Query 030379
Match_columns 178
No_of_seqs 139 out of 194
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2y_A 3300001G02RIK protein; 100.0 3.3E-32 1.1E-36 205.6 9.1 97 62-158 4-100 (105)
2 3mtn_B UBA80, ubcep1, ubiquiti 99.6 1.1E-14 3.7E-19 101.1 9.7 78 63-156 1-78 (85)
3 3v6c_B Ubiquitin; structural g 99.6 1.3E-14 4.5E-19 103.7 9.9 79 61-155 13-91 (91)
4 3phx_B Ubiquitin-like protein 99.6 1.9E-14 6.4E-19 99.7 10.3 76 64-155 3-78 (79)
5 3n3k_B Ubiquitin; hydrolase, p 99.6 7.4E-15 2.5E-19 102.2 8.2 78 63-156 1-78 (85)
6 3dbh_I NEDD8; cell cycle, acti 99.6 2.2E-14 7.6E-19 100.5 9.4 78 62-155 9-86 (88)
7 4hcn_B Polyubiquitin, ubiquiti 99.5 2.1E-14 7E-19 104.5 8.8 80 60-155 17-96 (98)
8 1ndd_A NEDD8, protein (ubiquit 99.5 3.7E-14 1.3E-18 96.1 9.3 74 66-155 1-74 (76)
9 3a9j_A Ubiquitin; protein comp 99.5 4.4E-14 1.5E-18 95.7 9.3 74 66-155 1-74 (76)
10 4fbj_B NEDD8; effector-HOST ta 99.5 3.1E-14 1.1E-18 101.7 8.8 76 66-157 1-76 (88)
11 2kk8_A Uncharacterized protein 99.5 7.3E-14 2.5E-18 99.8 9.4 77 62-153 7-83 (84)
12 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 7.9E-14 2.7E-18 99.7 9.3 77 65-157 1-77 (96)
13 2dzi_A Ubiquitin-like protein 99.5 8.1E-14 2.8E-18 96.1 8.6 75 64-154 6-80 (81)
14 4eew_A Large proline-rich prot 99.5 1.2E-13 4.1E-18 97.6 9.4 77 60-153 12-88 (88)
15 1sif_A Ubiquitin; hydrophobic 99.5 1.2E-13 4.1E-18 98.6 8.9 78 63-156 7-84 (88)
16 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 1.7E-13 5.7E-18 96.2 9.1 77 64-156 6-82 (87)
17 3vdz_A Ubiquitin-40S ribosomal 99.5 8.4E-14 2.9E-18 103.9 7.6 77 63-155 33-109 (111)
18 2bwf_A Ubiquitin-like protein 99.5 3.3E-13 1.1E-17 92.2 9.7 72 65-153 4-75 (77)
19 2faz_A Ubiquitin-like containi 99.5 2.7E-13 9.4E-18 93.4 9.3 74 65-154 2-77 (78)
20 2hj8_A Interferon-induced 17 k 99.5 1.9E-13 6.5E-18 97.4 8.7 79 64-158 3-81 (88)
21 2uyz_B Small ubiquitin-related 99.5 2.2E-13 7.5E-18 94.3 8.6 76 64-155 2-77 (79)
22 2wyq_A HHR23A, UV excision rep 99.5 4.1E-13 1.4E-17 93.7 9.9 73 65-153 5-80 (85)
23 1yx5_B Ubiquitin; proteasome, 99.4 4.7E-13 1.6E-17 96.7 9.3 74 66-155 1-74 (98)
24 4dwf_A HLA-B-associated transc 99.4 5.4E-13 1.8E-17 94.5 9.5 76 64-156 4-79 (90)
25 1wy8_A NP95-like ring finger p 99.4 5.7E-13 1.9E-17 94.1 9.5 77 64-156 6-84 (89)
26 3b1l_X E3 ubiquitin-protein li 99.2 1E-14 3.4E-19 100.0 0.0 75 66-156 1-75 (76)
27 1uel_A HHR23B, UV excision rep 99.4 1.2E-12 3.9E-17 94.7 10.4 76 66-157 1-79 (95)
28 1uh6_A Ubiquitin-like 5; beta- 99.4 6.6E-13 2.2E-17 99.4 8.9 70 66-151 29-98 (100)
29 3m62_B UV excision repair prot 99.4 4E-13 1.4E-17 99.5 7.5 73 66-154 2-74 (106)
30 3b08_A Polyubiquitin-C, ubiqui 99.4 2.3E-12 8E-17 97.6 11.7 76 64-155 75-150 (152)
31 2ojr_A Ubiquitin; lanthide-bin 99.4 1.2E-12 4.1E-17 97.4 9.6 76 64-155 34-109 (111)
32 1yqb_A Ubiquilin 3; structural 99.4 1.5E-12 5E-17 95.7 9.5 77 64-157 21-97 (100)
33 1wyw_B Ubiquitin-like protein 99.4 1.2E-12 4E-17 95.3 8.8 79 61-155 17-95 (97)
34 2kan_A Uncharacterized protein 99.4 1.5E-12 5.1E-17 94.7 9.3 78 62-156 12-90 (94)
35 2l7r_A Ubiquitin-like protein 99.4 1.1E-12 3.8E-17 94.7 8.5 76 62-155 16-91 (93)
36 1v5o_A 1700011N24RIK protein; 99.4 1.1E-12 3.8E-17 96.2 8.6 77 65-156 7-87 (102)
37 1ttn_A DC-UBP, dendritic cell- 99.4 1.3E-12 4.6E-17 96.4 9.0 79 61-155 19-97 (106)
38 2klc_A Ubiquilin-1; ubiquitin- 99.4 2.4E-12 8E-17 94.6 10.0 77 63-156 23-99 (101)
39 1wgd_A Homocysteine-responsive 99.4 1.3E-12 4.3E-17 93.8 8.2 77 64-156 6-88 (93)
40 1wia_A Hypothetical ubiquitin- 99.4 1.2E-12 3.9E-17 94.2 7.7 73 64-154 6-78 (95)
41 1wx8_A Riken cDNA 4931431F19; 99.4 9.7E-13 3.3E-17 94.6 6.9 76 64-156 16-91 (96)
42 3rt3_B Ubiquitin-like protein 99.4 3.3E-12 1.1E-16 98.8 10.3 97 45-157 54-157 (159)
43 4a20_A Ubiquitin-like protein 99.4 3.1E-12 1.1E-16 94.7 8.8 74 63-152 17-94 (98)
44 1we6_A Splicing factor, putati 99.3 6.3E-12 2.2E-16 93.3 9.7 78 63-156 25-106 (111)
45 1wx7_A Ubiquilin 3; ubiquitin- 99.3 4E-12 1.4E-16 93.5 8.5 77 64-157 16-92 (106)
46 3l0w_B Monoubiquitinated proli 99.3 4.1E-12 1.4E-16 101.5 9.1 75 66-156 1-75 (169)
47 1j8c_A Ubiquitin-like protein 99.3 5.8E-12 2E-16 96.3 9.3 77 63-156 30-106 (125)
48 2daf_A FLJ35834 protein; hypot 99.3 5.4E-12 1.8E-16 97.3 8.5 74 65-154 15-89 (118)
49 2dzj_A Synaptic glycoprotein S 99.3 2.9E-12 1E-16 92.6 6.6 70 66-151 11-86 (88)
50 3m63_B Ubiquitin domain-contai 99.3 1.2E-12 4.2E-17 96.4 4.6 77 60-153 23-99 (101)
51 3b08_A Polyubiquitin-C, ubiqui 99.3 8.6E-12 3E-16 94.4 9.2 73 66-154 1-73 (152)
52 1wxv_A BAG-family molecular ch 99.3 8.7E-12 3E-16 89.1 8.6 75 64-154 6-85 (92)
53 1wju_A NEDD8 ultimate buster-1 99.3 6.3E-12 2.1E-16 94.1 8.1 73 67-156 17-93 (100)
54 3u30_A Ubiquitin, linear DI-ub 99.3 1.2E-11 4E-16 97.3 10.0 76 64-155 95-170 (172)
55 3plu_A Ubiquitin-like modifier 99.3 1.2E-11 4.3E-16 91.7 9.2 72 64-151 20-91 (93)
56 3rt3_B Ubiquitin-like protein 99.3 1.1E-11 3.8E-16 95.8 9.3 73 65-153 2-76 (159)
57 2kdi_A Ubiquitin, vacuolar pro 99.3 1.6E-11 5.5E-16 92.1 9.4 77 64-156 8-84 (114)
58 3u30_A Ubiquitin, linear DI-ub 99.3 1.9E-11 6.4E-16 96.2 10.1 78 62-155 17-94 (172)
59 3q3f_A Ribonuclease/ubiquitin 99.3 1.1E-11 3.9E-16 101.5 9.1 75 66-156 106-180 (189)
60 3u5e_m 60S ribosomal protein L 99.3 3.6E-13 1.2E-17 102.6 0.0 75 66-156 1-75 (128)
61 2kd0_A LRR repeats and ubiquit 99.3 1.8E-11 6.3E-16 87.1 8.9 72 65-152 11-82 (85)
62 1v5t_A 8430435I17RIK protein; 99.3 9.9E-12 3.4E-16 89.2 6.9 72 64-152 6-81 (90)
63 2gow_A HCG-1 protein, ubiquiti 99.3 3.1E-11 1.1E-15 93.1 10.2 86 62-156 14-102 (125)
64 1wf9_A NPL4 family protein; be 99.3 1.4E-11 5E-16 91.3 7.8 74 64-153 6-94 (107)
65 1v86_A DNA segment, CHR 7, way 99.3 1.7E-11 5.7E-16 89.1 7.9 72 64-153 16-87 (95)
66 2lxa_A Ubiquitin-like protein 99.3 7.3E-12 2.5E-16 90.8 5.9 72 66-153 2-77 (87)
67 3u5c_f 40S ribosomal protein S 99.2 7.2E-13 2.5E-17 105.1 0.3 77 66-158 1-77 (152)
68 1x1m_A Ubiquitin-like protein 99.2 1.6E-11 5.6E-16 90.8 7.3 76 65-155 12-101 (107)
69 1we7_A SF3A1 protein; structur 99.2 3.5E-11 1.2E-15 89.9 9.1 77 64-156 24-110 (115)
70 1wgh_A Ubiquitin-like 3, HCG-1 99.2 4.6E-11 1.6E-15 91.2 9.8 93 64-165 15-110 (116)
71 2kdb_A Homocysteine-responsive 99.2 3.1E-11 1.1E-15 89.3 7.1 73 64-151 22-99 (99)
72 1wgg_A Ubiquitin carboxyl-term 99.2 3.2E-11 1.1E-15 88.0 6.9 72 64-153 6-78 (96)
73 4dbg_A Ranbp-type and C3HC4-ty 99.2 1.6E-10 5.4E-15 87.2 9.4 71 66-152 25-98 (105)
74 3ai5_A Yeast enhanced green fl 99.1 1.4E-10 4.7E-15 101.4 9.4 78 62-155 230-307 (307)
75 2kzr_A Ubiquitin thioesterase 99.1 6.1E-11 2.1E-15 84.3 5.1 72 66-153 1-77 (86)
76 1se9_A Ubiquitin family; ubiqu 99.1 5.1E-10 1.7E-14 86.9 8.4 88 61-157 12-106 (126)
77 1v6e_A Cytoskeleton-associated 99.0 5.2E-10 1.8E-14 80.9 7.6 72 66-152 8-86 (95)
78 2kjr_A CG11242; UBL, ubiquitin 99.0 8.7E-10 3E-14 80.9 8.6 72 66-152 16-94 (95)
79 1oqy_A HHR23A, UV excision rep 99.0 5.2E-10 1.8E-14 99.7 7.0 77 64-156 6-86 (368)
80 2kj6_A Tubulin folding cofacto 99.0 2E-09 6.7E-14 79.4 8.8 75 63-152 11-94 (97)
81 4ajy_B Transcription elongatio 99.0 1.1E-09 3.7E-14 84.3 7.7 72 66-154 3-81 (118)
82 2dzm_A FAS-associated factor 1 99.0 1.2E-09 4.3E-14 81.1 7.6 72 66-153 9-81 (100)
83 2fnj_B Transcription elongatio 99.0 2.3E-09 8E-14 82.3 8.8 72 65-153 2-80 (118)
84 1t0y_A Tubulin folding cofacto 98.9 2.1E-09 7.2E-14 81.4 8.0 73 65-152 6-85 (122)
85 4b6w_A Tubulin-specific chaper 98.9 3.9E-09 1.3E-13 76.0 7.7 72 66-153 3-83 (86)
86 3shq_A UBLCP1; phosphatase, hy 98.9 3.1E-09 1E-13 92.8 8.3 73 63-152 3-78 (320)
87 2io1_B Small ubiquitin-related 98.9 1.1E-08 3.8E-13 74.8 8.9 80 62-157 4-83 (94)
88 1wjn_A Tubulin-folding protein 98.8 1.7E-08 5.7E-13 73.0 7.7 72 66-152 10-91 (97)
89 2io0_B Small ubiquitin-related 98.8 3.2E-08 1.1E-12 72.1 9.0 80 63-158 3-82 (91)
90 1wm3_A Ubiquitin-like protein 98.7 5E-08 1.7E-12 67.4 7.9 70 66-151 2-71 (72)
91 2d07_B Ubiquitin-like protein 98.7 7.7E-08 2.6E-12 70.0 9.2 79 61-155 13-91 (93)
92 3a4r_A Nfatc2-interacting prot 98.7 1.3E-07 4.3E-12 66.7 9.3 74 62-151 4-78 (79)
93 2xzm_9 RPS31E; ribosome, trans 98.7 3.4E-09 1.2E-13 87.2 0.8 70 66-156 1-70 (189)
94 1wz0_A Ubiquitin-like protein 98.6 1.5E-07 5.2E-12 70.2 8.6 79 62-156 21-99 (104)
95 2k8h_A Small ubiquitin protein 98.6 1.7E-07 5.8E-12 70.8 7.7 79 62-156 23-101 (110)
96 2eke_C Ubiquitin-like protein 98.5 5.6E-07 1.9E-11 67.6 8.5 78 61-155 27-104 (106)
97 2pjh_A Protein NPL4, nuclear p 98.4 3.2E-07 1.1E-11 65.1 4.1 75 64-152 3-79 (80)
98 2bps_A YUKD protein; ubiquitin 98.2 7.4E-06 2.5E-10 59.1 8.1 77 62-149 1-79 (81)
99 3kyd_D Small ubiquitin-related 98.1 9.9E-06 3.4E-10 61.8 8.7 96 39-153 17-112 (115)
100 3goe_A DNA repair protein RAD6 97.8 0.00011 3.8E-09 53.2 8.8 74 63-151 7-80 (82)
101 3pge_A SUMO-modified prolifera 97.8 9.9E-05 3.4E-09 61.0 8.8 79 61-156 25-103 (200)
102 3tix_A Ubiquitin-like protein 97.6 0.00013 4.4E-09 60.8 7.2 79 61-156 53-131 (207)
103 2jxx_A Nfatc2-interacting prot 97.4 0.00088 3E-08 49.4 8.5 75 60-150 20-95 (97)
104 2al3_A TUG long isoform; TUG U 97.3 0.00093 3.2E-08 49.1 7.3 81 59-155 3-83 (90)
105 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.0022 7.5E-08 49.7 7.9 87 67-153 13-122 (128)
106 3v7o_A Minor nucleoprotein VP3 97.0 9.3E-05 3.2E-09 62.4 0.0 78 61-155 17-94 (227)
107 2l76_A Nfatc2-interacting prot 95.9 0.11 3.7E-06 38.4 10.3 75 60-151 16-90 (95)
108 3qx1_A FAS-associated factor 1 95.8 0.066 2.3E-06 37.3 8.6 72 64-151 6-81 (84)
109 3uf8_A Ubiquitin-like protein 95.8 0.035 1.2E-06 45.2 8.0 77 61-154 17-93 (209)
110 3ix6_A TS, tsase, thymidylate 95.6 0.002 6.7E-08 57.5 0.0 77 62-155 18-94 (360)
111 2dzk_A UBX domain-containing p 95.1 0.14 5E-06 37.6 8.7 74 65-153 13-90 (109)
112 4da1_A Protein phosphatase 1K, 95.0 0.0042 1.4E-07 54.3 0.0 78 61-155 26-103 (389)
113 2cr5_A Reproduction 8; UBX dom 94.8 0.23 8E-06 36.4 9.1 88 43-155 10-100 (109)
114 3ivf_A Talin-1; FERM domain, c 94.7 0.2 6.8E-06 43.1 9.9 78 65-154 3-85 (371)
115 4e71_A Plexin-B2, MM1; transme 94.4 0.24 8.1E-06 37.5 8.5 84 64-154 10-111 (111)
116 1s3s_G P47 protein; AAA ATPase 94.4 0.2 6.7E-06 37.9 8.1 76 58-147 44-122 (127)
117 1vjk_A Molybdopterin convertin 94.0 0.29 1E-05 34.8 7.9 79 63-154 7-95 (98)
118 1wj4_A KIAA0794 protein; UBX d 94.0 0.3 1E-05 36.8 8.4 75 63-153 41-119 (124)
119 4a3p_A Ubiquitin carboxyl-term 93.8 0.22 7.4E-06 40.6 7.7 80 66-154 128-209 (217)
120 2r2o_A Plexin-B1; effector dom 93.7 0.37 1.3E-05 37.7 8.6 94 64-157 23-132 (138)
121 2qjl_A URM1, ubiquitin-related 92.1 0.9 3.1E-05 32.3 8.2 68 76-154 20-96 (99)
122 3jyu_A Ubiquitin carboxyl-term 92.1 0.61 2.1E-05 38.3 8.2 64 79-154 155-221 (231)
123 1h4r_A Merlin; FERM, neurofibr 91.9 0.95 3.2E-05 37.8 9.3 80 60-154 17-99 (314)
124 4e74_A Plexin-A4; RBD, structu 91.6 0.97 3.3E-05 34.4 8.2 91 64-154 12-115 (117)
125 1ryj_A Unknown; beta/alpha pro 91.1 1.2 4.1E-05 29.8 7.5 64 65-154 4-67 (70)
126 3po0_A Small archaeal modifier 90.6 0.62 2.1E-05 32.1 5.8 67 76-155 18-87 (89)
127 3h6n_A Plexin-D1; structural g 90.3 3 0.0001 32.1 9.9 92 65-156 4-107 (127)
128 1tyg_B YJBS; alpha beta barrel 89.8 0.69 2.4E-05 33.0 5.6 65 64-154 19-84 (87)
129 3qij_A Protein 4.1; cytoskelet 89.4 1.2 4.2E-05 37.3 7.8 79 62-154 14-96 (296)
130 2daj_A KIAA0977 protein, COBL- 88.5 1.2 4.3E-05 32.5 6.2 73 64-154 9-83 (91)
131 3ivf_A Talin-1; FERM domain, c 88.5 3.1 0.00011 35.6 9.8 91 50-154 67-168 (371)
132 1f0z_A THis protein; ubiquitin 88.4 0.8 2.7E-05 30.2 4.8 64 66-155 1-64 (66)
133 1ef1_A Moesin; membrane, FERM 88.3 2.7 9.3E-05 34.5 9.1 76 65-155 1-80 (294)
134 2ns5_A Partitioning-defective 88.2 2.4 8E-05 30.6 7.5 76 64-149 1-78 (85)
135 1wgk_A Riken cDNA 2900073H19 p 88.0 1.9 6.5E-05 32.0 7.1 81 64-155 10-106 (114)
136 2i1j_A Moesin; FERM, coiled-co 87.5 2.4 8.4E-05 39.2 9.1 80 63-157 2-85 (575)
137 3dwg_C 9.5 kDa culture filtrat 86.9 0.94 3.2E-05 31.5 4.7 67 79-155 20-91 (93)
138 2d9p_A Polyadenylate-binding p 86.6 1.8 6.2E-05 29.6 6.0 58 41-99 19-76 (103)
139 3kuz_A Plexin-C1; structural g 85.9 4.4 0.00015 31.2 8.3 89 64-152 18-125 (126)
140 2dgv_A HnRNP M, heterogeneous 85.1 3.5 0.00012 27.3 6.7 58 41-99 12-69 (92)
141 3rpf_C Molybdopterin convertin 85.0 2.3 7.8E-05 28.5 5.7 57 80-155 16-72 (74)
142 3bs9_A Nucleolysin TIA-1 isofo 84.0 4.3 0.00015 26.5 6.7 57 42-99 11-69 (87)
143 3hm6_X Plexin-B1; structural g 82.4 4.9 0.00017 38.3 8.6 94 64-157 256-365 (644)
144 2dhg_A TRNA selenocysteine ass 82.0 5.4 0.00018 27.1 6.8 58 41-98 13-71 (104)
145 2dgo_A Cytotoxic granule-assoc 81.7 5.2 0.00018 27.8 6.7 58 41-99 19-78 (115)
146 2l52_A Methanosarcina acetivor 81.2 3.5 0.00012 29.3 5.7 82 64-155 2-97 (99)
147 2q5w_D Molybdopterin convertin 80.3 2 6.9E-05 28.5 4.0 59 76-154 16-74 (77)
148 2cpz_A CUG triplet repeat RNA- 80.3 5.9 0.0002 27.5 6.6 58 41-99 29-88 (115)
149 3au4_A Myosin-X; protein-prote 79.9 4.8 0.00016 36.4 7.4 52 48-102 202-253 (555)
150 3ig3_A Plxna3 protein; plexin 79.5 11 0.00039 35.8 10.0 93 63-155 231-336 (627)
151 1vd2_A Protein kinase C, IOTA 78.9 4.4 0.00015 29.1 5.6 79 63-148 4-82 (89)
152 4fxv_A ELAV-like protein 1; RN 78.5 7.3 0.00025 26.9 6.6 58 41-99 23-82 (99)
153 4f25_A Polyadenylate-binding p 78.5 6.7 0.00023 27.6 6.5 58 41-99 9-66 (115)
154 2do4_A Squamous cell carcinoma 78.2 7.2 0.00025 26.3 6.4 58 41-99 21-79 (100)
155 3pvl_A Myosin VIIA isoform 1; 77.5 5.4 0.00019 37.5 7.3 52 48-102 249-300 (655)
156 2do0_A HnRNP M, heterogeneous 77.2 7.8 0.00027 26.7 6.4 58 41-99 19-77 (114)
157 2cpf_A RNA binding motif prote 77.2 6.6 0.00023 26.3 5.9 57 41-98 9-70 (98)
158 2cq0_A Eukaryotic translation 76.5 6.2 0.00021 26.8 5.7 57 41-98 19-77 (103)
159 3ulh_A THO complex subunit 4; 76.3 9.3 0.00032 26.0 6.6 58 41-99 33-91 (107)
160 2kl0_A Putative thiamin biosyn 76.1 4.4 0.00015 27.6 4.7 63 66-155 1-63 (73)
161 2k5p_A THis protein, thiamine- 75.5 2.3 7.8E-05 29.4 3.1 66 66-155 1-67 (78)
162 1y8x_B Ubiquitin-activating en 75.3 2.5 8.4E-05 30.9 3.4 69 77-151 6-82 (98)
163 2l32_A Small archaeal modifier 75.0 3.2 0.00011 28.4 3.8 64 66-156 1-65 (74)
164 2dnh_A Bruno-like 5, RNA bindi 74.4 10 0.00035 25.6 6.4 58 41-99 19-77 (105)
165 2g1e_A Hypothetical protein TA 74.4 5.6 0.00019 26.9 4.9 65 80-154 19-87 (90)
166 4a6q_A Histone deacetylase com 74.3 24 0.00082 27.5 9.1 74 77-152 55-137 (143)
167 1fm0_D Molybdopterin convertin 74.2 5.3 0.00018 26.5 4.7 61 77-155 18-79 (81)
168 2k9x_A Tburm1, uncharacterized 74.0 1.9 6.5E-05 31.9 2.5 81 65-156 4-101 (110)
169 1p1t_A Cleavage stimulation fa 73.4 11 0.00039 25.3 6.3 58 41-99 12-71 (104)
170 2cq3_A RNA-binding protein 9; 73.3 7.3 0.00025 26.4 5.4 56 41-99 19-76 (103)
171 4efo_A Serine/threonine-protei 73.2 5.9 0.0002 28.8 5.0 52 75-141 23-75 (94)
172 2fc8_A NCL protein; structure 73.2 8.6 0.00029 25.9 5.7 57 41-99 19-75 (102)
173 1oey_A P67-PHOX, neutrophil cy 72.9 11 0.00037 26.8 6.2 37 65-103 5-41 (83)
174 3md1_A Nuclear and cytoplasmic 72.9 14 0.00049 23.6 6.5 57 42-99 6-64 (83)
175 2cu3_A Unknown function protei 72.9 10 0.00035 24.5 5.8 58 74-155 5-62 (64)
176 2kmm_A Guanosine-3',5'-BIS(dip 72.6 14 0.00049 23.8 6.5 64 66-154 1-64 (73)
177 2div_A TRNA selenocysteine ass 71.4 17 0.00058 24.2 6.8 58 41-99 13-73 (99)
178 2la6_A RNA-binding protein FUS 70.4 16 0.00055 24.5 6.6 57 42-99 18-84 (99)
179 1h2v_Z 20 kDa nuclear CAP bind 69.3 15 0.00052 26.8 6.7 57 41-98 43-101 (156)
180 3p5t_L Cleavage and polyadenyl 69.1 18 0.00063 23.9 6.6 57 42-99 6-66 (90)
181 3ucg_A Polyadenylate-binding p 69.0 8.8 0.0003 25.0 4.8 52 41-95 10-65 (89)
182 1x4e_A RNA binding motif, sing 68.8 7.6 0.00026 25.3 4.5 55 42-99 10-68 (85)
183 1x4c_A Splicing factor, argini 68.7 17 0.00057 25.0 6.4 52 41-98 19-70 (108)
184 1ip9_A BEM1 protein; ubiquitin 68.5 10 0.00035 27.3 5.3 37 64-101 11-47 (85)
185 2dnz_A Probable RNA-binding pr 68.4 11 0.00037 24.9 5.3 56 41-99 9-68 (95)
186 2cqc_A Arginine/serine-rich sp 66.6 21 0.00072 23.4 6.4 58 41-99 19-78 (95)
187 2e5g_A U6 snRNA-specific termi 66.4 17 0.00058 24.2 6.0 52 41-96 12-63 (94)
188 2cph_A RNA binding motif prote 66.4 7.9 0.00027 26.3 4.3 55 41-98 19-78 (107)
189 1fxl_A Paraneoplastic encephal 66.3 20 0.00067 25.4 6.6 57 42-99 7-65 (167)
190 1whw_A Hypothetical protein ri 65.9 9.2 0.00031 25.6 4.5 56 41-99 12-71 (99)
191 1x5s_A Cold-inducible RNA-bind 65.9 11 0.00037 25.4 4.9 56 41-99 16-75 (102)
192 3r27_A HnRNP L, heterogeneous 65.5 25 0.00087 25.1 7.0 54 41-99 25-78 (100)
193 3onh_A Ubiquitin-activating en 65.1 11 0.00037 29.0 5.1 60 85-152 19-78 (127)
194 3ex7_B RNA-binding protein 8A; 64.0 7.8 0.00027 27.3 4.0 56 41-99 26-85 (126)
195 1q1o_A Cell division control p 63.7 16 0.00055 26.8 5.7 39 64-102 4-49 (98)
196 2fy1_A RNA-binding motif prote 63.7 16 0.00054 25.7 5.6 55 41-98 11-68 (116)
197 2x1f_A MRNA 3'-END-processing 63.7 11 0.00039 25.1 4.6 55 42-99 7-65 (96)
198 2cqd_A RNA-binding region cont 63.2 9.1 0.00031 26.5 4.2 55 41-98 21-79 (116)
199 2cqi_A Nucleolysin TIAR; RNA r 63.1 16 0.00054 24.7 5.3 56 41-99 19-76 (103)
200 2ywk_A Putative RNA-binding pr 63.0 24 0.00081 23.2 6.2 58 41-99 20-78 (95)
201 2dh8_A DAZ-associated protein 62.8 22 0.00074 24.0 6.0 56 41-97 20-77 (105)
202 1l3k_A Heterogeneous nuclear r 62.6 23 0.00079 26.0 6.6 54 41-97 17-74 (196)
203 2cqg_A TDP-43, TAR DNA-binding 62.0 28 0.00095 23.4 6.4 56 41-97 19-76 (103)
204 1l3k_A Heterogeneous nuclear r 61.7 22 0.00076 26.1 6.3 56 41-97 108-165 (196)
205 1p9y_A Trigger factor, TF; alp 61.5 9.6 0.00033 28.0 4.2 34 63-100 1-36 (121)
206 1rk8_A CG8781-PA, CG8781-PA pr 61.0 26 0.00089 26.0 6.6 57 41-98 76-134 (165)
207 3nmr_A Cugbp ELAV-like family 60.7 29 0.00098 24.8 6.7 59 41-100 99-158 (175)
208 1x4a_A Splicing factor, argini 60.3 13 0.00046 25.4 4.6 55 41-99 26-82 (109)
209 2mss_A Protein (musashi1); RNA 60.3 10 0.00036 24.0 3.8 52 42-96 4-59 (75)
210 2kxn_B Transformer-2 protein h 60.3 18 0.00062 26.1 5.5 56 41-99 50-109 (129)
211 3mdf_A Peptidyl-prolyl CIS-tra 60.0 16 0.00056 23.5 4.8 58 41-99 11-70 (85)
212 2i1s_A Hypothetical protein; m 59.3 47 0.0016 25.9 8.2 22 79-100 25-46 (188)
213 3s7r_A Heterogeneous nuclear r 58.8 29 0.00098 22.5 5.9 56 41-97 15-72 (87)
214 2g4b_A Splicing factor U2AF 65 58.5 21 0.00072 25.6 5.6 58 41-99 98-157 (172)
215 1x4h_A RNA-binding protein 28; 58.5 15 0.00052 24.9 4.6 56 41-99 19-78 (111)
216 2dgw_A Probable RNA-binding pr 58.4 31 0.001 22.6 6.0 54 41-96 14-68 (91)
217 2ek1_A RNA-binding protein 12; 58.1 22 0.00074 23.4 5.2 58 41-99 19-78 (95)
218 2pmv_A Gastric intrinsic facto 57.7 27 0.00092 31.3 7.2 69 78-151 315-395 (399)
219 2hvz_A Splicing factor, argini 57.7 36 0.0012 22.7 6.4 54 42-99 5-58 (101)
220 3u7z_A Putative metal binding 57.6 46 0.0016 24.2 7.3 82 64-152 7-97 (101)
221 2jwn_A Embryonic polyadenylate 57.4 19 0.00063 25.1 5.0 54 41-95 40-95 (124)
222 1x5u_A Splicing factor 3B subu 57.3 13 0.00045 25.1 4.1 55 41-98 19-77 (105)
223 1t3q_A Quinoline 2-oxidoreduct 56.8 13 0.00043 28.9 4.3 31 63-94 7-37 (168)
224 3beg_B Splicing factor, argini 56.6 20 0.00068 25.1 5.1 53 41-99 20-72 (115)
225 2dnp_A RNA-binding protein 14; 56.3 30 0.001 22.6 5.7 52 41-99 13-64 (90)
226 3md3_A Nuclear and cytoplasmic 56.2 18 0.00062 25.5 4.9 57 42-99 5-62 (166)
227 2cqp_A RNA-binding protein 12; 56.2 24 0.0008 23.4 5.2 58 41-99 19-78 (98)
228 2err_A Ataxin-2-binding protei 56.2 10 0.00035 26.3 3.4 55 42-99 34-90 (109)
229 2v1y_A Phosphatidylinositol-4, 55.8 29 0.00098 25.8 5.9 86 62-153 16-104 (108)
230 1x5t_A Splicing factor 3B subu 55.7 12 0.0004 24.8 3.5 55 41-98 9-68 (96)
231 1uaw_A Mouse-musashi-1; RNP-ty 55.4 12 0.00041 23.6 3.4 54 42-98 5-62 (77)
232 1x4g_A Nucleolysin TIAR; struc 55.3 37 0.0013 23.1 6.2 54 41-99 29-82 (109)
233 1why_A Hypothetical protein ri 55.1 39 0.0013 22.4 6.2 54 41-99 21-74 (97)
234 1whx_A Hypothetical protein ri 54.6 28 0.00095 24.2 5.5 54 41-99 14-67 (111)
235 1wez_A HnRNP H', FTP-3, hetero 54.3 17 0.00057 25.1 4.3 54 41-96 19-73 (102)
236 2jrs_A RNA-binding protein 39; 54.0 39 0.0013 23.3 6.3 58 41-99 30-89 (108)
237 2jrh_A Mitogen-activated prote 54.0 35 0.0012 24.9 5.9 48 45-98 20-67 (94)
238 3n9u_C Cleavage and polyadenyl 53.6 41 0.0014 25.2 6.7 55 41-98 59-119 (156)
239 3s8s_A Histone-lysine N-methyl 53.2 44 0.0015 23.4 6.4 57 42-99 11-69 (110)
240 4f02_A Polyadenylate-binding p 53.2 36 0.0012 26.0 6.5 58 41-99 107-164 (213)
241 2zpm_A Regulator of sigma E pr 52.9 29 0.00098 22.9 5.2 34 50-84 38-71 (91)
242 3lqv_A PRE-mRNA branch site pr 52.6 16 0.00054 25.2 3.9 56 41-99 12-68 (115)
243 2kn4_A Immunoglobulin G-bindin 52.5 17 0.00059 26.4 4.3 54 42-98 75-132 (158)
244 2cqb_A Peptidyl-prolyl CIS-tra 52.3 18 0.00062 24.2 4.1 57 41-98 16-74 (102)
245 1wi8_A EIF-4B, eukaryotic tran 52.1 12 0.00041 25.4 3.1 51 41-95 19-74 (104)
246 2dgs_A DAZ-associated protein 52.1 21 0.00071 23.9 4.4 53 41-96 14-70 (99)
247 2dnm_A SRP46 splicing factor; 51.9 8.9 0.0003 26.0 2.4 55 41-98 17-75 (103)
248 3pgw_S U1-70K; protein-RNA com 51.2 26 0.00087 31.0 5.9 58 41-99 106-165 (437)
249 2lxi_A RNA-binding protein 10; 50.9 6.7 0.00023 26.6 1.6 56 41-99 5-65 (91)
250 1fxl_A Paraneoplastic encephal 50.7 61 0.0021 22.7 7.6 59 41-100 92-152 (167)
251 2qfj_A FBP-interacting repress 50.6 45 0.0016 24.7 6.5 58 41-99 129-188 (216)
252 1b7f_A Protein (SXL-lethal pro 50.5 47 0.0016 23.5 6.4 58 42-100 94-153 (168)
253 1x4b_A Heterogeneous nuclear r 50.3 25 0.00085 24.2 4.6 54 41-97 31-88 (116)
254 1x5o_A RNA binding motif, sing 50.2 43 0.0015 22.8 5.9 58 41-99 29-87 (114)
255 2dgp_A Bruno-like 4, RNA bindi 50.1 19 0.00065 24.3 4.0 56 41-99 17-76 (106)
256 2bb6_A TCII, TC II, transcobal 50.0 59 0.002 29.2 8.1 83 66-151 319-410 (414)
257 2krb_A Eukaryotic translation 49.9 15 0.00052 23.7 3.3 56 42-98 6-67 (81)
258 1s79_A Lupus LA protein; RRM, 49.4 35 0.0012 23.7 5.3 53 41-96 15-70 (103)
259 1u6f_A Tcubp1, RNA-binding pro 49.0 48 0.0016 23.4 6.2 57 41-98 46-104 (139)
260 1j0g_A Hypothetical protein 18 48.9 63 0.0022 23.3 6.5 75 66-155 13-88 (92)
261 2c60_A Human mitogen-activated 48.2 40 0.0014 25.2 5.6 48 45-98 47-94 (111)
262 2dgt_A RNA-binding protein 30; 48.2 53 0.0018 21.5 5.9 52 41-99 14-65 (92)
263 2rs2_A Musashi-1, RNA-binding 47.9 19 0.00064 25.0 3.7 54 41-97 29-86 (109)
264 2dng_A Eukaryotic translation 47.5 39 0.0013 22.7 5.2 53 41-95 19-73 (103)
265 3md3_A Nuclear and cytoplasmic 47.2 62 0.0021 22.6 6.5 58 41-99 91-150 (166)
266 2ku7_A MLL1 PHD3-CYP33 RRM chi 47.1 28 0.00096 24.4 4.6 54 42-98 68-125 (140)
267 2zjd_A Microtubule-associated 47.1 72 0.0025 24.1 7.1 69 57-139 27-102 (130)
268 2lkz_A RNA-binding protein 5; 46.7 11 0.00039 26.1 2.3 56 41-99 13-74 (95)
269 2cu1_A Mitogen-activated prote 46.7 22 0.00076 26.4 4.0 48 45-98 24-71 (103)
270 2npt_B Mitogen-activated prote 46.4 46 0.0016 24.6 5.6 47 45-97 36-82 (100)
271 2ylm_A Ubiquitin carboxyl-term 46.0 92 0.0032 28.3 8.9 43 60-102 334-378 (530)
272 2dha_A FLJ20171 protein; RRM d 45.4 67 0.0023 23.2 6.6 55 41-97 27-87 (123)
273 2dgx_A KIAA0430 protein; RRM d 45.2 27 0.00091 23.4 4.0 56 41-99 13-73 (96)
274 4b6w_A Tubulin-specific chaper 45.1 13 0.00043 25.8 2.3 44 45-88 21-67 (86)
275 1sjq_A Polypyrimidine tract-bi 45.1 65 0.0022 23.0 6.3 52 42-98 21-72 (105)
276 4eut_A Serine/threonine-protei 44.9 1.3E+02 0.0045 24.8 11.6 76 24-104 274-350 (396)
277 2ad9_A Polypyrimidine tract-bi 44.6 67 0.0023 23.4 6.4 53 41-98 35-87 (119)
278 2cpj_A Non-POU domain-containi 44.6 57 0.002 21.6 5.7 54 41-99 19-72 (99)
279 2ylm_A Ubiquitin carboxyl-term 44.4 19 0.00066 32.8 4.1 68 79-155 150-219 (530)
280 2cpe_A RNA-binding protein EWS 43.7 22 0.00076 24.3 3.5 56 41-99 19-86 (113)
281 4a8x_A RNA-binding protein wit 43.6 51 0.0017 21.0 5.2 56 41-99 8-68 (88)
282 1oo0_B CG8781-PA, drosophila Y 43.5 37 0.0013 23.0 4.7 56 41-99 30-89 (110)
283 2yh0_A Splicing factor U2AF 65 43.5 43 0.0015 24.5 5.3 57 41-98 118-176 (198)
284 2jvr_A Nucleolar protein 3; RN 43.2 38 0.0013 24.1 4.8 56 41-99 32-88 (111)
285 2db1_A Heterogeneous nuclear r 43.0 39 0.0013 23.7 4.8 54 41-96 21-79 (118)
286 2f3j_A RNA and export factor b 43.0 26 0.00089 26.8 4.1 56 41-99 92-150 (177)
287 3nmr_A Cugbp ELAV-like family 43.0 73 0.0025 22.5 6.4 57 42-99 8-68 (175)
288 2eki_A DRG 1, developmentally- 43.0 23 0.00079 25.7 3.6 71 66-153 12-87 (93)
289 3q2s_C Cleavage and polyadenyl 42.7 33 0.0011 27.3 4.8 55 41-98 72-132 (229)
290 1v8c_A MOAD related protein; r 42.5 52 0.0018 25.6 5.8 68 79-156 17-86 (168)
291 2cpx_A Hypothetical protein FL 42.3 25 0.00084 24.1 3.6 53 41-98 29-87 (115)
292 2khc_A Testis-specific RNP-typ 42.2 22 0.00074 24.6 3.3 55 41-98 44-102 (118)
293 2nnz_A Hypothetical protein; b 42.0 10 0.00035 29.6 1.6 32 63-95 27-61 (153)
294 1b7f_A Protein (SXL-lethal pro 41.9 35 0.0012 24.2 4.4 56 41-99 7-66 (168)
295 2cq1_A PTB-like protein L; RRM 41.7 63 0.0022 22.4 5.7 53 41-98 19-71 (101)
296 1p27_B RNA-binding protein 8A; 41.4 76 0.0026 21.1 6.7 58 41-99 27-86 (106)
297 2hgl_A HNRPF protein, heteroge 41.4 51 0.0017 24.3 5.4 54 41-96 48-106 (136)
298 2qfj_A FBP-interacting repress 41.0 44 0.0015 24.8 5.0 56 41-99 32-91 (216)
299 1wex_A Hypothetical protein (r 41.0 83 0.0028 21.9 6.3 53 41-98 19-71 (104)
300 2e5j_A Methenyltetrahydrofolat 40.9 67 0.0023 21.2 5.6 55 41-99 23-77 (97)
301 2r2q_A Gamma-aminobutyric acid 40.7 63 0.0021 23.4 5.7 47 58-104 20-72 (110)
302 2kkc_A Sequestosome-1; P62, PB 40.5 64 0.0022 23.5 5.7 16 86-101 42-57 (102)
303 4f02_A Polyadenylate-binding p 40.0 84 0.0029 23.9 6.7 58 41-99 19-78 (213)
304 2r2q_A Gamma-aminobutyric acid 40.0 15 0.00052 26.8 2.2 48 40-94 41-96 (110)
305 2voo_A Lupus LA protein; RNA-b 39.3 78 0.0027 24.3 6.4 57 41-98 113-170 (193)
306 3u52_E Phenol hydroxylase comp 39.2 90 0.0031 23.6 6.4 83 61-151 19-107 (119)
307 2e44_A Insulin-like growth fac 39.1 70 0.0024 20.9 5.4 56 41-99 19-75 (96)
308 1iqt_A AUF1, heterogeneous nuc 39.0 17 0.00057 22.9 2.1 53 42-97 4-60 (75)
309 2dgu_A Heterogeneous nuclear r 39.0 81 0.0028 21.1 5.8 51 41-98 15-65 (103)
310 2ytc_A PRE-mRNA-splicing facto 39.0 44 0.0015 21.3 4.2 53 41-98 16-68 (85)
311 3coq_A Regulatory protein GAL4 38.9 12 0.00039 25.2 1.3 37 23-59 51-87 (89)
312 2kt5_A RNA and export factor-b 38.6 53 0.0018 22.8 4.9 56 41-99 39-97 (124)
313 3h9d_A ATG8, microtubule-assoc 38.5 25 0.00086 26.3 3.3 40 45-91 54-97 (119)
314 2k7r_A Primosomal protein DNAI 38.3 27 0.00093 25.0 3.3 31 26-56 18-52 (106)
315 1wgr_A Growth factor receptor- 38.0 52 0.0018 23.9 4.8 80 64-154 8-93 (100)
316 3pgw_A U1-A; protein-RNA compl 37.8 60 0.0021 25.5 5.6 58 41-99 13-73 (282)
317 2kl1_A YLBL protein; structure 37.7 62 0.0021 21.9 5.1 34 50-84 38-72 (94)
318 2cjk_A Nuclear polyadenylated 37.7 27 0.00092 24.9 3.3 54 41-97 7-64 (167)
319 1eo6_A GATE-16, golgi-associat 37.4 19 0.00064 26.7 2.4 49 40-95 42-98 (117)
320 2dnq_A RNA-binding protein 4B; 37.3 83 0.0029 20.4 6.3 51 42-99 13-63 (90)
321 4dxa_B KREV interaction trappe 37.0 27 0.00093 29.1 3.6 28 65-92 5-34 (322)
322 3sde_A Paraspeckle component 1 36.7 88 0.003 24.6 6.5 56 42-98 101-157 (261)
323 2e5h_A Zinc finger CCHC-type a 36.4 36 0.0012 22.3 3.5 55 41-98 20-78 (94)
324 3idw_A Actin cytoskeleton-regu 36.1 0.6 2.1E-05 32.9 -5.7 27 133-159 40-66 (72)
325 1wel_A RNA-binding protein 12; 35.5 35 0.0012 24.0 3.5 55 41-96 29-85 (124)
326 2dnl_A Cytoplasmic polyadenyla 35.0 39 0.0013 23.4 3.7 54 41-98 12-72 (114)
327 3ns6_A Eukaryotic translation 35.0 22 0.00076 24.2 2.3 56 41-99 10-75 (100)
328 1wg5_A Heterogeneous nuclear r 34.7 30 0.001 23.6 3.0 54 41-97 19-76 (104)
329 2l97_A HTRA, putative serine p 34.1 69 0.0024 23.2 5.1 34 50-84 90-124 (134)
330 2cjk_A Nuclear polyadenylated 33.7 32 0.0011 24.5 3.1 52 42-96 92-147 (167)
331 2fc9_A NCL protein; structure 33.2 46 0.0016 22.1 3.7 53 41-99 19-74 (101)
332 2wlb_A ETP1-FD, electron trans 32.2 75 0.0026 21.8 4.8 30 63-92 1-30 (103)
333 1fjc_A Nucleolin RBD2, protein 32.1 40 0.0014 22.2 3.2 55 41-99 20-74 (96)
334 1mli_A Muconolactone isomerase 32.0 25 0.00084 25.7 2.2 37 78-120 7-46 (96)
335 2cq4_A RNA binding motif prote 32.0 34 0.0011 23.5 2.9 52 41-95 29-84 (114)
336 1x4d_A Matrin 3; structural ge 31.9 75 0.0025 22.3 4.8 53 42-99 20-73 (102)
337 1qbe_A Bacteriophage Q beta ca 31.7 13 0.00044 28.2 0.7 27 17-44 97-123 (132)
338 2cpi_A CCR4-NOT transcription 31.7 47 0.0016 22.8 3.6 57 41-99 19-84 (111)
339 2nlw_A Eukaryotic translation 31.2 31 0.001 23.6 2.5 55 41-98 19-81 (105)
340 2ghp_A U4/U6 snRNA-associated 30.9 59 0.002 25.7 4.6 53 41-96 45-99 (292)
341 2jvo_A Nucleolar protein 3; nu 30.7 1.3E+02 0.0044 20.6 6.4 51 42-99 36-86 (108)
342 2m2b_A RNA-binding protein 10; 30.2 33 0.0011 24.3 2.7 56 41-100 27-88 (131)
343 1wjn_A Tubulin-folding protein 30.2 55 0.0019 22.4 3.7 33 40-72 24-59 (97)
344 2cpd_A Apobec-1 stimulating pr 29.6 1.2E+02 0.0041 19.9 6.3 52 41-99 19-72 (99)
345 3m95_A Autophagy related prote 29.6 1.8E+02 0.0061 21.8 7.5 51 53-104 25-81 (125)
346 1n62_A Carbon monoxide dehydro 29.3 54 0.0019 25.6 4.0 27 66-93 4-30 (166)
347 3khf_A Microtubule-associated 28.9 67 0.0023 21.4 4.0 40 38-78 55-97 (99)
348 1ffv_A CUTS, iron-sulfur prote 28.3 59 0.002 25.3 4.0 27 66-93 4-30 (163)
349 3hrd_D Nicotinate dehydrogenas 28.2 59 0.002 25.3 4.0 26 66-92 4-29 (160)
350 2j76_E EIF-4B, EIF4B, eukaryot 28.0 27 0.00092 23.6 1.8 51 41-95 23-78 (100)
351 1rm6_C 4-hydroxybenzoyl-COA re 27.9 55 0.0019 25.2 3.7 24 72-95 8-31 (161)
352 3i18_A LMO2051 protein; alpha- 27.9 97 0.0033 21.0 4.7 34 50-84 40-74 (100)
353 3smz_A Protein raver-1, ribonu 27.6 1.7E+02 0.0057 22.9 6.7 57 42-99 100-158 (284)
354 2lea_A Serine/arginine-rich sp 27.4 28 0.00094 25.3 1.8 55 41-98 51-109 (135)
355 3tr3_A BOLA; cellular processe 27.3 1E+02 0.0036 21.3 4.8 35 49-84 5-39 (82)
356 2pzd_A Serine protease HTRA2; 27.2 1.2E+02 0.004 20.8 5.1 32 50-84 69-100 (113)
357 2c7h_A RBBP6, retinoblastoma-b 27.1 1.3E+02 0.0044 21.4 5.3 39 63-101 4-44 (86)
358 3chb_D Cholera toxin; toxin/re 26.5 71 0.0024 23.2 3.8 33 68-100 39-71 (104)
359 3tyt_A Heterogeneous nuclear r 26.4 73 0.0025 24.6 4.3 56 42-100 128-187 (205)
360 2i6v_A General secretion pathw 26.2 1.1E+02 0.0037 20.1 4.6 32 50-82 53-85 (87)
361 3tca_A Amyloid beta A4 precurs 26.0 1.1E+02 0.0037 24.2 5.3 36 65-100 34-69 (291)
362 2cpy_A RNA-binding protein 12; 25.9 34 0.0012 23.7 2.0 54 41-97 19-76 (114)
363 2la4_A Nuclear and cytoplasmic 25.6 1.5E+02 0.005 19.5 6.5 54 41-99 31-84 (101)
364 2kmc_A Fermitin family homolog 25.5 2E+02 0.0069 21.1 8.9 75 66-153 20-99 (102)
365 2lmi_A GRSF-1, G-rich sequence 25.1 29 0.00099 23.8 1.5 53 41-96 15-73 (107)
366 1wf1_A RNA-binding protein RAL 25.1 1.5E+02 0.0051 19.9 5.3 51 41-98 31-82 (110)
367 1t0y_A Tubulin folding cofacto 25.1 45 0.0016 24.1 2.6 33 44-76 23-58 (122)
368 2kjp_A Uncharacterized protein 25.0 38 0.0013 23.1 2.1 34 50-84 34-68 (91)
369 2hga_A Conserved protein MTH13 25.0 58 0.002 23.6 3.2 32 50-84 58-90 (125)
370 2xs2_A Deleted in azoospermia- 24.7 64 0.0022 21.4 3.2 53 41-96 13-68 (102)
371 3cyy_A Tight junction protein 24.5 67 0.0023 21.0 3.2 34 48-83 58-91 (92)
372 2zjr_Q 50S ribosomal protein L 24.0 73 0.0025 22.9 3.5 23 78-100 25-47 (95)
373 1rws_A Hypothetical protein PF 23.9 15 0.00052 24.6 -0.2 54 74-154 21-74 (77)
374 1b8q_A Protein (neuronal nitri 23.8 86 0.0029 22.0 3.9 34 49-83 69-102 (127)
375 1ltr_D ETB-R2, heat-labIle ent 23.7 49 0.0017 24.4 2.5 33 68-100 38-70 (113)
376 3lxf_A Ferredoxin; iron, iron- 23.2 92 0.0031 21.8 3.9 25 67-91 2-26 (104)
377 3r8s_T 50S ribosomal protein L 22.9 99 0.0034 22.0 4.0 26 76-101 28-53 (93)
378 1t6a_A Rbstp2229 gene product; 22.9 1.2E+02 0.004 23.2 4.6 29 66-94 69-98 (126)
379 1qau_A Neuronal nitric oxide s 22.8 85 0.0029 21.4 3.6 45 38-83 48-95 (112)
380 3id1_A Regulator of sigma E pr 22.7 1.5E+02 0.0052 19.9 4.9 33 50-82 36-70 (95)
381 3rle_A Golgi reassembly-stacki 22.3 85 0.0029 24.3 3.9 36 49-84 145-181 (209)
382 1nu4_A U1A RNA binding domain; 22.3 35 0.0012 22.4 1.5 56 41-99 12-72 (97)
383 1vq8_S 50S ribosomal protein L 22.3 79 0.0027 22.2 3.3 27 76-102 23-49 (85)
384 1wf0_A TDP-43, TAR DNA-binding 22.2 47 0.0016 21.5 2.1 30 42-72 10-39 (88)
385 3egn_A RNA-binding protein 40; 21.9 65 0.0022 22.9 2.9 55 41-99 49-113 (143)
386 2hzc_A Splicing factor U2AF 65 21.8 1.1E+02 0.0039 19.3 3.9 51 41-95 10-70 (87)
387 1eo6_A GATE-16, golgi-associat 21.8 2.4E+02 0.0081 20.5 6.6 47 58-104 21-73 (117)
388 2i2y_A Fusion protein consists 21.7 1.9E+02 0.0064 20.6 5.5 54 42-99 78-131 (150)
389 2kvr_A Ubiquitin carboxyl-term 21.6 1.1E+02 0.0039 22.7 4.3 26 79-104 59-84 (130)
390 2vsp_A PDZ domain-containing p 21.5 80 0.0027 20.8 3.2 37 38-75 48-87 (91)
391 2p3w_A Probable serine proteas 21.4 1.3E+02 0.0045 20.5 4.4 32 50-84 69-100 (112)
392 3smz_A Protein raver-1, ribonu 21.3 2E+02 0.0069 22.4 6.0 58 41-99 188-247 (284)
393 3sde_A Paraspeckle component 1 21.3 2.7E+02 0.0093 21.7 6.8 54 41-99 26-79 (261)
394 2y3a_A Phosphatidylinositol-4, 21.3 1.3E+02 0.0045 30.2 5.8 84 61-153 47-136 (1092)
395 3zzy_A Polypyrimidine tract-bi 21.2 2.5E+02 0.0086 20.7 6.8 55 42-100 33-88 (130)
396 3j21_T 50S ribosomal protein L 20.9 1.2E+02 0.0041 21.4 4.1 27 76-102 24-50 (86)
397 2i4s_A General secretion pathw 20.9 1.1E+02 0.0038 20.9 3.9 32 50-82 71-103 (105)
398 2hgn_A Heterogeneous nuclear r 20.7 46 0.0016 24.7 1.9 51 41-95 50-103 (139)
399 1t11_A Trigger factor, TF; hel 20.7 87 0.003 27.2 4.0 34 63-100 1-36 (392)
400 2dis_A Unnamed protein product 20.4 1.1E+02 0.0038 20.4 3.7 55 41-98 12-72 (109)
401 2ki2_A SS-DNA binding protein 20.3 62 0.0021 20.9 2.4 53 42-98 6-62 (90)
No 1
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.97 E-value=3.3e-32 Score=205.59 Aligned_cols=97 Identities=36% Similarity=0.594 Sum_probs=92.4
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.|+||+|+|++++|+.|+|+|++++||+|||++|+.++..+|.+++|+++|||+|+|.+|||+|.|++|.+|+++|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 48999999999999999999999999999999999999888888889999999999999999999998888999999999
Q ss_pred CCCCCEEEEEeeeecCC
Q 030379 142 VRNNSQVQFVPFVLSKG 158 (178)
Q Consensus 142 Ikdgd~L~F~~rl~~~~ 158 (178)
|++|++|||+.|++.+.
T Consensus 84 I~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CCSSEEEEEEECSCSCC
T ss_pred CCCCCEEEEEehhccCC
Confidence 99999999999998874
No 2
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=1.1e-14 Score=101.10 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=67.8
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
|..|+|+|+..+|+.+.|.|++++||.|||..|++.....+.++ .|+|.|+.| +|+.+|.+|||
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q---------------rL~~~g~~L-~d~~tL~~~~i 64 (85)
T 3mtn_B 1 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNI 64 (85)
T ss_dssp --CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTEEC-CTTSBTGGGTC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHE---------------EEEECCEEC-CCCCCHHHcCC
Confidence 67899999999999999999999999999999999987655533 788999654 78899999999
Q ss_pred CCCCEEEEEeeeec
Q 030379 143 RNNSQVQFVPFVLS 156 (178)
Q Consensus 143 kdgd~L~F~~rl~~ 156 (178)
++|++|+++.|++.
T Consensus 65 ~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 65 QKWSTLFLLLRLRG 78 (85)
T ss_dssp CTTCEEEEECCCCC
T ss_pred CCCCEEEEEEECcC
Confidence 99999999998854
No 3
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.57 E-value=1.3e-14 Score=103.66 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=69.3
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
+.+..|+|+|+..+|+.+.|.|+.++||.+||..|+......+.++ .|+|.|+. ++|+.+|.+|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk~-L~D~~tL~~~ 76 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDY 76 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTEE-CCTTCBTGGG
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhE---------------EEEECCeE-CCCcCcHHHC
Confidence 4466799999999999999999999999999999999987655533 79999965 4788999999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
||++|++|+++.|++
T Consensus 77 gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 77 NIQKESTLHLVLRLR 91 (91)
T ss_dssp TCCTTCEEEEECCCC
T ss_pred CCCCCCEEEEEEecC
Confidence 999999999998874
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=99.69 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=67.4
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|.|+|+..+|+.+.+.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rL~~~G~~L-~d~~tL~~~~i~ 66 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF---------------WLTFEGKPL-EDQLPLGEYGLK 66 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGE---------------EEEETTEEC-CTTSBGGGGTCC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHE---------------EEEECCEEC-CCCCcHHHCCCC
Confidence 4699999999999999999999999999999999976555532 799999655 788999999999
Q ss_pred CCCEEEEEeeee
Q 030379 144 NNSQVQFVPFVL 155 (178)
Q Consensus 144 dgd~L~F~~rl~ 155 (178)
+|++|+++.|++
T Consensus 67 ~~~~l~l~~rl~ 78 (79)
T 3phx_B 67 PLSTVFMNLRLR 78 (79)
T ss_dssp TTCEEEEEECCB
T ss_pred CCCEEEEEEecC
Confidence 999999999875
No 5
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=7.4e-15 Score=102.16 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=66.4
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
|..|+|+|+..+|+.+.|.|++++||.+||.+|+......++++ .|+|.|+.| +|+.+|.+|||
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~q---------------rL~~~g~~L-~d~~tL~~~~i 64 (85)
T 3n3k_B 1 GSHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNI 64 (85)
T ss_dssp ---CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETBEEC-CTTCBTTTTTC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHE---------------EEEECCeEC-CCCCCHHHCCC
Confidence 57899999999999999999999999999999999987655532 799999755 78889999999
Q ss_pred CCCCEEEEEeeeec
Q 030379 143 RNNSQVQFVPFVLS 156 (178)
Q Consensus 143 kdgd~L~F~~rl~~ 156 (178)
++|++|+++.|++.
T Consensus 65 ~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 65 HNHSALYLLLKLRG 78 (85)
T ss_dssp CTTCEEEEEECCC-
T ss_pred CCCCEEEEEEeccC
Confidence 99999999999854
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.55 E-value=2.2e-14 Score=100.54 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=68.6
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.+..|+|+|+..+|+.+.|.|++++||.+||..|+......+.++ .|+|.|+. ++|+.+|.+||
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rL~~~G~~-L~d~~tL~~~~ 72 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---------------RLIYSGKQ-MNDEKTAADYK 72 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------CEEETTEE-CCTTSBGGGGT
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHE---------------EEEECCeE-CCCCCcHHHcC
Confidence 456799999999999999999999999999999999986555532 68999965 47899999999
Q ss_pred CCCCCEEEEEeeee
Q 030379 142 VRNNSQVQFVPFVL 155 (178)
Q Consensus 142 Ikdgd~L~F~~rl~ 155 (178)
|++|++|+++.|++
T Consensus 73 i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 73 ILGGSVLHLVLRLR 86 (88)
T ss_dssp CCTTCEEEECCCCC
T ss_pred CCCCCEEEEEEeCC
Confidence 99999999998875
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.1e-14 Score=104.47 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=67.5
Q ss_pred hhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
...+..|+|+|+..+|+.+.|.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~L-~D~~tL~~ 80 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSD 80 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTEEC-CTTCBSGG
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE---------------EEEECCEEC-CCCCcHHH
Confidence 35677899999999999999999999999999999999987655533 799999655 78999999
Q ss_pred cCCCCCCEEEEEeeee
Q 030379 140 CGVRNNSQVQFVPFVL 155 (178)
Q Consensus 140 yGIkdgd~L~F~~rl~ 155 (178)
|||++|++|+++.|++
T Consensus 81 ~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 81 YNIQKESTLHLVLRLR 96 (98)
T ss_dssp GTCCTTEEEEEECBCS
T ss_pred CCCCCCCEEEEEEecC
Confidence 9999999999999875
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.54 E-value=3.7e-14 Score=96.09 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=65.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|++++||.+||..|+......+.+ ..|+|.|+.| +|+.+|.+|||++|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~---------------q~L~~~g~~L-~d~~tL~~~~i~~g 64 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ---------------QRLIYSGKQM-NDEKTAADYKILGG 64 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG---------------EEEEETTEEC-CTTSBGGGGTCCTT
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHH---------------EEEEECCEEC-CCCCcHHHcCCCCC
Confidence 8999999999999999999999999999999987655543 2789999755 78899999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|+++.|+.
T Consensus 65 ~~i~l~~~~~ 74 (76)
T 1ndd_A 65 SVLHLVLALR 74 (76)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEeCC
Confidence 9999998874
No 9
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.53 E-value=4.4e-14 Score=95.71 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=65.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|++++||.+||..|++.....+.+ ..|+|.|+.| +|+.+|.+|||++|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~---------------q~L~~~g~~L-~d~~tL~~~~i~~g 64 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGKQL-EDGRTLSDYNIQRE 64 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG---------------EEEEETTEEC-CTTCBTGGGTCCTT
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH---------------eEEEECCeEC-CCCCcHHHcCCCCC
Confidence 8999999999999999999999999999999988655443 3799999755 77899999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|++..|+.
T Consensus 65 ~~i~l~~~~~ 74 (76)
T 3a9j_A 65 STLHLVLRLR 74 (76)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEeCC
Confidence 9999998874
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.53 E-value=3.1e-14 Score=101.70 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=66.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.|.|++++||.+||..|+......++++ .|+|.|+. ++|+.+|.+|||++|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~-L~D~~tL~~~~i~~g 64 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---------------RLIYSGKQ-MNDEKTAADYKILGG 64 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTEE-CCTTSBTTTTTCCTT
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHE---------------EEEECCeE-CCCCCcHHHcCCCCC
Confidence 89999999999999999999999999999999987555533 79999964 578999999999999
Q ss_pred CEEEEEeeeecC
Q 030379 146 SQVQFVPFVLSK 157 (178)
Q Consensus 146 d~L~F~~rl~~~ 157 (178)
++|+++.|++.-
T Consensus 65 ~~l~l~~rl~Gg 76 (88)
T 4fbj_B 65 SVLHLVLALRGG 76 (88)
T ss_dssp CEEEEECBCC--
T ss_pred CEEEEEEECCCC
Confidence 999999988653
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=7.3e-14 Score=99.75 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=67.1
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
+-.-|+|+|+..+|+.+.|.|++++||.+||..|+......+++| .|+|.|+.+++|+.+|.+||
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~lL~D~~tL~~y~ 71 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQ---------------TLIVDGIVILREDLTVEQCQ 71 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGE---------------EEEETTEECCCSSSBHHHHT
T ss_pred ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHE---------------EEEECCEEecCCcCCHHHcC
Confidence 346799999999999999999999999999999999987655533 79999975267899999999
Q ss_pred CCCCCEEEEEee
Q 030379 142 VRNNSQVQFVPF 153 (178)
Q Consensus 142 Ikdgd~L~F~~r 153 (178)
|++|++|+++.+
T Consensus 72 I~~gs~i~lv~~ 83 (84)
T 2kk8_A 72 IVPTSDIQLEVS 83 (84)
T ss_dssp CCTTSCEEEEEC
T ss_pred CCCCCEEEEEEc
Confidence 999999998754
No 12
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.51 E-value=7.9e-14 Score=99.74 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=67.0
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
.|+|+|+..+|+.+.|.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||++
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~q---------------rL~~~G~~L-~d~~tL~~~~i~~ 64 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNIQK 64 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEEC-CTTSBTGGGTCCT
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHE---------------EEEECCEEC-CCCCcHHHcCCCC
Confidence 399999999999999999999999999999999986555532 799999755 7888999999999
Q ss_pred CCEEEEEeeeecC
Q 030379 145 NSQVQFVPFVLSK 157 (178)
Q Consensus 145 gd~L~F~~rl~~~ 157 (178)
|++|+++.|++.-
T Consensus 65 ~~~i~l~~r~~gG 77 (96)
T 3k9o_B 65 ESTLHLVLRLRGY 77 (96)
T ss_dssp TCEEEEEECCCC-
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998654
No 13
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.1e-14 Score=96.07 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=65.3
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.|.|++++||++||..|+......+.++ .|+|.|+.| +|+.+|.+|||+
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~q---------------rL~~~gk~L-~d~~tL~~~~i~ 69 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQ---------------RLLFKGKAL-ADGKRLSDYSIG 69 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTC---------------EEEETTEEC-CTTSBGGGGTCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHE---------------EEEECCeEC-CCCCcHHHcCCC
Confidence 3599999999999999999999999999999999876554432 789999755 788999999999
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+|++|+++.++
T Consensus 70 ~g~~i~l~~~~ 80 (81)
T 2dzi_A 70 PNSKLNLVVKP 80 (81)
T ss_dssp SSBCCEEECCC
T ss_pred CCCEEEEEEeC
Confidence 99999998775
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=97.55 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=65.3
Q ss_pred hhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
++....|+|+|+..+|+.+.+.|++++||.+||..|+......+++| .|+|.|+ +++|+.+|.+
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~ 75 (88)
T 4eew_A 12 VEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ---------------RLIYQGR-VLQDDKKLQE 75 (88)
T ss_dssp ---CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---------------EEEETTE-ECCTTSBGGG
T ss_pred ecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCE-ECCCCCcHHH
Confidence 34567799999999999999999999999999999999986655533 7999996 5578999999
Q ss_pred cCCCCCCEEEEEee
Q 030379 140 CGVRNNSQVQFVPF 153 (178)
Q Consensus 140 yGIkdgd~L~F~~r 153 (178)
||| +|++||++.|
T Consensus 76 ~~i-~g~~i~lv~R 88 (88)
T 4eew_A 76 YNV-GGKVIHLVER 88 (88)
T ss_dssp GTC-TTEEEEEEEC
T ss_pred cCC-CCcEEEEEEC
Confidence 999 8999999865
No 15
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.2e-13 Score=98.61 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=64.1
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
=|-|.|.|++.+|+.+.|.|++++||.+||.+|+......++++ .|+|.|+.| +|+.+|.+|||
T Consensus 7 ~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk~L-~D~~tL~~~gi 70 (88)
T 1sif_A 7 LQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNI 70 (88)
T ss_dssp ---CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGC---------------EEEETTEEC-CTTSBSGGGTC
T ss_pred ccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhE---------------EEEECCEEC-CCCCcHHHcCC
Confidence 36799999999999999999999999999999999987555533 789999755 68899999999
Q ss_pred CCCCEEEEEeeeec
Q 030379 143 RNNSQVQFVPFVLS 156 (178)
Q Consensus 143 kdgd~L~F~~rl~~ 156 (178)
++|++|+++.++..
T Consensus 71 ~~g~~i~l~~r~~G 84 (88)
T 1sif_A 71 QKESTLHLVLRLRG 84 (88)
T ss_dssp CTTCEEEEEC----
T ss_pred CCCCEEEEEEeCCC
Confidence 99999999988753
No 16
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=1.7e-13 Score=96.24 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=67.0
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.+.|++++||.+||.+|+......+++ ..|+|.|+.| +|+++|.+|||+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~---------------qrL~~~Gk~L-~d~~tL~~~~i~ 69 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ---------------QQLEFQGQVL-QDWLGLGIYGIQ 69 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTT---------------EEEEETTEEC-CSSSBHHHHTCC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHH---------------EEEEECCEEc-cCCCCHHHCCCC
Confidence 359999999999999999999999999999999997655443 2789999755 788999999999
Q ss_pred CCCEEEEEeeeec
Q 030379 144 NNSQVQFVPFVLS 156 (178)
Q Consensus 144 dgd~L~F~~rl~~ 156 (178)
+|++|+++.|+..
T Consensus 70 ~g~~i~l~~~~~G 82 (87)
T 1wh3_A 70 DSDTLILSKKKGS 82 (87)
T ss_dssp TTEEEEEEECSCC
T ss_pred CCCEEEEEEeccC
Confidence 9999999988753
No 17
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.47 E-value=8.4e-14 Score=103.93 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=68.1
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
..+|+|+|+..+|+.+.|.|++++||.+||..|+......+.++ +|+|.|+. ++|+.+|.+|||
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~-L~D~~tL~~~gI 96 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYNI 96 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEE-CCTTSBTTTTTC
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHE---------------EEEECCEE-CCCCCcHHHCCC
Confidence 34699999999999999999999999999999999987655533 79999965 578899999999
Q ss_pred CCCCEEEEEeeee
Q 030379 143 RNNSQVQFVPFVL 155 (178)
Q Consensus 143 kdgd~L~F~~rl~ 155 (178)
++|++|+++.|++
T Consensus 97 ~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 97 QKESTLHLVLRLR 109 (111)
T ss_dssp CTTCEEEEEECCC
T ss_pred CCCCEEEEEEecC
Confidence 9999999999875
No 18
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.47 E-value=3.3e-13 Score=92.17 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=62.2
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
+|+|+|+. +|+.+.+.|++++||.+||..|+......+.+ ..|+|.|+.| +|+.+|.+|||++
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~---------------qrL~~~gk~L-~d~~tL~~~~i~~ 66 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVAN---------------QRLIYSGKIL-KDDQTVESYHIQD 66 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG---------------EEEEETTEEC-CTTSBTGGGTCCT
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHH---------------EEEEECCeEc-CCCCCHHHcCCCC
Confidence 38999988 99999999999999999999999998655553 2789999754 6789999999999
Q ss_pred CCEEEEEee
Q 030379 145 NSQVQFVPF 153 (178)
Q Consensus 145 gd~L~F~~r 153 (178)
|++|+++.+
T Consensus 67 g~~i~l~~~ 75 (77)
T 2bwf_A 67 GHSVHLVKS 75 (77)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999998764
No 19
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=2.7e-13 Score=93.36 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=64.7
Q ss_pred ceEEEEEccCCceE-EEE-eCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 65 AMRISILKLDGTSF-DVA-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 65 AMkLtV~k~dg~~~-~V~-V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
.|+|+|+..+|+.+ .+. |++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~q---------------rL~~~g~~L-~d~~tL~~~~i 65 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQ---------------RLFYRGKQM-EDGHTLFDYEV 65 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEEC-CTTCBTTTTTC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhE---------------EEEECCEEC-CCCCCHHHcCC
Confidence 59999999999985 999 9999999999999999976555532 789999755 78899999999
Q ss_pred CCCCEEEEEeee
Q 030379 143 RNNSQVQFVPFV 154 (178)
Q Consensus 143 kdgd~L~F~~rl 154 (178)
++|++|+++.|+
T Consensus 66 ~~g~~i~l~~r~ 77 (78)
T 2faz_A 66 RLNDTIQLLVRQ 77 (78)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEEeC
Confidence 999999998775
No 20
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=97.42 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=65.7
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.+.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk~L-~D~~tL~~~~I~ 66 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF---------------WLTFEGKPL-EDQLPLGEYGLK 66 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTE---------------EEESSSSCC-CTTSBHHHHHCS
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE---------------EEEECCEEC-CCCCcHHHcCCC
Confidence 4699999999999999999999999999999999976555533 799999755 788999999999
Q ss_pred CCCEEEEEeeeecCC
Q 030379 144 NNSQVQFVPFVLSKG 158 (178)
Q Consensus 144 dgd~L~F~~rl~~~~ 158 (178)
+|++|+++.+.....
T Consensus 67 ~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 67 PLSTVFMNLRLRGGL 81 (88)
T ss_dssp TTCEEEEEEC-----
T ss_pred CCCEEEEEEEcCCCc
Confidence 999999998876543
No 21
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.46 E-value=2.2e-13 Score=94.25 Aligned_cols=76 Identities=11% Similarity=0.199 Sum_probs=66.6
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.+.|.++.||.+||.+|+......+. +..|+|+|+.| .|+.+|.+|||.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~---------------~qrL~~~G~~L-~d~~tl~~~~i~ 65 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN---------------SLRFLFEGQRI-ADNHTPKELGME 65 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GEEEEETTEEC-CTTCCHHHHTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcc---------------cEEEEECCEEe-CCCCCHHHcCCC
Confidence 36999999999999999999999999999999998765444 23799999766 678999999999
Q ss_pred CCCEEEEEeeee
Q 030379 144 NNSQVQFVPFVL 155 (178)
Q Consensus 144 dgd~L~F~~rl~ 155 (178)
+|++|+++.++.
T Consensus 66 ~~~~i~l~~~~~ 77 (79)
T 2uyz_B 66 EEDVIEVYQEQT 77 (79)
T ss_dssp TTEEEEEEECCC
T ss_pred CCCEEEEEEecc
Confidence 999999998764
No 22
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.46 E-value=4.1e-13 Score=93.68 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=62.4
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh---ccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV---NDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~---~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.|+|+|+..+|+.+.+.|++++||.+||..|+..+ ...+.+ ..|+|.|+.| +|+.+|.+||
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~---------------qrLi~~Gk~L-~D~~tL~~~~ 68 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG---------------QKLIYAGKIL-SDDVPIRDYR 68 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG---------------EEEEETTEEC-CTTSBGGGGC
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHH---------------eEEEECCEEC-cCCCCHHHcC
Confidence 59999999999999999999999999999999984 232332 3799999755 7889999999
Q ss_pred CCCCCEEEEEee
Q 030379 142 VRNNSQVQFVPF 153 (178)
Q Consensus 142 Ikdgd~L~F~~r 153 (178)
|++|++|+++.+
T Consensus 69 i~~g~~i~l~~~ 80 (85)
T 2wyq_A 69 IDEKNFVVVMVT 80 (85)
T ss_dssp CCTTSEEEEEEC
T ss_pred CCCCCEEEEEEc
Confidence 999999999764
No 23
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.44 E-value=4.7e-13 Score=96.75 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=65.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.|.|++++||.+||..|+......+.+ ..|+|.|+.| +|+.+|.+|||++|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~---------------qrL~~~Gk~L-~D~~tL~~~gi~~g 64 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGKQL-EDGRTLSDYNIQKE 64 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGG---------------EEEEETTEEC-CTTSBTGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhh---------------EEEEECCEEC-CCCCCHHHcCCCCC
Confidence 8999999999999999999999999999999998655553 2789999755 78899999999999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
++|+++.++.
T Consensus 65 ~~i~l~~~~~ 74 (98)
T 1yx5_B 65 STLHLVLRLR 74 (98)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEeCC
Confidence 9999998875
No 24
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.44 E-value=5.4e-13 Score=94.54 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=66.3
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.|.|..++||.+||..|+......+.++ .|+|.|+. ++|+.+|.+|||
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rLi~~Gk~-L~d~~tL~~~~i- 66 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ---------------RLIYQGRV-LQDDKKLQEYNV- 66 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---------------EEEETTEE-CCTTSBGGGGTC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCeE-CCCCCCHHHcCC-
Confidence 4699999999999999999999999999999999986555532 79999964 578999999999
Q ss_pred CCCEEEEEeeeec
Q 030379 144 NNSQVQFVPFVLS 156 (178)
Q Consensus 144 dgd~L~F~~rl~~ 156 (178)
+|++|+++.+...
T Consensus 67 ~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 67 GGKVIHLVERAPP 79 (90)
T ss_dssp TTEEEEEEECCCC
T ss_pred CCcEEEEEecCCC
Confidence 9999999988754
No 25
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=5.7e-13 Score=94.05 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=66.3
Q ss_pred CceEEEEEccCC-ceEEE-EeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 64 SAMRISILKLDG-TSFDV-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 64 ~AMkLtV~k~dg-~~~~V-~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
..|+|+|+..+| +.+.| .|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rL~~~gk~L-~d~~tL~~~~ 69 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQ---------------RLFYRGKQL-ENGYTLFDYD 69 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTE---------------EEEETTEEC-CSSSBHHHHT
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhE---------------EEEECCeEC-CCCCCHHHCC
Confidence 459999999999 79999 49999999999999999976555532 789999755 7889999999
Q ss_pred CCCCCEEEEEeeeec
Q 030379 142 VRNNSQVQFVPFVLS 156 (178)
Q Consensus 142 Ikdgd~L~F~~rl~~ 156 (178)
|++|++|+++.++..
T Consensus 70 i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 70 VGLNDIIQLLVRPDS 84 (89)
T ss_dssp CCTTCEEEEEECCCC
T ss_pred CCCCCEEEEEEeCCC
Confidence 999999999988753
No 26
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.15 E-value=1e-14 Score=99.97 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=65.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q---------------rL~~~gk~L-~d~~tL~~~~i~~g 64 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQL---------------RVIFAGKEL-PNHLTVQNCDLEQQ 64 (76)
Confidence 89999999999999999999999999999999876544432 688999755 78899999999999
Q ss_pred CEEEEEeeeec
Q 030379 146 SQVQFVPFVLS 156 (178)
Q Consensus 146 d~L~F~~rl~~ 156 (178)
++|+++.|++.
T Consensus 65 ~~i~l~~rlrg 75 (76)
T 3b1l_X 65 SIVHIVQRPRR 75 (76)
Confidence 99999998864
No 27
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=1.2e-12 Score=94.68 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=63.9
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh---ccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV---NDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~---~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
|+|+|+..+|+.+.|.|++++||.+||..|+..+ ...+.+ ..|+|.|+.| +|+.+|.+|||
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~---------------qrLi~~Gk~L-~D~~tL~~ygI 64 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAG---------------QKLIYAGKIL-NDDTALKEYKI 64 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTT---------------EEEEETTEEC-CTTSBGGGGTC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhh---------------EEEEECCEEC-CCcCcHHHCCC
Confidence 8999999999999999999999999999999984 222332 3799999755 78899999999
Q ss_pred CCCCEEEEEeeeecC
Q 030379 143 RNNSQVQFVPFVLSK 157 (178)
Q Consensus 143 kdgd~L~F~~rl~~~ 157 (178)
++|++|+++.+-...
T Consensus 65 ~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 65 DEKNFVVVMVTKPKA 79 (95)
T ss_dssp CSSSEEEEEESSCCC
T ss_pred CCCCEEEEEEeCCCC
Confidence 999999998765433
No 28
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=6.6e-13 Score=99.40 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=62.7
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|+|+.+.|+.+.|+|.+++||.+||+.|+.+....++++ +|+|.|+.| +|+.+|.+|||.+|
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQ---------------rLi~~Gk~L-~D~~TL~dygI~~g 92 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKI---------------VLKKWYTIF-KDHVSLGDYEIHDG 92 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGC---------------EEEETTEEC-CSSCBHHHHTCCTT
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHE---------------EEEECCEEC-CCCCCHHHcCCCCC
Confidence 99999999999999999999999999999999987655543 899999755 78999999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
++|++.
T Consensus 93 stlhL~ 98 (100)
T 1uh6_A 93 MNLELY 98 (100)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 998864
No 29
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4e-13 Score=99.50 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=64.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.|.|+.+.||.+||..|+......+.+| .|+|.|+. ++|+.+|.+|||++|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~-L~D~~tL~~~~i~~g 65 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQI---------------KLIYSGKV-LQDSKTVSECGLKDG 65 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGC---------------EEEETTEE-CCTTSBTTTTTCCTT
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhE---------------EEEECCEE-CCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999987555533 79999964 578899999999999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
++|+++.+-
T Consensus 66 ~~i~lv~~~ 74 (106)
T 3m62_B 66 DQVVFMVSQ 74 (106)
T ss_dssp CEEEEECCC
T ss_pred CEEEEEEcC
Confidence 999998774
No 30
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.41 E-value=2.3e-12 Score=97.57 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=66.3
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|.|+|+..+|+.+.+.|++++||.+||+.|+......+++ ..|+|.|+.| +|+.+|.+|||+
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~---------------qrL~~~g~~L-~d~~tL~~~~i~ 138 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGKQL-EDGRTLSDYNIQ 138 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---------------EEEEETTEEC-CTTSBTGGGTCC
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhh---------------EEEEECCEEC-CCCCCHHHcCCC
Confidence 348999999999999999999999999999999987655443 3789999755 789999999999
Q ss_pred CCCEEEEEeeee
Q 030379 144 NNSQVQFVPFVL 155 (178)
Q Consensus 144 dgd~L~F~~rl~ 155 (178)
+|++|+++.|++
T Consensus 139 ~~~~i~l~~r~~ 150 (152)
T 3b08_A 139 KESTLHLVLRLR 150 (152)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCEEEEEEecC
Confidence 999999998875
No 31
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=97.35 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=66.9
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.|.|++++||.+||.+|+......+.+ ..|+|.|+.| +|+.+|.+|||+
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---------------qrLi~~Gk~L-~D~~tL~~~gI~ 97 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGKQL-EDGRTLSDYNIQ 97 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTT---------------EEEEETTEEC-CSSCBTTTTTCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCccc---------------EEEEECCEEC-CCCCcHHHcCCC
Confidence 469999999999999999999999999999999998655443 2789999755 788999999999
Q ss_pred CCCEEEEEeeee
Q 030379 144 NNSQVQFVPFVL 155 (178)
Q Consensus 144 dgd~L~F~~rl~ 155 (178)
+|++|+++.|++
T Consensus 98 ~gs~I~l~~rl~ 109 (111)
T 2ojr_A 98 KESTLHLVLRLR 109 (111)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCEEEEEEeCC
Confidence 999999998875
No 32
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=1.5e-12 Score=95.68 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=66.3
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+ +.|.|++++||.+||..|+......+.++ .|+|.|+. ++|+.+|.+|||+
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~-L~D~~tL~~ygI~ 83 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQL---------------VLIFAGKI-LKDPDSLAQCGVR 83 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGE---------------EEEETTEE-CCTTSBHHHHTCC
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhE---------------EEEECCEE-CCCcCcHHHCCCC
Confidence 4599999999886 79999999999999999999987555533 79999964 5788999999999
Q ss_pred CCCEEEEEeeeecC
Q 030379 144 NNSQVQFVPFVLSK 157 (178)
Q Consensus 144 dgd~L~F~~rl~~~ 157 (178)
+|++|+++.+++..
T Consensus 84 ~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 84 DGLTVHLVIKRQHR 97 (100)
T ss_dssp TTCEEEEEECCCCS
T ss_pred CCCEEEEEEcCCCC
Confidence 99999999887654
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.39 E-value=1.2e-12 Score=95.28 Aligned_cols=79 Identities=11% Similarity=0.216 Sum_probs=67.9
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..+..|+|+|+..+|+.+.+.|.++.||.+||.+|+......+. +..|+|.|+.| .|+.+|.+|
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~---------------~qrLif~Gk~L-~d~~tl~dy 80 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN---------------SLRFLFEGQRI-ADNHTPKEL 80 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GEEEEETTEEC-CTTCCHHHH
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChh---------------hEEEEECCeEc-CCCCCHHHC
Confidence 34667999999999999999999999999999999999765444 23899999766 688999999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
||.+|++|+++.++.
T Consensus 81 ~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 81 GMEEEDVIEVYQEQT 95 (97)
T ss_dssp TCCTTCEEEEEESSS
T ss_pred CCCCCCEEEEEEecC
Confidence 999999999998764
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=1.5e-12 Score=94.66 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=66.6
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCc-chhhhc
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDEN-SALQDC 140 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~-~tL~dy 140 (178)
....|.|+|+..+| .+.|.|++++||.+||..|+......++++ .|+|.|+.| +|+ .+|.+|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~L-~D~~~tL~~y 74 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRM---------------QLYYSGIEL-ADDYRNLNEY 74 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTE---------------EEEETTEEE-CCTTSBHHHH
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHE---------------EEEECCEEC-CCCcccHHHC
Confidence 34569999999888 899999999999999999999976555533 799999755 566 999999
Q ss_pred CCCCCCEEEEEeeeec
Q 030379 141 GVRNNSQVQFVPFVLS 156 (178)
Q Consensus 141 GIkdgd~L~F~~rl~~ 156 (178)
||++|++|+++.++..
T Consensus 75 gI~~gstl~lv~r~~g 90 (94)
T 2kan_A 75 GITEFSEIVVFLKSIN 90 (94)
T ss_dssp TCCTTEEEEEEECCCS
T ss_pred CCCCCCEEEEEEeCCC
Confidence 9999999999988754
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=94.73 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=63.6
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
....|+|+|+. |+.+.+.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~L-~D~~tL~~y~ 77 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQ---------------VVLLAGAPL-EDEATLGQCG 77 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGC---------------EEEETTEEC-CTTSBHHHHT
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHE---------------EEEECCEEC-CCCCcHHHCC
Confidence 34569999987 89999999999999999999999987655533 789999755 7889999999
Q ss_pred CCCCCEEEEEeeee
Q 030379 142 VRNNSQVQFVPFVL 155 (178)
Q Consensus 142 Ikdgd~L~F~~rl~ 155 (178)
|++|++|+++.|++
T Consensus 78 I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 78 VEALTTLEVAGRML 91 (93)
T ss_dssp CCSSCEEEEECCCC
T ss_pred CCCCCEEEEEEecC
Confidence 99999999998875
No 36
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=1.1e-12 Score=96.21 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=64.7
Q ss_pred ceEEEEEccCC----ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 65 AMRISILKLDG----TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 65 AMkLtV~k~dg----~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
.|+|+|+...+ +.+.|+|+.++||.|||..|+......++++ .|+|.|+.|.||.++|.+|
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~gk~L~D~~~tL~~y 71 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEA---------------QIVYMEQLLTDDHCSLGSY 71 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGB---------------CEEETTEEECCSSSBHHHH
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHe---------------EEEECCEECCCCcccHHHC
Confidence 49999988654 6899999999999999999999987665543 6899998775555899999
Q ss_pred CCCCCCEEEEEeeeec
Q 030379 141 GVRNNSQVQFVPFVLS 156 (178)
Q Consensus 141 GIkdgd~L~F~~rl~~ 156 (178)
||++|++|+++.+.+.
T Consensus 72 gI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 72 GLKDGDMVVLLQKDNV 87 (102)
T ss_dssp TCCTTEEEEECBCCCC
T ss_pred CCCCCCEEEEEECCCC
Confidence 9999999999987643
No 37
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.3e-12 Score=96.36 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=66.9
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..+..|+|+|+..+|+.+.+.|+.++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~L-~D~~tL~~y 82 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQ---------------RWFFSGRPL-TDKMKFEEL 82 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTC---------------EEEETTEEC-CTTSHHHHC
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccE---------------EEEECCEEC-CCCCcHHHc
Confidence 3567799999999999999999999999999999999876554532 799999754 789999999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
||++|++|+++.+..
T Consensus 83 gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 83 KIPKDYVVQVIVSQP 97 (106)
T ss_dssp CCSSSCEEEEECCCS
T ss_pred CCCCCCEEEEEEeCC
Confidence 999999999987653
No 38
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=94.59 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=66.1
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
...|+|+|+.. |..+.|.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~L-~D~~tL~~~gI 85 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQL---------------VLIFAGKIL-KDQDTLSQHGI 85 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGE---------------EEEETTEEE-CTTCCTGGGTC
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhE---------------EEEECCEEC-CCcCcHHHcCC
Confidence 45699999888 88999999999999999999999987555533 789999755 78899999999
Q ss_pred CCCCEEEEEeeeec
Q 030379 143 RNNSQVQFVPFVLS 156 (178)
Q Consensus 143 kdgd~L~F~~rl~~ 156 (178)
++|++|+++.+...
T Consensus 86 ~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 86 HDGLTVHLVIKTQN 99 (101)
T ss_dssp CTTCEEEEEECCSS
T ss_pred CCCCEEEEEEcCCC
Confidence 99999999887643
No 39
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=1.3e-12 Score=93.81 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=64.1
Q ss_pred CceEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHh--ccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 64 SAMRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKV--NDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 64 ~AMkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~--~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
..|+|+|+..+|. .+.|.|++++||.+||+.|+... ...+++| .|+|.|+.| +|+.+|.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Q---------------rLi~~Gk~L-~D~~tL~~ 69 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQ---------------RLIYSGKLL-LDHQCLRD 69 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTC---------------EEEETTEEC-CSSSCHHH
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHe---------------EEEECCEEC-cCcCCHHH
Confidence 4599999999998 56677779999999999999987 4434432 799999755 67899999
Q ss_pred c--CCCCCCEEEEEeeeec
Q 030379 140 C--GVRNNSQVQFVPFVLS 156 (178)
Q Consensus 140 y--GIkdgd~L~F~~rl~~ 156 (178)
| ||++|++||++.+++.
T Consensus 70 ~~~~i~~~~~i~lv~~~~g 88 (93)
T 1wgd_A 70 LLPKQEKRHVLHLVCNVKS 88 (93)
T ss_dssp HSCSSSCSEEEEEECCCCC
T ss_pred HhcCCCCCCEEEEEeCCCC
Confidence 9 9999999999988764
No 40
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=1.2e-12 Score=94.19 Aligned_cols=73 Identities=21% Similarity=0.119 Sum_probs=62.6
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+.+.|.|+.+.||.+||..|+... +.+ .+|+|.|+.|.|++.+|.+|||+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~---------------qrLi~~Gk~L~D~~~tL~~y~i~ 67 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQ---------------MKLIYQGRLLQDPARTLSSLNIT 67 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTT---------------CEEEETTEECCCSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCc---------------EEEEECCEEccCCcCCHHHcCCC
Confidence 459999999999999999999999999999999875 342 27999997664443999999999
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+|++||++.+.
T Consensus 68 ~g~~i~l~~~~ 78 (95)
T 1wia_A 68 NNCVIHCHRSP 78 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCCEEEEEECC
Confidence 99999998765
No 41
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=9.7e-13 Score=94.57 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=65.3
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+.. |+.+.|.|+.++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||+
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk~L-~D~~tL~~~gi~ 78 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRL---------------VLIFTGKIL-RDQDILSQRGIL 78 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTB---------------CCEETTEEC-CTTSCHHHHTCC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCEEC-CCcCCHHHCCCC
Confidence 4599999888 99999999999999999999999986555532 688999655 788999999999
Q ss_pred CCCEEEEEeeeec
Q 030379 144 NNSQVQFVPFVLS 156 (178)
Q Consensus 144 dgd~L~F~~rl~~ 156 (178)
+|++|+++.++..
T Consensus 79 ~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 79 DGSTVHVVVRSHS 91 (96)
T ss_dssp TTEEEECCBCCSS
T ss_pred CCCEEEEEEeCCC
Confidence 9999999887754
No 42
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.37 E-value=3.3e-12 Score=98.81 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=75.5
Q ss_pred CCCCCCHHHHH----HHHh--hh-cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccc
Q 030379 45 VPKKPTLSDVD----TLIS--LE-MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHV 117 (178)
Q Consensus 45 lp~~~t~~ev~----~~Ia--le-~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~V 117 (178)
|..+.|+++.. +.|- +. ....|.|+|+..+|+.+.+.|+++.||.+||..|+......+++
T Consensus 54 L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~------------ 121 (159)
T 3rt3_B 54 LQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL------------ 121 (159)
T ss_dssp CCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG------------
T ss_pred CCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH------------
Confidence 55566776653 1111 11 34569999999999999999999999999999999997655553
Q ss_pred cceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeeecC
Q 030379 118 WANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVLSK 157 (178)
Q Consensus 118 W~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~~~ 157 (178)
.+|+|+|+. ++|+.+|.+|||++|++|+++.|++.-
T Consensus 122 ---q~L~~~G~~-L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 122 ---FWLTFEGKP-LEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp ---EEEEETTEE-CCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred ---EEEEECCee-cCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 379999965 478899999999999999999998654
No 43
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.35 E-value=3.1e-12 Score=94.71 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCceEEEEEccCCceEEE--EeCCCCcHHHHHHHH-HHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 63 GSAMRISILKLDGTSFDV--AVMNSATVKDLKLAI-KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V--~V~~sATV~DLKkAI-~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
...|+|+|+.++|+.|++ .|++++||++||..| +......+++| .|+|.|+. ++|+.+|.+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~Q---------------rLi~~Gk~-L~D~~tL~d 80 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEI---------------KLLLKGKV-LHDNLFLSD 80 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGE---------------EEEETTEE-ECTTCBGGG
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhE---------------EEEECCEE-CcCcCCHHH
Confidence 466999999999998776 566999999999999 66544334432 79999964 578899999
Q ss_pred cCC-CCCCEEEEEe
Q 030379 140 CGV-RNNSQVQFVP 152 (178)
Q Consensus 140 yGI-kdgd~L~F~~ 152 (178)
||| ++|++|+++.
T Consensus 81 y~I~~~g~ti~lmv 94 (98)
T 4a20_A 81 LKVTPANSTITVMI 94 (98)
T ss_dssp SCCBTTBCEEEEEE
T ss_pred cCcCCCCCEEEEEE
Confidence 999 9999999875
No 44
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.33 E-value=6.3e-12 Score=93.27 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCceEEEEEcc---CCceEEEEeCC-CCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhh
Q 030379 63 GSAMRISILKL---DGTSFDVAVMN-SATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 138 (178)
Q Consensus 63 G~AMkLtV~k~---dg~~~~V~V~~-sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~ 138 (178)
-..|.|+|+.. +|+.+.+.|++ ++||.+||..|+......+.++ .|+|.|+ +++|+.+|.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Q---------------rL~~~Gk-~L~D~~tL~ 88 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQ---------------KLSGKAG-FLKDNMSLA 88 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTS---------------EEECSSS-BCCTTSBTT
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHe---------------EEEECCE-ECCCCCcHH
Confidence 35699999888 88999999998 9999999999999986555533 7899996 567899999
Q ss_pred hcCCCCCCEEEEEeeeec
Q 030379 139 DCGVRNNSQVQFVPFVLS 156 (178)
Q Consensus 139 dyGIkdgd~L~F~~rl~~ 156 (178)
+|||++|++|+++.+++.
T Consensus 89 ~y~I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 89 HYNVGAGEILTLSLRERS 106 (111)
T ss_dssp TTTCSSSCEEEEECSSCC
T ss_pred HCCCCCCCEEEEEEEcCC
Confidence 999999999999988753
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=4e-12 Score=93.49 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=65.7
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+..+|+ +.|.|+.+.||.+||..|+......+.++ .|+|.|+. ++|+.+|.+|||+
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~-L~D~~tL~~~gi~ 78 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQL---------------VLIFAGKI-LKDPDSLAQCGVR 78 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTE---------------EEEETTEE-CCTTSCHHHHTCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhE---------------EEEECCEE-CCCcCcHHHcCCC
Confidence 3599999999886 79999999999999999999986554432 78999964 5788999999999
Q ss_pred CCCEEEEEeeeecC
Q 030379 144 NNSQVQFVPFVLSK 157 (178)
Q Consensus 144 dgd~L~F~~rl~~~ 157 (178)
+|++|+++.+++..
T Consensus 79 ~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 79 DGLTVHLVIKRQHR 92 (106)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCC
Confidence 99999999887654
No 46
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.33 E-value=4.1e-12 Score=101.55 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=67.1
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.|.|++++||.+||..|+......+.+| .|+|.|+.| +|+.+|.+|||++|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~L-~D~~tL~~y~I~~g 64 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNIQKE 64 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTE---------------EEEETTEEC-CTTSBGGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHE---------------EEEECCccc-cCcCcHHHcCCCCC
Confidence 89999999999999999999999999999999987555533 799999755 78999999999999
Q ss_pred CEEEEEeeeec
Q 030379 146 SQVQFVPFVLS 156 (178)
Q Consensus 146 d~L~F~~rl~~ 156 (178)
++|+++.|++.
T Consensus 65 stI~Lvlrl~G 75 (169)
T 3l0w_B 65 STLHLVLRLRG 75 (169)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEEecc
Confidence 99999999864
No 47
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=5.8e-12 Score=96.34 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=64.7
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
...|+|+|+.. |+.+.|.|+.+.||.+||..|+......+.+ ..|+|.|+.| +|+.+|.+|||
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---------------QrLi~~Gk~L-~D~~tL~dygI 92 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQ---------------LVLIFAGKIL-KDQDTLIQHGI 92 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSS---------------EEEEETTEEE-STTSCGGGTTC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcce---------------EEEEECCEEc-CCCCCHHHcCC
Confidence 35699999988 9999999999999999999999998654443 2799999755 78899999999
Q ss_pred CCCCEEEEEeeeec
Q 030379 143 RNNSQVQFVPFVLS 156 (178)
Q Consensus 143 kdgd~L~F~~rl~~ 156 (178)
++|++|+++.+...
T Consensus 93 ~~gstI~lv~~~~g 106 (125)
T 1j8c_A 93 HDGLTVHLVIKRDP 106 (125)
T ss_dssp SSSEEEEEEEC---
T ss_pred CCCCEEEEEeccCC
Confidence 99999999988753
No 48
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.4e-12 Score=97.31 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=64.1
Q ss_pred ceEEEEE-ccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 65 AMRISIL-KLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 65 AMkLtV~-k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
.|+|.|+ ..+++.+.|.++.++||+|||.+|+..+.-.+++ .||+|+|+.| +|++||.+|||+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~---------------qrLIy~GKiL-KD~eTL~~~gIk 78 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSV---------------LQIRYSGKIL-KNNETLVQHGVK 78 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTT---------------EEEEETTEEE-CSSCCHHHHSCC
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHH---------------EEEEECCeEc-CCcchHHHcCCC
Confidence 3788886 7778899999999999999999999998654443 3899999755 889999999999
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+|.+||++.+=
T Consensus 79 ~g~TIhLvi~s 89 (118)
T 2daf_A 79 PQEIVQVEIFS 89 (118)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCEEEEEEec
Confidence 99999999875
No 49
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.9e-12 Score=92.59 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=58.0
Q ss_pred eEEEEEccCCceE--EE-EeCCCCcHHHHHHHHHHHh-ccccccccCccccccccccceeEEecC--CccccCCcchhhh
Q 030379 66 MRISILKLDGTSF--DV-AVMNSATVKDLKLAIKKKV-NDMEQSNLGHRHISWKHVWANYCLSHQ--NQKLLDENSALQD 139 (178)
Q Consensus 66 MkLtV~k~dg~~~--~V-~V~~sATV~DLKkAI~~~~-~~~~~r~~g~~~ISW~~VW~~~~L~~~--g~kLldD~~tL~d 139 (178)
|+|+|+.+.|+.+ .| +|++++||.+||+.|++.. ..+|.|| .|+|. |+ .++|+.+|.+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~Q---------------rL~~~~~Gk-~L~D~~tL~~ 74 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQ---------------SLRLDPKGK-SLKDEDVLQK 74 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTC---------------CEESSTTSC-CCCTTCBTTT
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHe---------------EEEecCCCc-CcCCCCCHHH
Confidence 9999999998775 58 8999999999999999964 4445543 45554 86 4578999999
Q ss_pred cCCCCCCEEEEE
Q 030379 140 CGVRNNSQVQFV 151 (178)
Q Consensus 140 yGIkdgd~L~F~ 151 (178)
|||++|++|+|+
T Consensus 75 y~i~~~stl~~K 86 (88)
T 2dzj_A 75 LPVGTTATLYFR 86 (88)
T ss_dssp SSCCSEEEEEEC
T ss_pred cCCCCCCEEEEE
Confidence 999999999986
No 50
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.2e-12 Score=96.39 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred hhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
++-+..|+|+|+. +|+.+.|.|++++||.+||..|+......+.+| .|+|.|+ +++|+.+|.+
T Consensus 23 l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~~ 85 (101)
T 3m63_B 23 FQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQ---------------RLIYSGK-ILKDDQTVES 85 (101)
T ss_dssp ------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTC---------------CEEETTE-ECCTTSBTTT
T ss_pred ccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHE---------------EEEECCE-ECCCcCcHHH
Confidence 3445567888976 899999999999999999999999987655533 6899996 5578999999
Q ss_pred cCCCCCCEEEEEee
Q 030379 140 CGVRNNSQVQFVPF 153 (178)
Q Consensus 140 yGIkdgd~L~F~~r 153 (178)
|||++|++|+++.+
T Consensus 86 ~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 86 YHIQDGHSVHLVKS 99 (101)
T ss_dssp TTCCTTEEEEECCC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999998753
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.30 E-value=8.6e-12 Score=94.43 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=64.7
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+|+..+|+.+.+.|++++||.|||.+|+......+.++ .|+|.|+.| +|+.+|.+|||++|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q---------------~L~~~g~~L-~d~~tL~~~~i~~~ 64 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNIQKE 64 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEEC-CTTSBTGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHe---------------EEEECCeEC-cCcccHHHhccCCC
Confidence 89999999999999999999999999999999987655532 789999755 78999999999999
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
++|+++.+.
T Consensus 65 ~~l~l~~~~ 73 (152)
T 3b08_A 65 STLHLVLRL 73 (152)
T ss_dssp CEEEEEECC
T ss_pred CeeEEEeec
Confidence 999998775
No 52
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=8.7e-12 Score=89.09 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=62.7
Q ss_pred CceEEEEEccCCceEEEEeCCC-----CcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhh
Q 030379 64 SAMRISILKLDGTSFDVAVMNS-----ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 138 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~s-----ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~ 138 (178)
..|+|+|+. .|..+.|.|+.+ +||.|||..|+......+.+| .|+|.|+.|.||+.+|.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~q---------------rL~~~Gk~L~D~~~~L~ 69 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQ---------------KLIFKGKSLKEMETPLS 69 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTC---------------EEEETTEEECCSSSBHH
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHE---------------EEEECCeecCCCcccHH
Confidence 359999976 588899999885 999999999999987655543 79999987765577999
Q ss_pred hcCCCCCCEEEEEeee
Q 030379 139 DCGVRNNSQVQFVPFV 154 (178)
Q Consensus 139 dyGIkdgd~L~F~~rl 154 (178)
+|||++|++|+++..-
T Consensus 70 ~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 70 ALGIQDGCRVMLIGKK 85 (92)
T ss_dssp HHTCCSSEEEEEESCC
T ss_pred HCCCCCCCEEEEEecC
Confidence 9999999999987643
No 53
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=6.3e-12 Score=94.07 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=60.4
Q ss_pred EEEEEccC----CceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 67 RISILKLD----GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 67 kLtV~k~d----g~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
+|.|+..+ ++.++|+|++++||.+||..|+......+.. .+|+|+|+. ++|+.+|.+|||
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~q---------------QrLI~~GKi-L~D~~TL~~y~I 80 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENY---------------IKIVINKKQ-LQLGKTLEEQGV 80 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTT---------------CEEEETTEE-CCTTSBHHHHTC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHH---------------eEEEeCCeE-CCCCCcHHHcCC
Confidence 67777777 7789999999999999999999998754442 289999964 578899999999
Q ss_pred CCCCEEEEEeeeec
Q 030379 143 RNNSQVQFVPFVLS 156 (178)
Q Consensus 143 kdgd~L~F~~rl~~ 156 (178)
++|++| .+-+++.
T Consensus 81 ~~gsti-~vl~lrg 93 (100)
T 1wju_A 81 AHNVKA-MVLELKQ 93 (100)
T ss_dssp CSSEEE-EEECCCC
T ss_pred CCCCEE-EEEEECC
Confidence 999999 5555543
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=97.34 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=63.9
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|.|.|+..+|+.+.+.|+++.||.+||..|+......+..| +|+|.|+.| +|+.+|.+|||+
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q---------------~L~~~g~~L-~D~~tL~~y~i~ 158 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNIQ 158 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------CEEETTEEC-CTTSBSGGGTCC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeE---------------EEEECCccC-CCCCcHHHhCCC
Confidence 4488889889999999999999999999999999986555532 789999755 789999999999
Q ss_pred CCCEEEEEeeee
Q 030379 144 NNSQVQFVPFVL 155 (178)
Q Consensus 144 dgd~L~F~~rl~ 155 (178)
+|++|+++.|++
T Consensus 159 ~g~tl~l~~rlr 170 (172)
T 3u30_A 159 KESTLHLVLRLR 170 (172)
T ss_dssp TTCEEEECC---
T ss_pred CCCEEEEEEecC
Confidence 999999998875
No 55
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.29 E-value=1.2e-11 Score=91.66 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=62.5
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
.-|.|.|+.+.|+++.|.|.++.||.+||+.|+.+....++ +..|+|.|+. ++|..+|.||||.
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~---------------qQrLif~Gk~-LkD~~TL~dY~I~ 83 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPN---------------KIVLQKGGSV-LKDHISLEDYEVH 83 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGG---------------GEEEEETTEE-CCTTSBTGGGTCC
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHH---------------HEEEEeCCEE-ccCcCCHHHcCCC
Confidence 44899999999999999999999999999999999765544 2379999965 5789999999999
Q ss_pred CCCEEEEE
Q 030379 144 NNSQVQFV 151 (178)
Q Consensus 144 dgd~L~F~ 151 (178)
||++|+..
T Consensus 84 dgstLhL~ 91 (93)
T 3plu_A 84 DQTNLELY 91 (93)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998763
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.29 E-value=1.1e-11 Score=95.83 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=64.5
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe-c-CCccccCCcchhhhcCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS-H-QNQKLLDENSALQDCGV 142 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~-~-~g~kLldD~~tL~dyGI 142 (178)
+|+|+|+..+|+.+.+.|++++||.+||..|+......+++| .|+ | .|+.| +|+.+|.+|||
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q---------------rL~~~~~g~~L-~d~~tL~~y~i 65 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQ---------------RLAVHPSGVAL-QDRVPLASQGL 65 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGE---------------EEEEETTCCBC-CTTSCGGGGTC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHE---------------EEEEcCCCCCC-CCCCCHHHcCC
Confidence 499999999999999999999999999999999987666543 677 8 68655 89999999999
Q ss_pred CCCCEEEEEee
Q 030379 143 RNNSQVQFVPF 153 (178)
Q Consensus 143 kdgd~L~F~~r 153 (178)
++|++|+++.+
T Consensus 66 ~~~~~l~l~~~ 76 (159)
T 3rt3_B 66 GPGSTVLLVVD 76 (159)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEcc
Confidence 99999999987
No 57
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.6e-11 Score=92.13 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=67.8
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
...+|.|+..+|+.+.+.|++++||.+||..|+......+.++ .|+|.|+.| +|+.+|.+|||+
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk~L-~D~~tL~~ygI~ 71 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIWAGKQL-EDGRTLSDYNIQ 71 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEEC-CTTCBTTTTTCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEECCEEC-CCCCcHHHCCCC
Confidence 4579999999999999999999999999999999987655533 789999755 788999999999
Q ss_pred CCCEEEEEeeeec
Q 030379 144 NNSQVQFVPFVLS 156 (178)
Q Consensus 144 dgd~L~F~~rl~~ 156 (178)
+|++|+++.++..
T Consensus 72 ~gstI~l~~~~~G 84 (114)
T 2kdi_A 72 RESTLHLVLRLRG 84 (114)
T ss_dssp SSCEEEEEECCCS
T ss_pred CCCEEEEEEEcCC
Confidence 9999999988854
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=96.18 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=67.3
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
....|.|+|+..+|+.+.|.|++++||.+||..|+......+.+| .|+|.|+. ++|+.+|.+||
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q---------------rL~~~g~~-L~d~~tL~~~~ 80 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYN 80 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEE-CCTTCBTGGGT
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEECCcc-ccccCCHhHcC
Confidence 345699999999999999999999999999999999987655543 78999964 57899999999
Q ss_pred CCCCCEEEEEeeee
Q 030379 142 VRNNSQVQFVPFVL 155 (178)
Q Consensus 142 Ikdgd~L~F~~rl~ 155 (178)
|++|++|+++.++.
T Consensus 81 i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 81 IQKESTLHLVLRLR 94 (172)
T ss_dssp CCTTCEEEEEECCC
T ss_pred Ccccceeeeeeccc
Confidence 99999999998764
No 59
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.28 E-value=1.1e-11 Score=101.53 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=67.1
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|+|+..+|+.+.|.|++++||.+||..|+......+++| .|+|.|+. ++|+.+|.+|||++|
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~Q---------------rLi~~Gk~-L~D~~tL~dygI~~g 169 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYNIQKE 169 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------CEEETTEE-CCTTCBGGGGTCCTT
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHE---------------EEEECCEE-CCCCCCHHHCCCCCC
Confidence 99999999999999999999999999999999987655533 68999965 578899999999999
Q ss_pred CEEEEEeeeec
Q 030379 146 SQVQFVPFVLS 156 (178)
Q Consensus 146 d~L~F~~rl~~ 156 (178)
++|+++.|++.
T Consensus 170 stI~LvlrlrG 180 (189)
T 3q3f_A 170 STLHLVLRLRG 180 (189)
T ss_dssp CEEEECCCCCC
T ss_pred CEEEEEEEcCC
Confidence 99999998865
No 60
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.27 E-value=3.6e-13 Score=102.60 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|+|+..+|+.+.|.|++++||.+||..|+......+++| .|+|.|+.| +|+.+|.+|||.+|
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~L-~D~~tL~~~~I~~g 64 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNIQKE 64 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHE---------------EEEECCEEC-CCCCchhhhccCCC
Confidence 88999999999999999999999999999999876555532 688999654 78999999999999
Q ss_pred CEEEEEeeeec
Q 030379 146 SQVQFVPFVLS 156 (178)
Q Consensus 146 d~L~F~~rl~~ 156 (178)
++|+++.++..
T Consensus 65 sti~l~~rl~G 75 (128)
T 3u5e_m 65 STLHLVLRLRG 75 (128)
T ss_dssp -----------
T ss_pred CEEEEEEEcCC
Confidence 99999998854
No 61
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.27 E-value=1.8e-11 Score=87.11 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=60.4
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
+..+.+.+.+|+.+.|.|++++||.+||..|+......+.++ .|+|.|+. ++|+.+|.+|||++
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk~-L~D~~tL~~~gi~~ 74 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQ---------------KLIFKGKV-LVETSTLKQSDVGS 74 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTC---------------EEEETTEE-CCTTCBTTTTTCCT
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEECCeE-CCCcCCHHHCCCCC
Confidence 444556688999999999999999999999999987655543 68899965 47889999999999
Q ss_pred CCEEEEEe
Q 030379 145 NSQVQFVP 152 (178)
Q Consensus 145 gd~L~F~~ 152 (178)
|++|+++.
T Consensus 75 g~~l~l~~ 82 (85)
T 2kd0_A 75 GAKLMLMA 82 (85)
T ss_dssp TEEEEEEC
T ss_pred CCEEEEEE
Confidence 99998864
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.26 E-value=9.9e-12 Score=89.22 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=62.1
Q ss_pred CceEEEEEccCCceEEE-EeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe---cCCccccCCcchhhh
Q 030379 64 SAMRISILKLDGTSFDV-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS---HQNQKLLDENSALQD 139 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V-~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~---~~g~kLldD~~tL~d 139 (178)
..|+|+|+ ..|+.+.| +|++++||.|||..|+......+++| +|+ |.|+. ++|+.+|.+
T Consensus 6 ~~m~i~Vk-~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~Q---------------kLi~~k~~Gk~-L~D~~~L~~ 68 (90)
T 1v5t_A 6 SGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQ---------------KLLGLKVKGKP-AENDVKLGA 68 (90)
T ss_dssp CSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTC---------------EEESCEETTEE-CCTTSBHHH
T ss_pred ceEEEEEE-ECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHe---------------EEEeeccCCcC-cCCCCCHHH
Confidence 35999996 47999999 99999999999999999987766654 688 99964 578899999
Q ss_pred cCCCCCCEEEEEe
Q 030379 140 CGVRNNSQVQFVP 152 (178)
Q Consensus 140 yGIkdgd~L~F~~ 152 (178)
|||++|++|+++.
T Consensus 69 ~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 69 LKLKPNTKIMMMG 81 (90)
T ss_dssp HTCCTTEEEEEEC
T ss_pred cCCCCCCEEEEEe
Confidence 9999999998864
No 63
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-11 Score=93.11 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=66.0
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccc-cccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM-EQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~-~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
.+..|.|+|+..+|+.++++|++++||++||..|+..++.. .+ |. .--..+.+|+|.|+.| +|+.+|.+|
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke---~i-----p~~~~~qrLIy~GK~L-eD~~TL~~y 84 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEE---EQ-----VSSPNILRLIYQGRFL-HGNVTLGAL 84 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCC---CT-----TCCGGGEEEESSSSEE-ESSCBTGGG
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCccccc---CC-----CCChHHEEEEECCcCC-CCCCcHHHc
Confidence 34569999999999999999999999999999999865421 00 00 0002356899999755 788999999
Q ss_pred CCCCCC--EEEEEeeeec
Q 030379 141 GVRNNS--QVQFVPFVLS 156 (178)
Q Consensus 141 GIkdgd--~L~F~~rl~~ 156 (178)
||..|+ +|+++.|+..
T Consensus 85 ~I~~~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 85 KLPFGKTTVMHLVARETL 102 (125)
T ss_dssp CCCTTSEEEEEEEECSCC
T ss_pred CCCCCCceEEEEEecCCC
Confidence 999887 4777777754
No 64
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.25 E-value=1.4e-11 Score=91.33 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=62.4
Q ss_pred CceEEEEEccCCceEEEEeC-CCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCc-----------cc-
Q 030379 64 SAMRISILKLDGTSFDVAVM-NSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQ-----------KL- 130 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~-~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~-----------kL- 130 (178)
..|.|.|+..+|.. .|+|+ +++||.|||..|+..+...+..| +|++.+. .|
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~Q---------------rL~~~~~~~~~k~~~~~~~l~ 69 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQ---------------TLSTNRNLLLAKSPSDFLAFT 69 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTC---------------CCBSSGGGGTCCSHHHHTTCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccC---------------EEEECCccccccCcccccccc
Confidence 34999999999977 78999 99999999999999987655532 5777776 34
Q ss_pred --cCCcchhhhcCCCCCCEEEEEee
Q 030379 131 --LDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 131 --ldD~~tL~dyGIkdgd~L~F~~r 153 (178)
++|+++|.+|||++|++||++..
T Consensus 70 ~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 70 DMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp SSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred ccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 68999999999999999998765
No 65
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=1.7e-11 Score=89.12 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=61.1
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
..|+|+|+ .+|+.+.|.|+.++||.|||..|+......+++| +|+|.|+.| +|. +|.+|||+
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~Q---------------rL~~~Gk~L-dd~-tL~~~~i~ 77 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQ---------------KVMYKGLVP-EDK-TLREIKVT 77 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTC---------------CCBSSSBCC-SSS-BHHHHCCC
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe---------------EEEECCeeC-CcC-cHHHCCCC
Confidence 35999996 6799999999999999999999999987666644 688999765 554 99999999
Q ss_pred CCCEEEEEee
Q 030379 144 NNSQVQFVPF 153 (178)
Q Consensus 144 dgd~L~F~~r 153 (178)
+|++|+++..
T Consensus 78 ~g~~i~lv~~ 87 (95)
T 1v86_A 78 SGAKIMVVGS 87 (95)
T ss_dssp TTEEEEECCS
T ss_pred CCCEEEEEec
Confidence 9999988653
No 66
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=7.3e-12 Score=90.77 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=58.9
Q ss_pred eEEEEEccCCceEEEEeC--CCCcHHHHHHHH-HHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 66 MRISILKLDGTSFDVAVM--NSATVKDLKLAI-KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~--~sATV~DLKkAI-~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
|+|+|+..+|+.|.|.|+ +++||.+||..| +......+++ .+|+|.|+ +++|+.+|++|||
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~---------------QrLi~~Gk-~L~D~~tL~~y~I 65 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISE---------------IKLLLKGK-VLHDNLFLSDLKV 65 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTT---------------EEEEETTE-ECCTTCBHHHHCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHH---------------EEEEECCE-ECcCcCCHHHcCC
Confidence 899999999998877654 999999999999 7765543442 28999996 5578999999999
Q ss_pred -CCCCEEEEEee
Q 030379 143 -RNNSQVQFVPF 153 (178)
Q Consensus 143 -kdgd~L~F~~r 153 (178)
.+|++|+..-+
T Consensus 66 ~~~~stl~v~~~ 77 (87)
T 2lxa_A 66 TPANSTITVMIK 77 (87)
T ss_dssp CGGGCEEEEEEC
T ss_pred CCCCCEEEEEcC
Confidence 69999887643
No 67
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.25 E-value=7.2e-13 Score=105.10 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=0.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|+|+..+|+.+.|.|++++||.+||..|+......+++| .|+|.|+.| +|+.+|.+|||.+|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~L-~D~~tL~dygI~~g 64 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYNIQKE 64 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCEEc-cccCcHHHcCCCCC
Confidence 88999999999999999999999999999999886655533 689999755 78899999999999
Q ss_pred CEEEEEeeeecCC
Q 030379 146 SQVQFVPFVLSKG 158 (178)
Q Consensus 146 d~L~F~~rl~~~~ 158 (178)
++|+++.|+..-+
T Consensus 65 stL~Lvlrl~GGg 77 (152)
T 3u5c_f 65 STLHLVLRLRGGG 77 (152)
T ss_dssp -------------
T ss_pred CEEEEEeeccCCC
Confidence 9999999997643
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=1.6e-11 Score=90.78 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=62.8
Q ss_pred ceEEEEEccCC---ceEEEEeCC---------CCcHHHHHHHHHHHh--ccccccccCccccccccccceeEEecCCccc
Q 030379 65 AMRISILKLDG---TSFDVAVMN---------SATVKDLKLAIKKKV--NDMEQSNLGHRHISWKHVWANYCLSHQNQKL 130 (178)
Q Consensus 65 AMkLtV~k~dg---~~~~V~V~~---------sATV~DLKkAI~~~~--~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kL 130 (178)
.|+|+|+..++ ..+.|.|+. ++||.+||+.|+... ...+.+ ...|+|.|+.|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~--------------~qrLi~~Gk~L 77 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPE--------------LIDLIYCGRKL 77 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSS--------------SEEEEETTEEC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhh--------------cEEEEECCeEC
Confidence 48999999999 789999665 599999999999987 444442 02799999755
Q ss_pred cCCcchhhhcCCCCCCEEEEEeeee
Q 030379 131 LDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 131 ldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
+|+.+|.+|||++|++|+++.+..
T Consensus 78 -~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 78 -KDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp -CTTCBHHHHTCCTTCEEEEEESSC
T ss_pred -CCCCcHHHcCCCCCCEEEEEeCCC
Confidence 788999999999999999987754
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.24 E-value=3.5e-11 Score=89.90 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=64.6
Q ss_pred CceEEEEEcc----------CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCC
Q 030379 64 SAMRISILKL----------DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDE 133 (178)
Q Consensus 64 ~AMkLtV~k~----------dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD 133 (178)
..++|.|+.. +|+.+.|.|++++||.+||..|+......+.+| .|+|.|+.| +|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rL~~~Gk~L-~D 87 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQ---------------KLQYEGIFI-KD 87 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTE---------------EEEETTEEE-CT
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHE---------------EEEECCEEC-CC
Confidence 4688888764 477899999999999999999999976555533 799999755 78
Q ss_pred cchhhhcCCCCCCEEEEEeeeec
Q 030379 134 NSALQDCGVRNNSQVQFVPFVLS 156 (178)
Q Consensus 134 ~~tL~dyGIkdgd~L~F~~rl~~ 156 (178)
+.+|.+|||++|++|+++.|++.
T Consensus 88 ~~tL~~y~i~~g~~i~lv~rl~G 110 (115)
T 1we7_A 88 SNSLAYYNMASGAVIHLALKERS 110 (115)
T ss_dssp TSBHHHHTCCSSCEEEEEECCCS
T ss_pred CCCHHHCCCCCCCEEEEEEEcCC
Confidence 89999999999999999988753
No 70
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.23 E-value=4.6e-11 Score=91.19 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=67.8
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccc-cccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM-EQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~-~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
..|.|+|+.++|..++|+|.+++||++||..|+..++.. .+ +.. .=..+.+|+|.|+. ++|+.+|.+|+|
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke--~~p------~p~~qqrLIy~GK~-LeD~~TL~~y~I 85 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEE--EQV------SSPNILRLIYQGRF-LHGNVTLGALKL 85 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSC--CCC------CCTTTEEEEETTEE-ECSSCBTTTTTC
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhccccccc--CCC------CChHHEEEEECCcC-CCCCCcHHHcCC
Confidence 349999999999999999999999999999999965321 00 000 00124589999974 578999999999
Q ss_pred CCCC--EEEEEeeeecCCccccccc
Q 030379 143 RNNS--QVQFVPFVLSKGSGKHSKR 165 (178)
Q Consensus 143 kdgd--~L~F~~rl~~~~~~~~~~~ 165 (178)
..|+ +||++.|+..-......-|
T Consensus 86 ~~~~~~tlhLvlr~~~~~~~~~~~~ 110 (116)
T 1wgh_A 86 PFGKTTVMHLVARETLPEPNSQGQR 110 (116)
T ss_dssp CSSCEEEEEEEECSSCSSSCCSSCC
T ss_pred CCCCceEEEEEccCCCCCCCccccc
Confidence 8875 5788877765444333333
No 71
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-11 Score=89.32 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=59.1
Q ss_pred CceEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHhcc-ccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 64 SAMRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVND-MEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 64 ~AMkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~~~-~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..|+|+|+..+|+ .+.|.|++++||.+||..|+..++- .|.. +.+|+|.|+.| +|+.+|.+|
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~--------------~QrLIy~Gk~L-~D~~tL~~y 86 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK--------------DQRLVYSGRLL-PDHLQLKDI 86 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTT--------------TCCEEETTEEE-CTTSBTHHH
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChh--------------hEEEEECCEEC-CCCCCHHHH
Confidence 4599999999998 5688889999999999999997632 2211 12799999755 788999999
Q ss_pred --CCCCCCEEEEE
Q 030379 141 --GVRNNSQVQFV 151 (178)
Q Consensus 141 --GIkdgd~L~F~ 151 (178)
||.+|++|+++
T Consensus 87 ~~~I~~~~tihLv 99 (99)
T 2kdb_A 87 LRKQDEYHMVHLV 99 (99)
T ss_dssp HTTTCSEEEEEEC
T ss_pred hcCCCCCCEEEeC
Confidence 99999999864
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.19 E-value=3.2e-11 Score=88.01 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=60.9
Q ss_pred CceEEEEEccCCceE-EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 64 SAMRISILKLDGTSF-DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~-~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
..|+|+|+ ..|+.+ +|.|+.++||.|||..|+......+++| +|+|.|+.| +|+ +|.+|||
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~Q---------------kLi~~Gk~L-~D~-tL~~~~I 67 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQ---------------KVMVKGGTL-KDD-DWGNIKM 67 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTS---------------CCEETTEEC-CSS-CCCSCCC
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe---------------EEEECCcCC-CCC-CHHHCCC
Confidence 45999996 578999 6999999999999999999987666644 688999755 566 9999999
Q ss_pred CCCCEEEEEee
Q 030379 143 RNNSQVQFVPF 153 (178)
Q Consensus 143 kdgd~L~F~~r 153 (178)
++|++|+++..
T Consensus 68 ~~g~~i~l~~~ 78 (96)
T 1wgg_A 68 KNGMTVLMMGS 78 (96)
T ss_dssp CSSCEEECCCC
T ss_pred CCCCEEEEEec
Confidence 99999988653
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.16 E-value=1.6e-10 Score=87.16 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=61.3
Q ss_pred eEEEEEccCC--ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC-
Q 030379 66 MRISILKLDG--TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV- 142 (178)
Q Consensus 66 MkLtV~k~dg--~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI- 142 (178)
|+|+|....+ ..+.|.|.+++||++||..|+..+...++.| .|+|.|+ +++|+.+|.+|||
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q---------------Rli~ggk-ll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ---------------QWVIGQR-LARDQETLHSHGVR 88 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-EECTTCBTGGGTCC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHE---------------EEeccCe-EccCcCcHHHcCCC
Confidence 8999988885 6789999999999999999999998777643 4677775 8899999999999
Q ss_pred CCCCEEEEEe
Q 030379 143 RNNSQVQFVP 152 (178)
Q Consensus 143 kdgd~L~F~~ 152 (178)
.+|++||.+.
T Consensus 89 ~~G~t~hL~l 98 (105)
T 4dbg_A 89 QNGDSAYLYL 98 (105)
T ss_dssp STTCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 5999999864
No 74
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.14 E-value=1.4e-10 Score=101.41 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=66.3
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
....|+|+|+.++|+.+.|.|++++||.+||..|+......+++| .|+|.|+.| +|+.+|.+||
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~Q---------------RLi~~Gk~L-~D~~TLsdyg 293 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQL-EDGRTLSDYN 293 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTEEC-CTTSBTGGGT
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEeCCeec-CCCCCHHHcC
Confidence 346699999999999999999999999999999999987655543 799999755 7899999999
Q ss_pred CCCCCEEEEEeeee
Q 030379 142 VRNNSQVQFVPFVL 155 (178)
Q Consensus 142 Ikdgd~L~F~~rl~ 155 (178)
|++|++|+++.|++
T Consensus 294 I~~gstL~LvlRLr 307 (307)
T 3ai5_A 294 IQKESTLHLVLRLR 307 (307)
T ss_dssp CCTTCEEEEEC---
T ss_pred CCCCCEEEEEEeCC
Confidence 99999999998874
No 75
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.11 E-value=6.1e-11 Score=84.28 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=57.6
Q ss_pred eEEEEEccCCceEEEE-eCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC--Ccccc--CCcchhhhc
Q 030379 66 MRISILKLDGTSFDVA-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQKLL--DENSALQDC 140 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~-V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~--g~kLl--dD~~tL~dy 140 (178)
|+|.|+..+|+.. |. |+.++||.|||.+|++.....+.++ .|+|. ++.|. +|+.+|++|
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~q---------------rL~~~~p~k~l~l~~~~~tL~~~ 64 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQ---------------RILVGYPPECLDLSDRDITLGDL 64 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTC---------------CCEESSCCCCCCCCCSSCBTTTS
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccce---------------EEEeCCCCcccccCCCCCCHHHc
Confidence 8899999999764 77 8999999999999999987555532 45554 45452 378999999
Q ss_pred CCCCCCEEEEEee
Q 030379 141 GVRNNSQVQFVPF 153 (178)
Q Consensus 141 GIkdgd~L~F~~r 153 (178)
||.+|++|+++..
T Consensus 65 gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 65 PIQSGDMLIVEED 77 (86)
T ss_dssp SCCTTCEEECCCC
T ss_pred CCCCCCEEEEEeC
Confidence 9999999998754
No 76
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.05 E-value=5.1e-10 Score=86.86 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=67.7
Q ss_pred hcCCceEEEEEccCCceE-EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 61 EMGSAMRISILKLDGTSF-DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~-~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
|-...|.|+|+..+|+.+ ++.|+++.||++||+.|....+...+ +.+. -..+..|+|.|+ .++|+.+|.+
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dke--giP~------~~~qQrLIy~GK-~LeD~~TLsd 82 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKE--NGPK------TVKEVKLISAGK-VLENSKTVKD 82 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCS--SSCC------SGGGEEEEETTE-ECCTTSBGGG
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccc--cCCC------ChhhEEEEECCe-ECcCCCcHHH
Confidence 344789999999999988 79999999999999999876542111 0000 012458999996 5589999999
Q ss_pred cCCCCC------CEEEEEeeeecC
Q 030379 140 CGVRNN------SQVQFVPFVLSK 157 (178)
Q Consensus 140 yGIkdg------d~L~F~~rl~~~ 157 (178)
|+|.+| .++|++.|++.-
T Consensus 83 y~I~~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 83 YRSPVSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp GSCCTTSCTTCCEEEEEEECCCSS
T ss_pred cCCCcCCccCCcEEEEEEeccCCc
Confidence 999999 568888888754
No 77
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=5.2e-10 Score=80.89 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=59.2
Q ss_pred eEEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC---cc---ccCCcchhh
Q 030379 66 MRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN---QK---LLDENSALQ 138 (178)
Q Consensus 66 MkLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g---~k---LldD~~tL~ 138 (178)
++|+|...... .+.+.|+++.||.+||..|+......+.+| .|+|.| +. |++|+.+|.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~q---------------rL~~~~~~g~~~~~l~~D~~tL~ 72 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCM---------------ELELYGADDKFYSKLDQEDALLG 72 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTC---------------BCEEECSSSCEEEECCCSSSBTT
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHe---------------EEEEeCCCCccccccCCCcCCHh
Confidence 78888766554 689999999999999999999987665533 577765 43 568999999
Q ss_pred hcCCCCCCEEEEEe
Q 030379 139 DCGVRNNSQVQFVP 152 (178)
Q Consensus 139 dyGIkdgd~L~F~~ 152 (178)
+|||.+|++||++.
T Consensus 73 ~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 73 SYPVDDGCRIHVID 86 (95)
T ss_dssp SSSCCTTCEEEEBC
T ss_pred HCCCCCCCEEEEEE
Confidence 99999999999875
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.04 E-value=8.7e-10 Score=80.85 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=59.3
Q ss_pred eEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC--Cc---cccCCcchhh
Q 030379 66 MRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQ---KLLDENSALQ 138 (178)
Q Consensus 66 MkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~--g~---kLldD~~tL~ 138 (178)
++|.|....++ .+++.|+++.||.+||..|+....-.+..| .|+|. |+ .|++|+.+|.
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~Q---------------rL~~~~~g~~~~~L~~D~~tL~ 80 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTM---------------KVQVFKGDTCVSTMDNNDAQLG 80 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTE---------------EEEEEETTEEEEECCCTTSBHH
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHe---------------EEEEecCCcccceeCCCCCCHh
Confidence 68888766554 789999999999999999999987655532 68886 44 3668999999
Q ss_pred hcCCCCCCEEEEEe
Q 030379 139 DCGVRNNSQVQFVP 152 (178)
Q Consensus 139 dyGIkdgd~L~F~~ 152 (178)
+|||++|++|+++.
T Consensus 81 ~Y~i~~gstihlvD 94 (95)
T 2kjr_A 81 YYANSDGLRLHVVD 94 (95)
T ss_dssp HHCCSSSCEEEEEE
T ss_pred HCCcCCCCEEEEEC
Confidence 99999999999874
No 79
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.99 E-value=5.2e-10 Score=99.66 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=63.7
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc---cccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN---DMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~---~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..|+|+|+.++|+.|.|.|..+.||.+||+.|+..+. ..+. ..+|+|.|+.| +|+.+|.+|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~---------------~QrLiy~GK~L-~D~~tL~dy 69 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVA---------------GQKLIYAGKIL-SDDVPIRDY 69 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCST---------------EEEEESSSSEE-CSSSBTTTT
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChh---------------heEEEECCeec-CCcCCHHHc
Confidence 3599999999999999999999999999999999642 2223 33899999755 788999999
Q ss_pred CCCCCCEE-EEEeeeec
Q 030379 141 GVRNNSQV-QFVPFVLS 156 (178)
Q Consensus 141 GIkdgd~L-~F~~rl~~ 156 (178)
||++|++| +.+.|.+.
T Consensus 70 gI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 70 RIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCCTTSCEEEEEECCCS
T ss_pred CCCCCCEEEEEEecCCC
Confidence 99999998 67766643
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.99 E-value=2e-09 Score=79.43 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=60.4
Q ss_pred CCc-eEEEEEccCC--ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCc---c---ccCC
Q 030379 63 GSA-MRISILKLDG--TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQ---K---LLDE 133 (178)
Q Consensus 63 G~A-MkLtV~k~dg--~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~---k---LldD 133 (178)
|.+ ++|.|..... ..+++.|+++.||++||..|+....-.+..| .|+|.|+ . |++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q---------------rLi~~g~~g~~~~~L~~D 75 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSM---------------ALELYDDSGSKVAVLSDD 75 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSE---------------EEEEECSSSCBCCCSSGG
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHe---------------EEEEecCCCcccceecCC
Confidence 444 6888876544 3689999999999999999999987655532 7888773 2 4689
Q ss_pred cchhhhcCCCCCCEEEEEe
Q 030379 134 NSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 134 ~~tL~dyGIkdgd~L~F~~ 152 (178)
+.+|.+|||.+|++|+++.
T Consensus 76 ~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 76 SRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp GSCHHHHCCCSCCEEEEEE
T ss_pred cCCHHHCCCCCCCEEEEEe
Confidence 9999999999999999875
No 81
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.99 E-value=1.1e-09 Score=84.33 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=59.6
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC-
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN- 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd- 144 (178)
|=|.| +.....+.+.|.++.||.+||..|+......+..| +|+|+|+ +++|++||.+|||.+
T Consensus 3 vFl~I-kr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQ---------------rLI~~Gk-~LeD~kTL~dy~I~~~ 65 (118)
T 4ajy_B 3 VFLMI-RRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQ---------------RLYKDDQ-LLDDGKTLGECGFTSQ 65 (118)
T ss_dssp EEEEE-EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBTTTTTCCGG
T ss_pred eEEEE-ecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHe---------------EEEeCCe-ECCCcCCHHHcCCCcC
Confidence 33445 34456788899999999999999999987655533 7999995 668999999999999
Q ss_pred ------CCEEEEEeee
Q 030379 145 ------NSQVQFVPFV 154 (178)
Q Consensus 145 ------gd~L~F~~rl 154 (178)
+++|+.+-|.
T Consensus 66 ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 66 TARPQAPATVGLAFRA 81 (118)
T ss_dssp GSBTTBCEEEEEEECC
T ss_pred cccCCCCCEEEEEEec
Confidence 9999999885
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=81.14 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=59.7
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec-CCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH-QNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~-~g~kLldD~~tL~dyGIkd 144 (178)
|-+.+++..|+.++|.|++++||.+||..|+....-.|++| .|+| .+.+| +|+.+|.+|||++
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~Q---------------kLi~~~~gkL-~D~~tLs~~~I~~ 72 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKM---------------LLKGWKTGDV-EDSTVLKSLHLPK 72 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTC---------------CEECCSSSCC-CTTSBHHHHCCCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHe---------------EEEccCCCCC-CCcCCHHHcCCCC
Confidence 77777789999999999999999999999999988777754 4554 33345 7889999999999
Q ss_pred CCEEEEEee
Q 030379 145 NSQVQFVPF 153 (178)
Q Consensus 145 gd~L~F~~r 153 (178)
|++||.+-.
T Consensus 73 gstL~lvl~ 81 (100)
T 2dzm_A 73 NNSLYVLTP 81 (100)
T ss_dssp EEEEEECCS
T ss_pred CCEEEEEec
Confidence 999988543
No 83
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.96 E-value=2.3e-09 Score=82.30 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=59.6
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC-
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR- 143 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk- 143 (178)
.|-|.|++. .+.+.+.|.++.||.+||..|+......+..| +|+|+|+ .++|+.+|.+|||.
T Consensus 2 ~mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~egIP~~qQ---------------rLi~~Gk-~LeD~~TLsdy~I~~ 64 (118)
T 2fnj_B 2 DVFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPPEEQ---------------RLYKDDQ-LLDDGKTLGECGFTS 64 (118)
T ss_dssp EEEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBHHHHTCCT
T ss_pred cEEEEEecC-CEEEEEEeCCcChHHHHHHHHHHHhCCCHHHe---------------EEEECCe-ECCCCCCHHHcCccc
Confidence 466777543 36688999999999999999999987555532 7999996 55899999999999
Q ss_pred ------CCCEEEEEee
Q 030379 144 ------NNSQVQFVPF 153 (178)
Q Consensus 144 ------dgd~L~F~~r 153 (178)
++++|+.+-|
T Consensus 65 ~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 65 QTARPQAPATVGLAFR 80 (118)
T ss_dssp TTSBTTBCEEEEEEEB
T ss_pred ccccCCCCCEEEEEec
Confidence 7999999877
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.95 E-value=2.1e-09 Score=81.40 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=60.4
Q ss_pred ceEEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC---cc---ccCCcchh
Q 030379 65 AMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN---QK---LLDENSAL 137 (178)
Q Consensus 65 AMkLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g---~k---LldD~~tL 137 (178)
.|+|+|....+. .+.+.|++++||.+||..|+......+.++ .|+|.| +. |++|+.+|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~q---------------rL~~~g~~~~~~~~l~~D~~tL 70 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSM---------------RIQLFDGDDQLKGELTDGAKSL 70 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTE---------------EEEEECSSSSEEEECCCCSSBT
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHe---------------EEEEecCCCccccccCCCcCCH
Confidence 478889776554 688999999999999999999987665543 688866 32 46899999
Q ss_pred hhcCCCCCCEEEEEe
Q 030379 138 QDCGVRNNSQVQFVP 152 (178)
Q Consensus 138 ~dyGIkdgd~L~F~~ 152 (178)
.+|||.+|++||++.
T Consensus 71 ~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 71 KDLGVRDGYRIHAVD 85 (122)
T ss_dssp TTTTCCSSEEEEEEE
T ss_pred HHCCCCCCCEEEEEe
Confidence 999999999999886
No 85
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.91 E-value=3.9e-09 Score=76.00 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=56.5
Q ss_pred eEEEEE--ccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec-------CCccccCCcch
Q 030379 66 MRISIL--KLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH-------QNQKLLDENSA 136 (178)
Q Consensus 66 MkLtV~--k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~-------~g~kLldD~~t 136 (178)
++|.|. ......+++.++.+.||.+||..|+....-.+..| .|+| .| ++++|+.+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~Q---------------rLi~~~~~~~~~g-~~l~d~~t 66 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYM---------------QLQLIDDRGITIE-KNMANDKQ 66 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGE---------------EEEEECTTSCEEE-SSCCTTSB
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHE---------------EEEEecCCCCcee-eEcCCCCC
Confidence 455553 23445578999999999999999999987665532 5765 35 57899999
Q ss_pred hhhcCCCCCCEEEEEee
Q 030379 137 LQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 137 L~dyGIkdgd~L~F~~r 153 (178)
|.+|||++|++||++..
T Consensus 67 L~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 67 LGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp GGGGTCCTTCEEEEEEC
T ss_pred HHHCCCCCCCEEEEEeC
Confidence 99999999999999864
No 86
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.90 E-value=3.1e-09 Score=92.78 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=61.2
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe---cCCccccCCcchhhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS---HQNQKLLDENSALQD 139 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~---~~g~kLldD~~tL~d 139 (178)
...|+|+|+ ..|+.++|.|++++||.+||..|+......|++| .|+ |.|+ +++|+.+|.+
T Consensus 3 ~~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~Q---------------kLi~~k~~Gk-~l~D~~~L~~ 65 (320)
T 3shq_A 3 VKEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQ---------------KLLNLKYKGK-TAADNVKISA 65 (320)
T ss_dssp -CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGC---------------EETTCBSSSS-BCCTTSBTTS
T ss_pred CceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe---------------EEeecccCCc-ccCccccHHH
Confidence 456999995 6899999999999999999999999988777754 677 7885 6688999999
Q ss_pred cCCCCCCEEEEEe
Q 030379 140 CGVRNNSQVQFVP 152 (178)
Q Consensus 140 yGIkdgd~L~F~~ 152 (178)
|||++|++|+.+-
T Consensus 66 ~~ik~g~~l~L~g 78 (320)
T 3shq_A 66 LELKPNFKLMMVG 78 (320)
T ss_dssp SCCC--CEEEEEC
T ss_pred cCCCCCCEEEEEc
Confidence 9999999998874
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=1.1e-08 Score=74.82 Aligned_cols=80 Identities=9% Similarity=0.151 Sum_probs=68.0
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.+..|+|.|+..+|+.+.+.|..+.++..|+.+++++....+. ++.|+|+|+.| +++.|+.+|+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~---------------~~rf~FdG~~l-~~~~Tp~dl~ 67 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR---------------QIRFRFDGQPI-NETDTPAQLE 67 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GEEEEETTEEC-CTTCCTTTTT
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcc---------------cEEEEECCEEc-CCCCCHHHcC
Confidence 3567999999999999999999999999999999988754332 45899999877 6779999999
Q ss_pred CCCCCEEEEEeeeecC
Q 030379 142 VRNNSQVQFVPFVLSK 157 (178)
Q Consensus 142 Ikdgd~L~F~~rl~~~ 157 (178)
|.|||+|+++.+...-
T Consensus 68 medgD~Idv~~~~~GG 83 (94)
T 2io1_B 68 MEDEDTIDVFQQQTGG 83 (94)
T ss_dssp CCTTCEEEEEECCEES
T ss_pred CCCCCEEEEEEeccCC
Confidence 9999999999887653
No 88
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.79 E-value=1.7e-08 Score=73.03 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=57.9
Q ss_pred eEEEEEc---cCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC-------ccccCCcc
Q 030379 66 MRISILK---LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN-------QKLLDENS 135 (178)
Q Consensus 66 MkLtV~k---~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g-------~kLldD~~ 135 (178)
++|+|.. .+|..+.+.++.+.||.+||..|++.+...+..+ .|.|.+ ..|.+|..
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q---------------~L~~~~~~~~~~~~~L~~d~~ 74 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSEL---------------LLSYESSKMPGREIELENDLQ 74 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTC---------------EEEEECTTSCSCEEECCCSSS
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHe---------------EEEEEcCCCCceeeccCCCcc
Confidence 6787754 5788899999999999999999999997655532 455442 22668999
Q ss_pred hhhhcCCCCCCEEEEEe
Q 030379 136 ALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 136 tL~dyGIkdgd~L~F~~ 152 (178)
+|.+|||.||++|++..
T Consensus 75 ~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 75 PLQFYSVENGDCLLVRW 91 (97)
T ss_dssp BSGGGTCCTTCEEEEEC
T ss_pred cHhhcCCCCCCEEEEEe
Confidence 99999999999999875
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.78 E-value=3.2e-08 Score=72.11 Aligned_cols=80 Identities=8% Similarity=0.111 Sum_probs=68.0
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
+..|+|.|+..+|+.+.+.|..+.++..|+.|+++.....+ .++.++|+|+.| .+++|..+|++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~---------------~~~rf~FdG~~l-~~~~Tp~dl~m 66 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---------------RQIRFRFDGQPI-NETDTPAQLEM 66 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS---------------TTEEEEETTEEC-CTTCCTTTTTC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc---------------ccEEEEECCEEc-CCCCCHHHcCC
Confidence 56799999999999999999999999999999998865332 256899999877 57789999999
Q ss_pred CCCCEEEEEeeeecCC
Q 030379 143 RNNSQVQFVPFVLSKG 158 (178)
Q Consensus 143 kdgd~L~F~~rl~~~~ 158 (178)
.|||+|.++.....-.
T Consensus 67 edgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 67 EDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CTTEEEEEEECCCCCC
T ss_pred CCCCEEEEEEeccCCc
Confidence 9999999998875543
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.71 E-value=5e-08 Score=67.40 Aligned_cols=70 Identities=9% Similarity=0.181 Sum_probs=61.1
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|.|+..+|+.+.+.|..+.++..|+.|+++.....+. ++.++|+|+.| .+++|..+||+.+|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~---------------~~rf~fdG~~l-~~~~Tp~~l~medg 65 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR---------------QIRFRFDGQPI-NETDTPAQLEMEDE 65 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTT---------------TCEEEETTEEC-CTTCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc---------------eEEEEECCEEc-CCCCCHHHcCCCCC
Confidence 899999999999999999999999999999988654322 45899999877 57789999999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
|+|++.
T Consensus 66 D~Idv~ 71 (72)
T 1wm3_A 66 DTIDVF 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 999875
No 91
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.71 E-value=7.7e-08 Score=69.96 Aligned_cols=79 Identities=9% Similarity=0.143 Sum_probs=66.5
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
+.+..|+|.|+..+|..+.+.|..+.++..|+.|++......+. ++.++|+|+.| .++.|..+|
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~---------------~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR---------------QIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGG---------------GEEEEETTEEC-CTTCCTTTT
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCcc---------------ceEEEECCEEc-CCCCCHHHc
Confidence 35678999999999999999999999999999999988754322 56899999877 678999999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
++.+||+|+++.+..
T Consensus 77 ~medgD~Idv~~~q~ 91 (93)
T 2d07_B 77 EMEDEDTIDVFQQQT 91 (93)
T ss_dssp TCCTTEEEEEEECC-
T ss_pred CCCCCCEEEEEeecc
Confidence 999999999987753
No 92
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.68 E-value=1.3e-07 Score=66.73 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=63.0
Q ss_pred cCCceEEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 62 MGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
.+..|+|.|+..+|. .+.+.|..+.++..|+.++++.....+. ++.++|+|+.| .+++|..+|
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~---------------~~rf~fdG~~l-~~~~Tp~~l 67 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGH---------------KLSFFFDGTKL-SGKELPADL 67 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTC---------------CCEEEETTEEC-CSCCCHHHH
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcc---------------cEEEEECCEEc-CCCCCHHHc
Confidence 356699999999996 8999999999999999999988654322 45899999877 678899999
Q ss_pred CCCCCCEEEEE
Q 030379 141 GVRNNSQVQFV 151 (178)
Q Consensus 141 GIkdgd~L~F~ 151 (178)
|+.|||+|++.
T Consensus 68 ~medgD~Idv~ 78 (79)
T 3a4r_A 68 GLESGDLIEVW 78 (79)
T ss_dssp TCCTTCEEEEE
T ss_pred CCCCCCEEEEe
Confidence 99999999874
No 93
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.66 E-value=3.4e-09 Score=87.18 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.|+|+.++|+.+.++|+++.||.+||..|+......++. ..|+|.|+.| +|+.+|. ++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~q---------------QRLIf~GK~L-eD~~TLs-----~~ 59 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDM---------------MTLVNNGFIA-PNTELVT-----DD 59 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhH---------------EEEEecCeEC-CCCCccc-----CC
Confidence 8899999999999999999999999999999987654442 2799999755 6788998 99
Q ss_pred CEEEEEeeeec
Q 030379 146 SQVQFVPFVLS 156 (178)
Q Consensus 146 d~L~F~~rl~~ 156 (178)
++|+++.|++.
T Consensus 60 STLhLvlRLrG 70 (189)
T 2xzm_9 60 VTYYLSLKLLG 70 (189)
T ss_dssp -----------
T ss_pred CEEEEEEecCC
Confidence 99999999854
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.62 E-value=1.5e-07 Score=70.17 Aligned_cols=79 Identities=9% Similarity=0.138 Sum_probs=67.7
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.+..|+|.|+..+|..+.+.|..+.++..|+.+++......+. ++.|+|+|+.| .++.|..+|+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~---------------~~rf~FdG~~l-~~~~Tp~dl~ 84 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR---------------QIRFRFDGQPI-NETDTPAQLE 84 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTT---------------TSCEESSSSBC-CTTSCTTTTT
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcc---------------eEEEEECCEEc-CCCCCHHHcC
Confidence 4677999999999999999999999999999999988754332 45799999877 6778999999
Q ss_pred CCCCCEEEEEeeeec
Q 030379 142 VRNNSQVQFVPFVLS 156 (178)
Q Consensus 142 Ikdgd~L~F~~rl~~ 156 (178)
+.+||+|+++.+...
T Consensus 85 medgD~Idv~~~q~G 99 (104)
T 1wz0_A 85 MEDEDTIDVFQQQTS 99 (104)
T ss_dssp CCTTEEEEECCCCCC
T ss_pred CCCCCEEEEEEeccC
Confidence 999999999877643
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.57 E-value=1.7e-07 Score=70.76 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=67.6
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.+..|+|.|+..+|..+.+.|..+.++..|+.+++......+. ++.|+|+|+.| .+++|..+|+
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~---------------~~rfiFdG~~L-~~~~Tp~dl~ 86 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRN---------------SVRFLFDGTPI-DETKTPEELG 86 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSS---------------SCEEESSSCBC-CSSSHHHHHH
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc---------------cEEEEECCEEc-CCCCCHHHcC
Confidence 4677999999999999999999999999999999988654322 45899999877 5778999999
Q ss_pred CCCCCEEEEEeeeec
Q 030379 142 VRNNSQVQFVPFVLS 156 (178)
Q Consensus 142 Ikdgd~L~F~~rl~~ 156 (178)
+.+||+|.++.....
T Consensus 87 mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 87 MEDDDVIDAMVEQTG 101 (110)
T ss_dssp CSSEEEEEEECCCCC
T ss_pred CCCCCEEEEEEcccC
Confidence 999999999877643
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.48 E-value=5.6e-07 Score=67.57 Aligned_cols=78 Identities=6% Similarity=0.124 Sum_probs=66.0
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..+..|+|.|+. +|..+.+.|..+.++..|+.+++......+ .++.++|+|+.| .++.|..+|
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~---------------~~~rF~FdG~rl-~~~~Tp~dl 89 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLRFLYDGIRI-QADQTPEDL 89 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG---------------GGEEEEETTEEC-CTTCCTTTT
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc---------------ccEEEEECCeEc-CCCCCHHHc
Confidence 356779999999 999999999999999999999998865332 256899999877 577899999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
|+.+||+|.++.+..
T Consensus 90 ~medgD~Idv~~~q~ 104 (106)
T 2eke_C 90 DMEDNDIIEAHREQI 104 (106)
T ss_dssp TCCTTEEEEEEECC-
T ss_pred CCCCCCEEEEEeecc
Confidence 999999999887653
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.35 E-value=3.2e-07 Score=65.12 Aligned_cols=75 Identities=9% Similarity=0.180 Sum_probs=54.3
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC-ccc-cCCcchhhhcC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN-QKL-LDENSALQDCG 141 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g-~kL-ldD~~tL~dyG 141 (178)
..|.|.|+..+|. +.|+|++++||.||+..|++.++.....+ .+.+.+.. +.| ...+.+|+++|
T Consensus 3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~-------------~l~~~~~p~~~l~~~~~~~l~~lg 68 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGF-------------SVYINRNKTGEITASSSKSLHLLK 68 (80)
T ss_dssp CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTC-------------CCCCSCCGGGGSSSCCCCTTTTTC
T ss_pred CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcc-------------eEEecCCCCCcccCCCCCCHHHcC
Confidence 4689999988885 46889999999999999999987543311 12333333 223 23788999999
Q ss_pred CCCCCEEEEEe
Q 030379 142 VRNNSQVQFVP 152 (178)
Q Consensus 142 Ikdgd~L~F~~ 152 (178)
|++||.|++.+
T Consensus 69 l~hGd~l~l~~ 79 (80)
T 2pjh_A 69 IKHGDLLFLFP 79 (80)
T ss_dssp CCTTCCEEC--
T ss_pred CCCCCEEEEec
Confidence 99999998764
No 98
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.18 E-value=7.4e-06 Score=59.08 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=58.7
Q ss_pred cCCceEEEEEc--cCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 62 MGSAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 62 ~G~AMkLtV~k--~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
+|.-|.||+.- -.++.|++.||..-||..|...+.+.++....+..|. .+.....+ .++.+++.|.|
T Consensus 1 ~~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~----------~irv~NK~-~~L~~~~~L~d 69 (81)
T 2bps_A 1 HGSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGH----------WIRVVNKD-KVFSGECKLSD 69 (81)
T ss_dssp CCCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTC----------EEEEGGGT-EEEETTSBTGG
T ss_pred CCcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCC----------EEEEecCC-EEEcCCCEEee
Confidence 35667888853 4788999999999999999999999997654332221 23344445 46689999999
Q ss_pred cCCCCCCEEE
Q 030379 140 CGVRNNSQVQ 149 (178)
Q Consensus 140 yGIkdgd~L~ 149 (178)
|||+|||.|.
T Consensus 70 ~~ItnGD~Le 79 (81)
T 2bps_A 70 CGITNGDRLE 79 (81)
T ss_dssp GTCCTTCEEE
T ss_pred CCcCCCCEEE
Confidence 9999999875
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.15 E-value=9.9e-06 Score=61.83 Aligned_cols=96 Identities=14% Similarity=0.253 Sum_probs=64.1
Q ss_pred CccccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCcccccccccc
Q 030379 39 DPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVW 118 (178)
Q Consensus 39 Dp~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW 118 (178)
+...+|-+..++.++..- -..+.-|+|.|+..+|..+.+.|..+.++..|+.|+.+.....+
T Consensus 17 ~~~~~~~~~~~~~~~~~~---k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~--------------- 78 (115)
T 3kyd_D 17 RSHMSDQEAKPSTEDLGD---KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM--------------- 78 (115)
T ss_dssp -------------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCT---------------
T ss_pred CCccccccccCccccccC---CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCCh---------------
Confidence 344445555554443321 12277899999999999999999999999999999998875322
Q ss_pred ceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 119 ANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 119 ~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
+++.+.|+|+.| .++.|..++|+.|||+|.+...
T Consensus 79 ~~irFlFDG~rI-~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 79 NSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp TSEEEEETTEEC-CTTCCTTTTTCCTTCEEEEEEC
T ss_pred hhEEEEECCeEC-CCCCCHHHcCCCCCCEEEEEee
Confidence 256899999877 5789999999999999988653
No 100
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.83 E-value=0.00011 Score=53.22 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
-.-+++-+++....-|-+.|+.++||.+|=+|...+.+- ||. +.+.|.|+|..| +.++++.||++
T Consensus 7 ~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I-----------~~~---~~IrllFDGdRL-dp~~tp~Dlem 71 (82)
T 3goe_A 7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKI-----------SFH---ERIRLEFEGEWL-DPNDQVQSTEL 71 (82)
T ss_dssp CCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTC-----------CCC---TTCEEEETTEEC-CTTSBGGGSSC
T ss_pred hHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCC-----------CcC---ceEEEEEcCccc-CccCChhhhCC
Confidence 345788888887788999999999999999988877643 331 156899999977 78999999999
Q ss_pred CCCCEEEEE
Q 030379 143 RNNSQVQFV 151 (178)
Q Consensus 143 kdgd~L~F~ 151 (178)
.|||+|-.+
T Consensus 72 eD~D~IDvm 80 (82)
T 3goe_A 72 EDEDQVSVV 80 (82)
T ss_dssp CTTCEEEEE
T ss_pred cCCceeeee
Confidence 999998654
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.77 E-value=9.9e-05 Score=60.98 Aligned_cols=79 Identities=6% Similarity=0.105 Sum_probs=66.8
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..+.-|+|.|+ .+|..+.+.|..+.++..|+.|+.......+ +++.++|+|+.| .++.|..++
T Consensus 25 ~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~---------------~~~RF~FdG~rI-~~~~TP~dL 87 (200)
T 3pge_A 25 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLRFLYDGIRI-QADQTPEDL 87 (200)
T ss_dssp CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG---------------GGEEEEETTEEC-CTTCCTTTT
T ss_pred CCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh---------------hhEEEEECCEEc-CCCCCHHHc
Confidence 44778999995 6999999999999999999999988865322 356899999987 578999999
Q ss_pred CCCCCCEEEEEeeeec
Q 030379 141 GVRNNSQVQFVPFVLS 156 (178)
Q Consensus 141 GIkdgd~L~F~~rl~~ 156 (178)
|+.|||+|.+......
T Consensus 88 ~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 88 DMEDNDIIEAHREQIG 103 (200)
T ss_dssp TCCTTEEEEEEECCSC
T ss_pred CCCCCCEEEEEeccCc
Confidence 9999999999887643
No 102
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00013 Score=60.80 Aligned_cols=79 Identities=6% Similarity=0.111 Sum_probs=66.0
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..+.-|+|.|. .+|..+.+.|..+.++..|+.|+.+.....+. ++.+.|+|+.| +++.|..++
T Consensus 53 dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~---------------sIRFLFDGqRI-~~ddTPeDL 115 (207)
T 3tix_A 53 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD---------------SLTFLYDGIEI-QADQTPEDL 115 (207)
T ss_dssp --CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGG---------------GSCEEETTEEC-CSSCCTTTT
T ss_pred CCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcc---------------cEEEEECCeec-CCCCCHHHc
Confidence 34788999995 69999999999999999999999988654332 45799999977 578999999
Q ss_pred CCCCCCEEEEEeeeec
Q 030379 141 GVRNNSQVQFVPFVLS 156 (178)
Q Consensus 141 GIkdgd~L~F~~rl~~ 156 (178)
++.|||+|.+......
T Consensus 116 dMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 116 DMEDNDIIEAHREQIG 131 (207)
T ss_dssp TCCTTEEEEECCCCCT
T ss_pred CCCCCCEEEEEEeccC
Confidence 9999999999887744
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.39 E-value=0.00088 Score=49.40 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=61.4
Q ss_pred hhcCCceEEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhh
Q 030379 60 LEMGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 138 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~ 138 (178)
-+.+..|+|.|+..+|. .+.+.|..+.++.-|..|..+.....+ .++.+.|+|++| ..++|-.
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~---------------~~vrF~FDG~rI-~~~~TP~ 83 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG---------------RKLSFFFDGTKL-SGRELPA 83 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS---------------SCCEEEETTEEC-CSCSCHH
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc---------------ccEEEEECCEEc-CCCCCHH
Confidence 34567799999999995 788999999999999988877754322 256899999977 5778999
Q ss_pred hcCCCCCCEEEE
Q 030379 139 DCGVRNNSQVQF 150 (178)
Q Consensus 139 dyGIkdgd~L~F 150 (178)
++|+.|||+|-+
T Consensus 84 dLdMEDgD~IDv 95 (97)
T 2jxx_A 84 DLGMESGDLIEV 95 (97)
T ss_dssp HHTCCTTEEEEE
T ss_pred HcCCCCCCEEEE
Confidence 999999999865
No 104
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.27 E-value=0.00093 Score=49.12 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=60.7
Q ss_pred hhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhh
Q 030379 59 SLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 138 (178)
Q Consensus 59 ale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~ 138 (178)
|..-|.+|.|+|...+|....|.|.++.|+.|+=+..-+++.+.++ .|+|.|.++ .+|-.-.++
T Consensus 3 ~~~~~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~---------------~~~Lkh~~k-~lDLSlpfR 66 (90)
T 2al3_A 3 APAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPS---------------EYDLKFQRT-VLDLSLQWR 66 (90)
T ss_dssp -------CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGG---------------GCEEEETTE-EESSSCBHH
T ss_pred ccccCCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChh---------------hCeEEeCCE-eccccceeE
Confidence 4456889999999999999999999999999965555555555333 469999996 558888999
Q ss_pred hcCCCCCCEEEEEeeee
Q 030379 139 DCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 139 dyGIkdgd~L~F~~rl~ 155 (178)
=.||-||..|..+..=+
T Consensus 67 lsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 67 FANLPNNAKLEMVPVSR 83 (90)
T ss_dssp HHCCCSSCEEEEECSSS
T ss_pred ecCCCCCCEEEEEEccC
Confidence 99999999999876543
No 105
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.05 E-value=0.0022 Score=49.68 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=55.4
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccc---------------cCc-cc---ccc--cccc-ceeEEe
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSN---------------LGH-RH---ISW--KHVW-ANYCLS 124 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~---------------~g~-~~---ISW--~~VW-~~~~L~ 124 (178)
.|.|+-.||+..++.|+.+.||.+|+..|.+.+..+...+ +|. ++ +-- +.+- -.-.|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 6899999999999999999999999999999986442200 000 00 000 0000 000111
Q ss_pred c-CCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 125 H-QNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 125 ~-~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
. ++..-+|++.+|.++||.++++|.+..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 1113457789999999999999877554
No 106
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.04 E-value=9.3e-05 Score=62.39 Aligned_cols=78 Identities=6% Similarity=0.119 Sum_probs=0.0
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
+.+.-|+|.| ..+|..+.+.|..+.++..|++|+.+.....+. ++.+.|+|++| .+++|..++
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~---------------siRFLFDGqRI-~dddTPadL 79 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD---------------SLRFLYDGIRI-QADQTPEDL 79 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCcc---------------ceEEEECCEec-CCCCCHHHc
Confidence 3467799999 889999999999999999999999888654322 56899999987 578999999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
|+.|||+|.+.....
T Consensus 80 ~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 80 DMEDNDIIEAHREQI 94 (227)
T ss_dssp ---------------
T ss_pred CCCCCCEEEEEeccc
Confidence 999999998886654
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.89 E-value=0.11 Score=38.40 Aligned_cols=75 Identities=8% Similarity=0.041 Sum_probs=61.4
Q ss_pred hhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhh
Q 030379 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 139 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~d 139 (178)
.+.+..|+|.|+ .+|..+-+.|..+.-..-|..|........+. +..+.|+|+++ .++.|-.+
T Consensus 16 ~~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~---------------sirFlfDG~rI-~~~~TP~~ 78 (95)
T 2l76_A 16 PETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPS---------------RILLLFGETEL-SPTATPRT 78 (95)
T ss_dssp CSCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGG---------------GEEEEETTEEC-CTTSCHHH
T ss_pred CCCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChh---------------hEEEEECCcCC-CCCCCHhH
Confidence 567888999998 57888888899999888888887777654433 45789999988 57889999
Q ss_pred cCCCCCCEEEEE
Q 030379 140 CGVRNNSQVQFV 151 (178)
Q Consensus 140 yGIkdgd~L~F~ 151 (178)
+|+.|||++-+.
T Consensus 79 L~meD~DiID~~ 90 (95)
T 2l76_A 79 LKLGVADIIDCV 90 (95)
T ss_dssp HTCCSSCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 999999998654
No 108
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.82 E-value=0.066 Score=37.26 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=54.1
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec--CCcccc--CCcchhhh
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH--QNQKLL--DENSALQD 139 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~--~g~kLl--dD~~tL~d 139 (178)
...+|.|+.-||+.+.-.-..+.||.+|..-|... .. + +..|.|.. -.+.+. +.+.+|.+
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~-~~-~--------------~~~f~L~t~fPrk~l~~~d~~~TL~e 69 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GF-P--------------WDEYKLLSTFPRRDVTQLDPNKSLLE 69 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT-TC-C--------------TTTEEEECSSSCCBGGGSCTTSBTTT
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc-CC-C--------------CCCeEEEeCCCCCCCcCCCCCCCHHH
Confidence 34689999999998877778899999999999873 21 1 12455553 345554 66789999
Q ss_pred cCCCCCCEEEEE
Q 030379 140 CGVRNNSQVQFV 151 (178)
Q Consensus 140 yGIkdgd~L~F~ 151 (178)
.|+.+++.|.+.
T Consensus 70 ~gL~p~a~L~ve 81 (84)
T 3qx1_A 70 VKLFPQETLFLE 81 (84)
T ss_dssp TTCCSEEEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 999999988764
No 109
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=95.77 E-value=0.035 Score=45.16 Aligned_cols=77 Identities=6% Similarity=0.119 Sum_probs=63.5
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
..+.-++|.|+. +|..+.+.|..+.++.-|+.|..+.....+. ++.+.|+|+++ .++++-.+.
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~---------------~~~f~fdG~~i-~~~~Tpk~L 79 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD---------------SLRFLYDGIRI-QADQTPEDL 79 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GCEEEETTEEC-CTTCCTTTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChh---------------eEEEEECCEec-cCCCChHHh
Confidence 345678999976 7888889999999999999999998765433 45899999987 678899999
Q ss_pred CCCCCCEEEEEeee
Q 030379 141 GVRNNSQVQFVPFV 154 (178)
Q Consensus 141 GIkdgd~L~F~~rl 154 (178)
.+.|+|++......
T Consensus 80 ~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 80 DMEDNDIIEAHREQ 93 (209)
T ss_dssp TCCTTEEEEEECSC
T ss_pred hhcccccchhhccc
Confidence 99999998776554
No 110
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=95.63 E-value=0.002 Score=57.51 Aligned_cols=77 Identities=6% Similarity=0.120 Sum_probs=0.0
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
.+.-|+|.|+. +|..+.+.|..+.++..|+.|+.+.....+ .++.+.|+|+.| .++.|..++|
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~---------------~~~rFlFdG~rI-~~~~TP~~L~ 80 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLRFLYDGIRI-QADQTPEDLD 80 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCc---------------ceEEEEECCeEC-CCCCChHHcC
Confidence 45678889975 788888889999999999999888765432 256789999887 5779999999
Q ss_pred CCCCCEEEEEeeee
Q 030379 142 VRNNSQVQFVPFVL 155 (178)
Q Consensus 142 Ikdgd~L~F~~rl~ 155 (178)
+.|||+|.+.....
T Consensus 81 MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 81 MEDNDIIEAHREQI 94 (360)
T ss_dssp --------------
T ss_pred CCccchhhhhhccC
Confidence 99999998877653
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.10 E-value=0.14 Score=37.62 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=56.0
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCcccc--CCcchhhhc
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLL--DENSALQDC 140 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLl--dD~~tL~dy 140 (178)
..+|.|+.-||+.+.-....+.||.||..-|...... + +..|.|+ |-.+.+. +.+++|.+.
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~-~--------------~~~f~L~t~fPrk~l~~~d~~~TL~el 77 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGN-T--------------YGNFSLATMFPRREFTREDYKRRLLDL 77 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTT-S--------------SCSCEEECSSSCCBCCTTTTTSBTGGG
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCC-C--------------CCceEEEcCCCCcCCcccccCCCHHHC
Confidence 4799999999999888889999999999999987421 1 1234444 3344444 457899999
Q ss_pred CCCCCCEEEEEee
Q 030379 141 GVRNNSQVQFVPF 153 (178)
Q Consensus 141 GIkdgd~L~F~~r 153 (178)
|+.+...|++...
T Consensus 78 gL~psa~L~v~~~ 90 (109)
T 2dzk_A 78 ELAPSASVVLLPA 90 (109)
T ss_dssp TCSSEEEEEEECC
T ss_pred CCCCceEEEEEEC
Confidence 9999988887764
No 112
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=94.98 E-value=0.0042 Score=54.30 Aligned_cols=78 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
+.+.-++|.|+. +|....+.|..+.+..-|+++..++....+. ++.+.|+|++| .++.|-.++
T Consensus 26 ~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~---------------~~~f~f~G~~i-~~~~Tp~~l 88 (389)
T 4da1_A 26 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD---------------SLRFLYDGIRI-QADQAPEDL 88 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcc---------------eEEEEECCEEc-CCCCCHHHc
Confidence 355778899976 7888888899999999999999988765333 45789999877 578999999
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
|+.|||+|.+.....
T Consensus 89 ~med~d~i~~~~~q~ 103 (389)
T 4da1_A 89 DMEDNDIIEAHREQI 103 (389)
T ss_dssp ---------------
T ss_pred CCCCCCEeeeeeccc
Confidence 999999988776654
No 113
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.80 E-value=0.23 Score=36.37 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=63.7
Q ss_pred cCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeE
Q 030379 43 ADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYC 122 (178)
Q Consensus 43 ~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~ 122 (178)
..||.+|..++ ....+|.|+.-||+.+.-.-..+.||.+|..-|...- . .+..|.
T Consensus 10 ~~lp~EP~~~~---------~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~---------------~~~~f~ 64 (109)
T 2cr5_A 10 PDLPEEPSETA---------EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-Y---------------HKSLYR 64 (109)
T ss_dssp CCCCCCCCSSC---------SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-C---------------CTTTEE
T ss_pred ccCCCCCCCCC---------CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-C---------------CCCCeE
Confidence 34888886432 3578999999999988777788999999999998541 1 122445
Q ss_pred Ee--cCCcccc-CCcchhhhcCCCCCCEEEEEeeee
Q 030379 123 LS--HQNQKLL-DENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 123 L~--~~g~kLl-dD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
|+ |-.+.+. +.+.+|.+.|+.++..|.+..+-.
T Consensus 65 L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~~ 100 (109)
T 2cr5_A 65 LSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQ 100 (109)
T ss_dssp EECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred EEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCCC
Confidence 54 4355565 568999999999998887665433
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.72 E-value=0.2 Score=43.10 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC---c--cccCCcchhhh
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN---Q--KLLDENSALQD 139 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g---~--kLldD~~tL~d 139 (178)
++.|.|.- .+..-.+..++++||.|.-+.|.+.++.... + -|..|.|.-.. + .-+++..+|..
T Consensus 3 ~~~~~~~~-~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~---~--------~~~~y~l~~~~~~~~~~~Wl~~~~~l~~ 70 (371)
T 3ivf_A 3 ALSLKISI-GNVVKTMQFEPSTMVYDACRMIRERIPEALA---G--------PPNDFGLFLSDDDPKKGIWLEAGKALDY 70 (371)
T ss_dssp CEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHTTCGGGGS---S--------CGGGEEEEECCSSGGGCEECCTTSBGGG
T ss_pred cEEEEEEe-cceeEEEEECCCCCHHHHHHHHHHhcccccC---C--------CHHHCeEeccCCCCCcCEeccCCCCHHH
Confidence 34444432 3777788899999999999999999863211 1 25666766622 1 11356679999
Q ss_pred cCCCCCCEEEEEeee
Q 030379 140 CGVRNNSQVQFVPFV 154 (178)
Q Consensus 140 yGIkdgd~L~F~~rl 154 (178)
||+++|+.+.|.++-
T Consensus 71 y~~~~~~~l~~~~~~ 85 (371)
T 3ivf_A 71 YMLRNGDTMEYRKKQ 85 (371)
T ss_dssp GTCCTTCEEEEEECE
T ss_pred hCCCCCceeeccCce
Confidence 999999999998653
No 115
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.45 E-value=0.24 Score=37.46 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=48.8
Q ss_pred CceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHhc-cccccc-c--CccccccccccceeEEecCCccccC-----
Q 030379 64 SAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKVN-DMEQSN-L--GHRHISWKHVWANYCLSHQNQKLLD----- 132 (178)
Q Consensus 64 ~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~~-~~~~r~-~--g~~~ISW~~VW~~~~L~~~g~kLld----- 132 (178)
+.|+|.|.-. +++.++|.|-+-.||.+.|..|-.++- ..|.++ + ..-.+-|+.= -.|..|.|
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g-------~~~~iL~D~D~ts 82 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPG-------STAQILSDLDLTS 82 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC---------CCCEECCSSCTTS
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecC-------CCCccccccCccc
Confidence 3467776533 356689999889999999999887752 123221 1 1112334320 01221211
Q ss_pred ---C----cchhhhcCCCCCCEEEEEeee
Q 030379 133 ---E----NSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 133 ---D----~~tL~dyGIkdgd~L~F~~rl 154 (178)
+ -.||..|+|.||++|.++++.
T Consensus 83 ~~~~~wkrLNTL~HY~V~dgatl~l~~~~ 111 (111)
T 4e71_A 83 QREGRWKRVNTLMHYNVRDGATLILSKVG 111 (111)
T ss_dssp CC---CCCCCBHHHHTCCTTCEEEEEEC-
T ss_pred eecCcceEecchhhcCCCCCCEEEEEeCC
Confidence 1 158999999999999998863
No 116
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.39 E-value=0.2 Score=37.92 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=55.7
Q ss_pred HhhhcCC-ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCccccCCc
Q 030379 58 ISLEMGS-AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLLDEN 134 (178)
Q Consensus 58 Iale~G~-AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kLldD~ 134 (178)
+.+...+ ..+|.|+.-||+.+.-....+.||.||..-|......+. +..|.|+ |-.+.+.+++
T Consensus 44 ~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--------------~~~f~L~t~fPrk~l~d~~ 109 (127)
T 1s3s_G 44 ILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--------------ATSFVLMTTFPNKELADEN 109 (127)
T ss_dssp SCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--------------TSCEEEEETTTTEECCSTT
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--------------CCCeEEecCCCCCCCCCCC
Confidence 3444443 479999999999988888899999999999998743111 1244554 4455666678
Q ss_pred chhhhcCCCCCCE
Q 030379 135 SALQDCGVRNNSQ 147 (178)
Q Consensus 135 ~tL~dyGIkdgd~ 147 (178)
.+|.+.|+.+...
T Consensus 110 ~TL~eagL~psav 122 (127)
T 1s3s_G 110 QTLKEANLLNAVI 122 (127)
T ss_dssp CBHHHHTCSSCEE
T ss_pred CcHHHCCCcCceE
Confidence 9999999999553
No 117
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.00 E-value=0.29 Score=34.78 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCceEEEEEcc-------CCceEEEEeCCCCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCccccC
Q 030379 63 GSAMRISILKL-------DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLD 132 (178)
Q Consensus 63 G~AMkLtV~k~-------dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~kLld 132 (178)
-.+|+|+|+-. +.....++++..+||.||...+...++..... ..|. +...+.+.-+++ ..+
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~-------~~~~v~v~VNg~-~v~ 78 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYD-------EDADVNIAVNGR-YVS 78 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSC-------TTSSBEEEETTB-CCC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccc-------cCCcEEEEECCE-ECC
Confidence 45788988643 22456788888899999999998876532110 0010 011222333343 333
Q ss_pred CcchhhhcCCCCCCEEEEEeee
Q 030379 133 ENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 133 D~~tL~dyGIkdgd~L~F~~rl 154 (178)
.++-+++||+|.|.+-+
T Consensus 79 -----~~~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 79 -----WDEELKDGDVVGVFPPV 95 (98)
T ss_dssp -----TTCBCCTTCEEEEESCC
T ss_pred -----CCCCCCCCCEEEEECCC
Confidence 25679999999998765
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.00 E-value=0.3 Score=36.81 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=56.6
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEe--cCCccc--cCCcchhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKL--LDENSALQ 138 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~--~~g~kL--ldD~~tL~ 138 (178)
....+|.|+.-||+.+.-....+.||.+|..-|... . ++ +..|.|+ |-.+.+ .+.+.+|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~-~~--------------~~~F~L~t~fPrk~l~~~d~~~TL~ 104 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G-YP--------------NERFELLTNFPRRKLSHLDYDITLQ 104 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H-CC--------------TTTEEEECSSSCCEETSSCSSSCTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C-CC--------------CCCeEEecCCCCcCCccCCCCCCHH
Confidence 346899999999999888888999999999999765 2 11 1234554 335556 35689999
Q ss_pred hcCCCCCCEEEEEee
Q 030379 139 DCGVRNNSQVQFVPF 153 (178)
Q Consensus 139 dyGIkdgd~L~F~~r 153 (178)
+.|+.+...|++...
T Consensus 105 e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 105 EAGLCPQETVFVQES 119 (124)
T ss_dssp TTTCCSSBCCEEEEC
T ss_pred HCCCCCceEEEEEEc
Confidence 999999888877654
No 119
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.76 E-value=0.22 Score=40.56 Aligned_cols=80 Identities=13% Similarity=0.224 Sum_probs=52.9
Q ss_pred eEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCC
Q 030379 66 MRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 143 (178)
Q Consensus 66 MkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIk 143 (178)
+.+++....... +.+.+...+||.+|++.+.+.|...+.++. .+|+-+-- .....|.+++.+|.+++|.
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~--------RlW~~~~~-~~~~~L~~~~~tl~~~~l~ 198 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKET--------RLWNKYMS-NTFEPLNKPDSTIQDAGLY 198 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCE--------EEEEEEET-TEEEECCCTTSBHHHHTCC
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCce--------EEEEecCC-CCeeecCCCCCCHHHhCCC
Confidence 444555544332 456678889999999999999976544221 25553311 1123455557899999999
Q ss_pred CCCEEEEEeee
Q 030379 144 NNSQVQFVPFV 154 (178)
Q Consensus 144 dgd~L~F~~rl 154 (178)
+|..|.+-.|-
T Consensus 199 ~~Q~illE~r~ 209 (217)
T 4a3p_A 199 QGQVLVIEQKN 209 (217)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEec
Confidence 99999887664
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.75 E-value=0.37 Score=37.75 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=51.7
Q ss_pred CceEEEEEccC------CceEEEEeCCCCcHHHHHHHHHHHhc-cccccc-cC--ccccccccccc-eeEEecCC--ccc
Q 030379 64 SAMRISILKLD------GTSFDVAVMNSATVKDLKLAIKKKVN-DMEQSN-LG--HRHISWKHVWA-NYCLSHQN--QKL 130 (178)
Q Consensus 64 ~AMkLtV~k~d------g~~~~V~V~~sATV~DLKkAI~~~~~-~~~~r~-~g--~~~ISW~~VW~-~~~L~~~g--~kL 130 (178)
..|+|.|.-.+ ...++|.|-+-.||.+.|..|-.++- ..|.++ +. .--+-|+.==. ...|.-.. -++
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 46788876543 34689999999999999999887752 223321 11 11223422000 11111100 000
Q ss_pred cC---CcchhhhcCCCCCCEEEEEeeeecC
Q 030379 131 LD---ENSALQDCGVRNNSQVQFVPFVLSK 157 (178)
Q Consensus 131 ld---D~~tL~dyGIkdgd~L~F~~rl~~~ 157 (178)
.+ --.||..|+|.||++|.++++....
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~~~~~ 132 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPCLTKH 132 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC----
T ss_pred cCCceeecchhccCCCCCCEEEEEECCCcc
Confidence 00 0138999999999999999987543
No 121
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=92.15 E-value=0.9 Score=32.30 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=39.1
Q ss_pred ceEEEEeC--CCCcHHHHHHHHHHHhccc-ccc----ccCccccccccccceeEEecCCccccCCcchh--hhcCCCCCC
Q 030379 76 TSFDVAVM--NSATVKDLKLAIKKKVNDM-EQS----NLGHRHISWKHVWANYCLSHQNQKLLDENSAL--QDCGVRNNS 146 (178)
Q Consensus 76 ~~~~V~V~--~sATV~DLKkAI~~~~~~~-~~r----~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL--~dyGIkdgd 146 (178)
....++++ ..+||.||...+.+.++.. +.- +.|. .+.+++++-+..- -..+ -++-+++||
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~--------lr~~~~v~VN~~~---~~~~~~~d~~L~dgD 88 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDS--------IRPGIITLINDTD---WELEGEKDYILEDGD 88 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTE--------ECTTEEEEETTEE---GGGGTGGGCBCCTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCc--------cccCeEEEECCEE---ccccCCCCcCcCCCC
Confidence 45677777 6799999999998876421 100 0010 1112344443321 1112 245699999
Q ss_pred EEEEEeee
Q 030379 147 QVQFVPFV 154 (178)
Q Consensus 147 ~L~F~~rl 154 (178)
+|.|.+=+
T Consensus 89 eVa~~Ppv 96 (99)
T 2qjl_A 89 IISFTSTL 96 (99)
T ss_dssp EEEEEECT
T ss_pred EEEEECCC
Confidence 99998755
No 122
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.10 E-value=0.61 Score=38.28 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=45.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC---CccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---NQKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~---g~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
.+.+...+||.+|++.+.+.+...+.++. .+|. ++. ...|.+.+.+|.+++|.+|.+|.+-.|-
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~--------RLW~----~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERET--------RLWN----KYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCE--------EEEE----CSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeE--------EEEE----ecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 34457889999999999999976544221 1332 232 2345556799999999999998887765
No 123
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=91.91 E-value=0.95 Score=37.78 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=55.3
Q ss_pred hhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec--CCcc-ccCCcch
Q 030379 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH--QNQK-LLDENSA 136 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~--~g~k-LldD~~t 136 (178)
-..++.+.+.|...|| .+.|.|+.++|+.||=..|.+.....+. .-|.|.+ ++.. -++.+++
T Consensus 17 ~~~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~--------------~~FgL~~~~~~~~~wL~~~~~ 81 (314)
T 1h4r_A 17 RKQPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRET--------------WFFGLQYTIKDTVAWLKMDKK 81 (314)
T ss_dssp ----CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEETTEEEECCTTSB
T ss_pred CCCCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCC--------------ccceEEEEeCCcCeeCCCccC
Confidence 3458899999999999 7889999999999999999999865322 1344544 3332 2567788
Q ss_pred hhhcCCCCCCEEEEEeee
Q 030379 137 LQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 137 L~dyGIkdgd~L~F~~rl 154 (178)
|.+.+++.+....|.=|+
T Consensus 82 i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 82 VLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp GGGSSCCCSSSEEEEEEE
T ss_pred HHHcCCCCCCCEEEEEEE
Confidence 888887766655444344
No 124
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.61 E-value=0.97 Score=34.36 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=51.9
Q ss_pred CceEEEEEccC---CceEEEEeCCCCcHHHHHHHHHHHhc-cccccc-cC--ccccccccc-cceeEEecCC--ccccC-
Q 030379 64 SAMRISILKLD---GTSFDVAVMNSATVKDLKLAIKKKVN-DMEQSN-LG--HRHISWKHV-WANYCLSHQN--QKLLD- 132 (178)
Q Consensus 64 ~AMkLtV~k~d---g~~~~V~V~~sATV~DLKkAI~~~~~-~~~~r~-~g--~~~ISW~~V-W~~~~L~~~g--~kLld- 132 (178)
..|+|.|.-.+ ...++|.|-+-.||.+.|..|-.++- ..|.++ +. .-.+-|+.= =..+.|.-.. .++.+
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 45677775433 44589999888999999998887752 223321 11 112234321 1112222110 01111
Q ss_pred --CcchhhhcCCCCCCEEEEEeee
Q 030379 133 --ENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 133 --D~~tL~dyGIkdgd~L~F~~rl 154 (178)
--.||..|+|.||++|.+++|-
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 1258999999999999998874
No 125
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.08 E-value=1.2 Score=29.83 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=40.6
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
.|+|+|.-.. ....++++..+||.||...+. ..+. .+....+++.+..|. -+++
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l~----~~~~---------------~v~vavN~~~v~~~~------~L~~ 57 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGELE----IPIE---------------TVVVKKNGQIVIDEE------EIFD 57 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHTT----CCTT---------------TEEEEETTEECCTTS------BCCT
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHhC----CCCC---------------CEEEEECCEECCCcc------cCCC
Confidence 4999993222 224567788899999988763 1111 123555565443332 5899
Q ss_pred CCEEEEEeee
Q 030379 145 NSQVQFVPFV 154 (178)
Q Consensus 145 gd~L~F~~rl 154 (178)
||+|-|.+-+
T Consensus 58 gD~V~ii~~V 67 (70)
T 1ryj_A 58 GDIIEVIRVI 67 (70)
T ss_dssp TCEEEEEECT
T ss_pred CCEEEEEecc
Confidence 9999998765
No 126
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=90.61 E-value=0.62 Score=32.14 Aligned_cols=67 Identities=18% Similarity=0.095 Sum_probs=41.6
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEe
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
....++++..+||.||..++...++....+ +.|. ++.++.++-+...... ++-+++||+|.|.+
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~--------l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGE--------LYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSC--------BCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCc--------ccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 456788888899999999998877532110 1111 1222344433334332 45699999999988
Q ss_pred eee
Q 030379 153 FVL 155 (178)
Q Consensus 153 rl~ 155 (178)
-+.
T Consensus 85 pv~ 87 (89)
T 3po0_A 85 PVS 87 (89)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 127
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.31 E-value=3 Score=32.13 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=50.5
Q ss_pred ceEEEEE--ccCCceEEEEeCCCCcHHHHHHHHHHHhc-cccccc-c--Ccccccccccc-ceeEEecC-C-ccccC---
Q 030379 65 AMRISIL--KLDGTSFDVAVMNSATVKDLKLAIKKKVN-DMEQSN-L--GHRHISWKHVW-ANYCLSHQ-N-QKLLD--- 132 (178)
Q Consensus 65 AMkLtV~--k~dg~~~~V~V~~sATV~DLKkAI~~~~~-~~~~r~-~--g~~~ISW~~VW-~~~~L~~~-g-~kLld--- 132 (178)
.|+|.+. ..++..++|.|-+-.||.+.|..|-.++- ..|.++ + ..-.+-|+.== ..+.|.-. . .++.+
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 3455554 34566789999989999999998887762 223221 0 01112232100 01111110 0 00111
Q ss_pred CcchhhhcCCCCCCEEEEEeeeec
Q 030379 133 ENSALQDCGVRNNSQVQFVPFVLS 156 (178)
Q Consensus 133 D~~tL~dyGIkdgd~L~F~~rl~~ 156 (178)
--.||..|+|.||.+|.++++..+
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~~~ 107 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLIDKK 107 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC--
T ss_pred EeccccccCCCCCCEEEEEEcccc
Confidence 125899999999999999988643
No 128
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=89.78 E-value=0.69 Score=33.03 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=41.1
Q ss_pred CceEEEEEccCCceEEEEeCCC-CcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 64 SAMRISILKLDGTSFDVAVMNS-ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~s-ATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
..|+|+| ||+.++ ++.. +||.||-..+. ..+. .+.+..+++.+ ......+.-+
T Consensus 19 ~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L~----~~~~---------------~vaVavNg~iV--~~~~~~~~~L 72 (87)
T 1tyg_B 19 GRHMLQL---NGKDVK--WKKDTGTIQDLLASYQ----LENK---------------IVIVERNKEII--GKERYHEVEL 72 (87)
T ss_dssp ---CEEE---TTEEEC--CSSSCCBHHHHHHHTT----CTTS---------------CCEEEETTEEE--CGGGTTTSBC
T ss_pred cceEEEE---CCEEEE--CCCCCCcHHHHHHHhC----CCCC---------------CEEEEECCEEC--ChhhcCCcCC
Confidence 3588888 888654 4776 89999988763 1111 12345556533 2334555679
Q ss_pred CCCCEEEEEeee
Q 030379 143 RNNSQVQFVPFV 154 (178)
Q Consensus 143 kdgd~L~F~~rl 154 (178)
++||+|-|++-+
T Consensus 73 ~dGD~Vei~~~V 84 (87)
T 1tyg_B 73 CDRDVIEIVHFV 84 (87)
T ss_dssp CSSSEEEEEEEC
T ss_pred CCCCEEEEEccc
Confidence 999999998765
No 129
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=89.40 E-value=1.2 Score=37.28 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=53.1
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC---C-ccccCCcchh
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---N-QKLLDENSAL 137 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~---g-~kLldD~~tL 137 (178)
..+.|.+.|.-.||+...+.|+.++|+.||=..|.......+. . -|-|.+. | ...++.+++|
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~-~-------------~FgL~~~~~~~~~~wLd~~k~i 79 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEE-D-------------YFGLAIWDNATSKTWLDSAKEI 79 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSG-G-------------GEEEEEEEETTEEEECCTTSBH
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCc-c-------------eeEEEEEcCCCccchhccchhH
Confidence 4567999999999999999999999999999999999875422 1 1233332 2 2335666777
Q ss_pred hhcCCCCCCEEEEEeee
Q 030379 138 QDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 138 ~dyGIkdgd~L~F~~rl 154 (178)
.+......-.++|.++.
T Consensus 80 ~~q~~~~~~~l~frvkf 96 (296)
T 3qij_A 80 KKQVRGVPWNFTFNVKF 96 (296)
T ss_dssp HHHC---CCEEEEEESS
T ss_pred HHhcCCCCcEEEEEEEE
Confidence 77754444567776554
No 130
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.53 E-value=1.2 Score=32.50 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=54.7
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC--ccccCCcchhhhcC
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN--QKLLDENSALQDCG 141 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g--~kLldD~~tL~dyG 141 (178)
++.+|.|.-...+..-|-|.+.++..+|=-+|-++..+.|+ ++.|.-.. ...+|-+++|.|||
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~---------------~~~Ll~d~~~~e~LdLskSLndlg 73 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPL---------------HTLLLKDYQSQEPLDLTKSLNDLG 73 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTT---------------SEEEESCSSCCCBCCTTSCHHHHT
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChh---------------hEEEecCCCCCcccchhcchhhhh
Confidence 45788886666677777799999999999999999887766 23444432 23457899999999
Q ss_pred CCCCCEEEEEeee
Q 030379 142 VRNNSQVQFVPFV 154 (178)
Q Consensus 142 Ikdgd~L~F~~rl 154 (178)
|+. |+.+..-
T Consensus 74 irE---Lya~d~~ 83 (91)
T 2daj_A 74 LRE---LYAMDVN 83 (91)
T ss_dssp CSE---EEEEECC
T ss_pred hhh---hheeccc
Confidence 995 7665543
No 131
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.46 E-value=3.1 Score=35.58 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=63.2
Q ss_pred CHHHH--HHHHhhhcCCc-eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC
Q 030379 50 TLSDV--DTLISLEMGSA-MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ 126 (178)
Q Consensus 50 t~~ev--~~~Iale~G~A-MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~ 126 (178)
|++.. .+-.+++++.. +.+.|...||+...|.|+.++|+.||=..|......... .-|.|.+.
T Consensus 67 ~l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~--------------~~FgL~~~ 132 (371)
T 3ivf_A 67 ALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH--------------DEYSLVRE 132 (371)
T ss_dssp BGGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCG--------------GGEEEECC
T ss_pred CHHHhCCCCCceeeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCc--------------cccEEEEE
Confidence 66653 33346666543 889999999999999999999999999999999865321 13455543
Q ss_pred C--------ccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 127 N--------QKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 127 g--------~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
. ..-++-+++|.+.|+.....++|.++.
T Consensus 133 ~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvKf 168 (371)
T 3ivf_A 133 LMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRKF 168 (371)
T ss_dssp C----------CCCTTSBTGGGTCCTTCEEEEEECC
T ss_pred ecccccchHHHHHhcCchhHhhCCCCCceEEEEEEE
Confidence 2 123455677777787666778886554
No 132
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=88.43 E-value=0.8 Score=30.19 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=40.5
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| +|+.+ +++..+||.||-..+. ..+. .+....+++ +. ......+.-+++|
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l~----~~~~---------------~v~vavN~~-~v-~~~~~~~~~L~~g 54 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQLD----QRQA---------------GAALAINQQ-IV-PREQWAQHIVQDG 54 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHHT----CCCS---------------SEEEEETTE-EE-CHHHHTTCCCCTT
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHcC----CCCC---------------CEEEEECCE-EC-CchhcCCcCCCCC
Confidence 66777 88875 4577899999988773 1111 123344454 33 2333445679999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
|+|.|.+-+.
T Consensus 55 D~v~i~~~V~ 64 (66)
T 1f0z_A 55 DQILLFQVIA 64 (66)
T ss_dssp EEECEEESCC
T ss_pred CEEEEEeecc
Confidence 9999987653
No 133
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=88.35 E-value=2.7 Score=34.46 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=52.7
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC---Cc-cccCCcchhhhc
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---NQ-KLLDENSALQDC 140 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~---g~-kLldD~~tL~dy 140 (178)
+|.|.|...|| .+.|.|+.++|+.||=.+|.+.....+. .-|.|.+. |. ..++.+++|.+.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~--------------~~FgL~~~~~~~~~~wLd~~~~l~~q 65 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREV--------------WFFGLQYQDTKGFSTWLKLNKKVTAQ 65 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEBTTSCEEECCSSSBGGGS
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCc--------------ceeEEEEECCCCceeecccccCHHhh
Confidence 47888988998 5789999999999999999999875322 13455542 32 234667788888
Q ss_pred CCCCCCEEEEEeeee
Q 030379 141 GVRNNSQVQFVPFVL 155 (178)
Q Consensus 141 GIkdgd~L~F~~rl~ 155 (178)
+++.+....|.=|++
T Consensus 66 ~~~~~~~~~l~fr~k 80 (294)
T 1ef1_A 66 DVRKESPLLFKFRAK 80 (294)
T ss_dssp CBCCCSSEEEEEEES
T ss_pred ccCCCCCEEEEEEEE
Confidence 776665544433443
No 134
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=88.20 E-value=2.4 Score=30.58 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=46.6
Q ss_pred CceEEEEEccCCceEEEEeCC-CCcHHHH-HHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcC
Q 030379 64 SAMRISILKLDGTSFDVAVMN-SATVKDL-KLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 141 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~-sATV~DL-KkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyG 141 (178)
++|||||+-. +..+-|.-.+ +.||.+| ++|+.++....+.. . =+|-+|= .|-+.+-.|++.++.|.|-
T Consensus 1 ~~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~--~---~~~v~V~---~l~~~~ggiLD~DD~l~dV- 70 (85)
T 2ns5_A 1 SEFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKD--P---NYWIQVH---RLEHGDGGILDLDDILCDV- 70 (85)
T ss_dssp CCEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCC--T---TSCEEEE---EEECSSSCEECTTSCHHHH-
T ss_pred CccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCC--C---CcEEEEE---EEEeCCCcEeCcccchhhh-
Confidence 4899999766 5555555533 4699999 55777776654431 1 1233321 1334333577878888887
Q ss_pred CCCCCEEE
Q 030379 142 VRNNSQVQ 149 (178)
Q Consensus 142 Ikdgd~L~ 149 (178)
+.|+++|.
T Consensus 71 ldD~e~i~ 78 (85)
T 2ns5_A 71 ADDKDRLV 78 (85)
T ss_dssp SCTTEEEE
T ss_pred ccCcceEE
Confidence 55777754
No 135
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=88.00 E-value=1.9 Score=32.00 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=47.5
Q ss_pred CceEEEEEccCC-------c-eEEEEeCC---CCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCcc
Q 030379 64 SAMRISILKLDG-------T-SFDVAVMN---SATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQK 129 (178)
Q Consensus 64 ~AMkLtV~k~dg-------~-~~~V~V~~---sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~k 129 (178)
..|+|+|+-..+ + ...|+++. .+||.||-..+.+.++....+ +.|. + +.+++++-+.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~-------l-r~~i~VlVN~- 80 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS-------V-RPGILVLIND- 80 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSS-------C-CSSEEEEESS-
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCc-------c-cCCeEEEECC-
Confidence 348898865432 2 45688883 379999999999887422111 1121 0 1223444332
Q ss_pred ccCCcchhh--hcCCCCCCEEEEEeeee
Q 030379 130 LLDENSALQ--DCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 130 LldD~~tL~--dyGIkdgd~L~F~~rl~ 155 (178)
.|-..|. ++-+++||+|.|++-+.
T Consensus 81 --~di~~l~gldt~L~dGDeV~iip~va 106 (114)
T 1wgk_A 81 --ADWELLGELDYQLQDQDSILFISTLH 106 (114)
T ss_dssp --SBHHHHCTTTCBCCSSEEEEEEECSC
T ss_pred --eeeeccCCcCcCCCCCCEEEEeCCCC
Confidence 1222222 56799999999998764
No 136
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.50 E-value=2.4 Score=39.24 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecC---C-ccccCCcchhh
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---N-QKLLDENSALQ 138 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~---g-~kLldD~~tL~ 138 (178)
|..|.|.|...|| .+.|.|+.++|+.||=..|......... .-|.|.|. | ...++.+++|.
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~--------------~~FGL~~~d~~~~~~WLd~~k~i~ 66 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREV--------------WFFGLQYTDSKGDLTWIKLYKKVM 66 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEBTTSCEEECCTTSBGG
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCc--------------cceeEEEEecCcchhHhhccccHH
Confidence 6789999999998 6789999999999999999999865321 13455443 2 22456678888
Q ss_pred hcCCCCCCEEEEEeeeecC
Q 030379 139 DCGVRNNSQVQFVPFVLSK 157 (178)
Q Consensus 139 dyGIkdgd~L~F~~rl~~~ 157 (178)
+.+++.+....|.=|++.+
T Consensus 67 ~q~~~~~~~~~L~FRvkfy 85 (575)
T 2i1j_A 67 QQDVKKENPLQFKFRAKFY 85 (575)
T ss_dssp GSCBCCCSSEEEEEEESSC
T ss_pred HhcccCCCCeEEEEEEEEc
Confidence 8888777765555555444
No 137
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.92 E-value=0.94 Score=31.49 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=37.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhcccccc---c--cCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQS---N--LGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~r---~--~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
.|++ ..+||.||..++...++..... . .|. ++. ++.++-+.....+..- -+.-+++||+|.|.+-
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~-------~~~-~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGK-------LHR-FVNIYVNDEDVRFSGG-LATAIADGDSVTILPA 89 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTS-------BCT-TEEEEETTEEGGGTTG-GGCBCCTTCEEEEEEC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCc-------ccC-CEEEEECCEEccCcCC-CCcCCCCCCEEEEECC
Confidence 4554 5689999999999887532110 0 111 111 2333333223222111 2455999999999986
Q ss_pred ee
Q 030379 154 VL 155 (178)
Q Consensus 154 l~ 155 (178)
+.
T Consensus 90 v~ 91 (93)
T 3dwg_C 90 VA 91 (93)
T ss_dssp CT
T ss_pred CC
Confidence 63
No 138
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.57 E-value=1.8 Score=29.59 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=43.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....+.+...+|..-..-.-.=.+..+..+||...-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFS-PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp EEECCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999998887 799988888877656553333223358888889988653
No 139
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=85.92 E-value=4.4 Score=31.21 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=50.1
Q ss_pred CceEEEEEc---cC------CceEEEEeCCCCcHHHHHHHHHHHhc---cccccc-cCccccccccccceeEEecC---C
Q 030379 64 SAMRISILK---LD------GTSFDVAVMNSATVKDLKLAIKKKVN---DMEQSN-LGHRHISWKHVWANYCLSHQ---N 127 (178)
Q Consensus 64 ~AMkLtV~k---~d------g~~~~V~V~~sATV~DLKkAI~~~~~---~~~~r~-~g~~~ISW~~VW~~~~L~~~---g 127 (178)
.+|+|.|.. .. .+.++|.|-+-.||.+.|..|-.++- -.|.++ ...-.+-|+.==....|.-. .
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 357777765 22 24589999989999999998877652 223321 11122334321111111111 1
Q ss_pred ccccC---CcchhhhcCCCCCCEEEEEe
Q 030379 128 QKLLD---ENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 128 ~kLld---D~~tL~dyGIkdgd~L~F~~ 152 (178)
+++.+ --.||..|+|.||++|-+.+
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 11111 12588999999999998765
No 140
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=85.07 E-value=3.5 Score=27.33 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=43.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|.+.+|.+-..-.-.=.+..+..+||...-
T Consensus 12 ~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFN-ECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp EECSCCTTCCHHHHHHHHH-TTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3578999999999998776 589988888887666554333333458899999998653
No 141
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=84.96 E-value=2.3 Score=28.48 Aligned_cols=57 Identities=18% Similarity=0.473 Sum_probs=33.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 80 VAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 80 V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
+++ ..+||.||..++..... ... | -.. +.+.-+.....+ .+.-+++||+|.|.+-+.
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~-l~~---------~---l~~-~~vavN~~~v~~----~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEG-LKE---------W---LGV-CAIALNDHLIDN----LNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTT-TTT---------T---TTT-CEEEESSSEECC----TTCCCCTTCEEEEECCBC
T ss_pred Eee-CCCcHHHHHHHHHHCcC-HHH---------H---hhc-cEEEECCEEcCC----CCcCCCCCCEEEEECCCC
Confidence 555 57899999999975421 100 0 011 333333223222 245699999999998664
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=83.96 E-value=4.3 Score=26.49 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=42.2
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.+ .+|.-..+.+... +|.+-..-.-.=.+..+..+|++..-
T Consensus 11 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 568999999999999887 7999888888664 45443333223358899999988653
No 143
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=82.43 E-value=4.9 Score=38.34 Aligned_cols=94 Identities=16% Similarity=0.292 Sum_probs=50.8
Q ss_pred CceEEEEEccCC------ceEEEEeCCCCcHHHHHHHHHHHh-ccccccc-c--Ccccccccccc-ceeEEecCC--ccc
Q 030379 64 SAMRISILKLDG------TSFDVAVMNSATVKDLKLAIKKKV-NDMEQSN-L--GHRHISWKHVW-ANYCLSHQN--QKL 130 (178)
Q Consensus 64 ~AMkLtV~k~dg------~~~~V~V~~sATV~DLKkAI~~~~-~~~~~r~-~--g~~~ISW~~VW-~~~~L~~~g--~kL 130 (178)
..|+|.|.-.+| +.++|.|-+-.||.+.|..|-.++ ...|.++ + ..-..-|+.== .+..|.-.. .++
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 457888866433 458999998999999999887654 2223221 1 11112233200 011111110 001
Q ss_pred cC---CcchhhhcCCCCCCEEEEEeeeecC
Q 030379 131 LD---ENSALQDCGVRNNSQVQFVPFVLSK 157 (178)
Q Consensus 131 ld---D~~tL~dyGIkdgd~L~F~~rl~~~ 157 (178)
.+ --.||..|+|.||++|.++++..+.
T Consensus 336 ~~~wkrLNTL~HY~V~dga~v~L~p~~~~~ 365 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDGATVALVPCLTKH 365 (644)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEEC----
T ss_pred cCcceeecchhhcCCCCCcEEEEEeccccc
Confidence 00 1158999999999999999887543
No 144
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.04 E-value=5.4 Score=27.08 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=42.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+-.+|....+.|... +|.+-..-.-.-++..+..+||...
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 13 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp EEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc
Confidence 367899999999999998877999888877654 4444333322345888889998754
No 145
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=81.65 E-value=5.2 Score=27.75 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=42.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....|.|... +|..-..-.-.=.+..+..+||+..-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3568999999999999888 8999888888654 45543332223358888899987653
No 146
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=81.21 E-value=3.5 Score=29.28 Aligned_cols=82 Identities=9% Similarity=0.133 Sum_probs=42.7
Q ss_pred CceEEEEEccCCce-----EEEEeCCCCcHHHHHHHHHHHhcccccc--ccCcccccccccccee-------EEecCCcc
Q 030379 64 SAMRISILKLDGTS-----FDVAVMNSATVKDLKLAIKKKVNDMEQS--NLGHRHISWKHVWANY-------CLSHQNQK 129 (178)
Q Consensus 64 ~AMkLtV~k~dg~~-----~~V~V~~sATV~DLKkAI~~~~~~~~~r--~~g~~~ISW~~VW~~~-------~L~~~g~k 129 (178)
.-|+|+|+-...=. -.++++ .+||.||..++...++..... +.| .+...+ .+..+|+.
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g-------~l~~~v~~~~~~~~v~VNg~~ 73 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKG-------DEKSEILILCGSINILINGNN 73 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSC-------CTTSSCCCBCSSCEEEETTSC
T ss_pred CceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhccc-------ccccceeccccccEEEECCEE
Confidence 34677775432100 134444 689999999998876532110 011 011122 33344432
Q ss_pred ccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 130 LLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 130 LldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
+ ... .-.++-+++||+|.|.+-+.
T Consensus 74 v-~~~-~~~~~~L~~gD~V~i~ppv~ 97 (99)
T 2l52_A 74 I-RHL-EGLETLLKDSDEIGILPPVS 97 (99)
T ss_dssp G-GGT-TSTTSCCCTTEEEEEECCCS
T ss_pred c-ccc-CCCCCCCCCCCEEEEECCCC
Confidence 2 111 11245699999999988653
No 147
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=80.34 E-value=2 Score=28.49 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=37.2
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
....++++..+||.||..++...++ . |..+ .+.+.-+|+.+ +. +.-+++||+|.|.+-+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p---~---------~~~v--~~~v~vNg~~v-~~-----~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP---Q---------INNK--KFQVAVNEEFV-QK-----SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG---G---------GTTC--CCEEEETTEEE-CT-----TSEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc---c---------hhcc--eEEEEECCEEC-CC-----CCCcCCCCEEEEECCC
Confidence 3456677888999999998877653 1 1111 11333445433 32 3569999999998765
No 148
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=80.29 E-value=5.9 Score=27.51 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=42.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|... +|.+-.+-.-.=.+..+..+||...-
T Consensus 29 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 4678999999999999888 7898877777654 45543333333458899999997653
No 149
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=79.88 E-value=4.8 Score=36.36 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 48 KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 48 ~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
.|+..||.. +..|+.|.+.|...||+...|.|+.++|+.||=..|.+.....
T Consensus 202 ~Ps~~Ei~a---~~~~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~ 253 (555)
T 3au4_A 202 VPSRDEIEA---LIHRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAME 253 (555)
T ss_dssp CCCHHHHHH---HHTTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHH---HHhCCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCC
Confidence 457788765 4557889999999999999999999999999999999998653
No 150
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=79.50 E-value=11 Score=35.78 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCceEEEEEccC---CceEEEEeCCCCcHHHHHHHHHHHhc-cccccc-c--Ccccccccccc-ceeEEecCC--ccccC
Q 030379 63 GSAMRISILKLD---GTSFDVAVMNSATVKDLKLAIKKKVN-DMEQSN-L--GHRHISWKHVW-ANYCLSHQN--QKLLD 132 (178)
Q Consensus 63 G~AMkLtV~k~d---g~~~~V~V~~sATV~DLKkAI~~~~~-~~~~r~-~--g~~~ISW~~VW-~~~~L~~~g--~kLld 132 (178)
...|+|.|.-.+ .+.++|.|-+-.||.+.|..|-.++- ..|.++ + ..-..-|++== .+..|.-.. .++..
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 345788886544 36689999989999999998887752 112221 0 01112232210 011111110 01111
Q ss_pred ---CcchhhhcCCCCCCEEEEEeeee
Q 030379 133 ---ENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 133 ---D~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
--.||..|+|.||.+|.++++..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 11589999999999999999884
No 151
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=78.90 E-value=4.4 Score=29.13 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCC
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 142 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGI 142 (178)
|++|+|.+ ..+|..+-+.|+++.|..+|...+...++..+. ..=.+.|+.==..+|.+.+..-| ...|+-|-+
T Consensus 4 ~~~vkvK~-~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~---~~f~lky~DEeGD~itisSd~EL---~eAl~l~~~ 76 (89)
T 1vd2_A 4 GSQVRVKA-YYRGDIMITHFEPSISFEGLCNEVRDMCSFDNE---QLFTMKWIDEEGDPCTVSSQLEL---EEAFRLYEL 76 (89)
T ss_dssp SSCEEEEE-ESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSS---CCEEEEECCSSSCCEECCSHHHH---HHHHHHHHH
T ss_pred CCeEEEEE-EeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC---CeEEEEEECCCCCcccccCHHHH---HHHHHHHHc
Confidence 67899999 566888888999999999999999999875322 11234454433455555555433 334444444
Q ss_pred CCCCEE
Q 030379 143 RNNSQV 148 (178)
Q Consensus 143 kdgd~L 148 (178)
...++|
T Consensus 77 n~~~~l 82 (89)
T 1vd2_A 77 NKDSEL 82 (89)
T ss_dssp TSCCCE
T ss_pred cCCCCE
Confidence 344333
No 152
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=78.50 E-value=7.3 Score=26.92 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=41.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEc--cCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k--~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-+||..+.+ .+|.-..+.|.+ .+|.+-..-.-.=.+..+..+||+..-
T Consensus 23 fV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 5678999999999998876 689887777765 345553322223358889999998653
No 153
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=78.46 E-value=6.7 Score=27.60 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=42.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|..+.+ .+|.-..+.|.+..+.+-..-.-.=.+..+..+||+..-
T Consensus 9 fV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC
Confidence 3568999999999998876 689988888877666553222223358899999998653
No 154
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.22 E-value=7.2 Score=26.27 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=41.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-CceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.+ .+|.-..+.+.... |.+-..-.-.=.+..+..+||...-
T Consensus 21 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICK-AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999998887 68988788776543 4433222223358889999987653
No 155
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=77.52 E-value=5.4 Score=37.50 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 48 KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 48 ~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
-||..|+.+.. .++.|.+.|...||+...|.|+.++|+.||=..|.......
T Consensus 249 ~Ps~~Ei~Ai~---~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~ 300 (655)
T 3pvl_A 249 PPSWLELQATK---SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLK 300 (655)
T ss_dssp CCCHHHHHHHH---HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHH---cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCc
Confidence 36888888764 57889999999999999999999999999999999998653
No 156
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.19 E-value=7.8 Score=26.68 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=41.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|... +|.+-..-.-.-.+..+..+||...-
T Consensus 19 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 19 FVANLDYKVGWKKLKEVFS-MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999998887 7898877777543 44443222223358889999988653
No 157
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.18 E-value=6.6 Score=26.30 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCC-----ceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG-----TSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg-----~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|.-..+.|..... .+-..-.-.=.+..+..+||...
T Consensus 9 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l 70 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70 (98)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998886 789888888765332 33222222335888888998854
No 158
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.52 E-value=6.2 Score=26.79 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=41.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|....|.|... +|.+-..-.-.=.+..+..+||...
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp EEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 4678999999999998776 6898888887654 4554333322345889999998864
No 159
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=76.28 E-value=9.3 Score=25.97 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=41.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.. .+|.-..+.|... +|.+-..-.-.=.+..+..+||...-
T Consensus 33 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 33 LVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3667999999999998887 7898877777543 44443333223458899999998653
No 160
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=76.09 E-value=4.4 Score=27.57 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=42.4
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|+|+| +|+.+++ ..+||.||-... ...+. .+.+..+|+.+ ..+...++-+++|
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~l----~~~~~---------------~vAV~vNg~iV--pr~~~~~~~L~dG 53 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTEL----DCTGG---------------HFAVALNYDVV--PRGKWDETPVTAG 53 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHHT----TCCSS---------------SCEEEESSSEE--CHHHHTTCBCCTT
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHHc----CCCCC---------------cEEEEECCEEC--ChHHcCcccCCCC
Confidence 67777 8887655 568999997643 22222 12455667644 3556667789999
Q ss_pred CEEEEEeeee
Q 030379 146 SQVQFVPFVL 155 (178)
Q Consensus 146 d~L~F~~rl~ 155 (178)
|.|-++.-+.
T Consensus 54 D~veIv~~Vg 63 (73)
T 2kl0_A 54 DEIEILTPRQ 63 (73)
T ss_dssp CEEEEECCCC
T ss_pred CEEEEEcccc
Confidence 9999988774
No 161
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=75.54 E-value=2.3 Score=29.45 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=43.3
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccc-cccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM-EQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~-~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
|+|+| ||+.+++..+..+||.||-.... .. +. .+.+..+|+.+ ..+...++-+++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l~----~~~~~---------------~vAVavNg~iV--pr~~~~~~~L~d 56 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSALK----VAQAE---------------YVTVELNGEVL--EREAFDATTVKD 56 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHHT----CSCTT---------------TCCEEETTEEC--CTTHHHHCEECS
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHcC----CCCCC---------------cEEEEECCEEC--ChHHcCcccCCC
Confidence 77888 88875542116789999977553 11 11 12455667644 355666778999
Q ss_pred CCEEEEEeeee
Q 030379 145 NSQVQFVPFVL 155 (178)
Q Consensus 145 gd~L~F~~rl~ 155 (178)
||.|-++.-+.
T Consensus 57 GD~IEIv~~Vg 67 (78)
T 2k5p_A 57 GDAVEFLYFMG 67 (78)
T ss_dssp SBCEEECCCCC
T ss_pred CCEEEEEeeec
Confidence 99998887764
No 162
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=75.31 E-value=2.5 Score=30.94 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=40.3
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccc--cceeEEecCCc-cc-----cCCcchhhhcCCCCCCEE
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHV--WANYCLSHQNQ-KL-----LDENSALQDCGVRNNSQV 148 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~V--W~~~~L~~~g~-kL-----ldD~~tL~dyGIkdgd~L 148 (178)
..+|+|++++|+.||=..+...-.+.-. +++ |+ +. =++--|...+- -| -+-.++|.+.|+.+|++|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk-~PS---lt--t~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei 79 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMK-SPA---IT--ATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQEL 79 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCS-SCE---EE--EEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhcc-CCe---ee--eecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEE
Confidence 4578889999999999988884321111 111 10 00 00112333331 12 124678999999999998
Q ss_pred EEE
Q 030379 149 QFV 151 (178)
Q Consensus 149 ~F~ 151 (178)
++-
T Consensus 80 ~Vt 82 (98)
T 1y8x_B 80 AVA 82 (98)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 163
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=75.02 E-value=3.2 Score=28.38 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=40.0
Q ss_pred eEEEEEccCCce-EEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTS-FDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~-~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
|+|+|+-. |.. -.++++..+||+||=+. +...++ .....-+|+.+..|. +.+
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~---------------~VvV~vNG~~v~~d~-------~l~ 53 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADLVRA----VDLSPH---------------EVTVLVDGRPVPEDQ-------SVE 53 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHHHHT----TCCCSS---------------CCCEECCCCCCCTTS-------SSC
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHHHHH----cCCCcc---------------eEEEEECCEECCHHH-------CCC
Confidence 78888444 554 45789999999998543 233222 113445565554444 456
Q ss_pred CCEEEEEeeeec
Q 030379 145 NSQVQFVPFVLS 156 (178)
Q Consensus 145 gd~L~F~~rl~~ 156 (178)
||.|.+++-+..
T Consensus 54 GD~VeIv~~V~G 65 (74)
T 2l32_A 54 VDRVKVLRLIKG 65 (74)
T ss_dssp CCCEEECSSCSC
T ss_pred CCEEEEEEeecc
Confidence 999998877644
No 164
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=74.42 E-value=10 Score=25.64 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=41.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..|.|... +|.+-..-.-.=.+..+..+||...-
T Consensus 19 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 19 FVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 3568999999999998887 7898888877654 34332222223458888899987653
No 165
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=74.40 E-value=5.6 Score=26.92 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=36.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhcccccc----ccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeee
Q 030379 80 VAVMNSATVKDLKLAIKKKVNDMEQS----NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 80 V~V~~sATV~DLKkAI~~~~~~~~~r----~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl 154 (178)
++++..+||.||..++...++..... ..| +...+.+..+|+.+ ... .-.+.-+++||+|.|.+-+
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g--------~~~~v~v~vN~~~v-~~~-~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNN--------LFKNVIILVNGNNI-TSM-KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC--------STTTCEEEESSSBG-GGT-CSSSCBCCTTCEEEEECCT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccC--------cCcceEEEECCEEc-ccc-CCCCcCCCCCCEEEEeCCC
Confidence 45666789999999998876422110 001 01122333444322 211 1124459999999998765
No 166
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=74.33 E-value=24 Score=27.52 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=50.7
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhccccccccCc----ccccc-----ccccceeEEecCCccccCCcchhhhcCCCCCCE
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGH----RHISW-----KHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 147 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~----~~ISW-----~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~ 147 (178)
++.|-.=.+||+.||=.-|....+.. |..|. +.|++ +|+-+.+-.++.|.+-.+|++||.+.+..-||-
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~a--r~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEA--RKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGG--GSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccc--cCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 34555577899999999998887543 22222 11111 345555666677777778999999999999998
Q ss_pred EEEEe
Q 030379 148 VQFVP 152 (178)
Q Consensus 148 L~F~~ 152 (178)
|-...
T Consensus 133 idvaI 137 (143)
T 4a6q_A 133 LDIAI 137 (143)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 167
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=74.24 E-value=5.3 Score=26.54 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=36.3
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHhcccccc-ccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeee
Q 030379 77 SFDVAVMNSATVKDLKLAIKKKVNDMEQS-NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 155 (178)
Q Consensus 77 ~~~V~V~~sATV~DLKkAI~~~~~~~~~r-~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~ 155 (178)
.+.++ +..+||.||..++...++..... ..+ .+.+.-+++ ..+ .+.-+++||+|.|.+-+.
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~-----------~~~v~vN~~-~v~-----~~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDG-----------KLLAAVNQT-LVS-----FDHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCT-----------TCEEEETTE-ECC-----TTCBCCTTCEEEEECCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCC-----------CEEEEECCE-ECC-----CCCCCCCCCEEEEeCCCC
Confidence 44555 56789999999988765422110 001 112333343 332 245699999999988663
No 168
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=73.99 E-value=1.9 Score=31.90 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=43.9
Q ss_pred ceEEEEEccCC------ceEEEEeCC----CCcHHHHHHHHHHHhcccccc---ccCccccccccccceeEEecCCcccc
Q 030379 65 AMRISILKLDG------TSFDVAVMN----SATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLL 131 (178)
Q Consensus 65 AMkLtV~k~dg------~~~~V~V~~----sATV~DLKkAI~~~~~~~~~r---~~g~~~ISW~~VW~~~~L~~~g~kLl 131 (178)
+|+|+|+...| +...|+|+. .+||.||=..+.+.+.....+ +.|. |. |...+ + .|.
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~----~~-lrpgI-l-----VLV 72 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTG----QT-LRPGI-L-----VLV 72 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSS----SS-BCTTE-E-----EEE
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCC----cc-cCCCe-E-----EEE
Confidence 46777765443 334677773 369999988888876421110 1110 00 11111 1 122
Q ss_pred CCc--chhh--hcCCCCCCEEEEEeeeec
Q 030379 132 DEN--SALQ--DCGVRNNSQVQFVPFVLS 156 (178)
Q Consensus 132 dD~--~tL~--dyGIkdgd~L~F~~rl~~ 156 (178)
+|. ..|. +|-+++||+|.|++-+..
T Consensus 73 Ng~d~e~l~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 73 NSCDAEVVGGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp SSSBHHHHTSSCCCCCSSCEEEEEECCCC
T ss_pred CCeeeeccCCcccCCCCcCEEEEeCCCcc
Confidence 222 2222 477999999999886643
No 169
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.39 E-value=11 Score=25.31 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=41.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+... +|.+-..-.-.=.|..+..+||...-
T Consensus 12 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 12 FVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp EEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred EEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3568999999999998887 6898777776544 45554333334468889999987653
No 170
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.29 E-value=7.3 Score=26.39 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=40.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|....+.+ +.++. =.+..+..+||...-
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~g~afV~--f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 19 HVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVT--FENSADADRAREKLH 76 (103)
T ss_dssp EEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCCEEEEE--ESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcEEEEEE--ECCHHHHHHHHHHhC
Confidence 4668999999999998876 68988888887654432 33332 347888888887653
No 171
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=73.25 E-value=5.9 Score=28.78 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=37.2
Q ss_pred CceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCcccc-CCcchhhhcC
Q 030379 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLL-DENSALQDCG 141 (178)
Q Consensus 75 g~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLl-dD~~tL~dyG 141 (178)
++...|.|.++-||..||.+|++...-.++.| .|+|+|+.+. +.+..-+.|-
T Consensus 23 a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q---------------~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 23 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQ---------------ELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp TEEEEEEEETTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEEECCCTTCBGGGSC
T ss_pred ceEEEEEeccchHHHHHHHHHHHHhCCCHHHH---------------HHHhCCCccccCCCCccccCC
Confidence 45567888899999999999999987555522 6999996553 3444444553
No 172
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.24 E-value=8.6 Score=25.90 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=37.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.. .++ .+++...+.+|.+-..-.-.=.+..+..+||...-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~~-~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2fc8_A 19 FVKGLSEDTTEETLKESFD-GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp EEECCCTTCCHHHHHHTST-TCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EEeCCCCccCHHHHHHHhc-CCe-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999998887 443 33333333455553333233458899999988653
No 173
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=72.94 E-value=11 Score=26.81 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=31.4
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcccc
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~ 103 (178)
.|+|.|... -.+.|.||..++..+|...|.+++...+
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~ 41 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRL 41 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCG
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 388888776 5778889999999999999999997543
No 174
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=72.89 E-value=14 Score=23.63 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=39.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+||.++|-++|....+ .+|.-..+.+... .|.+-..-.-.=.+..+...|+...-
T Consensus 6 V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 568999999999998875 6898888877644 34443222222357888888887653
No 175
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.85 E-value=10 Score=24.53 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 74 dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
||+.+++ ..+||.||-..+. ..+. .+....+++.+ . ...-.+.-+++||+|.|.+-
T Consensus 5 Ng~~~~~---~~~tv~~ll~~l~----~~~~---------------~v~vavN~~~v-~-~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL---EGKTLKEVLEEMG----VELK---------------GVAVLLNEEAF-L-GLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC---TTCCHHHHHHHHT----BCGG---------------GEEEEETTEEE-E-GGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc---CCCcHHHHHHHcC----CCCC---------------cEEEEECCEEC-C-ccccCCcCCCCCCEEEEEee
Confidence 8887654 5789999988773 1111 12344445433 2 22334456999999999886
Q ss_pred ee
Q 030379 154 VL 155 (178)
Q Consensus 154 l~ 155 (178)
+.
T Consensus 61 V~ 62 (64)
T 2cu3_A 61 MQ 62 (64)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 176
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=72.60 E-value=14 Score=23.77 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=39.4
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
|.++|..-+|+. ++++..+|+.||-+.+....... ......+|+ +.+- ++-+.+|
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~~-----------------~vaa~vNg~-lvdl-----~~~L~~~ 55 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGDH-----------------CIGAKVNHK-LVPL-----SYVLNSG 55 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHHT-----------------EEEEEETTE-ECCT-----TCBCCSS
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccccc-----------------eEEEEECCE-EeCC-----CcCcCCC
Confidence 667775557876 56688899999988775433210 001123454 4333 3557789
Q ss_pred CEEEEEeee
Q 030379 146 SQVQFVPFV 154 (178)
Q Consensus 146 d~L~F~~rl 154 (178)
+.|-|+.-.
T Consensus 56 ~~Veivt~~ 64 (73)
T 2kmm_A 56 DQVEVLSSK 64 (73)
T ss_dssp SBEEEEECC
T ss_pred CEEEEEECC
Confidence 999988654
No 177
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.38 E-value=17 Score=24.22 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=41.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCce-EEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAM-RISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AM-kLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.. .+|.-. .+.|... .|.+-.+-.-.=.+..+..+||+..-
T Consensus 13 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 13 WMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp EECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc
Confidence 4678999999999988775 688866 6666543 45554443334468899999997543
No 178
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=70.36 E-value=16 Score=24.50 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=40.2
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceE--------EEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMR--------ISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMk--------LtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+||.++|-+||..+.+ .+|.... +.|... .|.+-..-.-.=.+..+..+||+..-
T Consensus 18 V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 18 VQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp EECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 568999999999998887 7888766 666543 45553333223458888899987653
No 179
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=69.32 E-value=15 Score=26.82 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--CceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+.+ .+|....|.|.... +.+-.+..-.=.+..+..+||...
T Consensus 43 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 43 YVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 4677999999999998875 78988888886543 444322222335888999999864
No 180
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=69.06 E-value=18 Score=23.87 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=40.4
Q ss_pred ccCCCCCCCHHHHHHHHhhhcC--CceEEEEEc--cCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMG--SAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G--~AMkLtV~k--~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+||.++|-++|..+.+ .+| .-..+.|.. .+|.+-..-.-.=++..+..+||+..-
T Consensus 6 V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 6 IGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp EESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC
Confidence 568999999999998874 688 665665544 466664444334568899999998664
No 181
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=68.97 E-value=8.8 Score=25.02 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-++|....+ .+|.-..+.+... +|.+ +.++- =.+..+..+|+
T Consensus 10 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~a~~a~ 65 (89)
T 3ucg_A 10 YVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIE--FSDKESVRTSL 65 (89)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEE--ESSTHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEE--ECCHHHHHHHH
Confidence 3568999999999999887 7898888887654 3443 43332 23667788888
No 182
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.80 E-value=7.6 Score=25.28 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.. .+|.-..+.|.... |.+ +.++ .=.+..+..+||+..-
T Consensus 10 v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFV--DFDSPSAAQKAVTALK 68 (85)
T ss_dssp EESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEE--EESCHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEE--EECCHHHHHHHHHHhc
Confidence 567999999999998877 78988888876542 333 4333 2247888888887543
No 183
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.67 E-value=17 Score=25.04 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|-+||..+.. .+|....+.|... | |.++. -++..+.++||+..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-g--~afV~--f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-G--TGVVE--FVRKEDMTYAVRKL 70 (108)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-T--EEEEE--ESSHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-C--EEEEE--ECCHHHHHHHHHHH
Confidence 4567999999999998876 7998888888654 3 33332 34788999999865
No 184
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=68.52 E-value=10 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=32.5
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
++|||.+ --++.-|-+-||.+.+..||+..|......
T Consensus 11 ~~~KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6799999 556789999999999999999999988753
No 185
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.43 E-value=11 Score=24.94 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....+.+.... |.+ +.++ .=.+..+..+||...-
T Consensus 9 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFI--TFSDSECARRALEQLN 68 (95)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEE--EESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEE--EECCHHHHHHHHHHhC
Confidence 3568999999999998886 68988888886643 333 3333 2347888899988653
No 186
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.62 E-value=21 Score=23.41 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=40.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--CceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.... |..-..-.-.=.+..+..+||...-
T Consensus 19 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 19 GVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 3568999999999998886 58988788776542 4443222223358888899988653
No 187
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.41 E-value=17 Score=24.19 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-++|..+.. .+|.-..|.+.+..|. |.++-= ++..+..+||.
T Consensus 12 ~V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~~g~-~afV~f--~~~~~a~~ai~ 63 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFL-AFGPVASVVMDKDKGV-FAIVEM--GDVGAREAVLS 63 (94)
T ss_dssp EEECCCTTCCHHHHHHHGG-GTSCEEEEEECSSSCC-EEEEEE--SSHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEcCCCCc-EEEEEE--CCHHHHHHHHh
Confidence 3568999999999998887 7898888755555555 655432 36888888887
No 188
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.40 E-value=7.9 Score=26.26 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc---CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL---DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~---dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|....|.|... +|.+ |.++ .=.|..+..+||...
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFV--DFITKQDAKKAFNAL 78 (107)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEE--EESSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEE--EECCHHHHHHHHHHh
Confidence 3568999999999998876 5898888888655 4443 3332 235888999999875
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=66.33 E-value=20 Score=25.40 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=40.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||+++|-++|..+.+ .+|.-..+.+.+. +|.+-..-.-.=++..+-..|+...-
T Consensus 7 v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 7 VNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 568999999999998886 6898877777654 45443322223358889999998643
No 190
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.91 E-value=9.2 Score=25.62 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.... |.+ +.++. =.+..+..+||...-
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 12 FVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVT--FMFPEHAVKAYAEVD 71 (99)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEE--ESSHHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEE--ECCHHHHHHHHHHhC
Confidence 3568999999999998886 78988777775542 332 33332 247888888887643
No 191
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.87 E-value=11 Score=25.37 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=40.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....+.|... ++.+ +.++. =.+..+..+||+..-
T Consensus 16 ~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 16 FVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVT--FENIDDAKDAMMAMN 75 (102)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEE--CSSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEE--ECCHHHHHHHHHHhC
Confidence 3578999999999998886 6898888888654 2332 44432 358888888987653
No 192
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=65.52 E-value=25 Score=25.06 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=40.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
.+.+||.++|-+||..+.+ .+|.-..+.+.+..| |.++-- .++.+-+.||...-
T Consensus 25 ~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~~kg--~AFVef--~~~~~A~~Av~~ln 78 (100)
T 3r27_A 25 HIRGLIDGVVEADLVEALQ-EFGPISYVVVMPKKR--QALVEF--EDVLGACNAVNYAA 78 (100)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEETTTT--EEEEEE--SSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEcCCC--EEEEEE--CCHHHHHHHHHHhc
Confidence 3568999999999987664 799998888876544 444433 38899999998764
No 193
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=65.09 E-value=11 Score=29.03 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEe
Q 030379 85 SATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 85 sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~ 152 (178)
.||..||=..+...+.+-.+ ||=.. -.+-.|+|+--==.+-.++|.+.||++|+.|++..
T Consensus 19 ~~TL~dLV~~l~~~~gy~~e-------iSV~~-~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQD-------ISLLD-ASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSS-------EEEEE-TTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCc-------EEEEe-cCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 48999998888777653211 11000 00113455542112245899999999999999875
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=63.96 E-value=7.8 Score=27.25 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=40.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..|.|... +|.+ +.++ .=.+..+..+||+..-
T Consensus 26 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLV--EYETYKEAQAAMEGLN 85 (126)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEE--EECCHHHHHHHHHHhC
Confidence 4578999999999998886 7898877777544 3433 3333 2347888888988653
No 195
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=63.72 E-value=16 Score=26.76 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=31.8
Q ss_pred CceEEEEEccC-------CceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 64 SAMRISILKLD-------GTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 64 ~AMkLtV~k~d-------g~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
++|+|.|.-.+ +..+.+.|+.+.+..||...|..++...
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 35888886543 4568999999999999999999999753
No 196
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=63.69 E-value=16 Score=25.74 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=40.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|....|.|.... |.+ |.++ .=.+..+..+||+..
T Consensus 11 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV--~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 11 FIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDRTSKSRGFAFI--TFENPADAKNAAKDM 68 (116)
T ss_dssp EEECCTTTCCHHHHHHHHH-TSSCCSEEEEECSTTTTCCCEEEE--ECSSHHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcccEEEE--EECCHHHHHHHHHHh
Confidence 3678999999999998876 68988888886643 333 3333 335888889998754
No 197
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=63.66 E-value=11 Score=25.14 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.+ .+|....+.|.... |.+ +.++ .=.+..+..+||+..-
T Consensus 7 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFI--EFRDLESSASAVRNLN 65 (96)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEE--EESSHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEE--EECCHHHHHHHHHHhC
Confidence 568999999999998887 78988888875542 333 3332 2347888889987653
No 198
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.21 E-value=9.1 Score=26.55 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.. .+|.-..+.|.... +.+ |.++ .=.+..+..+||...
T Consensus 21 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~Ai~~~ 79 (116)
T 2cqd_A 21 FVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFV--TMADRAAAERACKDP 79 (116)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEE--EESSHHHHHHHHTCS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEE--EECCHHHHHHHHHhC
Confidence 4668999999999999887 78998888886542 333 4333 224788888887653
No 199
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.06 E-value=16 Score=24.66 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|....+.. |.++. =.+..+..+||...-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~afV~--f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 19 YVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTSNDPYCFVE--FYEHRDAAAALAAMN 76 (103)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCSSCCEEEEE--ESSHHHHHHHHHHHT
T ss_pred EEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCCCCCEEEEE--ECCHHHHHHHHHHhC
Confidence 4668999999999988774 68988888887654432 44332 248888888988553
No 200
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=63.01 E-value=24 Score=23.20 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=40.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|... +|.+-..-.-.=.+..+..+||...-
T Consensus 20 ~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 20 FVGNLEARVREEILYELFL-QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999988875 5898878887653 24433222223347788888888653
No 201
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.82 E-value=22 Score=24.03 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.+ .+|.-..+.|... .|.+-.+-.-.=.+..+..+||..
T Consensus 20 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4678999999999998876 5898888887664 344322221122356777888876
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=62.59 E-value=23 Score=25.98 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.+ .+|.-..+.|.+. +|.+ +.++ .=++..+-.+|+..
T Consensus 17 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 17 FIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFV--TYATVEEVDAAMNA 74 (196)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEE--EESSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEE--EeCCHHHHHHHHhc
Confidence 4678999999999998887 7899878877664 3444 4333 23588899999976
No 203
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.97 E-value=28 Score=23.36 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.+ .+|.-..+.|... +|.+-..-.-.=.+..+..+||..
T Consensus 19 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4567999999999998875 5898878877654 355533332233578888889884
No 204
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=61.69 E-value=22 Score=26.06 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=41.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.. .+|.-..+.|... +|.+-..-.-.=.|..+..+|+..
T Consensus 108 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 108 FVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 4667999999999999887 7898888888665 455533333334578888888875
No 205
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=61.51 E-value=9.6 Score=28.03 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHhc
Q 030379 63 GSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 63 G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
|++|++++.+.++.. +.|+|+. .+++.++.+.+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v~~----~~~~~~~~~~~~ 36 (121)
T 1p9y_A 1 GSHMQVSVETTQGLGRRVTITIAA----DSIETAVKSELV 36 (121)
T ss_dssp ---CEEEEEECSTTEEEEEEEECH----HHHHHHHHHHHH
T ss_pred CCcceEEEEECCCcEEEEEEEECH----HHHHHHHHHHHH
Confidence 789999999999877 4565654 666666666664
No 206
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=60.98 E-value=26 Score=25.99 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=41.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|....|.|... .|.+-.+-.-.=.|..+...||...
T Consensus 76 ~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh
Confidence 3567999999999998875 6898888888654 4544333333345888888898765
No 207
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=60.65 E-value=29 Score=24.78 Aligned_cols=59 Identities=27% Similarity=0.270 Sum_probs=42.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
++.+||.++|-++|....+ .+|.-..+.+.+. +|.+-..-.-.=.+..+-.+|+...-.
T Consensus 99 ~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 99 FIGMISKKCTENDIRVMFS-SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 3568999999999998886 7898877777554 444433332334588999999987653
No 208
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.31 E-value=13 Score=25.37 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.+- +|.-..+.|.. ++.+ |.++. =.+..+..+||+..-
T Consensus 26 ~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~-~~~~~g~afV~--f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 26 YVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKN-RRGGPPFAFVE--FEDPRDAEDAVYGRD 82 (109)
T ss_dssp EEESCCTTCCHHHHHHHHGG-GSCEEEEEECC-SSSSSCCEEEE--ESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE-CCCCCcEEEEE--ECCHHHHHHHHHHcC
Confidence 36789999999999988764 89888888844 3332 43332 248889999987653
No 209
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=60.28 E-value=10 Score=23.97 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=36.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~ 96 (178)
+.+||+++|-++|..... .+|.-..+.+.... |.+ +.++- =.+..+.++|++
T Consensus 4 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~a~~a~~ 59 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVT--FESEDIVEKVCE 59 (75)
T ss_dssp EECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEE--CSCHHHHHHHHS
T ss_pred EecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEE--ECCHHHHHHHHH
Confidence 568999999999998876 58988888775542 333 44332 236677777765
No 210
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=60.28 E-value=18 Score=26.10 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....|.|.... |.. |.++ .=.+..+..+||...-
T Consensus 50 ~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV--~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 50 GVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFV--YFENVDDAKEAKERAN 109 (129)
T ss_dssp CEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEE--EESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEE--EECCHHHHHHHHHHhC
Confidence 4678999999999998886 68988888886532 332 3333 2348889999998654
No 211
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=60.04 E-value=16 Score=23.45 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEc--cCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k--~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.. .+|..-..-.-.=.+..+..+|++..-
T Consensus 11 ~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 11 YVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 3578999999999998775 689887777643 334442222112347888888987553
No 212
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=59.31 E-value=47 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=21.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHhc
Q 030379 79 DVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~ 100 (178)
.|.|+.++|..+|=.+|+.+|.
T Consensus 25 ri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 25 RIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 8999999999999999999996
No 213
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=58.81 E-value=29 Score=22.46 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|.... -.+|.-..+.+... .|.+-..-.-.=.+..+..+|++.
T Consensus 15 ~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 356899999999999887 46898878877654 354432222223477788888854
No 214
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=58.54 E-value=21 Score=25.59 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
.+.+||.++|-++|..+.. .+|.-..+.+... +|.+-..-.-.=.+..+-.+|+...-
T Consensus 98 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (172)
T 2g4b_A 98 FIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT
T ss_pred EEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 3567999999999999887 7898888887665 45443332222346777778887643
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.48 E-value=15 Score=24.95 Aligned_cols=56 Identities=7% Similarity=0.114 Sum_probs=40.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.|.... |.+ |.++ .=.+..+..+||...-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 19 FIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFA--QFMTQEAAQKCLAAAS 78 (111)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEE--EESSHHHHHHHHHHHC
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEE--EECCHHHHHHHHHHhc
Confidence 4678999999999998886 78988777775432 333 4333 2348888899988664
No 216
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.37 E-value=31 Score=22.58 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=37.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-+||..+..-- ....+.|... +|.+-..-.-.=.+..+..+||.
T Consensus 14 ~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 14 KLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp EEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 467899999999999888744 5666666543 45543333233458899999998
No 217
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=58.13 E-value=22 Score=23.41 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCc--eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~A--MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.+ .+|.. +.+...+.+|.+-..-.-.=.+..+..+||+..-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 19 KVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp EEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 3568999999999998775 56654 3444444555553333233458889999998643
No 218
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=57.73 E-value=27 Score=31.28 Aligned_cols=69 Identities=12% Similarity=-0.027 Sum_probs=41.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc---cc-ccc--------ccCccccccccccceeEEecCCccccCCcchhhhcCCCCC
Q 030379 78 FDVAVMNSATVKDLKLAIKKKVN---DM-EQS--------NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 145 (178)
Q Consensus 78 ~~V~V~~sATV~DLKkAI~~~~~---~~-~~r--------~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdg 145 (178)
+.|.|+...|+.|.=++.++..+ +. .+. =.|.. =..==++||..+.+.+.. +.=..+|-++||
T Consensus 315 ~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~---~~~~~~~YW~l~~~g~~~--~~G~~~y~~~~g 389 (399)
T 2pmv_A 315 INVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIA---ENVNHKTYWQFLSGVTPL--NEGVADYIPFNH 389 (399)
T ss_dssp EEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCB---CCGGGTEEEEEEETTEEC--SSCTTTCCCCTT
T ss_pred eEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCc---cCcCCCeeEEEEECCeec--ccchhheecCCC
Confidence 68999999999998887776621 11 111 01110 000013566666653332 345788999999
Q ss_pred CEEEEE
Q 030379 146 SQVQFV 151 (178)
Q Consensus 146 d~L~F~ 151 (178)
|.|.|.
T Consensus 390 d~I~f~ 395 (399)
T 2pmv_A 390 EHITAN 395 (399)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999984
No 219
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=57.72 E-value=36 Score=22.67 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.+ .+|.-..+.+... ..-+.++- =.+..+..+||...-
T Consensus 5 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~afV~--f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFS-YYGPLRTVWIARN-PPGFAFVE--FEDPRDAEDAVRGLD 58 (101)
T ss_dssp EECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-SSSEEEEE--CSSHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-CCCEEEEE--ECCHHHHHHHHHHHC
Confidence 568999999999998876 6898888888655 23344432 347888888888653
No 220
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=57.60 E-value=46 Score=24.20 Aligned_cols=82 Identities=11% Similarity=0.200 Sum_probs=45.0
Q ss_pred CceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHhccccccccCcccccc-ccc-----cceeEEec-CCccccCCc
Q 030379 64 SAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW-KHV-----WANYCLSH-QNQKLLDEN 134 (178)
Q Consensus 64 ~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW-~~V-----W~~~~L~~-~g~kLldD~ 134 (178)
..++|+|...++.. |.|. +.-.|+.|.=++... +.. .++.-|+ .|+= ..+ =+.||... +|+ +. .
T Consensus 7 k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~~-ve~-e~s~~G~-fITsI~G~~ad~~~~~yW~~~vng~-~~--~ 79 (101)
T 3u7z_A 7 KHITVTVIHGDQTENVFEFD-TDAKYLGEVLESENL-VDG-ESGEYGL-FITTVDEETADDSKQQWWCITKGGE-QV--N 79 (101)
T ss_dssp EEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTTC-EEE-ECCTTSC-EEEEETTEECCGGGTEEEEEEETTE-EC--C
T ss_pred eEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcCc-ccc-ccccccc-eEEEEcCEecCCCCCCEEEEEECCE-Eh--h
Confidence 45899999888866 5666 666888886655442 211 1111110 0000 000 02344434 454 33 3
Q ss_pred chhhhcCCCCCCEEEEEe
Q 030379 135 SALQDCGVRNNSQVQFVP 152 (178)
Q Consensus 135 ~tL~dyGIkdgd~L~F~~ 152 (178)
.-..+|-|+|||.+.|.-
T Consensus 80 ~Ga~~~~v~dGD~i~~~~ 97 (101)
T 3u7z_A 80 TSADQTPVSDGDAFELTL 97 (101)
T ss_dssp SCGGGCBCCTTCEEEEEE
T ss_pred hchhheEecCCCEEEEEE
Confidence 467789999999999864
No 221
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=57.35 E-value=19 Score=25.15 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-+||..+.. .+|.-..+.|... +|.+-..-.-.=.+..+..+||
T Consensus 40 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 40 YVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp EEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 4667999999999998877 7898877777653 4554333322345788888898
No 222
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.27 E-value=13 Score=25.09 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=39.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|....+.|... +|.+ |.++ .=++..+..+||...
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l 77 (105)
T 1x5u_A 19 YVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFV--EFLSEEDADYAIKIM 77 (105)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEE--EESSHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEE--EECCHHHHHHHHHHh
Confidence 4568999999999988776 5898878887654 2333 3332 235788999998764
No 223
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=56.83 E-value=13 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHHHH
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkA 94 (178)
++.|.|++ ..||+.+.|.|+++.||.|.=..
T Consensus 7 ~~~m~i~~-~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISA-TINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEE-EETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEE-EECCEEEEEecCCCCcHHHHHHh
Confidence 56788777 67999999999999999885443
No 224
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=56.64 E-value=20 Score=25.11 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.. .+|.-..+.|... | |.++ .-++..+..+||+..-
T Consensus 20 ~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-g--~afV--~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 20 VVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-G--TGVV--EFVRKEDMTYAVRKLD 72 (115)
T ss_dssp EEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-S--EEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-C--EEEE--EECCHHHHHHHHHHhC
Confidence 3567999999999998776 7898888888544 3 3332 2347899999998764
No 225
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.29 E-value=30 Score=22.63 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.+. +.++- =.+..+..+||...-
T Consensus 13 ~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~----~afV~--f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFE-RRGRVIECDVVKD----YAFVH--MEKEADAKAAIAQLN 64 (90)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCEEEEEECSS----CEEEE--ESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-cCCCEEEEEEECC----EEEEE--ECCHHHHHHHHHHhC
Confidence 3568999999999998887 6899888887533 43332 247888889988653
No 226
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=56.24 E-value=18 Score=25.54 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-CceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.. .+|.-..+.+.... |.+-..-.-.=.+..+...|++..-
T Consensus 5 V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp EEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 467999999999999887 78987778775443 3332222223358899999997654
No 227
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.22 E-value=24 Score=23.44 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCc--eEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~A--MkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.+ .+|.- ..+...+.+|.+-..-.-.=.+..+..+||+..-
T Consensus 19 ~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp EEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 3678999999999988775 56665 3444445566554333233458889999997653
No 228
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.18 E-value=10 Score=26.33 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=39.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.. .+|.-..+.+....+.+ |.++- =.+..+..+|+...-
T Consensus 34 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~kg~afV~--f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVT--FENSADADRAREKLH 90 (109)
T ss_dssp EESCCTTCCHHHHHHHGG-GTCCCSCEEECCBTTBCTTEEEEE--CCCSHHHHHHHHHHT
T ss_pred EECCCCcCCHHHHHHHHH-hcCCEEEEEEEECCCCCceEEEEE--ECCHHHHHHHHHHcC
Confidence 568999999999998776 78988888886654433 44432 346778888887543
No 229
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=55.76 E-value=29 Score=25.75 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=51.7
Q ss_pred cCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccc-cccCccccccccccceeEEecCCc--cccCCcchhh
Q 030379 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQ-SNLGHRHISWKHVWANYCLSHQNQ--KLLDENSALQ 138 (178)
Q Consensus 62 ~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~-r~~g~~~ISW~~VW~~~~L~~~g~--kLldD~~tL~ 138 (178)
..+...|.+.--+|--+.+.|+.++|+.++|..+-+....+|= ...+... .|+- .|+...++ .+.|++..|.
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~---~Y~F--~~in~~~e~Eel~DEsrrL~ 90 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDES---SYIF--VSVTQEAEREEFFDETRRLC 90 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGG---GCEE--EEEBTTSCEEEECCTTSBGG
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCcc---ceEE--EEecCCceEEEeEcCceEEE
Confidence 3466788888889999999999999999999977666543321 0011100 1211 12333343 3677888888
Q ss_pred hcCCCCCCEEEEEee
Q 030379 139 DCGVRNNSQVQFVPF 153 (178)
Q Consensus 139 dyGIkdgd~L~F~~r 153 (178)
|.-.--+ .|.++-|
T Consensus 91 dv~pf~p-iLklver 104 (108)
T 2v1y_A 91 DLRLFQP-FLKVIEP 104 (108)
T ss_dssp GSCBSSS-EEEEECC
T ss_pred eccccce-EEEEEee
Confidence 8655422 2444433
No 230
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.67 E-value=12 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEE-EEEc--cCCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRI-SILK--LDGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkL-tV~k--~dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.. .+|.-..+ .|.. ..|.+ +.++ .=.+..+..+||...
T Consensus 9 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV--~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 9 FIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFI--NFASFDASDAAIEAM 68 (96)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEE--EBSSHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEE--EECCHHHHHHHHHHc
Confidence 3568999999999988776 58887666 6644 33433 3333 235788888888754
No 231
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.40 E-value=12 Score=23.63 Aligned_cols=54 Identities=7% Similarity=0.158 Sum_probs=37.6
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+.+||.++|-+||....+ .+|....+.+.... |.+ +..+ .=.+..+..+|+...
T Consensus 5 v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFV--TFMDQAGVDKVLAQS 62 (77)
T ss_dssp EESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEE--CCCCTTHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEE--EEcCHHHHHHHHHhC
Confidence 568999999999998776 57888777776542 433 3433 234667777787754
No 232
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.27 E-value=37 Score=23.10 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....+.+....| |.++- =.+..+...||...-
T Consensus 29 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g--~afV~--f~~~~~a~~A~~~l~ 82 (109)
T 1x4g_A 29 YCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPEKG--YSFVR--FSTHESAAHAIVSVN 82 (109)
T ss_dssp EEECCSSCCCHHHHHHHHH-HHSCEEEEEEETTTT--EEEEE--ESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCCCC--EEEEE--ECCHHHHHHHHHHcC
Confidence 4678999999999998887 799988888876533 33332 247788888887653
No 233
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.08 E-value=39 Score=22.41 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.+..| +.++- =++..+..+||+..-
T Consensus 21 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~~g--~afV~--f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFD-RFGSIRTIDHVKGDS--FAYIQ--YESLDAAQAACAKMR 74 (97)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCEEEEEECSSSC--CEEEE--ESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCCCC--EEEEE--ECCHHHHHHHHHHHC
Confidence 3568999999999988775 789888888865433 44332 247888888888653
No 234
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.64 E-value=28 Score=24.23 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=40.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-+||..+.+ .+|.-..+.+.+..| +.++. =.+..+-+.||...-
T Consensus 14 ~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~g--~afV~--f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFS-RFGSLGRVLLPEGGI--TAIVE--FLEPLEARKAFRHLA 67 (111)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCSSSS--CEEEE--ESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCCCC--EEEEE--eCCHHHHHHHHHHhC
Confidence 3567999999999999887 699988888865433 33332 247888899998764
No 235
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.31 E-value=17 Score=25.15 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=37.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-+||..... .+| .+.|.|... +|.+-..-.-.=++..+..+||+
T Consensus 19 ~V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 19 HMRGLPYRATENDIYNFFS-PLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp EEESCCTTCCHHHHHHSSC-SCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3578999999999988776 477 557766533 55553232223458889999994
No 236
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=54.02 E-value=39 Score=23.29 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=41.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....+.+... .|.+-....-.=.+..+..+||+..-
T Consensus 30 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 89 (108)
T 2jrs_A 30 YVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89 (108)
T ss_dssp EEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 3678999999999998875 6888877777543 35543333233458889999988653
No 237
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=53.96 E-value=35 Score=24.92 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
.|..+..+||..-..-++||.|.+.-. ...+-| | =.|=.||-+||+-.
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~---nnEL~i--P-L~~Q~DLDkAvelL 67 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYM---NNELSI--L-LKNQDDLDKAIDIL 67 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEE---CSSCEE--E-CCSHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cceeEE--e-ccCHHHHHHHHHHh
Confidence 577899999999999999999999985 333333 2 34789999999873
No 238
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=53.64 E-value=41 Score=25.17 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=41.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcC--CceEEEEEc--cCCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMG--SAMRISILK--LDGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G--~AMkLtV~k--~dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|-++|..+. -.+| ....+.|.. .+|.+ |.++ .=++..+..+||...
T Consensus 59 fVgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV--~f~~~~~A~~Ai~~l 119 (156)
T 3n9u_C 59 YVGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEV--VVASENSVHKLLELL 119 (156)
T ss_dssp EEECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEE--EESCHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEE--EECCHHHHHHHHHHc
Confidence 466899999999999888 4789 777777754 35665 4443 235888999999874
No 239
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=53.21 E-value=44 Score=23.36 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=40.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--CceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
..+||.++|-++|..+.. .+|.-..+.|.... |.+-.+-.-.=.+..+-++||+..-
T Consensus 11 V~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 11 FARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 568999999999998875 78998888886543 4443222222357889999998654
No 240
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=53.16 E-value=36 Score=26.00 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=43.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||..+|-++|..+.. .+|.-..+.|....+.+-..-.-.=.+..+..+||+..-
T Consensus 107 ~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 107 FIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred eECCcccccHHHHHHHHHh-hcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 4668999999999998876 789988888877666553332223458899999998754
No 241
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=52.88 E-value=29 Score=22.94 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=27.8
Q ss_pred CHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++...+.-..|+.+.|+|.+ +|..+.+.|..
T Consensus 38 ~~~~~~~~l~~~~g~~v~l~v~R-~g~~~~~~v~~ 71 (91)
T 2zpm_A 38 QWVTFVMLVRDNPGXSLALEIER-QGSPLSLTLIP 71 (91)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEEE-TTEEEEEEECC
T ss_pred CHHHHHHHHhcCCCCeEEEEEEE-CCeEEEEEEEE
Confidence 67899988887779999999955 78888887764
No 242
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=52.61 E-value=16 Score=25.18 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCc-eEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~-~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.....+ -+.++- =.+..+...||...-
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~g~afV~--f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 12 YIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNTPETRGTAYVV--YEDIFDAKNAVDHLS 68 (115)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEECSTTTTTCEEEE--ESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCcEEEEE--ECCHHHHHHHHHHcC
Confidence 3567999999999998876 7899888888643222 143332 247888899998654
No 243
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=52.47 E-value=17 Score=26.35 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=39.4
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+.+||.++|-++|..+. -.+|.-..+.|... +|.+ |.++ .=.+..+..+||...
T Consensus 75 v~nl~~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV--~f~~~~~a~~A~~~l 132 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFV--RFHDKRDAEDAMDAM 132 (158)
T ss_dssp EESCCTTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEE--EESBHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEE--EECCHHHHHHHHHHh
Confidence 57899999999999888 57898878877553 3444 3332 234788888888754
No 244
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.28 E-value=18 Score=24.21 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|.-..+.|... +|..-..-.-.=++..+..+||+..
T Consensus 16 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 16 YVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp EEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3678999999999998886 4888877777443 2333222222346889999998765
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.13 E-value=12 Score=25.41 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=36.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC---Cce--EEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD---GTS--FDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d---g~~--~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-++|..+.+ .+| ...|.|.... |.+ |.++ .=.+..+..+||
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV--~f~~~~~a~~A~ 74 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYA--EFEDLDSLLSAL 74 (104)
T ss_dssp EEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEE--EESSHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEE--EECCHHHHHHHH
Confidence 3568999999999998887 568 7777775543 333 3333 234788999998
No 246
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.10 E-value=21 Score=23.85 Aligned_cols=53 Identities=8% Similarity=0.223 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-+||..+.+ .+|....+.|... +|.+ |.++- =.+..+..+||.
T Consensus 14 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~a~~A~~ 70 (99)
T 2dgs_A 14 FVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFIT--FEDEQSVDQAVN 70 (99)
T ss_dssp EEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEE--ESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEE--ECCHHHHHHHHH
Confidence 3568999999999998876 5898888888654 2333 44332 357888899986
No 247
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.93 E-value=8.9 Score=25.95 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=37.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|.-..+.|.... |.+ +.++. =.+..+..+||...
T Consensus 17 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~A~~A~~~l 75 (103)
T 2dnm_A 17 KVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVR--FHDRRDAQDAEAAM 75 (103)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEE--ESSSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEE--ECCHHHHHHHHHHc
Confidence 3678999999999998887 78988788775432 332 33322 23566777787754
No 248
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=51.20 E-value=26 Score=30.98 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=41.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....|.|... +|.+-.+....-++..+...||...-
T Consensus 106 fV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 4678999999999988886 4898888887653 45443222223458899999998643
No 249
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=50.87 E-value=6.7 Score=26.57 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcC-CceEEEEEc--cCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMG-SAMRISILK--LDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G-~AMkLtV~k--~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.+ .+| .-..|.|.+ .+|.+ |..+ .=+|..+..+||+...
T Consensus 5 ~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV--~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFV--EFSHLQDATRWMEANQ 65 (91)
T ss_dssp EEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEE--ECSSHHHHHHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEE--EecCHHHHHHHHHhcC
Confidence 4678999999999999886 578 444555543 33444 4443 2358899999997643
No 250
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=50.70 E-value=61 Score=22.68 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=42.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
.+.+||..+|-++|..+.. .+|.-..+.+... +|.+-....-.=.+..+-.+|++..-.
T Consensus 92 ~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 92 YVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 4677999999999998887 7898877777654 454433332234578899999887643
No 251
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=50.59 E-value=45 Score=24.73 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=42.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.. .+|.-..+.|... +|.+-....-.=.|..+-.+|+...-
T Consensus 129 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 129 YVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp EEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 4568999999999998875 6898888888665 45543333223468899999998764
No 252
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=50.54 E-value=47 Score=23.47 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=41.6
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+.+||.++|-++|..+.. .+|.-..+.+.+. +|.+-....-.=.|..+-.+|+...-.
T Consensus 94 v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 94 VTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp EESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 567999999999998886 6888777777654 454433332234588999999987654
No 253
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.27 E-value=25 Score=24.24 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.+ .+|....+.|.... |.+ |.++. =.+..+..+||..
T Consensus 31 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~--f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 31 FIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVT--FSSMAEVDAAMAA 88 (116)
T ss_dssp EEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEE--CSSHHHHHHHHTS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEE--eCCHHHHHHHHHh
Confidence 4678999999999998874 68988888886542 333 44432 3478888888876
No 254
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.19 E-value=43 Score=22.82 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.. .+|....+.|... +|.+-..-.-.=.+..+..+||...-
T Consensus 29 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLK-PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp EEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999988775 5888877777554 34442222222347888889988653
No 255
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=50.10 E-value=19 Score=24.27 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=39.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|....|.|... .|.+ |.++ .=.+..+..+||....
T Consensus 17 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 17 FIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFL--TYCERESALKAQSALH 76 (106)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEE--EECCHHHHHHHHHHhc
Confidence 3568999999999998876 5798888887553 2333 3333 2357888889988654
No 256
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=49.98 E-value=59 Score=29.17 Aligned_cols=83 Identities=8% Similarity=0.131 Sum_probs=48.6
Q ss_pred eEEEEEccC-CceEEEEeCCCCcHHHHHHHHHHH--hccc-cccccCc--cccc--cccccceeEEecCC-ccccCCcch
Q 030379 66 MRISILKLD-GTSFDVAVMNSATVKDLKLAIKKK--VNDM-EQSNLGH--RHIS--WKHVWANYCLSHQN-QKLLDENSA 136 (178)
Q Consensus 66 MkLtV~k~d-g~~~~V~V~~sATV~DLKkAI~~~--~~~~-~~r~~g~--~~IS--W~~VW~~~~L~~~g-~kLldD~~t 136 (178)
++++|...+ -..+.|.|+...|+.|.=++-++. |.+. .+..-|+ ..|. +.. =++||..+.+ .+.. ..=
T Consensus 319 VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~~~-~~~YW~l~~~p~~pl--~~G 395 (414)
T 2bb6_A 319 VLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRKAG-EREFWQVLRDPDTPL--QQG 395 (414)
T ss_dssp EEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEECC-TTEEEEEEETTTEEC--SSC
T ss_pred EEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCccC-CCceEEEEECCCCcc--ccc
Confidence 455666322 233789999999999987777765 2111 1111111 0000 001 2578887776 3332 355
Q ss_pred hhhcCCCCCCEEEEE
Q 030379 137 LQDCGVRNNSQVQFV 151 (178)
Q Consensus 137 L~dyGIkdgd~L~F~ 151 (178)
..+|.++||+.+.|.
T Consensus 396 v~~y~~~~ge~I~f~ 410 (414)
T 2bb6_A 396 IADYRPKDGETIELR 410 (414)
T ss_dssp TTTCCCCTTCEEEEE
T ss_pred ccceecCCCCEEEEE
Confidence 788999999999885
No 257
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=49.91 E-value=15 Score=23.73 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=37.5
Q ss_pred ccCCCCCC------CHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKP------TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~------t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
..+||..+ |-++|..+. -.+|.-..+.+.+.+|.+-..-.-.=++..+..+||...
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHH-HTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred EeCCCCCcHHHHHHHHHHHHHHH-hhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 46799988 567777666 468988888887666655322222234788888888754
No 258
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.42 E-value=35 Score=23.67 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-Cce--EEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~--~~V~V~~sATV~DLKkAI~ 96 (178)
+..+||.++|-++|..... .+|....|.|.+.. |.+ |.++. =.|..+..+||.
T Consensus 15 fV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~g~~rG~aFV~--F~~~e~a~~Ai~ 70 (103)
T 1s79_A 15 YIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVV--FDSIESAKKFVE 70 (103)
T ss_dssp EEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCTTSCCCEEEEE--ESSHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCCCCCccEEEEE--ECCHHHHHHHHH
Confidence 3568999999999998776 69998888887643 332 44432 247888888887
No 259
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=49.04 E-value=48 Score=23.43 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+.+ .+|....|.|... +|.+-..-.-.=.+..+..+||...
T Consensus 46 ~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 104 (139)
T 1u6f_A 46 MVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104 (139)
T ss_dssp EEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3678999999999988875 5898877777554 3444322222235888888888764
No 260
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=48.88 E-value=63 Score=23.30 Aligned_cols=75 Identities=8% Similarity=0.139 Sum_probs=51.6
Q ss_pred eEEEEEccCCceEEE-EeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCC
Q 030379 66 MRISILKLDGTSFDV-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 144 (178)
Q Consensus 66 MkLtV~k~dg~~~~V-~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkd 144 (178)
.+|++-+.....|.| .||.++-.-..=+-.++.|...++. .-+++.+|..+ +-..+--..-++-
T Consensus 13 FkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~T--------------sAiiT~dGiGI-nP~QtAGnvFlKh 77 (92)
T 1j0g_A 13 FKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAAT--------------SAIITNDGIGI-NPAQTAGNVFLKH 77 (92)
T ss_dssp EEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSS--------------EEEECTTSCCC-CCSSBHHHHHHHT
T ss_pred EEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccc--------------eEEEecCCccc-Chhhccchhhhhc
Confidence 477776667777754 5898887777666666777543331 22566777665 4556666777899
Q ss_pred CCEEEEEeeee
Q 030379 145 NSQVQFVPFVL 155 (178)
Q Consensus 145 gd~L~F~~rl~ 155 (178)
|++|..++|-+
T Consensus 78 GseLrlIPRDR 88 (92)
T 1j0g_A 78 GSELRIIPRDR 88 (92)
T ss_dssp CSEEEEEECCS
T ss_pred CceeEeccccc
Confidence 99999999864
No 261
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=48.25 E-value=40 Score=25.25 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
.|..+..+||..-..-++||.|.+.-. ...+-| | =.|=.||-+||+-.
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~---nnEL~I--P-L~~Q~DLDkAvelL 94 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYM---NNELSI--L-LKNQDDLDKAIDIL 94 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEE---CSSCEE--E-CCSHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cceEEE--e-cccHHHHHHHHHHh
Confidence 678899999999999999999999985 333333 2 24789999999863
No 262
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.22 E-value=53 Score=21.46 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.+. +.++- =.+..+-.+||...-
T Consensus 14 ~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~~----~afV~--f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFE-EYGPVIECDIVKD----YAFVH--MERAEDAVEAIRGLD 65 (92)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCCCEEEECSS----EEEEE--ESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEECC----EEEEE--ECCHHHHHHHHHHhC
Confidence 3578999999999998876 5898888888633 44432 237888888887553
No 263
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=47.95 E-value=19 Score=24.99 Aligned_cols=54 Identities=7% Similarity=0.161 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.. .+|....+.|.... |.+ |.++. =.+..+..+||..
T Consensus 29 fV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~--f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVT--FMDQAGVDKVLAQ 86 (109)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEE--ESSHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEE--ECCHHHHHHHHHH
Confidence 3678999999999998876 68998888886543 333 44432 2478888888875
No 264
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.45 E-value=39 Score=22.67 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=36.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--CceEEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-++|..+.+-- | ...+.|.... |..-.+-.-.=.+..+..+||
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 467899999999999988765 6 7677776543 444322222234788888888
No 265
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=47.17 E-value=62 Score=22.64 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=41.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|.... -.+|.-..+.+... +|.+-....-.=.+..+-.+|+...-
T Consensus 91 ~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 91 FVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp EEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 356799999999999888 46888877777643 45543333223358889999988664
No 266
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=47.12 E-value=28 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+.+||.++|-++|..+.+ .+|....+.|... .|.. |.++ .=++..+..+||...
T Consensus 68 v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFV--EFELAEDAAAAIDNM 125 (140)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEE--EESCHHHHHHHHHHS
T ss_pred EEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEE--EECCHHHHHHHHHHh
Confidence 678999999999998885 6898878877543 2333 3332 234788888888754
No 267
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=47.05 E-value=72 Score=24.12 Aligned_cols=69 Identities=12% Similarity=0.264 Sum_probs=47.3
Q ss_pred HHhhhcCCceEEEEEccCCce-E------EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCcc
Q 030379 57 LISLEMGSAMRISILKLDGTS-F------DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQK 129 (178)
Q Consensus 57 ~Iale~G~AMkLtV~k~dg~~-~------~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~k 129 (178)
.|.-.+..-+-|.|.+..++. . ..-||.+.||+++-..|.+.....+.. .+.|.|.+..
T Consensus 27 ~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~--------------alFl~~vn~~ 92 (130)
T 2zjd_A 27 LIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQ--------------AFFLLVNGHS 92 (130)
T ss_dssp HHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTC--------------CEEEEETTTE
T ss_pred HHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCc--------------eEEEEEECCc
Confidence 345566778889998877655 2 456899999999999999998765441 3344354444
Q ss_pred ccCCcchhhh
Q 030379 130 LLDENSALQD 139 (178)
Q Consensus 130 LldD~~tL~d 139 (178)
+..-+.++.+
T Consensus 93 ~p~~~~~m~~ 102 (130)
T 2zjd_A 93 MVSVSTPISE 102 (130)
T ss_dssp ECCTTSBHHH
T ss_pred cCCccchHHH
Confidence 5555556654
No 268
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=46.75 E-value=11 Score=26.08 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCC--ceEEEEEc--cCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGS--AMRISILK--LDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~--AMkLtV~k--~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||+++|-++|..+.+ .+|. ...|.+.+ ..|.+ |..+- =.+..+-.+||+..-
T Consensus 13 fV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~--f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQ--LSSAMDASQLLQILQ 74 (95)
T ss_dssp EEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEE--CSSSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEE--ECCHHHHHHHHHHhc
Confidence 4678999999999999886 6784 33455433 34554 54442 247788888888764
No 269
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=46.73 E-value=22 Score=26.42 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
+|.-++.+||..-..-.+|+.|.|.-. | ..+-|.+ .+=.||-+||+..
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n-~EllIpl---~sQeDLDkaIell 71 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT--N-NELVIPL---TTQDDLDKAVELL 71 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC--S-SSSCEEC---CSHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe--c-ceEEEec---cCHHHHHHHHHHH
Confidence 567899999999999999999999986 2 2222322 4779999999984
No 270
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=46.36 E-value=46 Score=24.56 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHH
Q 030379 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
.|.-+..+||..-..-++||.|.+.-. ... +.|| =.+=.||-+||+-
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~---nnE--L~iP-L~~Q~DLDkAvel 82 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYT---NNE--LVIP-LTTQDDLDKAVEL 82 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEE---ETT--EEEE-CCCHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cce--eEEe-cccHHHHHHHHHH
Confidence 577899999999999999999999985 223 3333 3478999999987
No 271
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.98 E-value=92 Score=28.29 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=32.7
Q ss_pred hhcCCceEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 60 LEMGSAMRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 60 le~G~AMkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
+|.=..|+|+......+ .+.|.||.++||.||-.++++.+...
T Consensus 334 lE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~ 378 (530)
T 2ylm_A 334 FENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELG 378 (530)
T ss_dssp HHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCC
T ss_pred HhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 44556799988744333 36777899999999999999887653
No 272
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.44 E-value=67 Score=23.20 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCC------ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGS------AMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~------AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-+||....+ .+|. .++|... .+|.+-..-.-.=++..|.++||..
T Consensus 27 ~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 27 RMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh
Confidence 4578999999999998887 4664 3555443 4676644333345689999999975
No 273
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.16 E-value=27 Score=23.41 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHH----HHHhhhcCCceEEEEEccCC-ceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVD----TLISLEMGSAMRISILKLDG-TSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~----~~Iale~G~AMkLtV~k~dg-~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|. .+. -.+|.-..+.|..... ..|.++- =.+..+..+||...-
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~rg~afV~--f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDYQLKAVVQ--MENLQDAIGAVNSLH 73 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCSTTCCEEEE--ESSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCCCeEEEEE--ECCHHHHHHHHHHhC
Confidence 356799999999998 444 4789888888864322 3354432 247888889988664
No 274
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=45.12 E-value=13 Score=25.81 Aligned_cols=44 Identities=9% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCc---eEEEEEccCCceEEEEeCCCCcH
Q 030379 45 VPKKPTLSDVDTLISLEMGSA---MRISILKLDGTSFDVAVMNSATV 88 (178)
Q Consensus 45 lp~~~t~~ev~~~Iale~G~A---MkLtV~k~dg~~~~V~V~~sATV 88 (178)
+|+.-|+++|...|....|=+ |+|.....++....-...++.|+
T Consensus 21 ~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL 67 (86)
T 4b6w_A 21 YGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQL 67 (86)
T ss_dssp EETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBG
T ss_pred cCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCH
Confidence 788999999999999999976 99998766665433333444554
No 275
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.06 E-value=65 Score=23.03 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=39.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
..+||.++|-+||..+.+ .+|.-..+.|.+.. -|.++-- ++..+-..||...
T Consensus 21 V~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~k--GfaFVeF--~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 21 IRKLPIDVTEGEVISLGL-PFGKVTNLLMLKGK--NQAFIEM--NTEEAANTMVNYY 72 (105)
T ss_dssp ECSCCTTSCHHHHHHHHH-HHCCEEEEEEETTT--TEEEEEE--SSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcCC--CEEEEEE--CCHHHHHHHHHHh
Confidence 578999999999987664 79999999987653 3444432 3788899999865
No 276
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=44.91 E-value=1.3e+02 Score=24.83 Aligned_cols=76 Identities=12% Similarity=-0.014 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhh-cCccccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 24 MKKARLHSTLTALL-DDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 24 ~~~~~~~~~l~~l~-~Dp~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
.-...+.+.|..++ .|| -.-+|.+|+...+.--..+.+.=...........+.+.+..|+.+++..|++.....
T Consensus 274 ~~~~~l~~ll~~~L~~dP-----~~R~s~~e~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~ 348 (396)
T 4eut_A 274 GLQVLLTPVLANILEADQ-----EKCWGFDQFFAETSDILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKII 348 (396)
T ss_dssp HHHHHHHHHHHHHSCCCT-----TTSCCHHHHHHHHHHHHTCEEEEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred HHHhhchHHHHHhhccCh-----hhhccHHHHHHHHHHHhhceEEEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCC
Confidence 33556777888888 677 345799999888776666665444444455556888899999999999999998654
Q ss_pred cc
Q 030379 103 EQ 104 (178)
Q Consensus 103 ~~ 104 (178)
++
T Consensus 349 ~~ 350 (396)
T 4eut_A 349 SS 350 (396)
T ss_dssp ST
T ss_pred hh
Confidence 44
No 277
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.56 E-value=67 Score=23.37 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+. -.+|.-..|.|.+. +-|.++- =.+..+-..||...
T Consensus 35 fVgNLp~~vte~dL~~lF-~~fG~V~~v~i~~~--kG~AFVe--F~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 35 HIRKLPIDVTEGEVISLG-LPFGKVTNLLMLKG--KNQAFIE--MNTEEAANTMVNYY 87 (119)
T ss_dssp EEESCCTTCCHHHHHHHH-TTTSCCCEEEEEGG--GTEEEEE--CSCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeCC--CCEEEEE--ECCHHHHHHHHHHh
Confidence 356899999999998765 47999999998765 3354543 34788888898754
No 278
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.56 E-value=57 Score=21.61 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=38.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.. .+|.-..+.+.+..| +.++- =.+..+..+||+..-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~kg--~afV~--f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 19 FVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKDKG--FGFIR--LETRTLAEIAKVELD 72 (99)
T ss_dssp EEESCCTTCCHHHHHHHTS-TTCCCSEEEEETTTT--EEEEE--CSSSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecCCC--EEEEE--ECCHHHHHHHHHHhC
Confidence 3568999999999988775 689888888876533 44332 246778888887653
No 279
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=44.38 E-value=19 Score=32.84 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=47.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc--CCCCCCEEEEEeeee
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC--GVRNNSQVQFVPFVL 155 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy--GIkdgd~L~F~~rl~ 155 (178)
.+.|+.+++|.+|-..|.+.+...+...- -+|..+.-. .-++|.+.+.++.+. +|.+||.|.|-+...
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l--------~lyEEi~~~-~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~ 219 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSL--------ILYEEVKPN-LTERIQDYDVSLDKALDELMDGDIIVFQKDDP 219 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCE--------EEEEEEETT-EEEECCCSSSBHHHHSTTCCTTEEEEEEECCG
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCce--------EEEEecCCC-ceeEcccccccHHHHHhcccCCCEEEEEecCC
Confidence 57889999999999999999765444210 022222210 123354367899999 999999999998765
No 280
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.72 E-value=22 Score=24.30 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCce--------EEEEEc--cCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAM--------RISILK--LDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AM--------kLtV~k--~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|... .+.|.. .+|.. |.++ .=.|..+..+||...-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 19 YVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV--SYEDPPTAKAAVEWFD 86 (113)
T ss_dssp EEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEE--EBSSHHHHHHHHHHHT
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEE--EECCHHHHHHHHHHcC
Confidence 4678999999999988775 567665 355544 33444 4443 2358889999998653
No 281
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=43.64 E-value=51 Score=21.02 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCc---e--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT---S--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~---~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.....+ . +.++ .=.+..+..+|++..-
T Consensus 8 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYV--EFENPDEAEKALKHMD 68 (88)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEE--EEecHHHHHHHHHHcC
Confidence 3568999999999998875 5888877777554321 2 3332 2347888888988653
No 282
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=43.54 E-value=37 Score=22.98 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+... +|.+ +.++ .=.+..+..+||...-
T Consensus 30 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 30 FVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALV--EYETHKQALAAKEALN 89 (110)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEE--EECCHHHHHHHHHHcC
Confidence 3667999999999998775 6788877777543 2333 3333 2348888888888653
No 283
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=43.52 E-value=43 Score=24.50 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.. .+|.-..+.+... +|.+-....-.=.+..+-.+|+...
T Consensus 118 ~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 176 (198)
T 2yh0_A 118 FIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 176 (198)
T ss_dssp EEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 3567999999999988876 5898877777655 4544322222234566777777754
No 284
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=43.20 E-value=38 Score=24.12 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcC-CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMG-SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G-~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|..+.. .+| ....+.|...+..-|.++- =++..|..+||...-
T Consensus 32 ~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~~~rGfaFV~--F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 32 TMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTRDFDGTGALE--FPSEEILVEALERLN 88 (111)
T ss_dssp EEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSCSSSCCEEEE--ESSHHHHHHHHHHTT
T ss_pred EEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcCCCCCEEEEE--ECCHHHHHHHHHHcC
Confidence 3567999999999988775 678 6666666432323344432 247899999998653
No 285
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.02 E-value=39 Score=23.71 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCC-----ceEEEEEccCCceEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGS-----AMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~-----AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-+||..... .+|. .++|...+ +|.+-..-.-.=++..+.++||+
T Consensus 21 ~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 21 KLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh
Confidence 4678999999999988875 3665 34444433 46654333333458899999998
No 286
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=43.01 E-value=26 Score=26.80 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.+ .+|.-..|.|.... |.+ |.++. -.+..+..+||...-
T Consensus 92 ~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~g~~kG~afV~--F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 92 LVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVH--FERRADALKAMKQYK 150 (177)
T ss_dssp EEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCTTSSCSCCEEEE--ESCHHHHHHHHHHST
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCEeeEEEEE--eCCHHHHHHHHHHhC
Confidence 4678999999999998887 58988788875432 332 33332 247888889988553
No 287
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=43.00 E-value=73 Score=22.54 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCC----ceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDG----TSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg----~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.. .+|.-..+.|.+... .+-..-.-.=++..+-..|++...
T Consensus 8 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 568999999999998875 689887777765432 232222223458889999988654
No 288
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=42.98 E-value=23 Score=25.65 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=43.3
Q ss_pred eEEEEEccCCce--E--EEEe-CCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhc
Q 030379 66 MRISILKLDGTS--F--DVAV-MNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 140 (178)
Q Consensus 66 MkLtV~k~dg~~--~--~V~V-~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dy 140 (178)
|+|+- +..|.. | +|.+ +..+||.|+=.+|.+.+...-. --.||.. ..-++++++-. ++
T Consensus 12 IrVYt-k~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fk---------yA~VwG~-saK~~~qrVgl------dh 74 (93)
T 2eki_A 12 VRIYT-KPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFK---------YALVWGL-SVKHNPQKVGK------DH 74 (93)
T ss_dssp EEEEE-CCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEE---------EEEEBST-TSSSSSEEECS------SC
T ss_pred EEEEe-CCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhcc---------EEEEecc-cccCCCEECCC------Cc
Confidence 55555 344442 2 6889 9999999999999887642100 0114432 12245665532 45
Q ss_pred CCCCCCEEEEEee
Q 030379 141 GVRNNSQVQFVPF 153 (178)
Q Consensus 141 GIkdgd~L~F~~r 153 (178)
-+.|||.|.++.+
T Consensus 75 ~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 75 TLEDEDVIQIVKK 87 (93)
T ss_dssp CCCSSEEECEEEC
T ss_pred EecCCCEEEEEeC
Confidence 6889998888765
No 289
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=42.72 E-value=33 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcC--CceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMG--SAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G--~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.. .+| ....|.|.+. .|.+ |.++. =.+..+.++||+..
T Consensus 72 fVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~--f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 72 YIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVG--VGSEASSKKLMDLL 132 (229)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEE--ESCTTHHHHHHTTS
T ss_pred EEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEE--ECCHHHHHHHHHHc
Confidence 5678999999999998884 789 7777777554 5555 44432 23667788888754
No 290
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=42.54 E-value=52 Score=25.58 Aligned_cols=68 Identities=7% Similarity=0.033 Sum_probs=37.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhcccccc--ccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEeeeec
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQS--NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVLS 156 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~r--~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~rl~~ 156 (178)
.++|+. +||.||...+...++..... ..+ -+...+.+.-+|+ ...... -.++-+++||+|.|.+-+..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~-------~l~~~v~VaVNg~-~v~~~~-~~dt~L~dGDeVai~PpVsG 86 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGE-------GLAERVSVFLEGR-DVRYLQ-GLSTPLSPGATLDLFPPVAG 86 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETT-------EECTTCEEEETTE-EGGGTT-GGGCBCCTTCEEEEECSCCS
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhccc-------ccCCcEEEEECCE-ECCCcC-CCccCCCCCCEEEEECcccc
Confidence 345665 89999999998776432110 000 0111222333343 332211 12456999999999988753
No 291
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.33 E-value=25 Score=24.07 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=35.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCc----eEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSA----MRISILKLDGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~A----MkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|.- +.+.+. .|.+ |.++. =.+..+...||...
T Consensus 29 ~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~--~g~~~g~afV~--f~~~~~a~~Ai~~l 87 (115)
T 2cpx_A 29 YLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMM--TGRMRGQAFIT--FPNKEIAWQALHLV 87 (115)
T ss_dssp EEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEE--CSSSCSEEEEE--CSSHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcC--CCccceEEEEE--ECCHHHHHHHHHHh
Confidence 4678999999999987665 46664 455544 4443 44432 35888888888754
No 292
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=42.20 E-value=22 Score=24.57 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+.. .+|.-..+.+... +|.+ |.++. =.+..+..+||...
T Consensus 44 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~--f~~~~~A~~A~~~l 102 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVS--FDNPDSAQVAIKAM 102 (118)
T ss_dssp EEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEE--EESSHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEE--ECCHHHHHHHHHHc
Confidence 3678999999999998886 6898777777543 2332 33322 23677888888754
No 293
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=41.97 E-value=10 Score=29.56 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.7
Q ss_pred CCceEEEEEccCCceEEEEeCCCC---cHHHHHHHH
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSA---TVKDLKLAI 95 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sA---TV~DLKkAI 95 (178)
++.|+|.+. .++..+.+++.+++ |+.+|.+++
T Consensus 27 ~~~~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 27 GVEMRLRIR-FESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp SSCCCEEEE-ETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred cCCeEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 677888774 46788999999999 999887754
No 294
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=41.93 E-value=35 Score=24.22 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||+++|-++|..+.. .+|.-..+.+.+. +|.+ +.++ .=.+..+-+.|+...-
T Consensus 7 ~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 7 IVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFV--DFTSEMDSQRAIKVLN 66 (168)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEE--EECCHHHHHHHHHhcC
Confidence 3568999999999998875 5888777776543 4444 3332 2348899999997543
No 295
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.68 E-value=63 Score=22.43 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+.. .+|.-..+.+.+. .-|.++-- ++..+-..||...
T Consensus 19 ~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~--kg~aFVef--~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 19 HIRKLPGEVTETEVIALGL-PFGKVTNILMLKG--KNQAFLEL--ATEEAAITMVNYY 71 (101)
T ss_dssp EEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT--TTEEEEEE--SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC--CCEEEEEE--CCHHHHHHHHHHh
Confidence 3568999999999986654 7999988888764 33444322 3788888888754
No 296
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=41.40 E-value=76 Score=21.10 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+... .|.+-..-.-.=++..+..+||...-
T Consensus 27 ~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 27 FVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 3678999999999988775 5798877777543 24443332223458888899988653
No 297
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=41.37 E-value=51 Score=24.30 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=37.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCC-----ceEEEEEccCCceEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGS-----AMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~-----AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-+||..... .+|. .++|...+ +|.+-..-.-.=+|..+..+||.
T Consensus 48 fVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~-~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 48 KLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTR-EGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp EEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECS-SSCEEEEEEEECSSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHh
Confidence 4688999999999988776 4776 34554433 36663333233458999999998
No 298
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=41.02 E-value=44 Score=24.83 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.+. +|.. +.++ .=++..+-.+|++..-
T Consensus 32 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~A~~~l~ 91 (216)
T 2qfj_A 32 YVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFV--EYEVPEAAQLALEQMN 91 (216)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEE--EESSHHHHHHHHHHHS
T ss_pred EEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEE--EeCCHHHHHHHHHHcc
Confidence 4667999999999998875 6798777777543 2333 3332 2358889999998653
No 299
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.02 E-value=83 Score=21.86 Aligned_cols=53 Identities=6% Similarity=0.095 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+.+ .+|.-..|.+.+. +-|.++- =.+..+-.+||...
T Consensus 19 ~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~--kg~aFVe--f~~~~~A~~Ai~~l 71 (104)
T 1wex_A 19 HVRGLCESVVEADLVEALE-KFGTICYVMMMPF--KRQALVE--FENIDSAKECVTFA 71 (104)
T ss_dssp EEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT--TTEEEEE--ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC--CCEEEEE--ECCHHHHHHHHHHh
Confidence 3467999999999987665 7999888888664 3344432 24788888998764
No 300
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.93 E-value=67 Score=21.22 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=36.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|..+.+ .+|.-- +.+......-|.++.= .+..+..+||...-
T Consensus 23 ~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~~~~g~afV~f--~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 23 YVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQGPRRRAFLHY--PDSAAAQQAVSCLQ 77 (97)
T ss_dssp EEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEETTTTEEEEEC--SSHHHHHHHHHHHT
T ss_pred EEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcCCCCcEEEEEE--CCHHHHHHHHHHhC
Confidence 4567999999999998876 677652 3443333333554432 47888888887653
No 301
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=40.70 E-value=63 Score=23.43 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=35.8
Q ss_pred HhhhcCCceEEEEEccCCceE------EEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 58 ISLEMGSAMRISILKLDGTSF------DVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 58 Iale~G~AMkLtV~k~dg~~~------~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
|.-.+...+-|.|.+..++.+ ...|+.+.||+++-..|.+.....+.
T Consensus 20 ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~ 72 (110)
T 2r2q_A 20 IRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPE 72 (110)
T ss_dssp HHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTT
T ss_pred HHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 344567788888888876543 34789999999999999999865544
No 302
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=40.52 E-value=64 Score=23.48 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=14.0
Q ss_pred CcHHHHHHHHHHHhcc
Q 030379 86 ATVKDLKLAIKKKVND 101 (178)
Q Consensus 86 ATV~DLKkAI~~~~~~ 101 (178)
.|..+|+..|++.|+.
T Consensus 42 ~s~~~L~~~V~~lFp~ 57 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA 57 (102)
T ss_dssp CHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHccc
Confidence 3899999999999864
No 303
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=40.04 E-value=84 Score=23.86 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=41.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEc--cCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k--~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|..+.. .+|.-..|.|.+ ..|.+...-.-.=.+..+..+||...-
T Consensus 19 fVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~ 78 (213)
T 4f02_A 19 YVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 78 (213)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh
Confidence 4568999999999988775 689877777764 345553333233458899999998753
No 304
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=40.00 E-value=15 Score=26.83 Aligned_cols=48 Identities=27% Similarity=0.243 Sum_probs=34.6
Q ss_pred ccccC----CCCCCCHHHHH----HHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHH
Q 030379 40 PILAD----VPKKPTLSDVD----TLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94 (178)
Q Consensus 40 p~L~d----lp~~~t~~ev~----~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkA 94 (178)
|.|.- +|.+.|+.++. ..|.|..++|+-|.| ++. .++.++|+++|=+.
T Consensus 41 p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~v---n~~----~p~~~~~m~~LY~~ 96 (110)
T 2r2q_A 41 PDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV---NNT----IPPTSATMGQLYED 96 (110)
T ss_dssp CCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEB---TTB----CCCTTSBHHHHHHH
T ss_pred CccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEE---CCE----ecCccChHHHHHHH
Confidence 55553 78889999985 566788889998877 443 34667899887443
No 305
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=39.33 E-value=78 Score=24.32 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|.++|....+ .+|....|.+.+. +|.+-....-.=.|..+..+||...
T Consensus 113 ~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 113 YIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp EEECCCTTCCHHHHHHHHT-TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred EecCCCCcCCHHHHHHHHh-cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 3567999999999998887 7899888887653 2333222222335788888898643
No 306
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=39.20 E-value=90 Score=23.63 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=55.8
Q ss_pred hcCCceEEEEEccCC----ceEEEEeCCCCcHHHHHHHHHHH-hccccccccCccccccccccceeEEecCCcccc-CCc
Q 030379 61 EMGSAMRISILKLDG----TSFDVAVMNSATVKDLKLAIKKK-VNDMEQSNLGHRHISWKHVWANYCLSHQNQKLL-DEN 134 (178)
Q Consensus 61 e~G~AMkLtV~k~dg----~~~~V~V~~sATV~DLKkAI~~~-~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLl-dD~ 134 (178)
.+|.++-|.|-=.+- +.+.+.|+++.|..+|=..+-.. +...|+ -.+|.|.-| -|+ -+|+... |.+
T Consensus 19 nF~g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPD----fa~idws~v---~W~-l~g~pftPD~~ 90 (119)
T 3u52_E 19 NFHGMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPD----SAKADFLNA---EWL-LNDEPFTPKAD 90 (119)
T ss_dssp GGTTCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTT----GGGCCTTSS---EEE-ETTEEECCCTT
T ss_pred hCCCCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCc----cccCCcchh---eEE-ECCccCCCChh
Confidence 466777777743332 34688899999999997755444 333333 246777432 133 3465554 578
Q ss_pred chhhhcCCCCCCEEEEE
Q 030379 135 SALQDCGVRNNSQVQFV 151 (178)
Q Consensus 135 ~tL~dyGIkdgd~L~F~ 151 (178)
++|.+.||.-.+.|+|.
T Consensus 91 kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 91 ASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SBTTTTTCCTTEEEEEE
T ss_pred hhHHHcCCCchheEEEe
Confidence 99999999999999886
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.11 E-value=70 Score=20.89 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=38.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEE-EEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRI-SILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkL-tV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|..+.+ .+|.-..+ .|.........++ .-.+..+..+||...-
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~~afV--~f~~~~~a~~Ai~~l~ 75 (96)
T 2e44_A 19 QIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETAVVNV--TYSSKDQARQALDKLN 75 (96)
T ss_dssp EEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSEEEEE--EESSHHHHHHHHHHHT
T ss_pred EEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCCEEEE--EECCHHHHHHHHHHhC
Confidence 3567999999999998887 78988777 3544433322222 2247888888888653
No 308
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=39.05 E-value=17 Score=22.89 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=36.8
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
+.+||.++|-++|..... .+|.-..+.+.... |.+ +.++. =.+..+..+|++.
T Consensus 4 v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~--f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFIT--FKEEEPVKKIMEK 60 (75)
T ss_dssp ESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEE--CSSSHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEE--ECCHHHHHHHHHh
Confidence 578999999999998876 58888777775432 332 33332 2467788888874
No 309
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=39.05 E-value=81 Score=21.05 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=37.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.+. +.++- =.+..+..+||...
T Consensus 15 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~----~afV~--f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 15 FVRNLANTVTEEILEKAFS-QFGKLERVKKLKD----YAFIH--FDERDGAVKAMEEM 65 (103)
T ss_dssp EEECCCTTCCHHHHHHHHH-HHSCEEEEEECSS----CEEEE--ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC----EEEEE--eCCHHHHHHHHHHH
Confidence 4567999999999998776 5898888777532 33322 24788888888764
No 310
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.97 E-value=44 Score=21.34 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|-++|..+.+ .+|.-..+.+.+..| +.++- =.+..+-.+|+...
T Consensus 16 ~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~kg--~afV~--f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 16 YVGGLGDTITETDLRNHFY-QFGEIRTITVVQRQQ--CAFIQ--FATRQAAEVAAEKS 68 (85)
T ss_dssp EEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGGGT--EEEEE--ESSHHHHHHHHHTT
T ss_pred EEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECCCC--EEEEE--ECCHHHHHHHHHHh
Confidence 3568999999999998876 689988888876433 33322 24788888888755
No 311
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=38.88 E-value=12 Score=25.21 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhhcCccccCCCCCCCHHHHHHHHh
Q 030379 23 TMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLIS 59 (178)
Q Consensus 23 ~~~~~~~~~~l~~l~~Dp~L~dlp~~~t~~ev~~~Ia 59 (178)
+.+.+.++..|..+..+..|+.+....+++++...|.
T Consensus 51 ~~r~~~le~~l~~l~~~~~l~~~~~~~s~~~i~~~l~ 87 (89)
T 3coq_A 51 ESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLT 87 (89)
T ss_dssp HHHHHHHHHHHHHHCSSSCHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCchhhHHhhcCCCHHHHHHHHh
Confidence 5677888899999988888888777888998887764
No 312
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=38.61 E-value=53 Score=22.83 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||..+.. .+|.-..+.|.... |.+ |.++ .=.+..+..+||...-
T Consensus 39 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~g~~~g~afV--~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 39 LVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADV--HFERRADALKAMKQYK 97 (124)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCSSSSCCSEEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCEeeEEEE--EECCHHHHHHHHHHcC
Confidence 3678999999999988776 58888777776532 333 3332 2358889999988654
No 313
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=38.52 E-value=25 Score=26.29 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCCCHHH----HHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHH
Q 030379 45 VPKKPTLSD----VDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDL 91 (178)
Q Consensus 45 lp~~~t~~e----v~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DL 91 (178)
+|.+.|+.+ |+..|.|..++|+=|.| +++ ++ +.++|+++|
T Consensus 54 Vp~~~tv~qf~~~iRkrl~l~~~~alFl~V---n~~-~p---~~~~~m~~l 97 (119)
T 3h9d_A 54 VPSDLTVGQFVSVLRKRVQLEAESALFVYT---NDT-VL---PSSAQMADI 97 (119)
T ss_dssp EETTCBHHHHHHHHHHHHTCCTTSCCEEEE---TTE-EC---CTTSBHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEEE---CCc-CC---CccchHHHH
No 314
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=38.31 E-value=27 Score=24.97 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhcCccccC----CCCCCCHHHHHH
Q 030379 26 KARLHSTLTALLDDPILAD----VPKKPTLSDVDT 56 (178)
Q Consensus 26 ~~~~~~~l~~l~~Dp~L~d----lp~~~t~~ev~~ 56 (178)
...+++.+..+++||.... =|.++|-+.|+.
T Consensus 18 ~~~~~~~~~~vl~dP~V~~Fl~~h~~~l~~~~I~~ 52 (106)
T 2k7r_A 18 QKRLEQMKEKVMKDQDVQAFLKENEEVIDQKMIEK 52 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHChhhCCHHHHHh
Confidence 4555889999999994433 455677666654
No 315
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.99 E-value=52 Score=23.90 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=50.9
Q ss_pred CceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEec--CCccccCCcch----h
Q 030379 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH--QNQKLLDENSA----L 137 (178)
Q Consensus 64 ~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~--~g~kLldD~~t----L 137 (178)
+..-|.|-..||++..|.|+...|+.|+=+.+..+...... .+|- -|=-.. ..+....|... |
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~-------~~Wa----LvE~~P~L~~ER~~EDHE~vvevl 76 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD-------ETWG----LVECHPHLALERGLEDHESVVEVQ 76 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC-------CCCC----EEEEETTTTEEEEECSSSCHHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC-------CCeE----EEEecCCCCcEEeccCchhHHHHH
Confidence 34678888899999999999999999999988888642211 1231 000001 12223344433 4
Q ss_pred hhcCCCCCCEEEEEeee
Q 030379 138 QDCGVRNNSQVQFVPFV 154 (178)
Q Consensus 138 ~dyGIkdgd~L~F~~rl 154 (178)
...++.....+.|.+|.
T Consensus 77 ~~W~~~s~nr~~F~kr~ 93 (100)
T 1wgr_A 77 AAWPVGGDSRFVFRKNF 93 (100)
T ss_dssp TTSCSSSCCEEEECSCC
T ss_pred hhCccCCCcEEEEecch
Confidence 45667667778887775
No 316
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=37.83 E-value=60 Score=25.50 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHH---HHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDT---LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~---~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-++|.. .+--.+|.-..|.|.+ +|..-..-.-.=.+..+-.+||...-
T Consensus 13 ~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~ 73 (282)
T 3pgw_A 13 YINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQ 73 (282)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3568999999999874 3445788888888865 55542222223458888899987653
No 317
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=37.75 E-value=62 Score=21.88 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=27.0
Q ss_pred CHHHHHHHHhhh-cCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLE-MGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale-~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++..+|+-. .|+.++|+|.+ +|+.+.+.|..
T Consensus 38 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v~~ 72 (94)
T 2kl1_A 38 TSEQIVSYVREKQAGDRVRVTFIR-DRKQHEAELVL 72 (94)
T ss_dssp CHHHHHHHHHHSCTTCCEEEEEEE-TTEEEEEEECC
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEEEE
Confidence 578888888765 69999999955 78888877754
No 318
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=37.69 E-value=27 Score=24.87 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-++|..+.. .+|.-..+.+.+. +|.+ +..+- =++..+...|+..
T Consensus 7 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~--f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 7 FIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLS--FEKPSSVDEVVKT 64 (167)
T ss_dssp EECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEE--ESSTHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEE--EccHHHHHHHHhc
Confidence 3578999999999998876 6898878877554 2333 33332 2467778888885
No 319
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=37.44 E-value=19 Score=26.70 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=35.4
Q ss_pred ccccC----CCCCCCHHHHH----HHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHH
Q 030379 40 PILAD----VPKKPTLSDVD----TLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 40 p~L~d----lp~~~t~~ev~----~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI 95 (178)
|.|.- +|.+.|+.++. ..|.|..++|+-|.| ++. ..+.++|+++|=+..
T Consensus 42 p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v---n~~----~p~~~~~m~~LY~~~ 98 (117)
T 1eo6_A 42 VDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV---DKT----VPQSSLTMGQLYEKE 98 (117)
T ss_dssp CCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB---TTB----CCCTTSBHHHHHHHH
T ss_pred CcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE---CCE----ecCccchHHHHHHHh
Confidence 56654 78889999985 667788899998877 443 345678998875443
No 320
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.28 E-value=83 Score=20.36 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=37.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.+ .+|.-..+.+.+ | +.++- =.+..+..+||...-
T Consensus 13 V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~--g--~afV~--f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFE-QYGKVLECDIIK--N--YGFVH--IEDKTAAEDAIRNLH 63 (90)
T ss_dssp EESCCSSCCHHHHHHHHH-TSSCEEEEEEET--T--EEEEE--ESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEC--C--EEEEE--ECCHHHHHHHHHHhc
Confidence 568999999999988776 689888888862 2 33321 237888888887553
No 321
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=36.97 E-value=27 Score=29.12 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.5
Q ss_pred ceEEEEEccCCceEEEEeCC--CCcHHHHH
Q 030379 65 AMRISILKLDGTSFDVAVMN--SATVKDLK 92 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~--sATV~DLK 92 (178)
-++|.|-..||+...|.|.. ++|+.||-
T Consensus 5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el~ 34 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQIM 34 (322)
T ss_dssp CCEEEEECTTSCEEEEECTTGGGCCHHHHH
T ss_pred ceEEEEEEECCcEEEEEEcCCCCCcHHHHH
Confidence 37899999999999999998 89999993
No 322
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=36.66 E-value=88 Score=24.64 Aligned_cols=56 Identities=9% Similarity=0.126 Sum_probs=40.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
+.+||..+|-++|....+ .+|.-..+.|... +|.+-..-.-.=++..+-.+||...
T Consensus 101 v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFS-QFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 458999999999998885 7898877777544 4444333323345888999999876
No 323
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.44 E-value=36 Score=22.25 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.. .+|.-..+.+.... |.+ +.++- =.+..+..+||+..
T Consensus 20 ~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~--f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 20 YVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFIL--FLDKDSAQNCTRAI 78 (94)
T ss_dssp EEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEE--ESCHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEE--ECCHHHHHHHHHHc
Confidence 4678999999999988775 58888788875532 222 33322 24788888888754
No 324
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=36.07 E-value=0.6 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.0
Q ss_pred CcchhhhcCCCCCCEEEEEeeeecCCc
Q 030379 133 ENSALQDCGVRNNSQVQFVPFVLSKGS 159 (178)
Q Consensus 133 D~~tL~dyGIkdgd~L~F~~rl~~~~~ 159 (178)
+...|++.||+.||.|...+++..+..
T Consensus 40 ~~~~Lr~LGi~eGDIIrVmk~l~~k~~ 66 (72)
T 3idw_A 40 NNSMLRTLGLREGDIVRVMKHLDKKFG 66 (72)
T ss_dssp CHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHcCCchhhHHHHHHHHHHHhC
Confidence 678999999999999988888877643
No 325
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.53 E-value=35 Score=23.96 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=37.0
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCce--EEEEEccCCceEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAM--RISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AM--kLtV~k~dg~~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-++|..+.. .+|... .+.....+|.+-..-.-.-++..+.++||.
T Consensus 29 ~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 29 YLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4678999999999998775 577643 333444566653333223357788899998
No 326
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.03 E-value=39 Score=23.35 Aligned_cols=54 Identities=6% Similarity=0.087 Sum_probs=37.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC-----Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-----GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d-----g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||.++|-++|..+.+ .+|.-. +.+.... |.+ |.++ .=++..+..+||+..
T Consensus 12 fVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV--~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 12 FVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFL--LFQEESSVQALIDAC 72 (114)
T ss_dssp EEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEE--CCSSHHHHHHHHHHS
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEE--EECCHHHHHHHHHhh
Confidence 3568999999999998776 678766 5553332 232 4443 345788999999865
No 327
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=35.00 E-value=22 Score=24.16 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=40.0
Q ss_pred cccCCCC------CCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPK------KPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~------~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||. ++|-++|..+.+ .+|.-..+.|.... |.+ |.++ .=++..+..+||+..-
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV--~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFV--ECGSMNDAKKIIKSFH 75 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEE--EESSHHHHHHHHHHHT
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEE--EECCHHHHHHHHHHhC
Confidence 3567999 889999988876 78988877775443 444 4433 2358889999998653
No 328
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.66 E-value=30 Score=23.57 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=36.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceE-EEEEc-cCCce--EEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMR-ISILK-LDGTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMk-LtV~k-~dg~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-+||..... .+|.... |.|.. .+|.+ |.++. =++..+..+||..
T Consensus 19 ~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~~~g~~~G~afV~--F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVDFQGRSTGEAFVQ--FASQEIAEKALKK 76 (104)
T ss_dssp EEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBCSSSCBCSEEEEE--ESSHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEECCCCCcceEEEEE--ECCHHHHHHHHHh
Confidence 4678999999999987765 5676544 44432 24444 44332 3588999999987
No 329
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=34.07 E-value=69 Score=23.17 Aligned_cols=34 Identities=12% Similarity=0.342 Sum_probs=26.4
Q ss_pred CHHHHHHHHhhh-cCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLE-MGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale-~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++...|+-. .|+.++|+|.+ +|+.+.+.|..
T Consensus 90 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v~~ 124 (134)
T 2l97_A 90 SSTDLQSALYNHSIGDTIKITYYR-NGKEETTSIKL 124 (134)
T ss_dssp CHHHHHHHHHHSSTTCEEEEEEEE-TTEEEEEEEEC
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEEEE
Confidence 677888888765 69999999954 78888777644
No 330
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=33.74 E-value=32 Score=24.46 Aligned_cols=52 Identities=10% Similarity=0.233 Sum_probs=36.4
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~ 96 (178)
+.+||.++|-++|..+.. .+|.-..+.|... +|.+ +.++ .=.+..+..+|++
T Consensus 92 V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV--~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 92 VGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFV--TYDSADAVDRVCQ 147 (167)
T ss_dssp EEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEE--EESSHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEE--EECCHHHHHHHHh
Confidence 567999999999998877 6888878777554 2333 3332 2247778888886
No 331
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.21 E-value=46 Score=22.15 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=34.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEc-cCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILK-LDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k-~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|. |.+.. .+|.. |.++ .=.+..+.++||...-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~g~---v~~~~~~~g~~~g~afV--~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 19 VLSNLSYSATEETLQEVFE-KATF---IKVPQNQNGKSKGYAFI--EFASFEDAKEALNSCN 74 (101)
T ss_dssp EEESCCTTCCHHHHHHHCS-SCSE---EECCBCSSSCBCSEEEE--ECSSHHHHHHHHHHTS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCE---EEEEECCCCCEeeEEEE--EECCHHHHHHHHHHhC
Confidence 3578999999999988876 3553 33332 23443 3333 3358889999988553
No 332
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=32.20 E-value=75 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCceEEEEeCCCCcHHHHH
Q 030379 63 GSAMRISILKLDGTSFDVAVMNSATVKDLK 92 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~~V~V~~sATV~DLK 92 (178)
|...+|++...+|....|.++...|+.|.=
T Consensus 1 ~~~~~v~~~~~~g~~~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 1 GTGIKVFFVTPEGREIMIEGNEGDSILDLA 30 (103)
T ss_dssp CCCEEEEEECTTCCEEEEEECTTCBHHHHH
T ss_pred CCceEEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 566789987578977788889999998753
No 333
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=32.07 E-value=40 Score=22.17 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=35.8
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+..- +|.. .+...+|.+-..-.-.=.+..+..+||...-
T Consensus 20 ~V~nL~~~~t~~~l~~~F~~-~g~v---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 20 LAKNLSFNITEDELKEVFED-ALEI---RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp EEESCCSSCCHHHHHHHHCS-EEEE---CCEEETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHhh-CCcE---EEeCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 36689999999999887653 4532 2224556553333333458889999988653
No 334
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=32.01 E-value=25 Score=25.70 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEeCCCCcHH---HHHHHHHHHhccccccccCccccccccccce
Q 030379 78 FDVAVMNSATVK---DLKLAIKKKVNDMEQSNLGHRHISWKHVWAN 120 (178)
Q Consensus 78 ~~V~V~~sATV~---DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~ 120 (178)
++|.+|.+.+-. ++|..=+...... ++ .|+ |+|+|+-
T Consensus 7 m~V~~P~~~~~~~~~~~~a~Eka~a~eL-q~-~G~----~~~lWRv 46 (96)
T 1mli_A 7 MTVKLPVDMDPAKATQLKADEKELAQRL-QR-EGT----WRHLWRI 46 (96)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHH-Hh-CCe----eEEEEEe
Confidence 567778775544 4444433333222 22 353 8999983
No 335
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.98 E-value=34 Score=23.45 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=36.5
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-++|..+.. .+|....|.|.... |.. |.++. =.+..+..+||
T Consensus 29 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~--f~~~~~a~~A~ 84 (114)
T 2cq4_A 29 FCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVE--FCEIQSVPLAI 84 (114)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEE--ESCGGGHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEE--eCcHHHHHHHH
Confidence 4678999999999998874 68988888886433 322 43332 23667778888
No 336
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.90 E-value=75 Score=22.28 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=39.5
Q ss_pred ccCCCC-CCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPK-KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~-~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||. ++|-+||..+. -.+|.-..+.|.+..| |.++-- ++..+-..||...-
T Consensus 20 V~nLp~~~~te~dL~~lF-~~fG~V~~v~i~~~kg--~aFVef--~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLV-EPFGVISNHLILNKIN--EAFIEM--ATTEDAQAAVDYYT 73 (102)
T ss_dssp EESCCCSSSHHHHHHTTT-GGGSCEEEEEECSSSS--CEEEEE--SSHHHHHHHHHHHH
T ss_pred EeCCCCCcCCHHHHHHHH-HhcCCEEEEEEEcCCC--EEEEEE--CCHHHHHHHHHHHc
Confidence 578999 99999988755 5899999999876544 444322 37788888888653
No 337
>1qbe_A Bacteriophage Q beta capsid; coat protein, RNA binding, icosahedral virus; 3.50A {Enterobacteria phage qbeta} SCOP: d.85.1.1
Probab=31.71 E-value=13 Score=28.15 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=21.7
Q ss_pred ccccchhHHHHHHHHHHHhhhcCccccC
Q 030379 17 GDYNSSTMKKARLHSTLTALLDDPILAD 44 (178)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~l~~Dp~L~d 44 (178)
-.|+-.| -++.++-+|++||.||+|-|
T Consensus 97 t~yst~e-eralvrtelaalladpl~~d 123 (132)
T 1qbe_A 97 TQYSTDE-ERAFVRTELAALLASPLLID 123 (132)
T ss_dssp CTTCCHH-HHHHHHHHHHHHHHSHHHHH
T ss_pred EecccHH-HHHHHHHHHHHHhcChHHhh
Confidence 3565544 48999999999999998865
No 338
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.65 E-value=47 Score=22.83 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=40.2
Q ss_pred cccCCCCCCCHHHHH--HHHhhhcCCceEEEEEccCCc-------eEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVD--TLISLEMGSAMRISILKLDGT-------SFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~--~~Iale~G~AMkLtV~k~dg~-------~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+..+||.++|-+||. ..+=-.+|.-..+.|.+..+. -|.++. =++..+..+||+..-
T Consensus 19 ~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~--f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 19 FVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVT--YIRSEDALRAIQCVN 84 (111)
T ss_dssp EEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEE--ESSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEE--ECcHHHHHHHHHHhC
Confidence 356799999999998 244457899888888765441 144432 247889999998653
No 339
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=31.22 E-value=31 Score=23.56 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=37.1
Q ss_pred cccCCCCCC------CHHHHHHHHhhhcCCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKP------TLSDVDTLISLEMGSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~------t~~ev~~~Iale~G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+..+||..+ |-++|..+.+ .+|.-..+.|.+.+|.+ |.++. =++..+..+||...
T Consensus 19 ~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~~~~g~~~G~afV~--f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 19 VVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGYIFLE--YASPAHAVDAVKNA 81 (105)
T ss_dssp EEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECCCBTTBSCCEEEEE--ECSSSHHHHHHHHC
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEeeCCCCCeeeEEEEE--ECCHHHHHHHHHHh
Confidence 356799988 6677776664 68998888887666654 44332 23566777888754
No 340
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=30.93 E-value=59 Score=25.66 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=37.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCc--eEEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT--SFDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-++|..+.. .+|.-..+.|.+..+. -+.++ .=++..+-.+|+.
T Consensus 45 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~afV--~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 45 LVKNLPKSYNQNKVYKYFK-HCGPIIHVDVADSLKKNFRFARI--EFARYDGALAAIT 99 (292)
T ss_dssp EEEEECTTCCHHHHHHHHG-GGSCEEEEEEEECTTSSSEEEEE--EESSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcEEEEE--EECCHHHHHHHHH
Confidence 4667999999999998776 5898888888663322 23332 2347888888884
No 341
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=30.73 E-value=1.3e+02 Score=20.58 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=37.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-+||..+.+ .+|.-..+.+. .| |.++. =.+..+..+|+...-
T Consensus 36 V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--kg--~afV~--f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 36 VRPFPLDVQESELNEIFG-PFGPMKEVKIL--NG--FAFVE--FEEAESAAKAIEEVH 86 (108)
T ss_dssp ECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--TT--EEEEE--CSSHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH-hcCCEEEEEEE--CC--EEEEE--ECCHHHHHHHHHHcC
Confidence 577999999999998875 68988888886 22 44432 247888888887653
No 342
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=30.16 E-value=33 Score=24.34 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceE--EEEE--ccCCce--EEEEeCCCCcHHHHHHHHHHHhc
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMR--ISIL--KLDGTS--FDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMk--LtV~--k~dg~~--~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
++.+||.++|-++|..+.. .+|.-.. |.|. +..|.+ |.++- =.+. +-.+||...-.
T Consensus 27 fV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~--f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 27 ILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQ--LSTI-EAAQLLQILQA 88 (131)
T ss_dssp EECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEE--CCHH-HHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEE--ECCH-HHHHHHHHhcC
Confidence 4567999999999998876 7888733 4443 334544 45443 2467 88888887654
No 343
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.15 E-value=55 Score=22.41 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.4
Q ss_pred ccccCCCCCCCHHHHHHHHhhhcCCc---eEEEEEc
Q 030379 40 PILADVPKKPTLSDVDTLISLEMGSA---MRISILK 72 (178)
Q Consensus 40 p~L~dlp~~~t~~ev~~~Iale~G~A---MkLtV~k 72 (178)
.+-..+|...|+.++...|+...|-+ |+|....
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 33446899999999999999999954 8998864
No 344
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.63 E-value=1.2e+02 Score=19.90 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=35.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhc--CCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEM--GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~--G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+ |....+.+.+ | |.++- =.+..+..+||...-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~~--g--~afV~--f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 19 YVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKIR--D--YAFVH--FSNREDAVEAMKALN 72 (99)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSTTCEEEEEECS--S--EEEEE--ESSHHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEeC--C--eEEEE--eCCHHHHHHHHHHhC
Confidence 4668999999999988776 46 6666666532 2 43332 247888888887553
No 345
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=29.62 E-value=1.8e+02 Score=21.81 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCceEEEEEccCCceE------EEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 53 DVDTLISLEMGSAMRISILKLDGTSF------DVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 53 ev~~~Iale~G~AMkLtV~k~dg~~~------~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
|+..+++ .+-.-+=|.|.+.+++.+ ..-||.+.||+++...|.+.....++
T Consensus 25 e~~~ir~-kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~ 81 (125)
T 3m95_A 25 EGEKIRR-KYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 81 (125)
T ss_dssp HHHHHHH-HCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHH-HCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCcc
Confidence 4443333 466777888888776553 34689999999999999999876554
No 346
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=29.33 E-value=54 Score=25.57 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=21.1
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHH
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKL 93 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKk 93 (178)
|+|++ ..||+.+.|.|+++.|+.|.=.
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 4 AHIEL-TINGHPVEALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHH
Confidence 45554 5599999999999999998533
No 347
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=28.91 E-value=67 Score=21.44 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=28.3
Q ss_pred cCccc--cCCC-CCCCHHHHHHHHhhhcCCceEEEEEccCCceE
Q 030379 38 DDPIL--ADVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSF 78 (178)
Q Consensus 38 ~Dp~L--~dlp-~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~ 78 (178)
.|-++ ++.| ...+.+++...|. ..|+.++|+|.+.+..++
T Consensus 55 GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~~~ 97 (99)
T 3khf_A 55 GDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALENTET 97 (99)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCSSCE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCCccc
Confidence 45443 3444 2457899999888 789999999987666554
No 348
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=28.32 E-value=59 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=20.6
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHHH
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLKL 93 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLKk 93 (178)
|.|++ ..||+.+.|.|+++.|+.|.=.
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 4 KIITV-NVNGKAQEKAVEPRTLLIHFLR 30 (163)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHH
Confidence 34444 4599999999999999998433
No 349
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=28.20 E-value=59 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=21.2
Q ss_pred eEEEEEccCCceEEEEeCCCCcHHHHH
Q 030379 66 MRISILKLDGTSFDVAVMNSATVKDLK 92 (178)
Q Consensus 66 MkLtV~k~dg~~~~V~V~~sATV~DLK 92 (178)
|.|++ ..||+.+.|.|+++.|+.|+=
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHHH
Confidence 55655 569999999999999999853
No 350
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=28.03 E-value=27 Score=23.57 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=36.4
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC---Cce--EEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD---GTS--FDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d---g~~--~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-++|..+.+ .+| ...+.|.... |.+ |.++. =.+..+..+||
T Consensus 23 ~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~--f~~~~~a~~Ai 78 (100)
T 2j76_E 23 FLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAE--FEDLDSLLSAL 78 (100)
T ss_dssp EESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEE--ECCHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEE--ECCHHHHHHHH
Confidence 3678999999999988876 578 7777775542 333 44332 24788999999
No 351
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=27.88 E-value=55 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=19.6
Q ss_pred ccCCceEEEEeCCCCcHHHHHHHH
Q 030379 72 KLDGTSFDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 72 k~dg~~~~V~V~~sATV~DLKkAI 95 (178)
..||+.+.|.|++..|+.|.=..+
T Consensus 8 ~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 8 TLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EETTEEEEEEEETTCBHHHHHHHT
T ss_pred EECCEEEEEecCCcCcHHHHHHHc
Confidence 449999999999999998865543
No 352
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=27.86 E-value=97 Score=21.00 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=25.9
Q ss_pred CHHHHHHHHhh-hcCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Ial-e~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++...++- ..|+.++|+|.+ +|+...+.|..
T Consensus 40 ~~~dl~~~l~~~~~g~~v~l~v~R-~g~~~~~~v~~ 74 (100)
T 3i18_A 40 SSQEFIDYIHSKKVGDTVKINYKH-GDKNEQADIKL 74 (100)
T ss_dssp SHHHHHHHHHTSCTTCEEEEEEEE-TTEEEEEEEEC
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEEEE
Confidence 57888888875 468999999965 78877666643
No 353
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=27.56 E-value=1.7e+02 Score=22.86 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=40.5
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.. .+|.-..+.+... +|.+-..-.-.=.+..+...|+...-
T Consensus 100 v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 100 VANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 678999999999998876 4898777766543 45553333333458889999987653
No 354
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=27.44 E-value=28 Score=25.26 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=37.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc--CCce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~--dg~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-+||..+.+ .+|....|.|... +|.+ +.++- =.|..+..+||...
T Consensus 51 ~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~--F~~~~~A~~Ai~~l 109 (135)
T 2lea_A 51 KVDNLTYRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVR--FHDKRDAEDAMDAM 109 (135)
T ss_dssp EEECCCSSCHHHHHHHHHG-GGSCCSEEECCCCSSSSSCCSCCEEE--CSCHHHHHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccceEEEEE--ECCHHHHHHHHHHc
Confidence 3678999999999988775 5888878877543 2333 33322 24788888887653
No 355
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=27.27 E-value=1e+02 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCC
Q 030379 49 PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 49 ~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
.+.+++...|.-++..+ .|.|...+|+.|.|.|-.
T Consensus 5 m~~~~I~~~L~~~l~~~-~l~V~~g~gshf~v~IVS 39 (82)
T 3tr3_A 5 VTTHDIKQWIETGLSES-RVISAEGDGHHFEAVVLC 39 (82)
T ss_dssp CCHHHHHHHHHHHSTTC-EEEEEEECSSEEEEEEEC
T ss_pred chHHHHHHHHHhhCCCc-EEEEEcCCCCeEEEEEEc
Confidence 47788999887777655 777766689999998753
No 356
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=27.23 E-value=1.2e+02 Score=20.78 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=25.4
Q ss_pred CHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++...|+- |..+.|+|.+ +|..+.+.|..
T Consensus 69 ~~~~~~~~l~~--~~~v~l~v~R-~g~~~~~~v~~ 100 (113)
T 2pzd_A 69 NAEDVYEAVRT--QSQLAVQIRR-GRETLTLYVTP 100 (113)
T ss_dssp SHHHHHHHHHH--CSSEEEEEEE-TTEEEEEEECC
T ss_pred CHHHHHHHHhC--CCeEEEEEEE-CCEEEEEEEEE
Confidence 67888887764 8999999955 78888888765
No 357
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=27.15 E-value=1.3e+02 Score=21.39 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=26.3
Q ss_pred CCceEEEEEccCCceE-EEEeCC-CCcHHHHHHHHHHHhcc
Q 030379 63 GSAMRISILKLDGTSF-DVAVMN-SATVKDLKLAIKKKVND 101 (178)
Q Consensus 63 G~AMkLtV~k~dg~~~-~V~V~~-sATV~DLKkAI~~~~~~ 101 (178)
|....|.-+-.....+ .|.++- ..+|.|||++|..+...
T Consensus 4 ~~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl 44 (86)
T 2c7h_A 4 GSMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL 44 (86)
T ss_dssp TTBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTC
T ss_pred cceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCC
Confidence 4445566655555444 566654 48999999999987643
No 358
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=26.52 E-value=71 Score=23.21 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=28.5
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+.|-..+|-.|.|+||-+.-+..-|++|++-..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermkd 71 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMKD 71 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHH
Confidence 455588999999999999999999999998754
No 359
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=26.36 E-value=73 Score=24.60 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=41.0
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCc--eEEEEEccCCc--eEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~A--MkLtV~k~dg~--~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+.+||..+|-++|..+.+ .+|.- ..+.|....|. -+.++ .=.+..+-.+||...-.
T Consensus 128 v~NLp~~~t~~~L~~~F~-~~G~v~~~~v~~~~~~~~~~g~gfV--~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 128 FFNAPLEVTEENFFEICD-ELGVKRPTSVKVFSGKSERSSSGLL--EWDSKSDALETLGFLNH 187 (205)
T ss_dssp EEEECTTCCHHHHHHHHH-HHTCCCCSEEEECSCCSSSSEEEEE--ECSSHHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCcceEEEEEEcCCCCCceEEEE--EeCCHHHHHHHHHHhCC
Confidence 568999999999988775 48876 67777555443 35443 34589999999998754
No 360
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=26.19 E-value=1.1e+02 Score=20.10 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=24.1
Q ss_pred CHHHHHHHHhh-hcCCceEEEEEccCCceEEEEe
Q 030379 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (178)
Q Consensus 50 t~~ev~~~Ial-e~G~AMkLtV~k~dg~~~~V~V 82 (178)
+.+|+..+++. ..|+.++|+|.+ +|..+.+.|
T Consensus 53 ~~~d~~~~~~~~~~g~~v~l~v~R-~g~~~~~~v 85 (87)
T 2i6v_A 53 DPNVMNTLFQSMNEMTEMSLTVER-DGQQHDVYI 85 (87)
T ss_dssp CHHHHHHHHHTGGGCSEEEEEEEE-TTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEE-CCEEEEEEE
Confidence 67888887764 468999999954 777766654
No 361
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=25.97 E-value=1.1e+02 Score=24.23 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=31.1
Q ss_pred ceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 65 AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
-+.|.|-..||....|.|+.+.|+.||-+.+..+..
T Consensus 34 k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH 69 (291)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred ceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC
Confidence 466788889999999999999999999988877764
No 362
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.91 E-value=34 Score=23.70 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=35.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCc-eEEEEEcc-CCce--EEEEeCCCCcHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSA-MRISILKL-DGTS--FDVAVMNSATVKDLKLAIKK 97 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~A-MkLtV~k~-dg~~--~~V~V~~sATV~DLKkAI~~ 97 (178)
++.+||.++|-+||..+..- +|.. ..|.|... +|.+ |.++. =++..+..+||..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~--F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQ--FKNEDDARKSERL 76 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEE--CSSHHHHHHHGGG
T ss_pred EEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEE--ECCHHHHHHHHHh
Confidence 46789999999999887754 5766 33444322 4443 44432 3488888888866
No 363
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=25.59 E-value=1.5e+02 Score=19.50 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=39.2
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.+ .+|.-..+.+.+..| |.++. =.+..+...||...-
T Consensus 31 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~~~~g--~afV~--f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 31 YIGNIPHFATEADLIPLFQ-NFGFILDFKHYPEKG--CCFIK--YDTHEQAAVCIVALA 84 (101)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCCSEEEEETTTT--EEEEE--CSSHHHHHHHHHHHT
T ss_pred EEcCCCcccCHHHHHHHHH-hCCCEEEEEEecCCC--EEEEE--ECCHHHHHHHHHHhC
Confidence 3678999999999998775 689888888864433 33332 247888888887543
No 364
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=25.53 E-value=2e+02 Score=21.14 Aligned_cols=75 Identities=21% Similarity=0.445 Sum_probs=51.6
Q ss_pred eEEEEEccCC---ceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCC--ccccCCcchhhhc
Q 030379 66 MRISILKLDG---TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN--QKLLDENSALQDC 140 (178)
Q Consensus 66 MkLtV~k~dg---~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g--~kLldD~~tL~dy 140 (178)
++|+|--.+. ....+.|.-+.-|.-+--.+-+..... --|..+-|.... +=|+.-..+|..|
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-------------~dWSDhaLWW~~k~~WLlkt~~tLDky 86 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-------------QDWSDYALWWEQKRCWLLKTHWTLDKC 86 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-------------SCCSSEEEEETTTTEEECCTTSBHHHH
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-------------cchHHhhhhhhhhchhhhhhhhhhhhh
Confidence 5666655444 447788887788998877666554311 135555555553 3356778899999
Q ss_pred CCCCCCEEEEEee
Q 030379 141 GVRNNSQVQFVPF 153 (178)
Q Consensus 141 GIkdgd~L~F~~r 153 (178)
||.....|+|-+.
T Consensus 87 giqADa~L~ftp~ 99 (102)
T 2kmc_A 87 GVQADANLLFTPQ 99 (102)
T ss_dssp TCCTTSCEEEEEC
T ss_pred ceeeeeeeeccCC
Confidence 9999999999764
No 365
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=25.08 E-value=29 Score=23.77 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=35.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCC---ceEEEEEc-cCCce--EEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGS---AMRISILK-LDGTS--FDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~---AMkLtV~k-~dg~~--~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-++|..... .+|. ...|.|.. .+|.+ |.++. -++..+.++||.
T Consensus 15 ~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~g~~~G~afV~--F~~~~~a~~Al~ 73 (107)
T 2lmi_A 15 RAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIE--MESEQDVQKALE 73 (107)
T ss_dssp EEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTTSTTCSEEEEE--BSSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCCCCEeeEEEEE--ECCHHHHHHHHH
Confidence 4678999999999998876 5554 44444432 22444 44432 358889999998
No 366
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=25.06 E-value=1.5e+02 Score=19.91 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=36.6
Q ss_pred cccCCCCC-CCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKK-PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~-~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.+ +|-+||..+.. .+|.-..+.+. .-|.++- =.+..+...||...
T Consensus 31 ~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i~----~g~afV~--f~~~~~A~~A~~~l 82 (110)
T 1wf1_A 31 FIGNLNTALVKKSDVETIFS-KYGRVAGCSVH----KGYAFVQ--YSNERHARAAVLGE 82 (110)
T ss_dssp EECSCCCSSCCHHHHHHHHG-GGSCCSEEEEE----TTEEEEE--CSSSHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHHHHHH-hCCCeEEEEEe----CCEEEEE--ECCHHHHHHHHHHc
Confidence 46789999 99999998886 68988888772 2243332 24677888888754
No 367
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=25.05 E-value=45 Score=24.12 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHhhhcCCc---eEEEEEccCCc
Q 030379 44 DVPKKPTLSDVDTLISLEMGSA---MRISILKLDGT 76 (178)
Q Consensus 44 dlp~~~t~~ev~~~Iale~G~A---MkLtV~k~dg~ 76 (178)
++|+..|+++|...|+-..|-+ |+|+....+|.
T Consensus 23 ~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~ 58 (122)
T 1t0y_A 23 KYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQ 58 (122)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSS
T ss_pred EeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCc
Confidence 5889999999999999999944 99998654554
No 368
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=25.01 E-value=38 Score=23.08 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=25.7
Q ss_pred CHHHHHHHHhhh-cCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLE-MGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale-~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++..+|+-. .|+.++|+|.+ +|+.+.+.|..
T Consensus 34 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v~~ 68 (91)
T 2kjp_A 34 SAEKLIDYISSKKAGDKVTLKIER-EEKEKRVTLTL 68 (91)
T ss_dssp SHHHHHHHHSSCCSSCEECEEEES-SSCEECCCEEC
T ss_pred CHHHHHHHHHcCCCCCEEEEEEEE-CCEEEEEEEEE
Confidence 578888888765 69999999965 68777666543
No 369
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=25.01 E-value=58 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=24.9
Q ss_pred CHHHHHHHHh-hhcCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLIS-LEMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Ia-le~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+.+++...+. ...|+.++|+| ++|+ +.|.+..
T Consensus 58 ~~~dl~~~l~~~~~g~~v~l~V--R~g~-~~v~l~~ 90 (125)
T 2hga_A 58 NLTTYSAALKTISVGEVINITT--DQGT-FHLKTGR 90 (125)
T ss_dssp SHHHHHHHHTTCCTTCEEEEEE--TTEE-EEEECCB
T ss_pred CHHHHHHHHHhcCCCCEEEEEE--ECCE-EEEEEec
Confidence 6788888887 46799999999 6777 7766653
No 370
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=24.70 E-value=64 Score=21.40 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=34.3
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCce--EEEEeCCCCcHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTS--FDVAVMNSATVKDLKLAIK 96 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~--~~V~V~~sATV~DLKkAI~ 96 (178)
++.+||.++|-++|..+.. .+|.-..+.+... +|.+ |.++. =.+..+..+||.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~--f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 13 FVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDRTGVSKGYGFVS--FYNDVDVQKIVE 68 (102)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEE--ESSCCCHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCccceEEEE--ECCHHHHHHHHh
Confidence 3568999999999998774 5888877777554 3333 33332 224445566666
No 371
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=24.52 E-value=67 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeC
Q 030379 48 KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVM 83 (178)
Q Consensus 48 ~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~ 83 (178)
..+.+++..+|.-. +..+.|+|.+ +|..+.+.|+
T Consensus 58 ~~~~~~~~~~l~~~-~~~v~l~v~r-~g~~~~~~v~ 91 (92)
T 3cyy_A 58 NMSLTDAKTLIERS-KGKLKMVVQR-DERATLLNVP 91 (92)
T ss_dssp TCCHHHHHHHHHTT-TTEEEEEEEC-----------
T ss_pred CCCHHHHHHHHHcC-CCcEEEEEEe-CCceeeeeCC
Confidence 34788998888753 4588999954 6666666654
No 372
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=24.04 E-value=73 Score=22.86 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc
Q 030379 78 FDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 78 ~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+.+.|+.+||=-|.|+||+..|.
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~ 47 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFG 47 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhC
Confidence 67888999999999999999985
No 373
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=23.88 E-value=15 Score=24.61 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCceEEEEeCCCCcHHHHHHHHHHHhccccccccCccccccccccceeEEecCCccccCCcchhhhcCCCCCCEEEEEee
Q 030379 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 74 dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r~~g~~~ISW~~VW~~~~L~~~g~kLldD~~tL~dyGIkdgd~L~F~~r 153 (178)
++.. ++++..+||.||...+. ++ +. ...+.-+|+.+ +. +.-+++||+|-|.+-
T Consensus 21 n~~~--~~~~~~~Tv~dLl~~L~--~~--~~---------------~v~VavNg~~v-~~-----~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKE--IEWREGMKVRDILRAVG--FN--TE---------------SAIAKVNGKVV-LE-----DDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCC--CCCCSSCCHHHHHHTTT--CS--SC---------------SSCEEETTEEE-CS-----SSCCCSSCCCBCSCC
T ss_pred CCEE--EECCCCCcHHHHHHHhC--CC--Cc---------------CEEEEECCEEC-CC-----CCCcCCCCEEEEEcc
Confidence 4444 45577899999987654 11 11 11233445433 32 256999999888765
Q ss_pred e
Q 030379 154 V 154 (178)
Q Consensus 154 l 154 (178)
+
T Consensus 74 v 74 (77)
T 1rws_A 74 V 74 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 374
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=23.85 E-value=86 Score=22.03 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeC
Q 030379 49 PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVM 83 (178)
Q Consensus 49 ~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~ 83 (178)
.+.+|+..+|.-..|+.++|+|.+ +|..+.+.|.
T Consensus 69 ~~~~~~~~~l~~~~g~~v~l~v~R-~g~~~~~~~~ 102 (127)
T 1b8q_A 69 LSYDSALEVLRGIASETHVVLILR-GPEGFTTHLE 102 (127)
T ss_dssp SCHHHHHHHHHSCCSSCEEEEEEC-CCCSEEECCC
T ss_pred CCHHHHHHHHHhCCCCeEEEEEEe-CCceEEEEEE
Confidence 468999999987789999999965 6676666654
No 375
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=23.67 E-value=49 Score=24.37 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.1
Q ss_pred EEEEccCCceEEEEeCCCCcHHHHHHHHHHHhc
Q 030379 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 68 LtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
+.|-..+|-.|.|+||-+.-+..-|++|++-..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~ermkd 70 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERMKD 70 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHH
Confidence 445578999999999999999999999998753
No 376
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.19 E-value=92 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred EEEEEccCCceEEEEeCCCCcHHHH
Q 030379 67 RISILKLDGTSFDVAVMNSATVKDL 91 (178)
Q Consensus 67 kLtV~k~dg~~~~V~V~~sATV~DL 91 (178)
+|++...+|....|.++...|+.|.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHH
Confidence 6888889999999999999999874
No 377
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.91 E-value=99 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhcc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVND 101 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~ 101 (178)
..+.+.|+..||=-|.|+||+..|.-
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~V 53 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEV 53 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 45778889999999999999999963
No 378
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=22.89 E-value=1.2e+02 Score=23.24 Aligned_cols=29 Identities=34% Similarity=0.347 Sum_probs=22.8
Q ss_pred eEEEEEccCCceE-EEEeCCCCcHHHHHHH
Q 030379 66 MRISILKLDGTSF-DVAVMNSATVKDLKLA 94 (178)
Q Consensus 66 MkLtV~k~dg~~~-~V~V~~sATV~DLKkA 94 (178)
|-|.|.....++| .|++|++||-.|==+|
T Consensus 69 I~~gv~~e~~~~fIQi~LP~~AThGDKgKA 98 (126)
T 1t6a_A 69 MAISVRTAGEETFIDIALPPGATHGDKGKA 98 (126)
T ss_dssp EEEEEEEETTEEEEEEECCTTCCHHHHHHH
T ss_pred EEEeecccCCcceEEEECCCCCCcCcchhH
Confidence 6677877777664 8999999999996554
No 379
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=22.83 E-value=85 Score=21.40 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=30.5
Q ss_pred cCcccc--CCC-CCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeC
Q 030379 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVM 83 (178)
Q Consensus 38 ~Dp~L~--dlp-~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~ 83 (178)
.|-+++ +.| ...+.+|+..+|.-..|+.+.|+|.+ +|..+.+.+.
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R-~g~~~~~~~~ 95 (112)
T 1qau_A 48 GDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR-GPEGFTTHLE 95 (112)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE-CCTTSEEEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEe-CCcccceEee
Confidence 455543 332 23468999999988789999999965 5666555543
No 380
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=22.72 E-value=1.5e+02 Score=19.91 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=22.8
Q ss_pred CHHHHHHHHhhhcC-CceEEEEEccCC-ceEEEEe
Q 030379 50 TLSDVDTLISLEMG-SAMRISILKLDG-TSFDVAV 82 (178)
Q Consensus 50 t~~ev~~~Iale~G-~AMkLtV~k~dg-~~~~V~V 82 (178)
+.+++...|.-..+ +.+.|+|.+.++ ....+.|
T Consensus 36 ~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l 70 (95)
T 3id1_A 36 DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKL 70 (95)
T ss_dssp SHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEE
Confidence 67889888876655 789999977653 3334433
No 381
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=22.29 E-value=85 Score=24.30 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhhhcCCceEEEEEccCC-ceEEEEeCC
Q 030379 49 PTLSDVDTLISLEMGSAMRISILKLDG-TSFDVAVMN 84 (178)
Q Consensus 49 ~t~~ev~~~Iale~G~AMkLtV~k~dg-~~~~V~V~~ 84 (178)
.+.+|+...|+-..|+.+.|+|.+.++ ..+.|+|.+
T Consensus 145 ~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p 181 (209)
T 3rle_A 145 NESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 181 (209)
T ss_dssp CSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECC
T ss_pred CCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEe
Confidence 467888888887789999999987766 557888765
No 382
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=22.29 E-value=35 Score=22.40 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=36.5
Q ss_pred cccCCCCCCCHHHHHH---HHhhhcCCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDT---LISLEMGSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~---~Iale~G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-+||.. .+--.+|....+.+.+ +|.. +.++- =.+..+...|+...-
T Consensus 12 ~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~--f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 12 YINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVI--FKEVSSATNALRSMQ 72 (97)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEE--ESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEE--eCCHHHHHHHHHHhC
Confidence 3678999999999983 3334688877777753 2222 33322 247888888887653
No 383
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=22.25 E-value=79 Score=22.25 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
..+.+.|+.+||=-|.|+||++.|.-.
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~Vk 49 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVT 49 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 457788999999999999999999643
No 384
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.22 E-value=47 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.9
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEc
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILK 72 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k 72 (178)
+.+||.++|-++|..+.+ .+|.-..+.|.+
T Consensus 10 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~ 39 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFS-QYGDVMDVFIPK 39 (88)
T ss_dssp EESCCSSSCHHHHHHHST-TTSCCCEEECCS
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCeeEEEEec
Confidence 567999999999988775 788877777754
No 385
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=21.92 E-value=65 Score=22.94 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=35.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceE--------EEEEccCCce--EEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMR--------ISILKLDGTS--FDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMk--------LtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.. .+|.-.. +.+.. +|.+ |.++. =.+..+..+||...-
T Consensus 49 ~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~--f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 49 YVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMK-EGRMKGQAFIG--LPNEKAAAKALKEAN 113 (143)
T ss_dssp EEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEE--CSSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEecc-CCCcccEEEEE--eCCHHHHHHHHHHhC
Confidence 4566899999999998775 6786432 33322 3433 44433 358888888888653
No 386
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=21.81 E-value=1.1e+02 Score=19.26 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=33.7
Q ss_pred cccCCCCCCCHHHHHHHHhhhc---C-------CceEEEEEccCCceEEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEM---G-------SAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~---G-------~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-+||.....--. | ....+.+.+..| +.++- =.+..+..+|+
T Consensus 10 ~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg--~afV~--f~~~~~a~~A~ 70 (87)
T 2hzc_A 10 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLE--FRSVDETTQAM 70 (87)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSS--EEEEE--ESSHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCc--EEEEE--cCCHHHHHHHH
Confidence 3568999999999988775332 6 666677654433 33322 24778888888
No 387
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=21.75 E-value=2.4e+02 Score=20.55 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=35.2
Q ss_pred HhhhcCCceEEEEEccCCceE------EEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 58 ISLEMGSAMRISILKLDGTSF------DVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 58 Iale~G~AMkLtV~k~dg~~~------~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
|.-.+..-+-|.|.+..++.+ ...||.+.||+++-..|.+.....+.
T Consensus 21 ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~ 73 (117)
T 1eo6_A 21 IRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSE 73 (117)
T ss_dssp HHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTT
T ss_pred HHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCC
Confidence 344566778888888766532 44688999999999999999866544
No 388
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=21.66 E-value=1.9e+02 Score=20.57 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
+.+||.++|-++|..+.. .+|.-..+.|.+. ..-|.++- =.+..+...||...-
T Consensus 78 V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~afV~--f~~~~~a~~A~~~l~ 131 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFG-YYGPLRSVWVARN-PPGFAFVE--FEDPRDAADAVRELD 131 (150)
T ss_dssp EESCCSCCSCHHHHHHHH-HHSCEEEEEECSS-SCSEEEEE--ESSHHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-hhCCEEEEEEeeC-CCcEEEEE--ECCHHHHHHHHHHcC
Confidence 568999999999988876 6898888888554 23354432 247888888887653
No 389
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=21.58 E-value=1.1e+02 Score=22.69 Aligned_cols=26 Identities=4% Similarity=0.174 Sum_probs=21.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccccc
Q 030379 79 DVAVMNSATVKDLKLAIKKKVNDMEQ 104 (178)
Q Consensus 79 ~V~V~~sATV~DLKkAI~~~~~~~~~ 104 (178)
.+-|..++|+.+|+..|++.+...+.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~ 84 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQD 84 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGG
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcc
Confidence 45678899999999999999976544
No 390
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=21.52 E-value=80 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=24.8
Q ss_pred cCccc--cCCCC-CCCHHHHHHHHhhhcCCceEEEEEccCC
Q 030379 38 DDPIL--ADVPK-KPTLSDVDTLISLEMGSAMRISILKLDG 75 (178)
Q Consensus 38 ~Dp~L--~dlp~-~~t~~ev~~~Iale~G~AMkLtV~k~dg 75 (178)
.|-++ ++.|- ..+.+|+..+|.-. |+.++|+|.+.+.
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 87 (91)
T 2vsp_A 48 EDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKA 87 (91)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC---
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCc
Confidence 45443 34432 35899999999877 9999999976544
No 391
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=21.40 E-value=1.3e+02 Score=20.51 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=24.8
Q ss_pred CHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCC
Q 030379 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (178)
Q Consensus 50 t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~ 84 (178)
+..++...+ ..|+.++|+|.+ +|..+.+.|..
T Consensus 69 ~~~~~~~~l--~~g~~v~l~v~R-~g~~~~~~v~~ 100 (112)
T 2p3w_A 69 DSSELQEAV--LTESPLLLEVRR-GNDDLLFSIAP 100 (112)
T ss_dssp SHHHHHHHH--HHCSSEEEEEEE-TTEEEEEEECC
T ss_pred CHHHHHHHH--hCCCeEEEEEEE-CCEEEEEEEEE
Confidence 678888777 469999999955 68888777754
No 392
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=21.31 E-value=2e+02 Score=22.37 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=41.2
Q ss_pred cccCCCCCC-CHHHHHHHHhhhcCCceEEEEEc-cCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKP-TLSDVDTLISLEMGSAMRISILK-LDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~-t~~ev~~~Iale~G~AMkLtV~k-~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||..+ |-++|..+.. .+|.-..+.|.. .+|.+-....-.=.|..+-.+|+...-
T Consensus 188 ~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 188 CVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp EEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 467899996 7888887776 789887777655 355544443334568899999998664
No 393
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=21.30 E-value=2.7e+02 Score=21.70 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHh
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~ 99 (178)
++.+||.++|-++|..+.. .+|.-..|.+.+..| +.++- =+|..+-..|+...-
T Consensus 26 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~kg--~afV~--f~~~~~A~~A~~~l~ 79 (261)
T 3sde_A 26 FVGNLPTDITEEDFKRLFE-RYGEPSEVFINRDRG--FGFIR--LESRTLAEIAKAELD 79 (261)
T ss_dssp EEESCCTTCCHHHHHHHTG-GGCCCSEEEEETTTT--EEEEE--CSSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCCCc--EEEEE--ECCHHHHHHHHHHcC
Confidence 4678999999999998875 689988888866544 33332 347888888988553
No 394
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=21.27 E-value=1.3e+02 Score=30.21 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=53.7
Q ss_pred hcCCceEEEEEccCCceEEEEeCCCCcHHHHHHHHHHHhcccccc-ccCccccccccccceeEEecC---C--ccccCCc
Q 030379 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQS-NLGHRHISWKHVWANYCLSHQ---N--QKLLDEN 134 (178)
Q Consensus 61 e~G~AMkLtV~k~dg~~~~V~V~~sATV~DLKkAI~~~~~~~~~r-~~g~~~ISW~~VW~~~~L~~~---g--~kLldD~ 134 (178)
+..+.+.|...--+|..+.+.|+.++|+.++|..+-.....+|-- ..+ --..|.+.+- | +.+.|+.
T Consensus 47 ~~~~~v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~--------~~~~Y~f~~i~~~~e~ee~~de~ 118 (1092)
T 2y3a_A 47 ASDGAISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLM--------DIDSYMFACVNQTAVYEELEDET 118 (1092)
T ss_dssp SCCSEEEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCC--------CGGGEEEEEEBSSSCEEECCCTT
T ss_pred CCCCceEEEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccC--------CcceeEEEEecCCceEEEeecCc
Confidence 455778888888899999999999999999999888775443210 000 0113444442 2 2356777
Q ss_pred chhhhcCCCCCCEEEEEee
Q 030379 135 SALQDCGVRNNSQVQFVPF 153 (178)
Q Consensus 135 ~tL~dyGIkdgd~L~F~~r 153 (178)
..|.|.-.-- ..+.++.+
T Consensus 119 ~~l~~~~~~~-p~l~lve~ 136 (1092)
T 2y3a_A 119 RRLCDVRPFL-PVLKLVTR 136 (1092)
T ss_dssp SBSGGGCBSS-SCEEEEES
T ss_pred eeeEeecccc-eEEEEEec
Confidence 8888764332 23555555
No 395
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=21.17 E-value=2.5e+02 Score=20.65 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=40.1
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccCCceE-EEEeCCCCcHHHHHHHHHHHhc
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF-DVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~dg~~~-~V~V~~sATV~DLKkAI~~~~~ 100 (178)
..+||..+|.++|..+ =-.+|.-.+|.+..... -| .++.- .++.+-+.||+..-.
T Consensus 33 V~NL~~~vte~~L~~l-Fs~yG~V~~V~i~~~~~-gfqAFVef--~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 33 VENLFYPVTLDVLHQI-FSKFGTVLKIITFTKNN-QFQALLQY--ADPVSAQHAKLSLDG 88 (130)
T ss_dssp EESCCSCCCHHHHHHH-HTTSSCEEEEEEEEETT-EEEEEEEE--SCHHHHHHHHHHHTT
T ss_pred ECCCCCCCCHHHHHHH-HhCcCCEEEEEEEcCCC-CcEEEEEE--CCHHHHHHHHHHcCC
Confidence 4579999999998855 45899998888866543 33 44433 378899999987754
No 396
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.95 E-value=1.2e+02 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.2
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHhccc
Q 030379 76 TSFDVAVMNSATVKDLKLAIKKKVNDM 102 (178)
Q Consensus 76 ~~~~V~V~~sATV~DLKkAI~~~~~~~ 102 (178)
..+.+.|+..||=-+.|+||++.|.-.
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~Vk 50 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVK 50 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCC
Confidence 457788899999999999999999643
No 397
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.94 E-value=1.1e+02 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=23.7
Q ss_pred CHHHHHHHHhh-hcCCceEEEEEccCCceEEEEe
Q 030379 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (178)
Q Consensus 50 t~~ev~~~Ial-e~G~AMkLtV~k~dg~~~~V~V 82 (178)
+.+|+..+++- ..|..++|+|.+ +|..+.+.|
T Consensus 71 ~~~d~~~~~~~~~~g~~v~l~v~R-~g~~~~~~v 103 (105)
T 2i4s_A 71 DPNVMNTLFQSMNEMTEMSLTVER-DGQQHDVYI 103 (105)
T ss_dssp STTHHHHHHHHHTTCSEEEEEEEE-TTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCeEEEEEEE-CCEEEEEEE
Confidence 56778777764 568999999954 777776655
No 398
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=20.70 E-value=46 Score=24.71 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=36.1
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCceEEEEEcc-CCce--EEEEeCCCCcHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTS--FDVAVMNSATVKDLKLAI 95 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~-dg~~--~~V~V~~sATV~DLKkAI 95 (178)
++.+||.++|-+||..... .+| ...|.|... +|.+ |.++. =+|..|.++||
T Consensus 50 fV~nLp~~~te~dL~~~F~-~~G-i~~v~i~~d~~g~srGfaFV~--F~~~e~A~~Al 103 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFS-PLN-PVRVHIEIGPDGRVTGEADVE--FATHEEAVAAM 103 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHC-SCC-CSEEECCCSSSSCSSCCCEEE--CSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEECCCCCCceEEEEE--eCCHHHHHHHH
Confidence 5678999999999998876 577 556766432 2333 44332 35889999999
No 399
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=20.68 E-value=87 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCce--EEEEeCCCCcHHHHHHHHHHHhc
Q 030379 63 GSAMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKVN 100 (178)
Q Consensus 63 G~AMkLtV~k~dg~~--~~V~V~~sATV~DLKkAI~~~~~ 100 (178)
|.+|++++.+.++.. +.|+|+. .+++.++.+.+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v~~----~~~~~~~~~~~~ 36 (392)
T 1t11_A 1 GSHMQVTVETLEGLQRRLNITVPA----ANIEDAVAAELR 36 (392)
T ss_dssp --CCEEEEEECSTTEEEEEEEECH----HHHHHHHHHHHH
T ss_pred CCcceEEEEEcCCcEEEEEEEEcH----HHHHHHHHHHHH
Confidence 778999999999877 5666664 666666666653
No 400
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.35 E-value=1.1e+02 Score=20.39 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=36.9
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCC-ceEEEEEccC---Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 41 ILADVPKKPTLSDVDTLISLEMGS-AMRISILKLD---GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 41 ~L~dlp~~~t~~ev~~~Iale~G~-AMkLtV~k~d---g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
++.+||.++|-++|..+.+ .+|. ...+.+...+ |.+ |.++- =.+..+...||...
T Consensus 12 ~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~--f~~~~~A~~A~~~l 72 (109)
T 2dis_A 12 FIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVE--YESHRAAAMARRKL 72 (109)
T ss_dssp EEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEE--ESSHHHHHHHHTTT
T ss_pred EEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEE--ecCHHHHHHHHHHh
Confidence 3568999999999987775 5676 7777775222 122 44432 24788888888754
No 401
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=20.34 E-value=62 Score=20.89 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=34.8
Q ss_pred ccCCCCCCCHHHHHHHHhhhcCCceEEEEEccC--Cce--EEEEeCCCCcHHHHHHHHHHH
Q 030379 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FDVAVMNSATVKDLKLAIKKK 98 (178)
Q Consensus 42 L~dlp~~~t~~ev~~~Iale~G~AMkLtV~k~d--g~~--~~V~V~~sATV~DLKkAI~~~ 98 (178)
+.+||.++|-++|..+.+ .+|....+.+.... |.+ +.++.=. +.. -.+|+...
T Consensus 6 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~~-a~~a~~~l 62 (90)
T 2ki2_A 6 VGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQ--EES-VSEAIAKL 62 (90)
T ss_dssp EEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEEC--TTH-HHHHHHTS
T ss_pred ECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEEC--CHH-HHHHHHHh
Confidence 467999999999998876 58988888886442 333 4443322 334 56666643
Done!