cols=62 Identities=11% Similarity=0.292 Sum_probs=39.2
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
....++++..+||.+|.+.+...++.... |...+.+.-+....+ .++=+++||+|.|.+-+.
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~-------------~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Ppvs 80 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEE-------------VRSCCVLALNEEYTT-----ESAALKDGDELAIIPPIS 80 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHH-------------HhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCC
Confidence 44677888899999999999877643211 111122333333332 344589999999987653
No 59
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.33 E-value=0.52 Score=33.03 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=49.1
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCccccC--Ccchhhhc
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLLD--ENSALQDC 140 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLld--D~~tL~dy 140 (178)
..+|.|+--||+.+....+.++||.||...|...... +..|.|+ |-.+.+.+ .+.+|.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~----------------~~~f~L~t~~Pr~~~~~~~~~~TL~e~ 65 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP----------------AEPFTLMTSFPRRVLTDLDYELTLQEA 65 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC----------------CCCEEEEeCCCCccCCCCCccCcHHHc
Confidence 3578999999999988889999999999999876421 1133444 33444544 68999999
Q ss_pred CCCCCC
Q 030379 141 GVRNNS 146 (178)
Q Consensus 141 GIkdgd 146 (178)
|+.++.
T Consensus 66 gL~~s~ 71 (77)
T cd01767 66 GLVNEV 71 (77)
T ss_pred CCccce
Confidence 999543
No 60
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.07 E-value=0.64 Score=32.85 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=51.9
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCccccCC--cchhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLLDE--NSALQ 138 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLldD--~~tL~ 138 (178)
|...+|.|+--||+.+....+.+.||.||...|..... .. + ..|.|+ |-.+.+.++ +.+|.
T Consensus 2 ~~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~-~~----~----------~~f~L~t~~Prk~l~~~d~~~tL~ 66 (80)
T smart00166 2 SDQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT-DG----N----------DPFTLNSPFPRRTFTKDDYSKTLL 66 (80)
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc-CC----C----------CCEEEEeCCCCcCCccccccCCHH
Confidence 45689999999999999999999999999999943321 10 1 124443 434444433 58999
Q ss_pred hcCCCCCCEEEE
Q 030379 139 DCGVRNNSQVQF 150 (178)
Q Consensus 139 dyGIkdgd~L~F 150 (178)
+.|+-.+..|.+
T Consensus 67 e~gL~p~~~l~v 78 (80)
T smart00166 67 ELALLPSSTLVL 78 (80)
T ss_pred HCCCCCceEEEE
Confidence 999988887654
No 61
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.93 E-value=0.13 Score=36.98 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=45.0
Q ss_pred eCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc-CCCCCCEEEEEee
Q 030379 82 VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC-GVRNNSQVQFVPF 153 (178)
Q Consensus 82 V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy-GIkdgd~L~F~~r 153 (178)
|.++.||.|+++.+......... .||.|.++|+.| +|...|.++ |+++|..|..+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~--------------Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYL--------------TNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccce--------------eEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEEec
Confidence 45678999999999887532211 389999999987 788899888 8999998888744
No 62
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.83 E-value=0.36 Score=34.01 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=41.1
Q ss_pred ccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEE
Q 030379 72 KLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQ 149 (178)
Q Consensus 72 k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~ 149 (178)
.-++..+.|.|.++.|+.|+=+..-++|...++ .|.|.|.++ .+|-+-.++-.|+-||..|.
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~---------------~~~L~h~~k-~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS---------------SYDLKHNNK-PLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GG---------------G-EEEETTE-EESSS-BHHHH---SS-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc---------------ceEEEECCE-EeccccceeecCCCCCCEEe
Confidence 567889999999999999998888888876544 348999995 55888999999999999874
No 63
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.049 Score=39.23 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=46.0
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCE
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 147 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~ 147 (178)
+.+.-+=|+...|.-.++.||.|||+.|+....-.+++- .|- ..--+.+|.-+|++|-|.+|..
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~ki---------------vl~-k~~~i~kd~I~L~dyeihdg~~ 67 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKI---------------VLK-KWYTIFKDHITLSDYEIHDGMN 67 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHh---------------HHH-hhhhhhhcccceeeEEeccCcc
Confidence 344444577777777889999999999999886544421 111 1113567888999999999876
Q ss_pred EE
Q 030379 148 VQ 149 (178)
Q Consensus 148 L~ 149 (178)
+-
T Consensus 68 le 69 (73)
T KOG3493|consen 68 LE 69 (73)
T ss_pred EE
Confidence 53
No 64
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=93.41 E-value=0.16 Score=39.22 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=43.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
|=+.| ++..+.+-+.-.++.||.|||..++......+. +++ +|+. +..-|++|.++|.|+|...
T Consensus 3 ~f~~V-rR~kttif~da~es~tV~elK~~l~gi~~~Pvn----~qr---------L~km-d~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 3 VFLRV-RRHKTTIFTDAKESSTVFELKRKLEGILKRPVN----EQR---------LYKM-DTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeeee-eecceeEEeecCccccHHHHHHHHHHHHhCCCc----chh---------eeec-CHHHHhhccchhhhccccc
Confidence 44566 455666777778899999999999988754322 111 1222 2335889999999998754
No 65
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=93.39 E-value=0.52 Score=38.91 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=52.9
Q ss_pred eEEEEEccCC----ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec-CCccc-cCCcchhhh
Q 030379 66 MRISILKLDG----TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH-QNQKL-LDENSALQD 139 (178)
Q Consensus 66 MkLtV~k~dg----~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~-~g~kL-ldD~~tL~d 139 (178)
|.|.|...+| ..+.+.+|.++||.||+..|....+..... ++.|.. .+..| ..++..+.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~--------------~~~L~~~~n~~l~~~~~~~~s~ 66 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSS--------------QLYLTTNSNGQLSPSSDIPLSS 66 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccc--------------eeEEEEeCCCeeCCCccccHHh
Confidence 6789999999 578999999999999999999987644331 123444 34445 356666777
Q ss_pred cCCCCCC----EEEEEeeee
Q 030379 140 CGVRNNS----QVQFVPFVL 155 (178)
Q Consensus 140 yGIkdgd----~L~F~~rl~ 155 (178)
+.-.+.+ .|++..+|.
T Consensus 67 l~~~~~~~~~~~l~l~~rl~ 86 (162)
T PF13019_consen 67 LLSSSQDSDFITLRLSLRLR 86 (162)
T ss_pred hccCcCCCCceEEEEEEecc
Confidence 7655554 366666663
No 66
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.17 E-value=0.88 Score=32.45 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=51.9
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccC--CcchhhhcC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLD--ENSALQDCG 141 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLld--D~~tL~dyG 141 (178)
...+|.|+--||+.+....+.++|+.||...|...... +.. | .+...|-.+.+.+ .+.+|.+.|
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~------~~~-----f---~L~t~fPrk~~~~~d~~~TL~elg 68 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN------GGP-----F---TLMTPFPRKVFTEDDMEKPLQELG 68 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC------CCC-----E---EEEeCCCCeECCcccccCCHHHCC
Confidence 34689999999999988889999999999999865421 000 0 2233344544543 368999999
Q ss_pred CCCCCEEEE
Q 030379 142 VRNNSQVQF 150 (178)
Q Consensus 142 Ikdgd~L~F 150 (178)
+.+...|..
T Consensus 69 L~Psa~L~v 77 (79)
T cd01772 69 LVPSAVLIV 77 (79)
T ss_pred CCCceEEEE
Confidence 999887654
No 67
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.15 E-value=1 Score=32.89 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=50.5
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC--Ccccc-------CCc
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQKLL-------DEN 134 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~--g~kLl-------dD~ 134 (178)
.+.+|.|+--||+.+.-....+.||.+|-..|... ...+ ..|.|+.+ .+.+. +.+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~---------------~~f~L~t~FPrr~~~~~~~~~~~~~ 66 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETP---------------EKFQIVTNFPRRVLPCLPSEGDPPP 66 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCC---------------CcEEEecCCCCccccccccccCcCC
Confidence 47899999999999888888899999999999532 1111 24566554 23332 356
Q ss_pred chhhhcCCCCCCEEE
Q 030379 135 SALQDCGVRNNSQVQ 149 (178)
Q Consensus 135 ~tL~dyGIkdgd~L~ 149 (178)
.||.+.|+.+...|.
T Consensus 67 ~TL~eaGL~~s~~L~ 81 (85)
T cd01774 67 PTLLEAGLSNSEVLF 81 (85)
T ss_pred CCHHHcCCCCccEEE
Confidence 799999999776443
No 68
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.27 E-value=0.56 Score=33.02 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=40.9
Q ss_pred eEEEEeCCC-CcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 77 SFDVAVMNS-ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 77 ~~~V~V~~s-ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
...++++.+ +||.||...+...++.... +...+.+.-+....++ +.=|++||+|.|.+-+.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~-------------~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAA-------------SRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhh-------------hccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 356778877 8999999999988752111 1122444444344443 46799999999998764
No 69
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=92.22 E-value=0.8 Score=42.78 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=58.8
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
-+|||. .+.+..|+.+|.+..|.||=-.|-+...........+ - .+.|.--|...++.+.+|.+.||.||
T Consensus 3 ~RVtV~-~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~--~-------~w~L~r~gG~pL~~~~sL~~~gV~DG 72 (452)
T TIGR02958 3 CRVTVL-AGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGA--V-------RWALARAGGSPLDPDASLAEAGVRDG 72 (452)
T ss_pred EEEEEe-eCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCC--c-------ceEEecCCCCCCCCCCCHHHcCCCCC
Confidence 478885 4456699999999999999999999886321101111 1 23666665556688999999999999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|++.++-
T Consensus 73 ~~L~L~p~~ 81 (452)
T TIGR02958 73 ELLVLVPAS 81 (452)
T ss_pred CeEEEeeCC
Confidence 999998854
No 70
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=92.10 E-value=1.8 Score=34.16 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=57.4
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCc-----cccCCcchhh
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQ-----KLLDENSALQ 138 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~-----kLldD~~tL~ 138 (178)
+.+.|.|...||+...|.|..++||.|+-..|.+..... + +.-|.|.+... .-++...+|.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~-------------~~~F~L~~~~~~~~~~~~l~~~~~l~ 67 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-E-------------SEYFGLQFEDPDEDLSHWLDPAKTLL 67 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-c-------------cceeEEEEEcCCCCcCeeCCCccCHH
Confidence 467899999999999999999999999999999998652 2 12456655421 1234567777
Q ss_pred hcCCC-CCCEEEEEeeee
Q 030379 139 DCGVR-NNSQVQFVPFVL 155 (178)
Q Consensus 139 dyGIk-dgd~L~F~~rl~ 155 (178)
+...+ ....++|..|.-
T Consensus 68 ~~~~~~~~~~l~fr~r~~ 85 (207)
T smart00295 68 DQDVKSEPLTLYFRVKFY 85 (207)
T ss_pred HhcCCCCCcEEEEEEEEc
Confidence 77766 455788887764
No 71
>PLN02560 enoyl-CoA reductase
Probab=91.62 E-value=0.18 Score=45.00 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=47.9
Q ss_pred cCCCCCCCHHHHHHHHhhhcCC----ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccc
Q 030379 43 ADVPKKPTLSDVDTLISLEMGS----AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHV 117 (178)
Q Consensus 43 ~dlp~~~t~~ev~~~Iale~G~----AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~V 117 (178)
-|+|++.|++||..+|+-..|. ..+|++...+|+.-++.+.++.|+.|+- +......+-. +.|+ +||||-|
T Consensus 18 lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~g--v~~gstLy~k-DLGp-Qi~wrtV 92 (308)
T PLN02560 18 LEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYG--LGDGGTVVFK-DLGP-QVSYRTL 92 (308)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcC--CCCCceEEEE-eCCC-cCchhhh
Confidence 3689999999999999988774 3667765445655456677788888762 2222222222 4676 5999864
No 72
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.58 E-value=0.67 Score=31.96 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=40.5
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
...++++.+.||.||.+.+...++.... -+..++.++-+..... .++=|++||+|.|.+-+.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~------------~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLE------------ELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHH------------hhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCC
Confidence 3567778889999999999988753200 0112244444333433 345699999999988664
No 73
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=91.39 E-value=1.2 Score=31.61 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=40.3
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEe
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
....|+++ .+||.||.+++...++....+ +.|. ++.++.+.-+++ ..+.+.. .-|++||+|.|.+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~-------~~~~~~v~vN~~-~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLG-------LVPNVIILVNGR-NVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCc-------ccccEEEEECCE-ecCccCC---CCCCCCCEEEEeC
Confidence 34567776 899999999999887632110 0111 122223333443 3332211 5699999999998
Q ss_pred eee
Q 030379 153 FVL 155 (178)
Q Consensus 153 rl~ 155 (178)
-+.
T Consensus 84 pvs 86 (88)
T TIGR01687 84 PVS 86 (88)
T ss_pred CCc
Confidence 764
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=90.63 E-value=1.2 Score=28.82 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=45.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEc-cCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILK-LDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k-~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+.+||+++|-+||.....- +|....+.+.. .++..-....-.=.+..+.++|++..-.
T Consensus 3 v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 5789999999999999988 99998888877 4566544444445689999999987643
No 75
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=89.32 E-value=0.95 Score=30.87 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=42.7
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
...+.++..+||.||.+++...++... +...|.+.-+..+.++ .-.+.-+++||+|.|.+-+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~--------------~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppv 74 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELA--------------LRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPV 74 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGH--------------TTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEEST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccc--------------cCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCC
Confidence 456778899999999999988875321 1122444444345444 3556778999999998755
No 76
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=87.44 E-value=3 Score=28.32 Aligned_cols=62 Identities=8% Similarity=0.172 Sum_probs=41.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| ||+.+.+ +.+||.+|-..+. ..+. .+.+..+++.+ ......+.-+++|
T Consensus 1 m~i~~---Ng~~~~~---~~~tl~~Ll~~l~----~~~~---------------~vavavN~~iv--~~~~~~~~~L~dg 53 (65)
T PRK06488 1 MKLFV---NGETLQT---EATTLALLLAELD----YEGN---------------WLATAVNGELV--HKEARAQFVLHEG 53 (65)
T ss_pred CEEEE---CCeEEEc---CcCcHHHHHHHcC----CCCC---------------eEEEEECCEEc--CHHHcCccccCCC
Confidence 67777 8998777 3579999987652 1111 12355556543 2455567789999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|-|++-+
T Consensus 54 D~Ieiv~~V 62 (65)
T PRK06488 54 DRIEILSPM 62 (65)
T ss_pred CEEEEEEec
Confidence 999988765
No 77
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=87.41 E-value=1.4 Score=34.96 Aligned_cols=61 Identities=25% Similarity=0.444 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHhcc----ccccccCccccccccccceeEEecC--------------C-c-ccc---CCcchhhhcC
Q 030379 85 SATVKDLKLAIKKKVND----MEQSNLGHRHISWKHVWANYCLSHQ--------------N-Q-KLL---DENSALQDCG 141 (178)
Q Consensus 85 sATV~DLKkAI~~~~~~----~~~r~~g~~~ISW~~VW~~~~L~~~--------------g-~-kLl---dD~~tL~dyG 141 (178)
+.||.||++.+.+..+. .|.|. +--.++.+... + . -++ +++.+|.++|
T Consensus 26 ~~Tv~~l~~~v~~~I~t~~~~~Pfrn---------~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~g 96 (122)
T PF10209_consen 26 DTTVKDLKEQVKQDIKTRPGLPPFRN---------VKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELG 96 (122)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCCcee---------eecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcC
Confidence 78999999999988752 23321 11223333332 1 1 133 7889999999
Q ss_pred CCCCCEEEEEeee
Q 030379 142 VRNNSQVQFVPFV 154 (178)
Q Consensus 142 Ikdgd~L~F~~rl 154 (178)
|.|..+|.|-.+-
T Consensus 97 v~nETEiSfF~~~ 109 (122)
T PF10209_consen 97 VENETEISFFNME 109 (122)
T ss_pred CCccceeeeeCHH
Confidence 9999999987654
No 78
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=1.6 Score=40.25 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=39.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEE
Q 030379 78 FDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQ 149 (178)
Q Consensus 78 ~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~ 149 (178)
|+|.|..+..|.+||+.+++.....+. ++.++|.|++|. ++.+++.+.+.--+.+|
T Consensus 16 l~v~v~~~t~I~~lke~Vak~~gvp~D---------------~L~viFaGKeLs-~~ttv~~cDL~qqs~~h 71 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAKRQGVPAD---------------QLRVIFAGKELS-NDTTVQNCDLSQQSATH 71 (446)
T ss_pred eeEEEecCCCHHHHHHHHHHhhCCChh---------------heEEEEeccccc-cCceeecccccccchhh
Confidence 899999999999999999988754433 457888887774 55566644444333333
No 79
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=85.06 E-value=3.2 Score=28.43 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=40.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| ||+.+++ +.+.||.||-..+.- .+. .+.+..+++.+ ..+.-.++-+++|
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l~~----~~~---------------~vaVavN~~iv--~r~~w~~~~L~~g 54 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQLNQ----LQP---------------GAALAINQQII--PREQWAQHIVQDG 54 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHcCC----CCC---------------cEEEEECCEEe--ChHHcCccccCCC
Confidence 77888 8998666 678899999865321 111 13455666544 2334455569999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|-+++-+
T Consensus 55 D~Ieii~~v 63 (66)
T PRK08053 55 DQILLFQVI 63 (66)
T ss_pred CEEEEEEEc
Confidence 998887654
No 80
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.04 E-value=6.5 Score=27.29 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=39.9
Q ss_pred eEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
|+|.+ +|. ...++++.++||.||-+.+. ..+. ...+..+|+.+ . .++-++
T Consensus 5 m~v~v---ng~~~~~~~~~~~~~tv~~ll~~l~----~~~~---------------~v~v~vNg~iv-~-----~~~~l~ 56 (70)
T PRK08364 5 IRVKV---IGRGIEKEIEWRKGMKVADILRAVG----FNTE---------------SAIAKVNGKVA-L-----EDDPVK 56 (70)
T ss_pred EEEEE---eccccceEEEcCCCCcHHHHHHHcC----CCCc---------------cEEEEECCEEC-C-----CCcCcC
Confidence 56666 555 66788899999999987662 1111 12344455433 2 256699
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+||.|-|.+-+
T Consensus 57 ~gD~Veii~~V 67 (70)
T PRK08364 57 DGDYVEVIPVV 67 (70)
T ss_pred CCCEEEEEccc
Confidence 99999998765
No 81
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=4.1 Score=31.21 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=53.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
+.|.|.-.||+.+=+.|..+.|..-|-.|+.+...... ..|...|+|+.+ +-+.|=.|++..+|
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m---------------~slRfL~dG~rI-~~dqTP~dldmEdn 88 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNM---------------SSLRFLFDGKRI-DLDQTPGDLDMEDN 88 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCc---------------ceeEEEEcceec-CCCCChhhcCCccc
Confidence 66888888999988888889999988888877653211 145778999877 56788999999999
Q ss_pred CEE
Q 030379 146 SQV 148 (178)
Q Consensus 146 d~L 148 (178)
|++
T Consensus 89 d~i 91 (103)
T COG5227 89 DEI 91 (103)
T ss_pred hHH
Confidence 975
No 82
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=82.31 E-value=2.2 Score=30.47 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEE
Q 030379 86 ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 151 (178)
Q Consensus 86 ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~ 151 (178)
.|+.||.+...++|...+. ..++-+|-.+.| = . =|+|||.|+|+
T Consensus 26 ~SleeLl~ia~~kfg~~~~----------------~v~~~dgaeIdD-I-~----~IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSAT----------------KVLNEDGAEIDD-I-D----VIRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhCCCce----------------EEEcCCCCEEeE-E-E----EEEcCCEEEEC
Confidence 4999999999999975422 134444544421 1 1 38999999874
No 83
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=80.33 E-value=21 Score=26.26 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC--Cccc--cCCcchhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQKL--LDENSALQ 138 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~--g~kL--ldD~~tL~ 138 (178)
|..-+|.|+.-+|+.+.-....+.|+.+|-..|... ...+. .|.|+-+ -+.+ .+.+.+|+
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~~~---------------~f~L~t~FPRr~~~~~d~~~TL~ 66 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYPNE---------------RFELLTNFPRRKLSHLDYDITLQ 66 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCC---------------CEEEecCCCCcccCCcccCCCHH
Confidence 556799999999999988888899999999988873 21111 2333322 2222 23468999
Q ss_pred hcCCCCCCEEEEEe
Q 030379 139 DCGVRNNSQVQFVP 152 (178)
Q Consensus 139 dyGIkdgd~L~F~~ 152 (178)
+.|+.+..+|.+-.
T Consensus 67 e~GL~P~~~LfVq~ 80 (82)
T cd01773 67 EAGLCPQETVFVQE 80 (82)
T ss_pred HcCCCCCcEEEEec
Confidence 99999998776543
No 84
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=80.21 E-value=5.1 Score=32.70 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=31.4
Q ss_pred cccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeeecC
Q 030379 116 HVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVLSK 157 (178)
Q Consensus 116 ~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~~~ 157 (178)
|+-+..-.+..|.|..+|+++|+..+++-||.|-..+..-..
T Consensus 99 y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~ 140 (151)
T KOG3391|consen 99 YIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPNR 140 (151)
T ss_pred ceeeeecccccCcccCCccchhhhCCccccceEEEEecCccc
Confidence 333433334447889999999999999999999888776443
No 85
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=80.20 E-value=6.3 Score=38.13 Aligned_cols=92 Identities=16% Similarity=0.294 Sum_probs=49.0
Q ss_pred CceEEEEEccCC--ceEEEEeCCCCcHHHHHHHHHHHh-ccccccc---cCccccccccccc-eeEEecCC--ccccCC-
Q 030379 64 SAMRISILKLDG--TSFDVAVMNSATVKDLKLAIKKKV-NDMEQSN---LGHRHISWKHVWA-NYCLSHQN--QKLLDE- 133 (178)
Q Consensus 64 ~AMkLtV~k~dg--~~~~V~V~~sATV~DLKkAI~~~~-~~~~~r~---~g~~~ISW~~VW~-~~~L~~~g--~kLldD- 133 (178)
..|+|.|.-.++ ..++|.|-+-.||.+.|+.|-.++ ...|.++ ...--+-|++==. ...|.-.+ .+..++
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 458888665433 558999998899999999888775 2222221 0111122433111 11111111 011111
Q ss_pred --cchhhhcCCCCCCEEEEEeeee
Q 030379 134 --NSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 134 --~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
-.||..|||.||++|.++++..
T Consensus 268 krLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 268 KRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EE--BHHHHT--TTEEEEEEES--
T ss_pred eEeccHhhcCCCCCceEEEeeccc
Confidence 1589999999999999999874
No 86
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=79.61 E-value=7.6 Score=29.07 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=41.1
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
..........||..+.+.+.+.|.- +. + . .+|..|--- .-+.|.+...||.|.||.+|-.|.+-.|-
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~-E--~------RLW~~~~~~-~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QE-E--T------RLWNKYSEN-SYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS----E------EEEEECTTT-CEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-Cc-c--c------eehhccCCc-chhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 4566668889999999999999976 22 1 1 255544111 12345567789999999999988876654
No 87
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=79.20 E-value=4.7 Score=37.43 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=52.7
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC--CccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~--g~kLldD~~tL~dyGIk 143 (178)
..|.|+-.||+-+-.....+-||.|++..|...-+-+..+ .|.|... .+.|.||+.||++.|+.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~--------------~F~L~~~FPpk~l~D~sqTle~AgL~ 371 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSST--------------YFILMMAFPPKPLSDDSQTLEEAGLL 371 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCC--------------ceeeeecCCCcccCCcchhHHhccch
Confidence 5788989999998777788899999999999886543331 3444444 77889999999999999
Q ss_pred CCC
Q 030379 144 NNS 146 (178)
Q Consensus 144 dgd 146 (178)
|..
T Consensus 372 Nsv 374 (380)
T KOG2086|consen 372 NSV 374 (380)
T ss_pred hhh
Confidence 854
No 88
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=77.93 E-value=10 Score=26.75 Aligned_cols=54 Identities=26% Similarity=0.302 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHHhccccc-cccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 85 SATVKDLKLAIKKKVNDMEQ-SNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 85 sATV~DLKkAI~~~~~~~~~-r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
.+||.||+.++...++.... -..+ + +.++-+..+..+ +.=|++||+|.|.+-+.
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~-----------~-~~~aVN~~~~~~-----~~~l~dgDeVai~PPVs 79 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDG-----------K-LLAAVNQTLVSF-----DHPLTDGDEVAFFPPVT 79 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCC-----------C-EEEEECCEEcCC-----CCCCCCCCEEEEeCCCC
Confidence 58999999999988753211 0011 1 122333334322 33499999999998664
No 89
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=77.39 E-value=9.9 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=24.6
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
+|.+.- +|....+.|+.+.|..||...|...++.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~ 36 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGL 36 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 444432 5667777788888888888888888864
No 90
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=77.02 E-value=7.9 Score=25.87 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=37.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| +|+.+ +++..+||.||-.++.-. +. +.+..++..+ . ...-.+.=+++|
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~l~~~----~~----------------~~v~vN~~~v-~-~~~~~~~~L~~g 53 (65)
T PRK06944 1 MDIQL---NQQTL--SLPDGATVADALAAYGAR----PP----------------FAVAVNGDFV-A-RTQHAARALAAG 53 (65)
T ss_pred CEEEE---CCEEE--ECCCCCcHHHHHHhhCCC----CC----------------eEEEECCEEc-C-chhcccccCCCC
Confidence 67777 88875 457889999998765321 11 1234445432 1 112233448999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|+|-|.+=+
T Consensus 54 D~vei~~~v 62 (65)
T PRK06944 54 DRLDLVQPV 62 (65)
T ss_pred CEEEEEeec
Confidence 999888754
No 91
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=76.57 E-value=15 Score=25.10 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=39.4
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| +|..+++ +.++||.||=.+. ...+. .+.+..++..+. ......+ +++|
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~l----~~~~~---------------~vav~~N~~iv~--r~~~~~~-L~~g 53 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDSL----GFPEK---------------GIAVAVDWSVLP--RSDWATK-LRDG 53 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHHc----CCCCC---------------cEEEEECCcCcC--hhHhhhh-cCCC
Confidence 67777 8987665 6788998886543 22111 235666665442 2333456 9999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|-+++-+
T Consensus 54 D~ieIv~~V 62 (65)
T PRK05863 54 ARLEVVTAV 62 (65)
T ss_pred CEEEEEeec
Confidence 998887654
No 92
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.26 E-value=8.9 Score=29.42 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCccccCCcchh--hhcCCCCCCEEEEEeee
Q 030379 84 NSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLDENSAL--QDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 84 ~sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL--~dyGIkdgd~L~F~~rl 154 (178)
..+||.||=.-|...+-..+.. +.|. -.-..+||+.+- |-..| .+|-+++||.|.|+.-+
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~lFi~~gs------vrpGii~lINd~-----DWEllekedy~ledgD~ivfiSTl 98 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDSLFIHHGS------VRPGIIVLINDM-----DWELLEKEDYPLEDGDHIVFISTL 98 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcceEeeCCc------CcCcEEEEEecc-----chhhhcccccCcccCCEEEEEEec
Confidence 3599999988887755322221 1110 012356777653 23333 37999999999998655
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=75.66 E-value=14 Score=22.78 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
.+.+||+..|.+||...+. .+|..-.+.+....+.......-.=.+..+.++|+...
T Consensus 3 ~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred EEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHh
Confidence 3678999999999999886 78887777776555322211111223567777777643
No 94
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=73.26 E-value=25 Score=27.52 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=43.5
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhccccccccCc----cccc-----cccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGH----RHIS-----WKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~----~~IS-----W~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
..++.|-.=.+||..||=.-|+.... +.|..|. +.|. =+|+-+.+-.+..|.+..+|++||.+.+..-|
T Consensus 36 ~~elqIYtW~d~TLrEL~~Lik~~~~--~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iG 113 (120)
T PF06487_consen 36 RNELQIYTWMDATLRELADLIKDVNP--PARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIG 113 (120)
T ss_dssp TTEEEEEE-TT-BHHHHHHHHHHH-H--HHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT
T ss_pred cCeeEEEEcccCCHHHHHHHHHHhCc--ccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccC
Confidence 34556666788999999999988543 2222222 1111 13445556666667777799999999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
|.|-..
T Consensus 114 Dyidva 119 (120)
T PF06487_consen 114 DYIDVA 119 (120)
T ss_dssp -EEEEE
T ss_pred CEEEEe
Confidence 987543
No 95
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=73.20 E-value=7.8 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=28.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
|+|.+ .-+|...-+.++++.+..||+..|.+.++.
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~ 35 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKL 35 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 44555 447788899999999999999999999874
No 96
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=73.03 E-value=5.3 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=35.1
Q ss_pred EEecCCccccCCcchhhhcCCCCCCEEEEEeeeecCCccccccc
Q 030379 122 CLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVLSKGSGKHSKR 165 (178)
Q Consensus 122 ~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~~~~~~~~~~~ 165 (178)
+|.|.|+.| ..+++|+|| |..++.-.++.+|..++++--.|-
T Consensus 3 ~LW~aGK~l-~~~k~l~dy-~GkNEKtKiivKl~~~g~g~P~RE 44 (98)
T PF11069_consen 3 QLWWAGKEL-QRGKKLSDY-IGKNEKTKIIVKLQKRGQGPPPRE 44 (98)
T ss_pred eEEeccccc-cCCCcHHHh-cCCCcceeEEEEeccCCCCCCCCC
Confidence 788999766 688999999 778888899999999988876553
No 97
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=72.26 E-value=33 Score=24.61 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=49.8
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCcccc--CCcchhhhc
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLL--DENSALQDC 140 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLl--dD~~tL~dy 140 (178)
+.+|.|+--||+.+.-.-..++|+.+|-..|... . ++. ..|.|+ |=-+.+. +.+.+|.+.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~-~~~--------------~~f~L~t~fPRk~~~~~d~~~TL~e~ 67 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-G-YPI--------------DEYKLLSSWPRRDLTQLDPNFTLLEL 67 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-C-CCC--------------CCEEEecCCCCCCCcCCCCCCcHHHc
Confidence 5789999999999888889999999999999753 1 111 123443 3343343 446799999
Q ss_pred CCCCCCEEEE
Q 030379 141 GVRNNSQVQF 150 (178)
Q Consensus 141 GIkdgd~L~F 150 (178)
|+.....|.+
T Consensus 68 gL~p~~~L~V 77 (80)
T cd01771 68 KLYPQETLIL 77 (80)
T ss_pred CCCCCcEEEE
Confidence 9998776654
No 98
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=70.60 E-value=8.4 Score=33.02 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=30.8
Q ss_pred CCceEEEEEccCC---------ceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 63 GSAMRISILKLDG---------TSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 63 G~AMkLtV~k~dg---------~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
|+.|+|.|.+-+. +.|.|.+++..||.|+=..|+...
T Consensus 2 ~~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~~ 47 (239)
T PRK13552 2 GRTLTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREEQ 47 (239)
T ss_pred CceEEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhcC
Confidence 6789999998763 347888889999999999998764
No 99
>PRK07440 hypothetical protein; Provisional
Probab=70.30 E-value=34 Score=23.87 Aligned_cols=65 Identities=11% Similarity=0.220 Sum_probs=42.7
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
+.|+|+| +|+. ++++...||.||=+.. ...++ .+.+..+++.+ ......++-++
T Consensus 3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~~l----~~~~~---------------~vav~~N~~iv--~r~~w~~~~L~ 56 (70)
T PRK07440 3 NPITLQV---NGET--RTCSSGTSLPDLLQQL----GFNPR---------------LVAVEYNGEIL--HRQFWEQTQVQ 56 (70)
T ss_pred CceEEEE---CCEE--EEcCCCCCHHHHHHHc----CCCCC---------------eEEEEECCEEe--CHHHcCceecC
Confidence 4688888 8887 4557889999887533 22122 23566677644 34455667799
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+||.|-++.-+
T Consensus 57 ~gD~IEIv~~v 67 (70)
T PRK07440 57 PGDRLEIVTIV 67 (70)
T ss_pred CCCEEEEEEEe
Confidence 99998776544
No 100
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=69.86 E-value=18 Score=23.69 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=38.2
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-CceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||+.+|.++|.....-. |.--.+.+.... |.......-.=+|..+.+.|+...-
T Consensus 3 i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 3 ISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 67899999999999987764 766667666542 3333333223358999999998864
No 101
>smart00360 RRM RNA recognition motif.
Probab=69.35 E-value=23 Score=21.60 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=37.2
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCC--ce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--TS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg--~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+.+||..+|-++|...+. .+|.--.+.+..... .. +..+ .=.|..+.+.|+...
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v--~f~~~~~a~~a~~~~ 58 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFV--EFESEEDAEKALEAL 58 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEE--EeCCHHHHHHHHHHc
Confidence 467999999999999887 788777777765532 22 2222 124778888887644
No 102
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=69.00 E-value=11 Score=31.67 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=26.7
Q ss_pred hhcCCceEEEEEccCCce---EEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 60 LEMGSAMRISILKLDGTS---FDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~~---~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
+|.=..|+|+....+... +.+-||.++||.||-.+++++++..
T Consensus 15 lE~kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~ 60 (213)
T PF14533_consen 15 LENKKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFS 60 (213)
T ss_dssp HHSB--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----
T ss_pred HhCceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 455566999998665543 6888999999999999999998763
No 103
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=68.75 E-value=32 Score=22.98 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| ||+.+ +++...||.||=.+. ...+. ...+..+|+.+. ...-.++=+++|
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~l----~~~~~---------------~vav~vNg~iv~--r~~~~~~~l~~g 54 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLARE----GLAGR---------------RVAVEVNGEIVP--RSQHASTALREG 54 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHhc----CCCCC---------------eEEEEECCeEeC--HHHcCcccCCCC
Confidence 67777 88865 557788999886543 22112 123445564332 333445558999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|-++.-+
T Consensus 55 D~vei~~~v 63 (66)
T PRK05659 55 DVVEIVHAL 63 (66)
T ss_pred CEEEEEEEe
Confidence 998877654
No 104
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=68.54 E-value=31 Score=23.73 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=40.1
Q ss_pred eEEEEEccCCceEEEEeCCC-CcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNS-ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~s-ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
|+|+| +|+.+.+ +.+ .||.||=+.+ ...+. .+.+..+++.+ ..+...++-+++
T Consensus 1 m~I~v---NG~~~~~--~~~~~tv~~lL~~l----~~~~~---------------~vav~vN~~iv--~r~~w~~~~L~~ 54 (67)
T PRK07696 1 MNLKI---NGNQIEV--PESVKTVAELLTHL----ELDNK---------------IVVVERNKDIL--QKDDHTDTSVFD 54 (67)
T ss_pred CEEEE---CCEEEEc--CCCcccHHHHHHHc----CCCCC---------------eEEEEECCEEe--CHHHcCceecCC
Confidence 67777 8987654 565 6899886643 22222 12455667644 344566677999
Q ss_pred CCEEEEEeee
Q 030379 145 NSQVQFVPFV 154 (178)
Q Consensus 145 gd~L~F~~rl 154 (178)
||.|-++.-+
T Consensus 55 gD~iEIv~~V 64 (67)
T PRK07696 55 GDQIEIVTFV 64 (67)
T ss_pred CCEEEEEEEe
Confidence 9998777654
No 105
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=68.09 E-value=30 Score=23.78 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHhhhcCC---ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 44 DVPKKPTLSDVDTLISLEMGS---AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 44 dlp~~~t~~ev~~~Iale~G~---AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
-+|+++|.+|+.+.|+-.++. .++|.-+-.+|..+++ . +=.||..|+....
T Consensus 16 ~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l--~---sd~Dl~~a~~~~~ 69 (81)
T smart00666 16 SVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSL--T---SDEDLEEAIEEYD 69 (81)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEe--c---CHHHHHHHHHHHH
Confidence 488999999999999999988 5888888777775433 3 3569999998774
No 106
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=66.59 E-value=29 Score=27.80 Aligned_cols=70 Identities=10% Similarity=0.026 Sum_probs=33.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccccccccCcccccccccccee-----EEecCCccccCCcchhhhcCCCCCCEEEE
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANY-----CLSHQNQKLLDENSALQDCGVRNNSQVQF 150 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~-----~L~~~g~kLldD~~tL~dyGIkdgd~L~F 150 (178)
.|.|+.++|..+|=.+|+.+|.....- -+.+.--..-|+.. -............-+|.++....|+.+.|
T Consensus 21 ri~Vp~~~tl~~Lh~~Iq~afgw~~~H--L~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~Y 95 (179)
T PF07929_consen 21 RIEVPADITLADLHEVIQAAFGWDDDH--LYEFFIGGERYGIPDEDGMDFSEGDEIKDASEVKLGELLLEEGDKFTY 95 (179)
T ss_dssp EEEEETT-BHHHHHHHHHHHTT----S---EEEEEE-TTTSSESSS---------EEETTT-BHHHC-BTTC-EEEE
T ss_pred EEEECCCCCHHHHHHHHHHHhCcCCCE--eEEEEECCCccccccccccccccCCCcceeeeEEhhhhccCcCCEEEE
Confidence 899999999999999999999632110 00000001111111 11111222345667788887677777654
No 107
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=66.19 E-value=11 Score=26.95 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCc---eEEEEEccCCce
Q 030379 45 VPKKPTLSDVDTLISLEMGSA---MRISILKLDGTS 77 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~A---MkLtV~k~dg~~ 77 (178)
+|+..|+.++...|....|-+ |+|.+...++..
T Consensus 19 ~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~ 54 (84)
T cd01789 19 YSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKL 54 (84)
T ss_pred cCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCe
Confidence 899999999999999999864 999886666554
No 108
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=65.57 E-value=20 Score=24.13 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=36.7
Q ss_pred CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 74 dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
+|+.++ ++..+||.||...+. ++ +. .+.+..+|+.+. ...-.++-|++||+|.+.+-
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l~--~~--~~---------------~i~V~vNg~~v~--~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEELG--LD--PR---------------GVAVALNGEIVP--RSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHcC--CC--CC---------------cEEEEECCEEcC--HHHcCceecCCCCEEEEEEe
Confidence 677654 477899999987764 11 11 224455665332 33334456999999999876
Q ss_pred e
Q 030379 154 V 154 (178)
Q Consensus 154 l 154 (178)
+
T Consensus 62 v 62 (65)
T cd00565 62 V 62 (65)
T ss_pred c
Confidence 5
No 109
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=65.31 E-value=7.2 Score=28.53 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHH-HhccccccccCccccccccccceeEEecCCcc---ccCCcchhhhcCCCCCCEEEEEeee
Q 030379 84 NSATVKDLKLAIKK-KVNDMEQSNLGHRHISWKHVWANYCLSHQNQK---LLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 84 ~sATV~DLKkAI~~-~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~k---LldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
..+|+.+|-..|-+ .+.... .-|+. .--++|+..- -....++|+++||++|+.|++..-.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~------P~v~~-----~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNE------PDVSV-----GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SS------EEEEE-----S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hhCcHHHHHHHHHHhccCCCC------CEEEe-----CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 45999999886644 333211 11222 2245555432 2346789999999999999876543
No 110
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=64.09 E-value=19 Score=31.33 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=52.4
Q ss_pred EEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 67 RISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 67 kLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
+|.|-..... .++...+++.||++||..++-...-.+.. |-.. |.+.+ -.+.+ .|.++++.|..|+..||
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~-M~l~------l~~~~-d~~~~-~lsn~d~~lg~~~~~Dg 73 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAES-MELE------LYDGD-DKKVS-ALSNEDADLGFYKVEDG 73 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccc-eEEE------EEcCC-Cceee-eccCCcccccccCCCCc
Confidence 4555333222 35677799999999999999887543331 1110 00000 00113 57889999999999999
Q ss_pred CEEEEEeeeecC
Q 030379 146 SQVQFVPFVLSK 157 (178)
Q Consensus 146 d~L~F~~rl~~~ 157 (178)
-.||.+..--++
T Consensus 74 ~rihviD~~~~~ 85 (234)
T KOG3206|consen 74 LRIHVIDSNAQS 85 (234)
T ss_pred eEEEEEecCccc
Confidence 999998765443
No 111
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.03 E-value=16 Score=31.82 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=49.9
Q ss_pred CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 74 dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
.++.|-.+++.-.||.++|.+.+.+-...+..| -..|+| +++-|+..|..++|.+|..-.|-.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQ---------------rif~Sg-~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQ---------------RIFFSG-GVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhh---------------eeeccC-CceeccccceeeeecCCCEEEEEEE
Confidence 345567777888999999999998865443321 234666 4778999999999999987777666
Q ss_pred eecC
Q 030379 154 VLSK 157 (178)
Q Consensus 154 l~~~ 157 (178)
|.+.
T Consensus 219 Vlq~ 222 (231)
T KOG0013|consen 219 VLQE 222 (231)
T ss_pred eccC
Confidence 6544
No 112
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=63.84 E-value=16 Score=27.99 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=31.1
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
-|.|=+.|++.-.+..+.++||.||=..+.+++-.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l 38 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYL 38 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcC
Confidence 46778899999999999999999999999999743
No 113
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=63.73 E-value=60 Score=24.94 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=50.2
Q ss_pred HHHHHHhhhcCCceEEEEEccCCceE------EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC
Q 030379 53 DVDTLISLEMGSAMRISILKLDGTSF------DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ 126 (178)
Q Consensus 53 ev~~~Iale~G~AMkLtV~k~dg~~~------~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~ 126 (178)
|...+++ .+..-+=|.|.+...+.+ ...||.+.||+++...|.+.....+.. .+-|.-+
T Consensus 13 e~~~ir~-kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~--------------slfl~Vn 77 (112)
T cd01611 13 EVERIRA-KYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEK--------------ALFLFVN 77 (112)
T ss_pred HHHHHHH-HCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccc--------------eEEEEEC
Confidence 4445443 666777788877664442 346899999999999999998654441 2334334
Q ss_pred CccccCCcchhhh----cCCCCCCEEE
Q 030379 127 NQKLLDENSALQD----CGVRNNSQVQ 149 (178)
Q Consensus 127 g~kLldD~~tL~d----yGIkdgd~L~ 149 (178)
+ .+..-+.++.+ |+..|| .|+
T Consensus 78 ~-~~p~~~~~~~~lY~~~kd~DG-fLy 102 (112)
T cd01611 78 N-SLPPTSATMSQLYEEHKDEDG-FLY 102 (112)
T ss_pred C-ccCCchhHHHHHHHHhCCCCC-EEE
Confidence 4 45555666664 565554 344
No 114
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=63.34 E-value=12 Score=34.89 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=52.3
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCC-cchhhhcCCCCC
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDE-NSALQDCGVRNN 145 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD-~~tL~dyGIkdg 145 (178)
+|++....-..|++.|..+-....|+.-+......+.. ..-|+|++-++..+ ...|..+|.++|
T Consensus 4 tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~---------------~~~li~n~~~l~s~~s~~l~Q~g~~~~ 68 (380)
T KOG0012|consen 4 TVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYD---------------PSDLIYNPRPLVSNESQGLTQIGLKDG 68 (380)
T ss_pred EEEEEecceeeeccccccccchhhHHHHHHHHhCcccc---------------hhhcccCCCccccchhhhhhhcccccc
Confidence 34443336667888888888888888888777654322 11477777777766 788999999999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|.|-.+-
T Consensus 69 dsl~lr~ks 77 (380)
T KOG0012|consen 69 DSLALRCKS 77 (380)
T ss_pred eeEeccCCC
Confidence 999886553
No 115
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=61.74 E-value=7.9 Score=27.57 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHhhhcCCc---eEEEEEccCCceEEEEe-CCCCcHH
Q 030379 44 DVPKKPTLSDVDTLISLEMGSA---MRISILKLDGTSFDVAV-MNSATVK 89 (178)
Q Consensus 44 dlp~~~t~~ev~~~Iale~G~A---MkLtV~k~dg~~~~V~V-~~sATV~ 89 (178)
.+|...|+.|+...|....|-+ |+|.+....+....... ...+|+.
T Consensus 19 r~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~ 68 (87)
T PF14560_consen 19 RFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLG 68 (87)
T ss_dssp EEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCC
T ss_pred EcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEee
Confidence 3789999999999999999976 99999844444444444 3345543
No 116
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=60.50 E-value=65 Score=24.49 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=45.6
Q ss_pred HhhhcCCceEEEEEccCCceE------EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCcccc
Q 030379 58 ISLEMGSAMRISILKLDGTSF------DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLL 131 (178)
Q Consensus 58 Iale~G~AMkLtV~k~dg~~~------~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLl 131 (178)
|.-.+-.-+=|.|.+..++.+ .+-||.+.||.+|...|.+.....+. + .+.|..++ .|.
T Consensus 9 ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~-~-------------alfl~Vn~-~lp 73 (104)
T PF02991_consen 9 IREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPE-Q-------------ALFLFVNN-TLP 73 (104)
T ss_dssp HHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TT-S--------------EEEEBTT-BES
T ss_pred HHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCC-c-------------eEEEEEcC-ccc
Confidence 445566677788887777663 45689999999999999999876544 1 34555555 576
Q ss_pred CCcchhhh
Q 030379 132 DENSALQD 139 (178)
Q Consensus 132 dD~~tL~d 139 (178)
..+.++.+
T Consensus 74 ~~s~tm~e 81 (104)
T PF02991_consen 74 STSSTMGE 81 (104)
T ss_dssp STTSBHHH
T ss_pred chhhHHHH
Confidence 77777765
No 117
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=60.35 E-value=6.3 Score=36.48 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=43.5
Q ss_pred eEEEEEccCCceEEEE--eCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTSFDVA--VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~--V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
.++.|+.-+-+.-++. .+..-||.+||.-....++..|-. .+..|+|+|+ |++|...|+|.=+|
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~-------------~dqrliYsgk-llld~qcl~d~lrk 75 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLE-------------LDQRLIYSGK-LLLDHQCLTDWLRK 75 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCch-------------hhHHHHhhcc-ccccchhHHHHHHH
Confidence 4666654444443444 455689999999999888644321 1336999995 88899899886444
No 118
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=58.77 E-value=52 Score=26.74 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=34.2
Q ss_pred eEEEEEccCCceEEEEeCC-CCcHHHHHH-HHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTSFDVAVMN-SATVKDLKL-AIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~-sATV~DLKk-AI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
|||||+.. ...+-|-..+ +-||.+|=. |+.++.+ ... ... =+|-+| +.|.+.+--|++.++.|.|- +-
T Consensus 1 mkvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K-~~~--~~~--~~~v~V---~~l~~~dggiLd~DD~l~dV-~d 70 (145)
T PF12053_consen 1 MKVTVCFG-RTRVVVPCGDGQLTVRDLIQQALRRYRK-AKE--KDP--DYWVVV---HHLEYTDGGILDPDDVLCDV-VD 70 (145)
T ss_dssp -EEEEEET-TEEEEEEESSS---HHHHHHHHHHHHHH-HTT----T--TS-EEE---EEEE-SSS-EE-TTS-HHHH-S-
T ss_pred CeEEEEeC-CeEEEEEeCCCCccHHHHHHHHhHhHHH-hhc--cCC--CceEEE---eeEEecCCceeccccceeEe-cc
Confidence 89999654 4544444443 489999954 3444332 222 111 145444 23443322467777788776 44
Q ss_pred CCCEEEE
Q 030379 144 NNSQVQF 150 (178)
Q Consensus 144 dgd~L~F 150 (178)
|.++|.-
T Consensus 71 d~d~liA 77 (145)
T PF12053_consen 71 DRDQLIA 77 (145)
T ss_dssp TTEEEEE
T ss_pred Chhhhhe
Confidence 7777643
No 119
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=55.38 E-value=53 Score=22.60 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=27.1
Q ss_pred EEEEccCCc----eEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 68 ISILKLDGT----SFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 68 LtV~k~dg~----~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
|.|-..+++ .-.|.|+.++|+.|+=.++.+++..
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 444445666 6688899999999999999999875
No 120
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=55.14 E-value=25 Score=23.97 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCceEEEEeC-CCCcHHHHHHHHHHHhccc
Q 030379 74 DGTSFDVAVM-NSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 74 dg~~~~V~V~-~sATV~DLKkAI~~~~~~~ 102 (178)
+|....+.|+ .++|..+|+..|...++..
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~ 37 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLD 37 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCC
Confidence 4667778888 8999999999999999753
No 121
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=54.67 E-value=40 Score=23.11 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=42.2
Q ss_pred cCCCCCCCHHHHHHHHhhhcCC---ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 43 ADVPKKPTLSDVDTLISLEMGS---AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 43 ~dlp~~~t~~ev~~~Iale~G~---AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
-.+|.++|.+++...|+-.+|. .++|.-.-.+|...+| . +=.||..|++....
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i--~---sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTI--S---SDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEE--S---SHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEe--C---CHHHHHHHHHHHHh
Confidence 4588899999999999999998 5888887778876444 3 45789999988753
No 122
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=53.59 E-value=16 Score=24.69 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=19.6
Q ss_pred eEEEEEccCCceEEEE---eCCCCcHHHH
Q 030379 66 MRISILKLDGTSFDVA---VMNSATVKDL 91 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~---V~~sATV~DL 91 (178)
|.|++++.||..|.|. ...+.|+.++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~m 29 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNM 29 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHH
Confidence 7899999999999987 3556666554
No 123
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=53.40 E-value=86 Score=22.87 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=41.6
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
-|+|+| ||+.+.+ +.+.||.||=... ...+. .+.+..+|+.+ ..+.-.++-+++
T Consensus 18 ~m~I~V---NG~~~~~--~~~~tl~~LL~~l----~~~~~---------------~vAVevNg~iV--pr~~w~~t~L~e 71 (84)
T PRK06083 18 LITISI---NDQSIQV--DISSSLAQIIAQL----SLPEL---------------GCVFAINNQVV--PRSEWQSTVLSS 71 (84)
T ss_pred eEEEEE---CCeEEEc--CCCCcHHHHHHHc----CCCCc---------------eEEEEECCEEe--CHHHcCcccCCC
Confidence 466777 8997555 6788999886643 22222 12455667644 455666777999
Q ss_pred CCEEEEEeee
Q 030379 145 NSQVQFVPFV 154 (178)
Q Consensus 145 gd~L~F~~rl 154 (178)
||.|-++.-+
T Consensus 72 gD~IEIv~~V 81 (84)
T PRK06083 72 GDAISLFQAI 81 (84)
T ss_pred CCEEEEEEEe
Confidence 9998776544
No 124
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=52.44 E-value=60 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.8
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
++...|.|..++|+.|+=.++.+++..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l 41 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHL 41 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 677799999999999999999998864
No 125
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=51.59 E-value=37 Score=22.83 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=37.4
Q ss_pred cCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEe
Q 030379 73 LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 73 ~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
.+|+.+++ +.++||.||-..+. ..+. .+.+..+++.+ ....-.++-+++||.|-+.+
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l~----~~~~---------------~v~v~vN~~iv--~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESLG----LDPR---------------RVAVAVNGEIV--PRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHcC----CCCC---------------eEEEEECCEEc--CHHHcCceecCCCCEEEEEE
Confidence 37776554 78899999988653 1111 23455566544 23334456799999998887
Q ss_pred ee
Q 030379 153 FV 154 (178)
Q Consensus 153 rl 154 (178)
-+
T Consensus 60 ~V 61 (64)
T TIGR01683 60 FV 61 (64)
T ss_pred ec
Confidence 55
No 126
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=51.38 E-value=18 Score=30.98 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=40.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCc-----cccCCcchhhhcCCCCCCEEEEEee
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQ-----KLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~-----kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
.+.|+.+++|.+|=..|.+.....+... .+.|+-. ..++.+.++....|.|||.|.|-+.
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~---------------l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTP---------------LLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT-----------------EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCc---------------eEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEec
Confidence 6778999999999999999876543321 3444421 1237889999999999999999987
Q ss_pred ee
Q 030379 154 VL 155 (178)
Q Consensus 154 l~ 155 (178)
..
T Consensus 153 ~~ 154 (249)
T PF12436_consen 153 PS 154 (249)
T ss_dssp -G
T ss_pred cc
Confidence 75
No 127
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=50.93 E-value=48 Score=24.45 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCccccCCcchh--hhcCCCCCCEEEEEeee
Q 030379 83 MNSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLDENSAL--QDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 83 ~~sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL--~dyGIkdgd~L~F~~rl 154 (178)
...+||.||=..+...++....+ ..|. -+.+.+++-+- .|-..| -++-+++||+|.|.+=+
T Consensus 26 ~~~~tV~dll~~L~~~~~~~~~~lf~~~g~--------lr~~i~VlvN~---~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 26 EKPVTVGDLLDYVASNLLEERPDLFIEGGS--------VRPGIIVLIND---TDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred CCCCcHHHHHHHHHHhCchhhhhhEecCCc--------ccCCEEEEECC---ccccccCCcccCCCCcCEEEEECCC
Confidence 35689999999998887421110 1111 01223333321 122334 25779999999998754
No 128
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=50.89 E-value=44 Score=22.87 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=26.9
Q ss_pred eEEEEEccCCceE-EEEeCCCCcHHHHHHHHHHHhccc
Q 030379 66 MRISILKLDGTSF-DVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 66 MkLtV~k~dg~~~-~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
++|.+.- +|... .+.++.+.|..+|...|...++..
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 2 VRVKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp EEEEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTS
T ss_pred EEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4555533 34444 488999999999999999999754
No 129
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=50.39 E-value=84 Score=21.85 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=41.2
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec---C---CccccCCcchhh--hcCCCCCC
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH---Q---NQKLLDENSALQ--DCGVRNNS 146 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~---~---g~kLldD~~tL~--dyGIkdgd 146 (178)
++.-.|.|+.++|..|+=.++.+++..... |++|+|+- + ...|.++..-|. ......+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~-------------~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~ 78 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDD-------------PEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQRE 78 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCC-------------cccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCC
Confidence 666799999999999999999999864211 23566663 1 224545555544 23444444
Q ss_pred EEEEEee
Q 030379 147 QVQFVPF 153 (178)
Q Consensus 147 ~L~F~~r 153 (178)
...|+-|
T Consensus 79 ~~~F~lr 85 (87)
T cd01768 79 DLRFLLR 85 (87)
T ss_pred cEEEEEe
Confidence 5566543
No 130
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=50.01 E-value=15 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=21.6
Q ss_pred eEEEEeCCCCc---HHHHHHHHHHHhccccccccCccccccccccce
Q 030379 77 SFDVAVMNSAT---VKDLKLAIKKKVNDMEQSNLGHRHISWKHVWAN 120 (178)
Q Consensus 77 ~~~V~V~~sAT---V~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~ 120 (178)
.++|.+|.+.. +.++|..=.+..... ++ .|+ |+|+|+-
T Consensus 5 ~m~V~~P~~~~~~~~~~i~a~Eka~a~eL-q~-~Gk----~~~lWRv 45 (90)
T TIGR03221 5 RMDVNLPVDMPAEKAAAIKAREKAYAQEL-QR-EGK----WRHLWRV 45 (90)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHH-Hh-CCc----eEEEEEe
Confidence 46788888744 444554433333222 32 353 8999985
No 131
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=49.73 E-value=26 Score=25.53 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 78 FDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 78 ~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
+++.|+.+||+.++|..+-+....+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~ 26 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKY 26 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGS
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhC
Confidence 4788999999999999877665443
No 132
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=49.27 E-value=9.5 Score=28.15 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=23.8
Q ss_pred CccccCCCCCCCHHHHHHHHhhhcCCceE
Q 030379 39 DPILADVPKKPTLSDVDTLISLEMGSAMR 67 (178)
Q Consensus 39 Dp~L~dlp~~~t~~ev~~~Iale~G~AMk 67 (178)
||+|++.|. |+--..+.+|+.+=|...
T Consensus 3 DPLlnefP~--tvHGfRCMLAiKYlq~~~ 29 (78)
T PF01524_consen 3 DPLLNEFPE--TVHGFRCMLAIKYLQLVE 29 (78)
T ss_pred ccccccCCc--cccchhHHHHHHHHHHcc
Confidence 899999998 778899999999987754
No 133
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=48.31 E-value=25 Score=25.80 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=38.2
Q ss_pred EEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCcc-c-----cCCcchhhhcCCCCCCEEEEEe
Q 030379 80 VAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQK-L-----LDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 80 V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~k-L-----ldD~~tL~dyGIkdgd~L~F~~ 152 (178)
|+|++++|+.||=..+.....+.-. +++ |+ . .+--|...+.+ | -+-.++|.+. +.+|++|++-.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk-~PS---lt--~--~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLK-KPS---LT--T--ANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--S-S-E---EE--S--SEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcC-CCc---cc--C--CCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 5789999999999999887322111 010 11 0 01133333321 1 2457899999 99999988743
No 134
>PRK06437 hypothetical protein; Provisional
Probab=48.10 E-value=89 Score=21.49 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=35.7
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
+..-.++++..+||.||=+.+ ...+. .+.+.-+|+.+ . .++-+++||.|.+.+-+
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~L----gi~~~---------------~vaV~vNg~iv-~-----~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDL----GLDEE---------------EYVVIVNGSPV-L-----EDHNVKKEDDVLILEVF 64 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHc----CCCCc---------------cEEEEECCEEC-C-----CceEcCCCCEEEEEecc
Confidence 344567778889999986554 22112 22455566544 3 56679999999988755
No 135
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=47.20 E-value=36 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=26.9
Q ss_pred CCHHHHHHHH-hhhcCCceEEEEEccCCceEEEEe
Q 030379 49 PTLSDVDTLI-SLEMGSAMRISILKLDGTSFDVAV 82 (178)
Q Consensus 49 ~t~~ev~~~I-ale~G~AMkLtV~k~dg~~~~V~V 82 (178)
-+..++...| ....|+.++|+|.+ +|+...++|
T Consensus 47 ~~~~~~~~~l~~~~~g~~v~l~v~R-~g~~~~~~v 80 (82)
T PF13180_consen 47 NSSEDLVNILSKGKPGDTVTLTVLR-DGEELTVEV 80 (82)
T ss_dssp SSHHHHHHHHHCSSTTSEEEEEEEE-TTEEEEEEE
T ss_pred CCHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEE
Confidence 4778888888 78899999999955 788877766
No 136
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=46.73 E-value=1e+02 Score=22.88 Aligned_cols=75 Identities=9% Similarity=0.152 Sum_probs=50.8
Q ss_pred eEEEEEccCCceEEE-EeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDV-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V-~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
.+|++-+.....|.| .||++|-.-..=+-.++.|...++. .-+++.+|..+ +-..+--+.-++.
T Consensus 5 FkitltSdp~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~T--------------sAiiTndGvGI-NP~qtAGnvflkh 69 (82)
T cd01766 5 FKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAAT--------------SAIITNDGIGI-NPAQTAGNVFLKH 69 (82)
T ss_pred EEEEecCCCCCcceEEeccccCchHHHHHHHHHhcCCCccc--------------eeEEecCcccc-Chhhcccceeeec
Confidence 577777777777755 4888876666555555566543331 22677778766 4566777778899
Q ss_pred CCEEEEEeeee
Q 030379 145 NSQVQFVPFVL 155 (178)
Q Consensus 145 gd~L~F~~rl~ 155 (178)
|++|..++|-+
T Consensus 70 gselrliPRDr 80 (82)
T cd01766 70 GSELRLIPRDR 80 (82)
T ss_pred CCEeeeccccc
Confidence 99999998754
No 137
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=46.47 E-value=88 Score=20.95 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=23.6
Q ss_pred EEEccCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 69 SILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 69 tV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+|..-||+..+ ++..+|+.|+=..|...+.
T Consensus 2 ~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~ 31 (60)
T PF02824_consen 2 RVYLPDGSIKE--LPEGSTVLDVAYSIHSSLA 31 (60)
T ss_dssp EEEETTSCEEE--EETTBBHHHHHHHHSHHHH
T ss_pred EEECCCCCeee--CCCCCCHHHHHHHHCHHHH
Confidence 34447888755 6899999999999998764
No 138
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=45.44 E-value=21 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHH
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI 95 (178)
|+|.| ..+++.+.+++.+++|..+|-+++
T Consensus 1 mkI~i-~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKI-TIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEE-EETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEE-EECCEEEEEEECCCHHHHHHHHhC
Confidence 66776 446999999999998888776654
No 139
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=45.33 E-value=37 Score=24.39 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 85 SATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 85 sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
-+||.+|...+.+.+...... ... ..+.....++.+.+ . ++-|++||+|.|.+.+.
T Consensus 27 ~~tv~~L~~~l~~~~~~~~~~-~~~---------~~~v~~~~~~~~~~-~----~t~L~dGDeVa~~PPVs 82 (84)
T COG1977 27 GATVGELEELLPKEGERWLLA-LED---------NIVVNAANNEFLVG-L----DTPLKDGDEVAFFPPVS 82 (84)
T ss_pred HHHHHHHHHHHHhhhhhHHhc-cCc---------cceEEeeeceeecc-c----cccCCCCCEEEEeCCCC
Confidence 489999988887766533221 110 01122223343332 2 34589999999999874
No 140
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=45.31 E-value=12 Score=26.22 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=11.8
Q ss_pred cchhhhcCCCCCCEEEE
Q 030379 134 NSALQDCGVRNNSQVQF 150 (178)
Q Consensus 134 ~~tL~dyGIkdgd~L~F 150 (178)
.+.|...|+++||+|..
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 57899999999999864
No 141
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=44.48 E-value=62 Score=23.82 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=40.4
Q ss_pred CCC--CCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 45 VPK--KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 45 lp~--~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+|+ .+|.+++...|+--+|-. .++++=.|...=+|.+. |=+||..||.-+-
T Consensus 16 ~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYlDde~e~v~ls---sd~eLeE~~rl~~ 68 (81)
T cd06396 16 VSDSENTTWASVEAMVKVSFGLN-DIQIKYVDEENEEVSVN---SQGEYEEALKSAV 68 (81)
T ss_pred ecCCCCCCHHHHHHHHHHHhCCC-cceeEEEcCCCCEEEEE---chhhHHHHHHHHH
Confidence 566 889999999999999988 88887777777677765 4578888887553
No 142
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=43.05 E-value=1.4e+02 Score=23.58 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcCCceEEEEEccCCce--EEE-EeCCCCcHHHHHHHHHHHhccccc
Q 030379 52 SDVDTLISLEMGSAMRISILKLDGTS--FDV-AVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 52 ~ev~~~Iale~G~AMkLtV~k~dg~~--~~V-~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
+|...+.+ .+-..+=|.|-+.+.+. -.. -||.+.||+++...|.+..+..++
T Consensus 15 ~e~~~Ir~-kyPdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~ 69 (121)
T PTZ00380 15 AECARLQA-KYPGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAK 69 (121)
T ss_pred HHHHHHHH-HCCCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChh
Confidence 34555333 66666777777655322 234 589999999999999999876555
No 143
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=42.18 E-value=17 Score=25.53 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.4
Q ss_pred cchhhhcCCCCCCEEEEE
Q 030379 134 NSALQDCGVRNNSQVQFV 151 (178)
Q Consensus 134 ~~tL~dyGIkdgd~L~F~ 151 (178)
.+.|...|+++||+|..-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 578999999999998753
No 144
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=40.37 E-value=87 Score=19.15 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=38.7
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCC---ceE-EEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDG---TSF-DVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg---~~~-~V~V~~sATV~DLKkAI~~~ 98 (178)
+++||+.+|-++|...++- +|....+.+..... ..+ -|+. .|..+.+.|+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f---~s~~~a~~a~~~~ 60 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEF---EDEEDAEKALEAL 60 (74)
T ss_pred EeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEE---CCHHHHHHHHHHh
Confidence 6789999999999999887 48888888876543 222 2222 3778888888654
No 145
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=40.10 E-value=90 Score=22.65 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec-CCccccCCcchhhhcCCCCCCEEEEE
Q 030379 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH-QNQKLLDENSALQDCGVRNNSQVQFV 151 (178)
Q Consensus 74 dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~-~g~kLldD~~tL~dyGIkdgd~L~F~ 151 (178)
+|++.+|+-..+|.. --+++.+.... ...|+..=+| -|-- +|+ ++|-++++.|||+.+|-+|..-
T Consensus 4 NGqPv~VEANvnaPL---h~v~akALe~s--gNvgQP~ENW-------ElkDe~G~-vlD~~kKveD~GftngvkLFLs 69 (76)
T PF10790_consen 4 NGQPVQVEANVNAPL---HPVRAKALEQS--GNVGQPPENW-------ELKDESGQ-VLDVNKKVEDFGFTNGVKLFLS 69 (76)
T ss_pred CCCceeeecCCCCcc---hHHHHHHHhhc--cccCCCcccc-------eeeccCCc-EeeccchhhhccccccceEEEE
Confidence 677777776555543 33444444321 1223333355 2333 354 6788999999999999887654
No 146
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=39.38 E-value=76 Score=28.69 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=39.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|-+||..+.+ .+|.-..+.|.+. .+.+ |.++ .=+|..+-++||+..
T Consensus 111 fVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFV--eF~~~e~A~~Ai~~L 169 (346)
T TIGR01659 111 IVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFV--DFGSEADSQRAIKNL 169 (346)
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEE--EEccHHHHHHHHHHc
Confidence 4567999999999999987 5788777777543 3433 3333 236889999999764
No 147
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=39.37 E-value=84 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=24.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
|+|.|. ..|..+-+.||++.+..||...|...++.
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~ 37 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGF 37 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 555553 45666777777777788888888777764
No 148
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=38.76 E-value=86 Score=28.35 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=42.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
++.+||..+|-+||..+. -.+|....+.|... +|.+-.+-.-.=++..+..+||+....
T Consensus 197 fV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 197 YVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred EEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 567899999999999887 47888777766543 455433333344689999999998754
No 149
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=36.94 E-value=1.5e+02 Score=20.86 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=40.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|.+ +|+. ++++...||+||=... .+.++ .+.+..+|+.+. +..-.++-+++|
T Consensus 3 m~i~~---ng~~--~e~~~~~tv~dLL~~l----~~~~~---------------~vav~vNg~iVp--r~~~~~~~l~~g 56 (68)
T COG2104 3 MTIQL---NGKE--VEIAEGTTVADLLAQL----GLNPE---------------GVAVAVNGEIVP--RSQWADTILKEG 56 (68)
T ss_pred EEEEE---CCEE--EEcCCCCcHHHHHHHh----CCCCc---------------eEEEEECCEEcc--chhhhhccccCC
Confidence 55555 5776 5556668999985543 22222 346677787553 334456678999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
|.|.+++-+
T Consensus 57 D~ievv~~v 65 (68)
T COG2104 57 DRIEVVRVV 65 (68)
T ss_pred CEEEEEEee
Confidence 998887655
No 150
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=36.36 E-value=1.5e+02 Score=21.96 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
.|..+-.+||..-..-++||.|.+.--.. . +-| | =-+=.||-+||+-.
T Consensus 16 f~RPvkf~dl~~kv~~afGq~mdl~ytn~-e--L~i--P-l~~Q~DLDkAie~l 63 (79)
T cd06405 16 FPRPVKFKDLQQKVTTAFGQPMDLHYTNN-E--LLI--P-LKNQEDLDRAIELL 63 (79)
T ss_pred cCCCccHHHHHHHHHHHhCCeeeEEEecc-c--EEE--e-ccCHHHHHHHHHHH
Confidence 57889999999999999999999988332 2 323 2 23678999999865
No 151
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=36.35 E-value=1.1e+02 Score=20.24 Aligned_cols=32 Identities=9% Similarity=0.363 Sum_probs=24.9
Q ss_pred CHHHHHHHHhhhcCCceEEEEEccCCceEEEEe
Q 030379 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAV 82 (178)
Q Consensus 50 t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V 82 (178)
+.+++..+++-..|..+.|++.+ +|+.+.+.+
T Consensus 46 ~~~~~~~~l~~~~~~~~~l~v~r-~~~~~~~~l 77 (79)
T cd00989 46 SWEDLVDAVQENPGKPLTLTVER-NGETITLTL 77 (79)
T ss_pred CHHHHHHHHHHCCCceEEEEEEE-CCEEEEEEe
Confidence 57888888877778899999954 677776665
No 152
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=35.77 E-value=65 Score=30.19 Aligned_cols=28 Identities=36% Similarity=0.666 Sum_probs=19.3
Q ss_pred HHHHHHHH----hhh--cCccccCCCCCC--CHHHH
Q 030379 27 ARLHSTLT----ALL--DDPILADVPKKP--TLSDV 54 (178)
Q Consensus 27 ~~~~~~l~----~l~--~Dp~L~dlp~~~--t~~ev 54 (178)
.+++.+|+ ..+ .||++.++|-++ |++||
T Consensus 35 ~fLek~l~~E~~~~lsLGDPLf~~~~~~~~kt~e~i 70 (392)
T PF07340_consen 35 QFLEKMLADETNTQLSLGDPLFPDVSEDPFKTFEDI 70 (392)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCCchhhHHHH
Confidence 45555554 344 799999999766 66666
No 153
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=35.33 E-value=1.3e+02 Score=23.56 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=40.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|-++|..+.. .+|.-..+.|... ++.+ |.++ .=++..+...||...
T Consensus 38 fVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV--~F~~~e~A~~Al~~l 96 (144)
T PLN03134 38 FIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFV--NFNDEGAATAAISEM 96 (144)
T ss_pred EEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEE--EECCHHHHHHHHHHc
Confidence 3467999999999999997 5898877777644 3433 4443 335789999999765
No 154
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=35.16 E-value=1.2e+02 Score=22.15 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=29.5
Q ss_pred cCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 62 MGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 62 ~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
.+..++|+|... +..++.+.|+.+.|+.+|-..+-++
T Consensus 13 ~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 13 QNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp SSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 466799999887 6677999999999999998766665
No 155
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=35.12 E-value=1.7e+02 Score=21.08 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHhhhcC----CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 44 DVPKKPTLSDVDTLISLEMG----SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 44 dlp~~~t~~ev~~~Iale~G----~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
-||+..+.+++...|+-.++ +.+.|.=.-.+|....++ |=.||..||.-.
T Consensus 15 ~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~lt-----sd~DL~eai~i~ 68 (82)
T cd06407 15 RLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLT-----CDADLEECIDVY 68 (82)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEee-----cHHHHHHHHHHH
Confidence 38999999999999998776 456666666666654442 557999999855
No 156
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=35.05 E-value=81 Score=27.34 Aligned_cols=34 Identities=9% Similarity=0.364 Sum_probs=25.8
Q ss_pred eEEEEEccCC-------ceEEEE-eCCCCcHHHHHHHHHHHh
Q 030379 66 MRISILKLDG-------TSFDVA-VMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 66 MkLtV~k~dg-------~~~~V~-V~~sATV~DLKkAI~~~~ 99 (178)
|++.|.+-++ +.|.|. +.+..||.|+=..|+...
T Consensus 3 ~~~~i~R~~~~~~~~~~q~y~v~~~~~~~tvLd~L~~Ik~~~ 44 (250)
T PRK07570 3 LTLKIWRQKGPDDKGKFETYEVDDISPDMSFLEMLDVLNEQL 44 (250)
T ss_pred EEEEEEecCCCCCCceeEEEEecCCCCCCcHHHHHHHHHHHh
Confidence 5678877652 336777 678899999999997664
No 157
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=34.93 E-value=1.4e+02 Score=20.10 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=37.8
Q ss_pred CC-CCCCHHHHHHHHhhhcCC---ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 45 VP-KKPTLSDVDTLISLEMGS---AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 45 lp-~~~t~~ev~~~Iale~G~---AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+| ..+|.+++...|+-.++. ...|+-.-.+|.. |.+. +=.||..|++..-
T Consensus 16 ~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~--v~l~---sd~Dl~~a~~~~~ 69 (81)
T cd05992 16 VVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDL--VTIS---SDEDLEEAIEEAR 69 (81)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCE--EEeC---CHHHHHHHHHHHh
Confidence 45 899999999999999988 4667776666654 3333 3469999998874
No 158
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=14 Score=29.28 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHHhcc----ccccccC--cccccc---ccccceeEEecCC---ccccCCcchhhhcCCCCCCEEEEEe
Q 030379 85 SATVKDLKLAIKKKVND----MEQSNLG--HRHISW---KHVWANYCLSHQN---QKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 85 sATV~DLKkAI~~~~~~----~~~r~~g--~~~ISW---~~VW~~~~L~~~g---~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
+.||.|++.-|.+..+. .|-|.-- .=+|-= ++=-.++.+.++. =.|.++.++|+.|||.|-.++.|--
T Consensus 33 d~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETEis~F~ 112 (127)
T KOG4147|consen 33 DQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETEISFFC 112 (127)
T ss_pred HhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchhhhhhh
Confidence 57999999988887753 2333100 000000 0001133333331 1244588999999999988887643
No 159
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=33.69 E-value=50 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc
Q 030379 78 FDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 78 ~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+++.|+.+||+.++|..+-+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46788999999999998776654
No 160
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=33.67 E-value=96 Score=22.02 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=33.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhcc-ccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEE
Q 030379 79 DVAVMNSATVKDLKLAIKKKVND-MEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 151 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~-~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~ 151 (178)
++.|+..+||.|+=.+|..-+.. +-. -+ ||+ ++..-. +|=+.|||.|.|+
T Consensus 25 ~~~l~~g~tv~d~a~~IH~d~~~~F~~------A~----v~~-------~~~vg~------d~~l~d~DVv~i~ 75 (76)
T cd04938 25 CVLVKKGTTVGDVARKIHGDLEKGFIE------AV----GGR-------RRLEGK------DVILGKNDILKFK 75 (76)
T ss_pred eEEEcCCCCHHHHHHHHhHHHHhccEE------EE----Ecc-------CEEECC------CEEecCCCEEEEE
Confidence 78889999999999999976631 111 11 343 332211 5678899998886
No 161
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=33.62 E-value=76 Score=27.38 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=28.8
Q ss_pred CCceEEEEEccCC-------ceEEEEeCCCCcHHHHHHHHHHH
Q 030379 63 GSAMRISILKLDG-------TSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 63 G~AMkLtV~k~dg-------~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
|..|+|.|.+-++ ++|.|.+.++.||.|+=..|+..
T Consensus 3 ~~~~~~~i~R~~~~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~ 45 (249)
T PRK08640 3 EKTVRLIIKRQDGPDSKPYWEEFEIPYRPNMNVISALMEIRRN 45 (249)
T ss_pred CcEEEEEEEeeCCCCCCceeEEEEecCCCCCcHHHHHHHHHhc
Confidence 4467888887763 34788888999999999999875
No 162
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.04 E-value=1.4e+02 Score=27.29 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=45.8
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| ||+.++ ++.+.||.||=... ...+. .+.+..+|+.+ ..+...++=+++|
T Consensus 1 M~I~V---NGk~~e--l~e~~TL~dLL~~L----~i~~~---------------~VAVeVNgeIV--pr~~w~~t~LkeG 54 (326)
T PRK11840 1 MRIRL---NGEPRQ--VPAGLTIAALLAEL----GLAPK---------------KVAVERNLEIV--PRSEYGQVALEEG 54 (326)
T ss_pred CEEEE---CCEEEe--cCCCCcHHHHHHHc----CCCCC---------------eEEEEECCEEC--CHHHcCccccCCC
Confidence 67777 888754 47788999887643 22222 23566777644 3445566779999
Q ss_pred CEEEEEeeeecCCcc
Q 030379 146 SQVQFVPFVLSKGSG 160 (178)
Q Consensus 146 d~L~F~~rl~~~~~~ 160 (178)
|.|-++.-+.. |++
T Consensus 55 D~IEII~~VgG-Gs~ 68 (326)
T PRK11840 55 DELEIVHFVGG-GSD 68 (326)
T ss_pred CEEEEEEEecC-CCC
Confidence 99998888754 555
No 163
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=31.61 E-value=1.5e+02 Score=28.55 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=46.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc--ccccccCccccccccccceeEEe--cCCccc---cCCcchhh
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND--MEQSNLGHRHISWKHVWANYCLS--HQNQKL---LDENSALQ 138 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~--~~~r~~g~~~ISW~~VW~~~~L~--~~g~kL---ldD~~tL~ 138 (178)
|-+.++.-.|+. .|++.++.+.+-|-..+-.-+.. .|+ ++-+| .+|+.. +..+.++.
T Consensus 1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e---------------~~svc~~p~~qG~~~s~l~dqt~~ 64 (571)
T COG5100 1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPE---------------QISVCSAPDGQGEIFSLLKDQTPD 64 (571)
T ss_pred CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCcc---------------ceEEEeCCCCCceeeecccccChh
Confidence 567777777766 78888888888776666555421 122 22333 334433 45678999
Q ss_pred hcCCCCCCEEEEE
Q 030379 139 DCGVRNNSQVQFV 151 (178)
Q Consensus 139 dyGIkdgd~L~F~ 151 (178)
|.|++.|+.|++-
T Consensus 65 dlGL~hGqmLyl~ 77 (571)
T COG5100 65 DLGLRHGQMLYLE 77 (571)
T ss_pred hhccccCcEEEEE
Confidence 9999999987653
No 164
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.85 E-value=37 Score=25.86 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEeCCC---CcHHHHHHHHHHHhccccccccCccccccccccc
Q 030379 78 FDVAVMNS---ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWA 119 (178)
Q Consensus 78 ~~V~V~~s---ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~ 119 (178)
++|.||.+ .-|+++|.. ++......+++ | +|+++|+
T Consensus 7 Mtv~~PdsMdad~~er~~A~-Eka~s~~Lq~~-G----~~~~lWR 45 (98)
T COG4829 7 MTVRVPDSMDADAVERVRAR-EKARSRELQAQ-G----KLLRLWR 45 (98)
T ss_pred EEEEcCCCCCHHHHHHHHHH-HHHHHHHHHhc-c----hHHHHHh
Confidence 56777765 345555543 33333222333 3 6888887
No 165
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.48 E-value=2.1e+02 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeEEecCCccccCCcchhhh--cCCCCCCEEEEEeee
Q 030379 120 NYCLSHQNQKLLDENSALQD--CGVRNNSQVQFVPFV 154 (178)
Q Consensus 120 ~~~L~~~g~kLldD~~tL~d--yGIkdgd~L~F~~rl 154 (178)
.+||+.+- |-..|.. |-+++||.+.|+.-+
T Consensus 62 iI~LINd~-----DWeLleke~y~ledgDiIvfistl 93 (96)
T COG5131 62 IICLINDM-----DWELLEKERYPLEDGDIIVFISTL 93 (96)
T ss_pred EEEEEcCc-----cHhhhhcccccCCCCCEEEEEecc
Confidence 45666542 4555554 899999999998754
No 166
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=30.25 E-value=1.1e+02 Score=20.51 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=25.5
Q ss_pred CHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++..++.-..|..+.|+|.+.+|..+.+.|.+
T Consensus 49 ~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~~~ 83 (85)
T cd00988 49 SLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTR 83 (85)
T ss_pred CHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEEEE
Confidence 45788877755568889999976548877777643
No 167
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=29.44 E-value=91 Score=22.84 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
..+.+.|+.+||=.|+|.||+..|+..
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~ 47 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVK 47 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCC
Confidence 356788999999999999999999643
No 168
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=28.87 E-value=85 Score=23.77 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
|..=-+.|-..+|..|.|+||-+.-+.--|++|++-..
T Consensus 33 gkrem~iitf~ngatfqvevpgsqhi~sqkk~iermkd 70 (102)
T PF01376_consen 33 GKREMVIITFKNGATFQVEVPGSQHIDSQKKAIERMKD 70 (102)
T ss_dssp TTEEEEEEEETTS-EEEE--SSTTSTTTHHHHHHHHHH
T ss_pred CceeEEEEEecCCcEEEEecCCccchhhhHHHHHHHHh
Confidence 33333455578999999999999999999999998753
No 169
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=27.44 E-value=2e+02 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.3
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
.+-|.||...+..+|...|..++...++
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e 39 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAE 39 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCch
Confidence 6788899999999999999999976443
No 170
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.28 E-value=77 Score=26.50 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhcCccccC-----------CCCCCCHHHHHHHHhhhc
Q 030379 24 MKKARLHSTLTALLDDPILAD-----------VPKKPTLSDVDTLISLEM 62 (178)
Q Consensus 24 ~~~~~~~~~l~~l~~Dp~L~d-----------lp~~~t~~ev~~~Iale~ 62 (178)
.+++--+.+|..|++||.+++ +|...++.||...+.||-
T Consensus 98 dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~ 147 (180)
T KOG0071|consen 98 DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER 147 (180)
T ss_pred hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc
Confidence 567778889999999998865 455567788887777763
No 171
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=27.27 E-value=21 Score=32.46 Aligned_cols=79 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred eEEEEEccCCceEEEEeCC-----CCcHHHHHHHHHHHhcccc----ccccCccccccccccceeE-----EecCCcccc
Q 030379 66 MRISILKLDGTSFDVAVMN-----SATVKDLKLAIKKKVNDME----QSNLGHRHISWKHVWANYC-----LSHQNQKLL 131 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~-----sATV~DLKkAI~~~~~~~~----~r~~g~~~ISW~~VW~~~~-----L~~~g~kLl 131 (178)
++|+++.+-+..+.+.++. +.||.|||.+++..+..-. +...-.. .+. |.|+.+++
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~d---------Kik~~~~~lL~~kkPv- 148 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLD---------KIKNFRCRLLYKKKPV- 148 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHH---------HhhhhhhhheecCccC-
Confidence 7888888877777776533 4899999999999653110 1000011 223 66666555
Q ss_pred CCcchhhhcCCC-------CCCEEEEEeee
Q 030379 132 DENSALQDCGVR-------NNSQVQFVPFV 154 (178)
Q Consensus 132 dD~~tL~dyGIk-------dgd~L~F~~rl 154 (178)
-|.++|.+..-. .|.+|-|-.-+
T Consensus 149 ~~~ktl~e~l~~~~~~l~~~~~~vE~gvMV 178 (309)
T PF12754_consen 149 GDSKTLAEVLADSESRLLSGGKEVEFGVMV 178 (309)
T ss_dssp ------------------------------
T ss_pred CCcCcHHHHHhcccchhccCCceEEEEEEE
Confidence 788999887543 34556664444
No 172
>PLN03213 repressor of silencing 3; Provisional
Probab=27.26 E-value=2.4e+02 Score=27.98 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=48.4
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+|+.++|-+||....+ ++|.--.|.|.+..|.-|.++=..+.+..++.+||...-
T Consensus 15 VGNLSydVTEDDLravFS-eFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLN 71 (759)
T PLN03213 15 VGGLGESVGRDDLLKIFS-PMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYN 71 (759)
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhc
Confidence 456999999999999876 789999999999999889776555667889999999664
No 173
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=27.16 E-value=60 Score=24.28 Aligned_cols=37 Identities=24% Similarity=0.615 Sum_probs=20.5
Q ss_pred eEEEEeCCCCcHHH---HHHHHHHHhccccccccCccccccccccc
Q 030379 77 SFDVAVMNSATVKD---LKLAIKKKVNDMEQSNLGHRHISWKHVWA 119 (178)
Q Consensus 77 ~~~V~V~~sATV~D---LKkAI~~~~~~~~~r~~g~~~ISW~~VW~ 119 (178)
.++|.||.+.+-.+ +|..=+......+. .|. |+|+|+
T Consensus 6 ~m~v~~P~~~~~~~~~~~~a~E~~~a~eLq~--~G~----~~~lWr 45 (91)
T PF02426_consen 6 RMTVNVPPDMPPEEVDRLKAREKARAQELQR--QGK----WRHLWR 45 (91)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH--CCe----eeEEEE
Confidence 35788888755544 44443333322222 353 888887
No 174
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=26.58 E-value=1.5e+02 Score=20.00 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=24.5
Q ss_pred CHHHHHHHHh-hhcCCceEEEEEccCCceEEEEe
Q 030379 50 TLSDVDTLIS-LEMGSAMRISILKLDGTSFDVAV 82 (178)
Q Consensus 50 t~~ev~~~Ia-le~G~AMkLtV~k~dg~~~~V~V 82 (178)
+.+++..++. ...|+.+.|++. ++|..+.+.|
T Consensus 41 ~~~~~~~~l~~~~~~~~v~l~v~-r~g~~~~~~v 73 (79)
T cd00986 41 EAEELIDYIQSKKEGDTVKLKVK-REEKELPEDL 73 (79)
T ss_pred CHHHHHHHHHhCCCCCEEEEEEE-ECCEEEEEEE
Confidence 5788888887 467889999995 5777766655
No 175
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=26.45 E-value=2.8e+02 Score=20.78 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=29.6
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
.|.|---||..+.|.|..+.|..++=+++.+......+
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e 40 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSY 40 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHH
Confidence 35555667888888888888999999999999865433
No 176
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=1e+02 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=24.7
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
...+.+.|+++||=.++|.||++.|.-.+.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~ 50 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVE 50 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEE
Confidence 345778889999999999999999975443
No 177
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=25.79 E-value=1.8e+02 Score=21.43 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=27.5
Q ss_pred EEEEEccCCceEEEEeCC--CCcHHHHHHHHHHHhccc
Q 030379 67 RISILKLDGTSFDVAVMN--SATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~--sATV~DLKkAI~~~~~~~ 102 (178)
+|.+ +-+|...-+.+++ +.|..||+..|++.+...
T Consensus 2 ~vKa-ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKV-TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEE-EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3444 4578888888888 559999999999999754
No 178
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=25.75 E-value=1.9e+02 Score=21.51 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=29.8
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
-|.|-..||++-.|.|+...|+.|.=+.+..+...
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~ 38 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHC 38 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCC
Confidence 35667789999999999999999999888888643
No 179
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=24.73 E-value=2.2e+02 Score=24.36 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=40.0
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+||.++|-+||..+-.- +|.-..+.|.+. +|.+..+---.=.+..|-++||...-
T Consensus 8 V~nLp~~~~e~~l~~~F~~-~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~ 66 (352)
T TIGR01661 8 VNYLPQTMTQEEIRSLFTS-IGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLN 66 (352)
T ss_pred EeCCCCCCCHHHHHHHHHc-cCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcc
Confidence 4679999999999987765 998877777643 45543222223357788899997653
No 180
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=24.72 E-value=2e+02 Score=26.90 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=41.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--CceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+||.++|-++|..+. -.+|.-..|.|++.. +.+..+-.-.=.+..|-.+||...-
T Consensus 5 VgnLp~~vte~~L~~~F-~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln 63 (562)
T TIGR01628 5 VGDLDPDVTEAKLYDLF-KPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMN 63 (562)
T ss_pred EeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999998765 477988888887654 3443333233468999999998653
No 181
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=23.89 E-value=1.2e+02 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=21.6
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhcc-ccc
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVND-MEQ 104 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~-~~~ 104 (178)
.|=+-.+++.|+.+|+..|.+.+.. ||.
T Consensus 4 KFLhlt~~~~tl~~L~~eI~~~f~kLYP~ 32 (73)
T PF10407_consen 4 KFLHLTDPNNTLSQLKEEIEERFKKLYPN 32 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHCCC
Confidence 3444467899999999999999874 454
No 182
>CHL00030 rpl23 ribosomal protein L23
Probab=23.70 E-value=1.2e+02 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
..+.+.|+.+||=-|.|+||+..|..
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~V 45 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGV 45 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 46788899999999999999999863
No 183
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=23.26 E-value=2.4e+02 Score=26.37 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHhhhcCCceEEEEEccCCce-E--EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe
Q 030379 48 KPTLSDVDTLISLEMGSAMRISILKLDGTS-F--DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS 124 (178)
Q Consensus 48 ~~t~~ev~~~Iale~G~AMkLtV~k~dg~~-~--~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~ 124 (178)
...++++...|==..| -++|+.+.-.+.. | |++|...+||.|+=+.|++.+-.. .-.-.||.. ..-
T Consensus 274 ~~nld~L~e~i~~~L~-liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~---------FryA~VWGk-Svk 342 (365)
T COG1163 274 GINLDELKERIWDVLG-LIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVEN---------FRYARVWGK-SVK 342 (365)
T ss_pred CCCHHHHHHHHHHhhC-eEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHh---------cceEEEecc-CCC
Confidence 5566666666543333 3788885554443 3 899999999999999999987411 001237776 566
Q ss_pred cCCccccCCcchhhhcCCCCCCEEEEEe
Q 030379 125 HQNQKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 125 ~~g~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
|.|+++=. +|=+.|+|.|....
T Consensus 343 ~~~QrVG~------dHvLeD~DIV~I~~ 364 (365)
T COG1163 343 HPGQRVGL------DHVLEDEDIVEIHA 364 (365)
T ss_pred CCccccCc------CcCccCCCeEEEee
Confidence 77776632 45577888776543
No 184
>PRK08453 fliD flagellar capping protein; Validated
Probab=23.23 E-value=1.3e+02 Score=30.16 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=25.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHH
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
+++++ +|+.+.|.|+...|+.||..+|-.
T Consensus 131 ~~~~~---~G~~~sIdi~~gtTL~~L~~~INd 159 (673)
T PRK08453 131 LKFYT---QGKDYAIDIKAGMTLGDVAQSITD 159 (673)
T ss_pred EEEEE---CCEEEEEEeCCCCcHHHHHHHhcC
Confidence 55555 699999999999999999999994
No 185
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.21 E-value=1.4e+02 Score=21.65 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.7
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
..+.+.|+..||=.|.|+||+..|.-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~Vk 41 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVK 41 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 467889999999999999999998643
No 186
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=23.18 E-value=1.8e+02 Score=22.27 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=25.0
Q ss_pred EEEEEccCC---------ceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 67 RISILKLDG---------TSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 67 kLtV~k~dg---------~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
||.|.+-+. +.|.|.+++..||.|+=..|+...
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVLd~L~~Ik~~~ 42 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVLDALNYIKEEQ 42 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHHHHHHHHHhcc
Confidence 456666665 237899999999999999999886
No 187
>PF14268 YoaP: YoaP-like
Probab=22.59 E-value=52 Score=21.63 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=12.0
Q ss_pred ccceeEEecCCccc
Q 030379 117 VWANYCLSHQNQKL 130 (178)
Q Consensus 117 VW~~~~L~~~g~kL 130 (178)
+|.+|+|.|+|+=+
T Consensus 19 pft~yalFYnGkfi 32 (44)
T PF14268_consen 19 PFTTYALFYNGKFI 32 (44)
T ss_pred ceeEEEEEECCEEE
Confidence 78999999999744
No 188
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=22.56 E-value=1.4e+02 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCceEEEEEccCC-----ceEEEEeCCCCcHHHHHHHHHHH
Q 030379 63 GSAMRISILKLDG-----TSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 63 G~AMkLtV~k~dg-----~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
|-.|++.|.+.+. +.+.|.+.+..||.|+=..|...
T Consensus 2 ~~~~~~~I~R~~~~~~~~q~y~v~~~~~~tvLd~L~~i~~~ 42 (251)
T PRK12386 2 GYTAKFRVWRGDASGGELQDYTVEVNEGEVVLDVIHRLQAT 42 (251)
T ss_pred CcEEEEEEEcCCCCCCceEEEEEeCCCCCCHHHHHHHhccc
Confidence 5568999988776 44788888999999988877764
No 189
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=22.30 E-value=2.2e+02 Score=20.22 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHhc
Q 030379 79 DVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~ 100 (178)
++.++..+||.|+=.+|+.-+.
T Consensus 24 ~~~l~~GaTv~D~A~~IHtdi~ 45 (76)
T cd01669 24 AFLLPKGSTARDLAYAIHTDIG 45 (76)
T ss_pred eEEECCCCCHHHHHHHHHHHHH
Confidence 6888999999999999997763
No 190
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=22.18 E-value=1.4e+02 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.9
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
...+.+.|+.+||=.|.|+||+..|...
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~Vk 47 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVK 47 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCc
Confidence 3467888999999999999999998643
No 191
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=22.04 E-value=1.4e+02 Score=24.57 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=32.8
Q ss_pred HHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHH
Q 030379 56 TLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94 (178)
Q Consensus 56 ~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkA 94 (178)
....-+.|..|++..-..+|+...-++.++||-.|+-..
T Consensus 41 ~~~s~~~~~tmk~rl~~v~g~~~tatLnD~atAkdfa~l 79 (166)
T COG4925 41 NELSQEEGETMKRRLIQVNGETTTATLNDGATAKDFAEL 79 (166)
T ss_pred cccCcccCCceEEEEEeeCCEEEEEEecCChhHHHHHHh
Confidence 345567899999999899999999999999999987554
No 192
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=22.01 E-value=1.2e+02 Score=24.41 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=41.3
Q ss_pred CCceEEEEEccCCceEEEEeCCC--CcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 63 GSAMRISILKLDGTSFDVAVMNS--ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~s--ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
|---.|.|. .+.-.+.|++... .-...|+.+|...+....... -.=.+.|.-.|.+=|++-.| ..+|.+|
T Consensus 15 G~Vr~V~v~-gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv~~-V~V~i~~~p~Wt~d~it~~g------r~~l~~~ 86 (146)
T TIGR02159 15 GMVREVDVD-GGGVVVKFTPTYSGCPALEVIRQDIRDAVRALGVEV-VEVSTSLDPPWTTDWITEDA------REKLREY 86 (146)
T ss_pred CCeeEEEEE-CCEEEEEEEeCCCCCchHHHHHHHHHHHHHhcCCCe-EEEeEeeCCCCChHHCCHHH------HHHHHhc
Confidence 333345552 2223344444433 445668888888764311100 11245667777777777666 4679999
Q ss_pred CCCC
Q 030379 141 GVRN 144 (178)
Q Consensus 141 GIkd 144 (178)
||-.
T Consensus 87 giap 90 (146)
T TIGR02159 87 GIAP 90 (146)
T ss_pred CccC
Confidence 9976
No 193
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=21.87 E-value=1.8e+02 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.2
Q ss_pred ceEEEEEccCC--------ceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 65 AMRISILKLDG--------TSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 65 AMkLtV~k~dg--------~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
-|+|.|.+-|. +.+.|.+++..||.|+=..|+...
T Consensus 6 ~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 6 NLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred EEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 47899988764 336788889999999999998765
No 194
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=21.52 E-value=86 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhcCc
Q 030379 26 KARLHSTLTALLDDP 40 (178)
Q Consensus 26 ~~~~~~~l~~l~~Dp 40 (178)
...+++.+..+++||
T Consensus 18 ~~~~~~l~~~vl~dp 32 (94)
T PF07319_consen 18 EERYEQLKQEVLSDP 32 (94)
T ss_dssp HHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHcCH
Confidence 567888999999999
No 195
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=21.40 E-value=1.8e+02 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 78 FDVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 78 ~~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
+.+.|+..++..+|...|.+++++.++
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~ 35 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQ 35 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChh
Confidence 355578899999999999999987655
No 196
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=21.31 E-value=1.7e+02 Score=20.80 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=24.4
Q ss_pred eEEEEEccCCce---EEEEeCCCCcHHHHHHHHHHHh
Q 030379 66 MRISILKLDGTS---FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 66 MkLtV~k~dg~~---~~V~V~~sATV~DLKkAI~~~~ 99 (178)
|+|+-++..+.. =++.++..|||.|+=.+|...+
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 466664443322 2788899999999999999754
No 197
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=3.1e+02 Score=24.83 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCC-CcHHHHHHHHHHHh
Q 030379 49 PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNS-ATVKDLKLAIKKKV 99 (178)
Q Consensus 49 ~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~s-ATV~DLKkAI~~~~ 99 (178)
-..+.|+.-|.-+-++-+.++=..++|+.+-|+|.-+ +|..+-|.||...-
T Consensus 220 ~s~~nv~~fa~k~~l~~~~vy~t~rnG~pWYvv~~G~YatrqeA~~AvstLP 271 (292)
T COG3266 220 GSYDNVNGFAKKQNLKGYVVYETTRNGKPWYVVVYGNYATRQEAKAAVSTLP 271 (292)
T ss_pred cchHHHHHHHHhcCCCceEEeEeecCCceeEEEEecCcccHHHHHHHHhhCc
Confidence 3678899999988888899999999999998888665 99999999998763
No 198
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.16 E-value=1.5e+02 Score=21.75 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.7
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
..+.+.|+..||=.+.|+||+..|.-.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~Vk 48 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVK 48 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 467888999999999999999998644
No 199
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=20.43 E-value=49 Score=28.04 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=34.2
Q ss_pred cccccccccceeEEecCCccccCCcchh----hhcCCCCC--CEEEEEeeeecCC
Q 030379 110 RHISWKHVWANYCLSHQNQKLLDENSAL----QDCGVRNN--SQVQFVPFVLSKG 158 (178)
Q Consensus 110 ~~ISW~~VW~~~~L~~~g~kLldD~~tL----~dyGIkdg--d~L~F~~rl~~~~ 158 (178)
.++-|.-||.+=|-.+-......-++.. .++||+.. |.+.|.+|..|+-
T Consensus 55 ~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA 109 (185)
T COG1443 55 SKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRA 109 (185)
T ss_pred hcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEec
Confidence 6899999999877665542222222222 26799998 8899999998763
No 200
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=20.19 E-value=2.3e+02 Score=22.11 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhcCccc-----------cCCCCCCCHHHHHHHHhhhc
Q 030379 25 KKARLHSTLTALLDDPIL-----------ADVPKKPTLSDVDTLISLEM 62 (178)
Q Consensus 25 ~~~~~~~~l~~l~~Dp~L-----------~dlp~~~t~~ev~~~Iale~ 62 (178)
++....+.|..+++++.+ .|+|...+.+|+...+.++.
T Consensus 96 ~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~ 144 (175)
T PF00025_consen 96 RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK 144 (175)
T ss_dssp GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG
T ss_pred eecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh
Confidence 455566677777766554 46777889999999888776
No 201
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=20.13 E-value=1.7e+02 Score=21.12 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=16.6
Q ss_pred EEEeCC-CCcHHHHHHHHHHHhc
Q 030379 79 DVAVMN-SATVKDLKLAIKKKVN 100 (178)
Q Consensus 79 ~V~V~~-sATV~DLKkAI~~~~~ 100 (178)
.|.++- ..||.|||++|..+..
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~ 35 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKK 35 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEECCCeeEHHHHHHHHHHHhC
Confidence 455544 4899999999987754
Done!