Query 030381
Match_columns 178
No_of_seqs 144 out of 1126
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 2.1E-29 4.5E-34 197.0 17.8 145 2-146 39-184 (223)
2 COG0586 DedA Uncharacterized m 100.0 1E-27 2.2E-32 186.1 15.6 149 5-154 10-170 (208)
3 PF09335 SNARE_assoc: SNARE as 99.9 2.3E-25 4.9E-30 158.9 14.5 120 28-147 1-123 (123)
4 PRK10847 hypothetical protein; 99.9 4.7E-25 1E-29 172.5 11.9 141 10-151 28-181 (219)
5 COG1238 Predicted membrane pro 99.8 1.9E-18 4.1E-23 128.2 15.5 142 6-149 13-157 (161)
6 KOG3140 Predicted membrane pro 99.7 4.6E-16 9.9E-21 124.4 10.2 156 4-159 88-245 (275)
7 PF06695 Sm_multidrug_ex: Puta 97.9 0.00036 7.7E-09 49.7 10.6 98 41-139 14-120 (121)
8 COG3763 Uncharacterized protei 88.7 0.91 2E-05 28.9 3.8 30 43-72 3-32 (71)
9 PF07155 ECF-ribofla_trS: ECF- 88.6 2.8 6.1E-05 31.0 7.2 54 8-61 5-69 (169)
10 PRK11677 hypothetical protein; 88.1 1.5 3.3E-05 31.7 5.2 24 47-70 3-26 (134)
11 PRK09609 hypothetical protein; 88.0 7.4 0.00016 32.1 9.7 28 32-59 45-72 (312)
12 PRK00523 hypothetical protein; 86.4 4.3 9.4E-05 26.0 5.9 31 44-74 5-35 (72)
13 PRK01844 hypothetical protein; 85.6 4.2 9E-05 26.1 5.6 32 43-74 3-34 (72)
14 PF01148 CTP_transf_1: Cytidyl 82.1 4.6 9.9E-05 31.6 5.9 41 43-84 128-168 (259)
15 COG2426 Predicted membrane pro 79.9 20 0.00043 25.8 9.9 107 38-146 15-137 (142)
16 PRK13661 hypothetical protein; 79.8 12 0.00026 28.5 7.2 32 30-61 40-71 (182)
17 COG1238 Predicted membrane pro 78.7 14 0.0003 27.6 7.1 68 86-154 10-82 (161)
18 COG0575 CdsA CDP-diglyceride s 76.8 1.9 4E-05 34.7 2.1 33 46-78 135-167 (265)
19 COG2839 Uncharacterized protei 74.7 32 0.00069 25.4 8.5 28 14-41 11-38 (160)
20 PRK11624 cdsA CDP-diglyceride 74.1 2.8 6.1E-05 34.2 2.6 38 47-84 154-191 (285)
21 PF06295 DUF1043: Protein of u 74.0 6.6 0.00014 28.0 4.2 22 50-71 2-23 (128)
22 PRK10527 hypothetical protein; 73.5 15 0.00033 26.2 5.9 46 23-93 21-66 (125)
23 PF03672 UPF0154: Uncharacteri 72.7 12 0.00026 23.5 4.6 26 49-74 2-27 (64)
24 PRK10847 hypothetical protein; 71.9 25 0.00055 27.3 7.4 66 85-150 17-98 (219)
25 COG3105 Uncharacterized protei 70.6 15 0.00032 26.4 5.2 26 45-70 6-31 (138)
26 PF06305 DUF1049: Protein of u 67.7 25 0.00053 21.6 5.4 11 81-91 55-65 (68)
27 TIGR03750 conj_TIGR03750 conju 64.3 47 0.001 23.2 8.0 12 83-94 83-94 (111)
28 PF10031 DUF2273: Small integr 61.4 32 0.0007 20.4 5.8 24 40-68 26-49 (51)
29 KOG1109 Vacuole membrane prote 60.9 3.6 7.7E-05 34.9 0.6 87 52-138 217-322 (440)
30 TIGR02359 thiW thiW protein. L 59.9 70 0.0015 23.8 10.6 32 30-61 34-65 (160)
31 PF11990 DUF3487: Protein of u 59.1 62 0.0013 22.9 8.4 12 83-94 86-97 (121)
32 PF14163 SieB: Superinfection 55.4 77 0.0017 22.9 7.9 43 21-63 8-55 (151)
33 COG3086 RseC Positive regulato 55.0 58 0.0013 23.9 6.0 25 48-72 104-128 (150)
34 COG4732 Predicted membrane pro 54.2 38 0.00083 25.1 4.9 51 6-56 7-66 (177)
35 PF12822 DUF3816: Protein of u 51.1 23 0.00051 25.9 3.6 31 30-60 31-61 (172)
36 PRK11677 hypothetical protein; 48.2 46 0.00099 24.1 4.6 26 43-68 3-28 (134)
37 PF13314 DUF4083: Domain of un 46.8 55 0.0012 20.0 4.0 14 80-93 45-58 (58)
38 COG3808 OVP1 Inorganic pyropho 45.9 1.2E+02 0.0025 27.4 7.4 102 49-156 522-646 (703)
39 PF10319 7TM_GPCR_Srj: Serpent 45.6 1.8E+02 0.0038 24.2 9.0 89 42-136 196-292 (310)
40 PF04246 RseC_MucC: Positive r 44.7 1E+02 0.0022 21.8 6.0 25 47-71 96-120 (135)
41 PLN02953 phosphatidate cytidyl 44.5 15 0.00033 31.4 1.9 36 47-83 271-306 (403)
42 TIGR00937 2A51 chromate transp 43.9 2E+02 0.0043 24.4 8.5 58 6-63 234-291 (368)
43 PF11286 DUF3087: Protein of u 43.5 1.3E+02 0.0028 22.6 6.5 56 49-104 51-117 (165)
44 PRK10862 SoxR reducing system 42.8 60 0.0013 23.9 4.6 24 48-71 104-127 (154)
45 PLN02594 phosphatidate cytidyl 42.3 47 0.001 27.9 4.4 36 48-84 128-163 (342)
46 COG2832 Uncharacterized protei 42.1 93 0.002 22.0 5.2 23 71-93 44-66 (119)
47 PF03613 EIID-AGA: PTS system 41.4 1.8E+02 0.0038 23.5 7.5 96 40-140 132-230 (264)
48 TIGR00814 stp serine transport 41.3 1.2E+02 0.0027 25.8 6.9 87 8-104 4-90 (397)
49 PRK11469 hypothetical protein; 39.8 1.7E+02 0.0036 22.3 9.7 39 112-150 122-160 (188)
50 PRK14400 membrane protein; Pro 38.9 89 0.0019 24.2 5.2 59 46-104 7-78 (201)
51 COG4720 Predicted membrane pro 38.9 73 0.0016 24.2 4.5 32 31-62 41-72 (177)
52 COG0170 SEC59 Dolichol kinase 38.3 48 0.001 25.8 3.7 39 44-84 113-151 (216)
53 COG2059 ChrA Chromate transpor 37.2 93 0.002 24.0 5.0 64 88-153 41-107 (195)
54 PF01810 LysE: LysE type trans 37.0 1.7E+02 0.0037 21.6 9.5 29 123-151 135-163 (191)
55 PRK14407 membrane protein; Pro 36.7 72 0.0016 25.1 4.4 36 45-80 6-42 (219)
56 PF06695 Sm_multidrug_ex: Puta 35.8 1.3E+02 0.0029 21.0 5.4 45 48-93 17-61 (121)
57 PF03030 H_PPase: Inorganic H+ 35.7 99 0.0022 28.6 5.7 73 80-156 560-634 (682)
58 PRK00733 hppA membrane-bound p 35.4 1.6E+02 0.0034 27.2 6.8 34 123-156 576-609 (666)
59 COG1811 Uncharacterized membra 35.0 2.3E+02 0.0049 22.4 7.1 26 94-120 98-123 (228)
60 COG4732 Predicted membrane pro 34.9 70 0.0015 23.8 3.8 20 53-72 143-162 (177)
61 PRK03072 heat shock protein Ht 34.7 1.3E+02 0.0028 24.5 5.8 34 35-69 22-55 (288)
62 PF07332 DUF1469: Protein of u 34.3 1.5E+02 0.0033 20.2 7.7 27 42-68 70-96 (121)
63 PRK04897 heat shock protein Ht 33.9 2.5E+02 0.0054 22.9 7.4 26 44-69 40-65 (298)
64 PRK12821 aspartyl/glutamyl-tRN 33.8 62 0.0014 28.3 3.9 27 31-57 99-125 (477)
65 PRK00220 putative glycerol-3-p 33.6 1.3E+02 0.0029 23.1 5.4 57 49-105 8-77 (198)
66 PF04123 DUF373: Domain of unk 33.4 2.8E+02 0.006 23.4 7.6 43 25-71 162-205 (344)
67 PRK14402 membrane protein; Pro 32.9 1.6E+02 0.0036 22.7 5.8 60 45-105 4-76 (198)
68 PF12732 YtxH: YtxH-like prote 32.9 94 0.002 19.6 3.9 25 50-74 5-29 (74)
69 PRK14219 camphor resistance pr 32.0 1.1E+02 0.0023 21.9 4.4 28 45-72 96-123 (132)
70 PF06295 DUF1043: Protein of u 31.8 94 0.002 22.1 4.1 24 46-69 2-25 (128)
71 PF09605 Trep_Strep: Hypotheti 30.6 61 0.0013 24.6 3.1 26 45-70 156-181 (186)
72 PRK14413 membrane protein; Pro 29.6 1.2E+02 0.0027 23.3 4.7 56 49-104 6-74 (197)
73 TIGR00023 acyl-phosphate glyce 29.4 1.4E+02 0.0031 22.9 4.9 58 48-105 7-77 (196)
74 COG4064 MtrG Tetrahydromethano 29.3 99 0.0021 19.7 3.3 24 37-60 50-73 (75)
75 COG4035 Predicted membrane pro 29.0 1.3E+02 0.0029 20.3 4.1 81 48-138 15-103 (108)
76 PRK04125 murein hydrolase regu 28.9 2.3E+02 0.005 20.7 5.7 8 24-31 30-37 (141)
77 PRK14419 membrane protein; Pro 28.6 2E+02 0.0043 22.2 5.6 33 48-80 6-39 (199)
78 PF02417 Chromate_transp: Chro 28.4 2.4E+02 0.0053 20.7 8.9 60 8-67 35-96 (169)
79 PF12072 DUF3552: Domain of un 28.3 1.1E+02 0.0023 23.5 4.1 27 47-73 3-29 (201)
80 PLN02255 H(+) -translocating i 28.1 1.7E+02 0.0037 27.4 5.9 34 123-156 664-697 (765)
81 PRK14417 membrane protein; Pro 27.4 1.6E+02 0.0035 23.4 5.0 59 47-105 6-77 (232)
82 PRK14410 membrane protein; Pro 27.3 1.5E+02 0.0032 23.6 4.8 31 50-80 8-39 (235)
83 TIGR01104 V_PPase vacuolar-typ 27.3 1.7E+02 0.0037 27.1 5.7 33 124-156 602-634 (697)
84 PRK14399 membrane protein; Pro 27.0 1.3E+02 0.0029 24.2 4.6 35 46-80 11-46 (258)
85 COG0398 Uncharacterized conser 27.0 3.1E+02 0.0067 21.4 9.9 65 10-74 51-116 (223)
86 COG3037 SgaT Uncharacterized p 26.7 3.2E+02 0.007 24.1 7.0 67 28-96 153-236 (481)
87 PRK14418 membrane protein; Pro 26.3 1.5E+02 0.0033 23.6 4.7 32 47-78 11-43 (236)
88 PRK12996 ulaA PTS system ascor 26.2 3.4E+02 0.0074 23.9 7.1 44 28-71 145-205 (463)
89 PF06055 ExoD: Exopolysacchari 25.8 1.2E+02 0.0027 23.0 4.1 30 2-31 25-54 (187)
90 PRK14409 membrane protein; Pro 25.1 1.6E+02 0.0035 22.8 4.6 57 48-104 4-73 (205)
91 PF13974 YebO: YebO-like prote 24.8 2.1E+02 0.0046 18.8 4.9 22 49-70 3-24 (80)
92 COG5547 Small integral membran 24.7 1.8E+02 0.0038 17.9 6.0 28 39-67 25-52 (62)
93 PRK14392 membrane protein; Pro 24.6 1.8E+02 0.0039 22.6 4.8 56 49-104 6-74 (207)
94 PLN02277 H(+) -translocating i 24.2 3.8E+02 0.0082 25.1 7.3 34 123-156 645-678 (730)
95 PRK14403 membrane protein; Pro 24.1 1.9E+02 0.0041 22.3 4.8 55 51-105 8-75 (196)
96 PRK14472 F0F1 ATP synthase sub 23.8 1.7E+02 0.0036 21.8 4.4 16 33-48 6-21 (175)
97 COG5522 Predicted integral mem 23.7 3.7E+02 0.0079 21.2 6.3 61 6-71 119-180 (236)
98 PF11283 DUF3084: Protein of u 23.7 2.1E+02 0.0046 18.7 4.2 20 54-73 10-32 (79)
99 PF04186 FxsA: FxsA cytoplasmi 23.0 2.7E+02 0.0059 19.4 8.7 29 33-61 14-42 (119)
100 PRK14405 membrane protein; Pro 22.9 1.9E+02 0.0042 22.3 4.7 32 49-80 7-39 (202)
101 PF01102 Glycophorin_A: Glycop 22.9 1.7E+02 0.0036 20.8 3.9 9 59-67 83-91 (122)
102 PF01169 UPF0016: Uncharacteri 22.7 2.2E+02 0.0048 18.3 5.0 38 32-69 19-58 (78)
103 PRK14395 membrane protein; Pro 22.5 2.7E+02 0.0059 21.4 5.4 30 50-80 7-37 (195)
104 PRK14393 membrane protein; Pro 22.5 2.6E+02 0.0056 21.5 5.2 56 49-105 7-75 (194)
105 PF04892 VanZ: VanZ like famil 22.5 79 0.0017 21.9 2.3 18 51-68 109-126 (133)
106 PF12123 Amidase02_C: N-acetyl 22.5 65 0.0014 18.7 1.5 17 80-96 26-42 (45)
107 PRK03001 M48 family peptidase; 22.3 2E+02 0.0044 23.1 4.9 22 47-68 30-51 (283)
108 PF07290 DUF1449: Protein of u 22.3 3.7E+02 0.0081 20.8 6.1 27 53-80 100-126 (202)
109 PRK14415 membrane protein; Pro 22.3 1.6E+02 0.0035 23.0 4.1 32 49-80 9-41 (216)
110 PRK14231 camphor resistance pr 22.2 2E+02 0.0043 20.5 4.3 30 45-74 93-122 (129)
111 PRK01345 heat shock protein Ht 22.0 2.4E+02 0.0052 23.3 5.3 33 35-67 18-50 (317)
112 COG0201 SecY Preprotein transl 21.9 5.4E+02 0.012 22.5 13.2 27 124-150 151-177 (436)
113 TIGR03546 conserved hypothetic 21.5 1.8E+02 0.0039 21.5 4.1 37 51-89 110-146 (154)
114 PF06177 QueT: QueT transporte 21.5 3.3E+02 0.0072 20.0 5.5 19 120-138 119-137 (152)
115 COG3030 FxsA Protein affecting 21.3 3.5E+02 0.0077 20.1 8.9 37 33-73 19-55 (158)
116 TIGR00828 EIID-AGA PTS system, 20.5 4.7E+02 0.01 21.2 7.7 40 53-94 147-186 (271)
117 COG1177 PotC ABC-type spermidi 20.3 4.7E+02 0.01 21.1 9.2 96 42-137 70-177 (267)
118 PRK03982 heat shock protein Ht 20.2 3E+02 0.0065 22.2 5.5 17 52-68 36-52 (288)
119 PRK14397 membrane protein; Pro 20.1 2.4E+02 0.0053 22.2 4.7 56 50-105 7-75 (222)
120 TIGR02840 spore_YtaF putative 20.0 4.1E+02 0.0089 20.4 9.9 36 111-150 144-179 (206)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=196.97 Aligned_cols=145 Identities=32% Similarity=0.618 Sum_probs=138.4
Q ss_pred cchhhhhHHHHHHH-HHHHHHHHHhccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCc
Q 030381 2 LRCFDLVRFSMVIC-RAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 2 ~~~~~~~~~~~~~~-f~~~~i~~~~~~iP~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~ 80 (178)
.|+++++....+.+ |++.++....+++|++++.+++|.+||++.|.+++++|+++|+.++|+++|++||++.+++.+++
T Consensus 39 ~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~~~~~~~ 118 (223)
T COG0398 39 REWIQAYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGK 118 (223)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 36788888777777 88888889999999999999999999999999999999999999999999999999999988878
Q ss_pred hHHHHHHHHHhcchHHHHHHHHhcCCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhh
Q 030381 81 PQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 146 (178)
Q Consensus 81 ~~~~~~~~~~~k~g~~~v~i~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~ 146 (178)
++.+|.++.++|+|++.+++.|++|++|++++|+++|++++|+++|.+++.+|++|+++.|+++|+
T Consensus 119 ~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 119 EKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999997
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=186.14 Aligned_cols=149 Identities=19% Similarity=0.351 Sum_probs=137.1
Q ss_pred hhhhHHHHHHHHHHHHHHH---HhccccHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhh
Q 030381 5 FDLVRFSMVICRAVAYIPL---TILAVPASVLTLGGGYL-----FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISK 76 (178)
Q Consensus 5 ~~~~~~~~~~~f~~~~i~~---~~~~iP~~~l~~~~G~l-----~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~ 76 (178)
.++..+.+..+|...+.+. ..+|+|++++++++|++ .+.+..++.+++|+++||.++|++||+.|++..+++
T Consensus 10 ~~~~~~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~ 89 (208)
T COG0586 10 IQEGSLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKL 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhh
Confidence 4445799999999999998 88899999999999998 457899999999999999999999999999988876
Q ss_pred hc----CchHHHHHHHHHhcchHHHHHHHHhcCCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhcccc
Q 030381 77 LK----DYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLS 152 (178)
Q Consensus 77 ~~----~~~~~~~~~~~~~k~g~~~v~i~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~ 152 (178)
.+ ++++++|.+++++|||.+.++++|++|+++. ++++.||++|||+++|...+.+|.++|+.++++.|+.+++..
T Consensus 90 ~~~~~~~~~~l~~a~~~f~r~G~~~vf~~RFip~vRt-~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~ 168 (208)
T COG0586 90 WSYRLLKRKKLDKAELLFERHGLFAIFLGRFIPGVRT-LVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVI 168 (208)
T ss_pred hhhccCCHHHHHHHHHHHHHcCchhhhhhcccchhHh-hhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 55 4689999999999999999999999999886 599999999999999999999999999999999999999877
Q ss_pred cc
Q 030381 153 DV 154 (178)
Q Consensus 153 ~~ 154 (178)
+.
T Consensus 169 ~~ 170 (208)
T COG0586 169 DV 170 (208)
T ss_pred HH
Confidence 63
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.94 E-value=2.3e-25 Score=158.86 Aligned_cols=120 Identities=36% Similarity=0.686 Sum_probs=110.8
Q ss_pred ccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHH---HHHHHhcchHHHHHHHHhc
Q 030381 28 VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS---VALAIQRSGFKIVLLLRLV 104 (178)
Q Consensus 28 iP~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~---~~~~~~k~g~~~v~i~r~~ 104 (178)
+|++++++++|.++|++.+++++.+|+++|+.++|++||+.+++..+++..++++.++ .++.+||||.+.+++.|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999997667766655555454 9999999999999999999
Q ss_pred CCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhh
Q 030381 105 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTT 147 (178)
Q Consensus 105 P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~ 147 (178)
|++|.+++|+++|++|+|+++|+.++++|++||+.++++.|+.
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~~ 123 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGYL 123 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999973
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.92 E-value=4.7e-25 Score=172.49 Aligned_cols=141 Identities=16% Similarity=0.255 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHH---HhccccHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhh--
Q 030381 10 FSMVICRAVAYIPL---TILAVPASVLTLGGGYLFG-------LPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKL-- 77 (178)
Q Consensus 10 ~~~~~~f~~~~i~~---~~~~iP~~~l~~~~G~l~g-------~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~-- 77 (178)
|.+.++|+..+++. ..+++|++.+.+++|.+.+ ++..++++++|+++|+.++|++||+.|++..+++.
T Consensus 28 ~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~~~ 107 (219)
T PRK10847 28 WVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPNSK 107 (219)
T ss_pred HHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccccc
Confidence 45667889999986 4567999999999998743 56788999999999999999999999998876432
Q ss_pred -cCchHHHHHHHHHhcchHHHHHHHHhcCCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhccc
Q 030381 78 -KDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDL 151 (178)
Q Consensus 78 -~~~~~~~~~~~~~~k~g~~~v~i~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~ 151 (178)
.++++++|.+++++|||.+.++++|++|++|. ++++++|++|||+++|+..+.+|.++|+..++..|+.+++.
T Consensus 108 ~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R~-~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~~ 181 (219)
T PRK10847 108 IFRRSYLDKTHQFYEKHGGKTIILARFVPIVRT-FAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTL 181 (219)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeeCCccchHh-HHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23567999999999999999999999998885 59999999999999999999999999999999999998864
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=128.21 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhc-CchHH
Q 030381 6 DLVRFSMVICRAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK-DYPQF 83 (178)
Q Consensus 6 ~~~~~~~~~~f~~~~i~~~~~~iP~~~l~~~~G~l-~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~-~~~~~ 83 (178)
-.+..++..+|+..|++++++|+|+|++....-.. ..++...+++++|+++|+.++|++||..++...+++.. ++++.
T Consensus 13 ~~~~~a~~~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~ 92 (161)
T COG1238 13 MSQAYAYAGLFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEAL 92 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHH
Confidence 35779999999999999999999999865433333 78999999999999999999999999998876665443 25677
Q ss_pred HHHHH-HHhcchHHHHHHHHhcCCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhc
Q 030381 84 RSVAL-AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 149 (178)
Q Consensus 84 ~~~~~-~~~k~g~~~v~i~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~ 149 (178)
+|.++ +.+|+|.+.++++-+.| +| |+++.++|..|+|+++|+....+|+..+..+..++....+
T Consensus 93 ~~~~~~~~~ryg~~~ll~s~lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 93 EKLQEKWYRRYGVWTLLLSWLPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77776 89999999999999977 89 8999999999999999999999999999999998877654
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.67 E-value=4.6e-16 Score=124.37 Aligned_cols=156 Identities=28% Similarity=0.496 Sum_probs=135.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchH
Q 030381 4 CFDLVRFSMVICRAVAYIPLTILAVPAS-VLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQ 82 (178)
Q Consensus 4 ~~~~~~~~~~~~f~~~~i~~~~~~iP~~-~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~ 82 (178)
+.+++.......|.+.|...+.+.+|+. ...+.+|.++|.|.|.+.+...+.+|+++||.+++..+|+++.++++++.+
T Consensus 88 y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~ 167 (275)
T KOG3140|consen 88 YKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIA 167 (275)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence 4456677888899999999999999965 588999999999999999999999999999999999999999998876444
Q ss_pred HHHHHHHHhcch-HHHHHHHHhcCCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhccccccccCCc
Q 030381 83 FRSVALAIQRSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWN 159 (178)
Q Consensus 83 ~~~~~~~~~k~g-~~~v~i~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~~~~ 159 (178)
.-+.....+|++ ...+...|++|..|+.+.|+++++.++|.+.|+++++.|.+|.+.+.+-.|+.+++..+..+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~ 245 (275)
T KOG3140|consen 168 FLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFS 245 (275)
T ss_pred HHHHHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccC
Confidence 444444455566 66688999999999999999999999999999999999999999999999999988887666544
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.86 E-value=0.00036 Score=49.72 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHhhhcC-chHHHHHHHHHhcchHHHHHHHHhcCCCC---hhH
Q 030381 41 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPF-----VISKLKD-YPQFRSVALAIQRSGFKIVLLLRLVPLLP---FNM 111 (178)
Q Consensus 41 ~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~-----~~~~~~~-~~~~~~~~~~~~k~g~~~v~i~r~~P~~p---~~~ 111 (178)
.+++.+.+++.+|+++.....++.-++.-+-. .++..++ .++.+|-++..||+|++.+++.=.+| +| ...
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIP-lP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIP-LPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC-CCcchHHH
Confidence 56889999999999998888877776654321 1111111 24556677789999999888777777 55 455
Q ss_pred HHHHHhccCCChhHHHHHHHHhhHHHHH
Q 030381 112 LNYLLSVTPVPLLEYMLASWIGMMPITL 139 (178)
Q Consensus 112 ~~~~aG~~~~~~~~f~~~~~lg~~~~~~ 139 (178)
-+.++-+.+++.++=+.+..+|......
T Consensus 93 gal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 93 GALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999877653
No 8
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.74 E-value=0.91 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Q 030381 43 LPVGFVADSIGATIGAGAAFLLGRTIGKPF 72 (178)
Q Consensus 43 ~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~ 72 (178)
.|.+++...++...|-..+|+++|+.-++.
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~ 32 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQ 32 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777778888899999875443
No 9
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=88.58 E-value=2.8 Score=31.01 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHh---cccc--------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030381 8 VRFSMVICRAVAYIPLTI---LAVP--------ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (178)
Q Consensus 8 ~~~~~~~~f~~~~i~~~~---~~iP--------~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~ 61 (178)
.......++..+.+.... +|+| ++.....+|.++|+..|.++..+|..+++.+.
T Consensus 5 k~i~~~ai~~Al~~v~~~~~~Ip~p~~~g~i~~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 5 KKIVLIAILIALSIVLTFFFSIPIPITGGRIHLGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred HHHHHHHHHHHHHHHHHHheeeecCCCCCeeehhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 344445555555544333 3444 45688899999999999999999999999854
No 10
>PRK11677 hypothetical protein; Provisional
Probab=88.13 E-value=1.5 Score=31.73 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCh
Q 030381 47 FVADSIGATIGAGAAFLLGRTIGK 70 (178)
Q Consensus 47 ~~~~~~g~~lg~~~~y~lgr~~g~ 70 (178)
++++.+|.++|.+++|+++|...+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 466778889999999999998654
No 11
>PRK09609 hypothetical protein; Provisional
Probab=87.97 E-value=7.4 Score=32.14 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030381 32 VLTLGGGYLFGLPVGFVADSIGATIGAG 59 (178)
Q Consensus 32 ~l~~~~G~l~g~~~~~~~~~~g~~lg~~ 59 (178)
+....+|.++||+.|.++..+...+|..
T Consensus 45 IPviI~G~LFGPv~G~ivG~lsDLLs~l 72 (312)
T PRK09609 45 LPIKITGFIFGPIVGFFTGLLSDLISFL 72 (312)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 4577889999999888877777666644
No 12
>PRK00523 hypothetical protein; Provisional
Probab=86.41 E-value=4.3 Score=26.04 Aligned_cols=31 Identities=6% Similarity=0.037 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 030381 44 PVGFVADSIGATIGAGAAFLLGRTIGKPFVI 74 (178)
Q Consensus 44 ~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~ 74 (178)
+..+++..++..+|...+|+++|+.-++.++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788899999999999998655444
No 13
>PRK01844 hypothetical protein; Provisional
Probab=85.62 E-value=4.2 Score=26.12 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 030381 43 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 74 (178)
Q Consensus 43 ~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~ 74 (178)
.|..+++..++..+|..++|+++|+.-++.++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999998655444
No 14
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=82.07 E-value=4.6 Score=31.60 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHH
Q 030381 43 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 84 (178)
Q Consensus 43 ~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~ 84 (178)
.........+....||..+|..||++||+ ...+.+.+|.+|
T Consensus 128 ~~~~~~~~i~~~~~gD~~A~l~G~~fGk~-~~~~~sp~KT~E 168 (259)
T PF01148_consen 128 GPPLALIGILILGIGDSFAYLVGRRFGKH-LAPKISPKKTWE 168 (259)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCCCCCCCHH
Confidence 33445677788889999999999999987 333333344444
No 15
>COG2426 Predicted membrane protein [Function unknown]
Probab=79.94 E-value=20 Score=25.79 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=69.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHh----hhcC---------chHHHHHHHHHhcchHHHHHHHHhc
Q 030381 38 GYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS----KLKD---------YPQFRSVALAIQRSGFKIVLLLRLV 104 (178)
Q Consensus 38 G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~----~~~~---------~~~~~~~~~~~~k~g~~~v~i~r~~ 104 (178)
+.-++++.....+.+|...=+.+.+.+-+...+ +.+| ++++ ++..+|.+...||+|+.-+.+.--+
T Consensus 15 ~~G~~~~Eal~~silGvL~l~~lL~~~l~~id~-im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAI 93 (142)
T COG2426 15 ALGLSPLEALLLSILGVLPLSLLLPLLLDPIDR-IMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAI 93 (142)
T ss_pred HhCCCHHHHHHHHHHHHhhHHHHHHHHHhHHHH-HHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeec
Confidence 344678999999999977766666655554322 1111 1111 1222334445888999877776666
Q ss_pred CCCChh---HHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhh
Q 030381 105 PLLPFN---MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 146 (178)
Q Consensus 105 P~~p~~---~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~ 146 (178)
| .|.+ --++++-+.++|.++=+.+..+|......+.+..+.
T Consensus 94 P-LP~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s~ 137 (142)
T COG2426 94 P-LPGTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPSI 137 (142)
T ss_pred c-CCCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhcc
Confidence 7 6643 346677788899988888888888877777665544
No 16
>PRK13661 hypothetical protein; Provisional
Probab=79.84 E-value=12 Score=28.53 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030381 30 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (178)
Q Consensus 30 ~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~ 61 (178)
++......+.+||+..|.++..+|..+++.+.
T Consensus 40 ~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 40 AYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 46688899999999999999999999999863
No 17
>COG1238 Predicted membrane protein [Function unknown]
Probab=78.66 E-value=14 Score=27.62 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=53.5
Q ss_pred HHHHHhcchHHHHHHHHh-----cCCCChhHHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhcccccc
Q 030381 86 VALAIQRSGFKIVLLLRL-----VPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 154 (178)
Q Consensus 86 ~~~~~~k~g~~~v~i~r~-----~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~ 154 (178)
.+...++++...+++.-+ .| +|.++.-...-+.+.+.+.+...+.+|+....++--++|+...+..+.
T Consensus 10 ~~~~~~~~a~~~Lf~vaF~eat~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 10 LSLMSQAYAYAGLFIVAFLEATLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 344556677666665444 48 888877777777779999999999999999999999999998876654
No 18
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=76.81 E-value=1.9 Score=34.74 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhc
Q 030381 46 GFVADSIGATIGAGAAFLLGRTIGKPFVISKLK 78 (178)
Q Consensus 46 ~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~ 78 (178)
..+...++...+|+.+|+.||++|++.+..+.+
T Consensus 135 ~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iS 167 (265)
T COG0575 135 LLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKIS 167 (265)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCC
Confidence 356677888999999999999999875444333
No 19
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.70 E-value=32 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHhhh
Q 030381 14 ICRAVAYIPLTILAVPASVLTLGGGYLF 41 (178)
Q Consensus 14 ~~f~~~~i~~~~~~iP~~~l~~~~G~l~ 41 (178)
.+|.+-++....+.+|++.++.++-..+
T Consensus 11 al~lvg~vGlv~PaiPs~lli~~G~l~y 38 (160)
T COG2839 11 ALFLVGFVGLVYPAIPSTLLIFAGFLAY 38 (160)
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 5677777777778899888777664443
No 20
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=74.09 E-value=2.8 Score=34.17 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHH
Q 030381 47 FVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 84 (178)
Q Consensus 47 ~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~ 84 (178)
.+...+-.-.+|+.+|+.||++||+++-.+++.+|..|
T Consensus 154 vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwE 191 (285)
T PRK11624 154 LLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWE 191 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchh
Confidence 34444556788999999999999876655555445444
No 21
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.97 E-value=6.6 Score=28.03 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhChH
Q 030381 50 DSIGATIGAGAAFLLGRTIGKP 71 (178)
Q Consensus 50 ~~~g~~lg~~~~y~lgr~~g~~ 71 (178)
+.+|.++|.+++|+++|...++
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4677788888888888887654
No 22
>PRK10527 hypothetical protein; Provisional
Probab=73.54 E-value=15 Score=26.21 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHhccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcc
Q 030381 23 LTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRS 93 (178)
Q Consensus 23 ~~~~~iP~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~ 93 (178)
..++.+|++.+.+++.+.| +| +++..++++.+++.+...-+..+|+
T Consensus 21 i~LPlLPTTPFlLLAa~cf-----------------------aR--sSpR~~~WL~~h~~fGp~i~~w~~~ 66 (125)
T PRK10527 21 VVLPLLPTTPFILLAAWCF-----------------------AR--SSPRFHAWLLYRSWFGSYLRHWQQH 66 (125)
T ss_pred HhccCCCCcHHHHHHHHHH-----------------------Hc--CCHHHHHHHHcCchhhHHHHHHHHC
Confidence 3444578888877766554 23 3455667776666665544444443
No 23
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=72.72 E-value=12 Score=23.48 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhChHHHH
Q 030381 49 ADSIGATIGAGAAFLLGRTIGKPFVI 74 (178)
Q Consensus 49 ~~~~g~~lg~~~~y~lgr~~g~~~~~ 74 (178)
...++.++|..++|+++|+.-++-++
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~ 27 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLK 27 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999998655443
No 24
>PRK10847 hypothetical protein; Provisional
Probab=71.87 E-value=25 Score=27.31 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHhcchHHH---HHHHHh-------cCCCChhHHHHHHhcc------CCChhHHHHHHHHhhHHHHHHHHHHhhhh
Q 030381 85 SVALAIQRSGFKI---VLLLRL-------VPLLPFNMLNYLLSVT------PVPLLEYMLASWIGMMPITLALVYVGTTL 148 (178)
Q Consensus 85 ~~~~~~~k~g~~~---v~i~r~-------~P~~p~~~~~~~aG~~------~~~~~~f~~~~~lg~~~~~~~~~~~G~~~ 148 (178)
..++.++++|.+. +++.-+ .|++|.+.+...+|.. .+++..-+..+.+|...-..+.-++|+..
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777543 333322 4778988787777744 26677778888899999999999999877
Q ss_pred cc
Q 030381 149 KD 150 (178)
Q Consensus 149 ~~ 150 (178)
++
T Consensus 97 G~ 98 (219)
T PRK10847 97 GE 98 (219)
T ss_pred CH
Confidence 54
No 25
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.55 E-value=15 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh
Q 030381 45 VGFVADSIGATIGAGAAFLLGRTIGK 70 (178)
Q Consensus 45 ~~~~~~~~g~~lg~~~~y~lgr~~g~ 70 (178)
..+.++.+|.++|-+++|++.|..-+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 45667888999999999999987543
No 26
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.72 E-value=25 Score=21.64 Aligned_cols=11 Identities=0% Similarity=0.308 Sum_probs=5.9
Q ss_pred hHHHHHHHHHh
Q 030381 81 PQFRSVALAIQ 91 (178)
Q Consensus 81 ~~~~~~~~~~~ 91 (178)
++.++.++..+
T Consensus 55 k~l~~le~e~~ 65 (68)
T PF06305_consen 55 KELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 27
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.30 E-value=47 Score=23.24 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=7.9
Q ss_pred HHHHHHHHhcch
Q 030381 83 FRSVALAIQRSG 94 (178)
Q Consensus 83 ~~~~~~~~~k~g 94 (178)
+++++...++++
T Consensus 83 ~r~l~~~~~~~~ 94 (111)
T TIGR03750 83 YRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHcC
Confidence 566776666665
No 28
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=61.38 E-value=32 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030381 40 LFGLPVGFVADSIGATIGAGAAFLLGRTI 68 (178)
Q Consensus 40 l~g~~~~~~~~~~g~~lg~~~~y~lgr~~ 68 (178)
.+|+|..+++..+ ..+.|.+|++.
T Consensus 26 ~~GF~~tl~i~~~-----~~iG~~iG~~~ 49 (51)
T PF10031_consen 26 TFGFWKTLFILLF-----AAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 4566665554333 33456666664
No 29
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=60.91 E-value=3.6 Score=34.94 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhCh------H-HHH---hhhc-C----chHHHHHHHHH----hcchHHHHHHHHhcCCCChhHH
Q 030381 52 IGATIGAGAAFLLGRTIGK------P-FVI---SKLK-D----YPQFRSVALAI----QRSGFKIVLLLRLVPLLPFNML 112 (178)
Q Consensus 52 ~g~~lg~~~~y~lgr~~g~------~-~~~---~~~~-~----~~~~~~~~~~~----~k~g~~~v~i~r~~P~~p~~~~ 112 (178)
.|..+|..-.|+..|..-- + ... .-.+ + .++.+|.+.+. +|-|+..+.+.--+|---+|+.
T Consensus 217 ~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfdla 296 (440)
T KOG1109|consen 217 AGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFDLA 296 (440)
T ss_pred cccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchhhc
Confidence 5778899999999987421 1 000 0000 0 12334444444 4457777777777775557888
Q ss_pred HHHHhccCCChhHHHHHHHHhhHHHH
Q 030381 113 NYLLSVTPVPLLEYMLASWIGMMPIT 138 (178)
Q Consensus 113 ~~~aG~~~~~~~~f~~~~~lg~~~~~ 138 (178)
-..+|....|++.|+.+|++|+..-.
T Consensus 297 Gitcghflvpfw~ffGaTLigKaiik 322 (440)
T KOG1109|consen 297 GITCGHFLVPFWTFFGATLIGKAIIK 322 (440)
T ss_pred ccccccccchHHHHhhHHHHHHHHHH
Confidence 88889999999999999999987654
No 30
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=59.89 E-value=70 Score=23.82 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030381 30 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (178)
Q Consensus 30 ~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~ 61 (178)
+++..+.+|.++|||.+...+.+++.+++...
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 56788999999999999999999998887753
No 31
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=59.08 E-value=62 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=7.6
Q ss_pred HHHHHHHHhcch
Q 030381 83 FRSVALAIQRSG 94 (178)
Q Consensus 83 ~~~~~~~~~k~g 94 (178)
+++++..+++++
T Consensus 86 ~r~l~~~l~~~g 97 (121)
T PF11990_consen 86 YRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHhc
Confidence 456666666665
No 32
>PF14163 SieB: Superinfection exclusion protein B
Probab=55.42 E-value=77 Score=22.94 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHHhccccHHHHHHHHH----hhhhhHHHHHHHH-HHHHHHHHHHHH
Q 030381 21 IPLTILAVPASVLTLGGG----YLFGLPVGFVADS-IGATIGAGAAFL 63 (178)
Q Consensus 21 i~~~~~~iP~~~l~~~~G----~l~g~~~~~~~~~-~g~~lg~~~~y~ 63 (178)
....+++.|.+.+....- ..+++|.+..... ++-.+...+.+.
T Consensus 8 ~~~~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~~~~~~ 55 (151)
T PF14163_consen 8 FSGLLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQLLSFI 55 (151)
T ss_pred HHHHHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334455688777654332 2466777766544 344444444433
No 33
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=55.02 E-value=58 Score=23.94 Aligned_cols=25 Identities=28% Similarity=0.479 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHH
Q 030381 48 VADSIGATIGAGAAFLLGRTIGKPF 72 (178)
Q Consensus 48 ~~~~~g~~lg~~~~y~lgr~~g~~~ 72 (178)
..+.++.++|...+|++.|++.|+.
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRkl 128 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRKL 128 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999986543
No 34
>COG4732 Predicted membrane protein [Function unknown]
Probab=54.18 E-value=38 Score=25.13 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhccc--------cH-HHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030381 6 DLVRFSMVICRAVAYIPLTILAV--------PA-SVLTLGGGYLFGLPVGFVADSIGATI 56 (178)
Q Consensus 6 ~~~~~~~~~~f~~~~i~~~~~~i--------P~-~~l~~~~G~l~g~~~~~~~~~~g~~l 56 (178)
..++.....++..+-+....+-+ |. ..+...+|...|+|++...+.+.+.+
T Consensus 7 ~~rklaila~liaL~vvLs~iif~vgptkaaP~qh~VNvlAgV~~GPwyala~A~~~sli 66 (177)
T COG4732 7 QVRKLAILAMLIALDVVLSIIIFPVGPTKAAPMQHFVNVLAGVMMGPWYALAMALVTSLI 66 (177)
T ss_pred hHHHHHHHHHHHHHHHhheeeeEecCccccCcHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 45567777777776666553333 42 45889999999999998887766544
No 35
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=51.11 E-value=23 Score=25.89 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 030381 30 ASVLTLGGGYLFGLPVGFVADSIGATIGAGA 60 (178)
Q Consensus 30 ~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~ 60 (178)
..+..+.+|.++|++.|.+...+.+.++...
T Consensus 31 ~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 31 SFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788999999999999888877766555
No 36
>PRK11677 hypothetical protein; Provisional
Probab=48.21 E-value=46 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030381 43 LPVGFVADSIGATIGAGAAFLLGRTI 68 (178)
Q Consensus 43 ~~~~~~~~~~g~~lg~~~~y~lgr~~ 68 (178)
|..+++...+|.++|..+..+..+..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 44566677888888888888877665
No 37
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=46.82 E-value=55 Score=20.03 Aligned_cols=14 Identities=0% Similarity=0.147 Sum_probs=9.4
Q ss_pred chHHHHHHHHHhcc
Q 030381 80 YPQFRSVALAIQRS 93 (178)
Q Consensus 80 ~~~~~~~~~~~~k~ 93 (178)
+++++|+-+.+||+
T Consensus 45 eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 45 EQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHccC
Confidence 35677777777764
No 38
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=45.87 E-value=1.2e+02 Score=27.41 Aligned_cols=102 Identities=12% Similarity=0.182 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--------hCh--HHHHhhhc---------CchHHHHHHHHHhcchHHHHHHHHhcCCCCh
Q 030381 49 ADSIGATIGAGAAFLLGRT--------IGK--PFVISKLK---------DYPQFRSVALAIQRSGFKIVLLLRLVPLLPF 109 (178)
Q Consensus 49 ~~~~g~~lg~~~~y~lgr~--------~g~--~~~~~~~~---------~~~~~~~~~~~~~k~g~~~v~i~r~~P~~p~ 109 (178)
.+..|.++|..+.|+++-. .++ +.+||.++ .++++.|..+...|...+-..+--++|.+--
T Consensus 522 ~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T~aAl~eMi~P~llavl~P 601 (703)
T COG3808 522 YVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVDILTKAALKEMIIPGLLAVLAP 601 (703)
T ss_pred HHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4556677777777765433 221 11222222 1356777777777765555544444442222
Q ss_pred hHHHHHHhccCCChhHHHHHHHHhhHHHHHHH----HHHhhhhcccccccc
Q 030381 110 NMLNYLLSVTPVPLLEYMLASWIGMMPITLAL----VYVGTTLKDLSDVTH 156 (178)
Q Consensus 110 ~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~----~~~G~~~~~~~~~~~ 156 (178)
-++-+.+| +..+-+..+|.+..-+.. ...|-...|..+..|
T Consensus 602 lvvgli~G------~~aLgg~L~G~iv~G~~~Ai~m~n~GGAWDNAKK~iE 646 (703)
T COG3808 602 LVVGLILG------FAALGGLLLGVIVNGLFVAISMANGGGAWDNAKKYIE 646 (703)
T ss_pred HHHHHHhh------HHHHHHHHHHHHHHhHHHHHhhccCCCcchhhhhhhh
Confidence 22334444 666666666665544433 333555555554333
No 39
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=45.60 E-value=1.8e+02 Score=24.21 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhc-CchHHHHHHHHHhcchHHHHHHHHhcC----CCChhHHHHHH
Q 030381 42 GLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK-DYPQFRSVALAIQRSGFKIVLLLRLVP----LLPFNMLNYLL 116 (178)
Q Consensus 42 g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~-~~~~~~~~~~~~~k~g~~~v~i~r~~P----~~p~~~~~~~a 116 (178)
..|.|+...++=++.+-.+-+.+|++-- ++++ ++....+-.+.+||+=.+++.+=-.+| +.|.. ++.-.
T Consensus 196 rSW~gi~~~T~iS~~Si~~y~vlg~~I~-----~kL~~~~~~mS~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~-~~wy~ 269 (310)
T PF10319_consen 196 RSWIGIIILTIISSYSIILYFVLGYKIM-----KKLNKMSSTMSKKTKRLQRQLFKALIVQTVIPICVSFSPCV-LSWYG 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhchhhhCHhHHHHHHHHHHHHHHHHHhHHHHhhccHH-HHHhH
Confidence 3677777777777776666667777743 2332 223333444455666555554433333 34553 55666
Q ss_pred hccCCCh---hHHHHHHHHhhHH
Q 030381 117 SVTPVPL---LEYMLASWIGMMP 136 (178)
Q Consensus 117 G~~~~~~---~~f~~~~~lg~~~ 136 (178)
.+.++++ ..+.-+.+++..|
T Consensus 270 pif~i~~~~~~n~~~~iAls~FP 292 (310)
T PF10319_consen 270 PIFGIDLGRWNNYFSVIALSAFP 292 (310)
T ss_pred HHHcCChhHHHHHHHHHHHHHcc
Confidence 6666554 4445555555544
No 40
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=44.69 E-value=1e+02 Score=21.79 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 030381 47 FVADSIGATIGAGAAFLLGRTIGKP 71 (178)
Q Consensus 47 ~~~~~~g~~lg~~~~y~lgr~~g~~ 71 (178)
-..+.+++..|-.+.|++.|++.++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888888899999987654
No 41
>PLN02953 phosphatidate cytidylyltransferase
Probab=44.55 E-value=15 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHH
Q 030381 47 FVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQF 83 (178)
Q Consensus 47 ~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~ 83 (178)
+++..+.....++..|+.||.+||+.+. .++.+|.+
T Consensus 271 ~l~~~~~vw~~Di~AY~~G~~fGk~kl~-~ISPkKTw 306 (403)
T PLN02953 271 TLISFSGVIATDTFAFLGGKAFGRTPLT-SISPKKTW 306 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC-cCCCCCee
Confidence 3456667788899999999999987654 34433433
No 42
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=43.89 E-value=2e+02 Score=24.37 Aligned_cols=58 Identities=16% Similarity=-0.021 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 030381 6 DLVRFSMVICRAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFL 63 (178)
Q Consensus 6 ~~~~~~~~~~f~~~~i~~~~~~iP~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~ 63 (178)
|+++|.---=|.-.+..++..|=|........|+..+-+.|.+++++|..+=+.+.-+
T Consensus 234 ~~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~ 291 (368)
T TIGR00937 234 DRGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVL 291 (368)
T ss_pred hccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 3344544455666667777766665557778888888899999999999887665433
No 43
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.54 E-value=1.3e+02 Score=22.58 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHhh-----hcC-----chHHHHHHHHHhcchHHHHHHHHhc
Q 030381 49 ADSIGATIGAGAAFLLGRTI-GKPFVISK-----LKD-----YPQFRSVALAIQRSGFKIVLLLRLV 104 (178)
Q Consensus 49 ~~~~g~~lg~~~~y~lgr~~-g~~~~~~~-----~~~-----~~~~~~~~~~~~k~g~~~v~i~r~~ 104 (178)
.+.+|.++|..++-.+-+++ .+++..+- +|+ +++++++++..+++...++.+.||-
T Consensus 51 ~NllGVil~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~FY 117 (165)
T PF11286_consen 51 WNLLGVILGLLLTSALLRQLKTHPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRFY 117 (165)
T ss_pred eeHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666666666655655 34444321 121 3567778888888888888888774
No 44
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=42.75 E-value=60 Score=23.90 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Q 030381 48 VADSIGATIGAGAAFLLGRTIGKP 71 (178)
Q Consensus 48 ~~~~~g~~lg~~~~y~lgr~~g~~ 71 (178)
..+.++..+|-.++|++.|+..++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888889998887654
No 45
>PLN02594 phosphatidate cytidylyltransferase
Probab=42.29 E-value=47 Score=27.91 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHH
Q 030381 48 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 84 (178)
Q Consensus 48 ~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~ 84 (178)
+....-....++.+|+.||.+||+.+- +++.+|.+|
T Consensus 128 ~l~~~lV~~nDi~AY~~G~~fGk~kL~-~iSPkKTwE 163 (342)
T PLN02594 128 LLPASLIVINDIAAYLFGFFFGRTPLI-KLSPKKTWE 163 (342)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCC-ccCCCCchh
Confidence 334445678899999999999987654 444344444
No 46
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.08 E-value=93 Score=22.02 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=12.7
Q ss_pred HHHHhhhcCchHHHHHHHHHhcc
Q 030381 71 PFVISKLKDYPQFRSVALAIQRS 93 (178)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~k~ 93 (178)
+..++++-+++.+.+..+..+|+
T Consensus 44 pRf~~WLl~~~~fg~~v~~~~e~ 66 (119)
T COG2832 44 PRFHAWLLRHKYFGPYVRDWREG 66 (119)
T ss_pred cHHHHHHHcCchhhHHHHHHHHc
Confidence 44566666566666554444444
No 47
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=41.42 E-value=1.8e+02 Score=23.54 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=52.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcchHHHHHHHHhcCC---CChhHHHHHH
Q 030381 40 LFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPL---LPFNMLNYLL 116 (178)
Q Consensus 40 l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~g~~~v~i~r~~P~---~p~~~~~~~a 116 (178)
..|+..-+++..+-...-....+..|++.|++.+++. + ....+|+.+...-=|...+ +-+++- +.. ...+..
T Consensus 132 ~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~-~~~~~~i~~~asilGl~vv--Gal~as~V~v~~-~l~~~~ 206 (264)
T PF03613_consen 132 ILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-Q-SGLLQKITEAASILGLMVV--GALIASYVNVST-PLTITI 206 (264)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHH--HHHHHHeEEEee-eEEEec
Confidence 3455554444444555666777888999999888876 4 4566666665554443322 222220 111 122344
Q ss_pred hccCCChhHHHHHHHHhhHHHHHH
Q 030381 117 SVTPVPLLEYMLASWIGMMPITLA 140 (178)
Q Consensus 117 G~~~~~~~~f~~~~~lg~~~~~~~ 140 (178)
|-..++....+=..+.+.+|-.+.
T Consensus 207 g~~~~~lQ~~lD~I~P~lLpl~~~ 230 (264)
T PF03613_consen 207 GGVTISLQEILDGIMPGLLPLLLT 230 (264)
T ss_pred CCceeeHHHhHHhHHhhHHHHHHH
Confidence 555567777555555555554443
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=41.34 E-value=1.2e+02 Score=25.83 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHH
Q 030381 8 VRFSMVICRAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVA 87 (178)
Q Consensus 8 ~~~~~~~~f~~~~i~~~~~~iP~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~ 87 (178)
+...+.......-+....+.+|... | ..|+....++..++-...|..+|.+-|-.+.++.++++-.+-.+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~a-----g-----~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~ 73 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQA-----G-----LGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVE 73 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-----H-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 3344444445555555666677641 1 11333444444444555566666554433333322334455667
Q ss_pred HHHhcchHHHHHHHHhc
Q 030381 88 LAIQRSGFKIVLLLRLV 104 (178)
Q Consensus 88 ~~~~k~g~~~v~i~r~~ 104 (178)
+.+.|.+-+.+-+..+.
T Consensus 74 ~~fGk~~G~ii~~lY~~ 90 (397)
T TIGR00814 74 EHFGKNWGILITLLYFF 90 (397)
T ss_pred HHcCHHHHHHHHHHHHH
Confidence 77777765554444444
No 49
>PRK11469 hypothetical protein; Provisional
Probab=39.82 E-value=1.7e+02 Score=22.28 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=22.2
Q ss_pred HHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 030381 112 LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 150 (178)
Q Consensus 112 ~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~ 150 (178)
+-+.++..+.|.........+-+..-+..=.++|+.+++
T Consensus 122 vGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~ 160 (188)
T PRK11469 122 VGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS 160 (188)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777776655555555555555555555654443
No 50
>PRK14400 membrane protein; Provisional
Probab=38.94 E-value=89 Score=24.20 Aligned_cols=59 Identities=22% Similarity=0.100 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHhc------------chHHHHHHHHhc
Q 030381 46 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLV 104 (178)
Q Consensus 46 ~~~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k------------~g~~~v~i~r~~ 104 (178)
+.++..++-.+||. .+|+++|...+..+++.-++|.=..+.-|...| +|...+.+.+..
T Consensus 7 ~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~GaTNv~R~~G~~~g~~v~l~D~lKG~l~v~la~~~ 78 (201)
T PRK14400 7 GAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIGATNVARAGGKKLGVLVLLLDAAKAIVPILVARRL 78 (201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777776 789999986444455544444322222222222 466666666554
No 51
>COG4720 Predicted membrane protein [Function unknown]
Probab=38.87 E-value=73 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 030381 31 SVLTLGGGYLFGLPVGFVADSIGATIGAGAAF 62 (178)
Q Consensus 31 ~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y 62 (178)
+....++.++||+-.|.++..+|..+-|.+++
T Consensus 41 da~i~las~lfGs~~G~lvg~iG~al~Dll~g 72 (177)
T COG4720 41 DAGIALASFLFGSRAGALVGGLGHALKDLLSG 72 (177)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHhcC
Confidence 45677888899999999999999999888874
No 52
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=38.32 E-value=48 Score=25.82 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHH
Q 030381 44 PVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 84 (178)
Q Consensus 44 ~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~ 84 (178)
.....++.+....||.++=.+||+.||. ++..+++|.++
T Consensus 113 ~~~~~~~I~~l~~GD~lAsiiG~~~G~~--~~~~~~~KSle 151 (216)
T COG0170 113 IEVAIAGILVLALGDGLASIIGKRYGRH--KRILGNGKSLE 151 (216)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCcccCcc--ccccCCCCchh
Confidence 3666777788888999999999999986 33444445554
No 53
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=37.17 E-value=93 Score=23.97 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHhcchH-HHHHHHHhcCCCChhHHHHHH--hccCCChhHHHHHHHHhhHHHHHHHHHHhhhhccccc
Q 030381 88 LAIQRSGF-KIVLLLRLVPLLPFNMLNYLL--SVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSD 153 (178)
Q Consensus 88 ~~~~k~g~-~~v~i~r~~P~~p~~~~~~~a--G~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~ 153 (178)
+|+++.++ ..+.+++++| -|.. .+++. |.-.-.+.--+.+......|..++...+.....+..+
T Consensus 41 ~Wis~~ef~~~laisq~lP-GP~a-~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~ 107 (195)
T COG2059 41 KWISEEEFADALAISQLLP-GPIA-TQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGD 107 (195)
T ss_pred cCCCHHHHHHHHHHHhcCC-CHHH-HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45555554 4566899999 6764 55443 5555566666777777788888888877776665544
No 54
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=37.01 E-value=1.7e+02 Score=21.58 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhccc
Q 030381 123 LLEYMLASWIGMMPITLALVYVGTTLKDL 151 (178)
Q Consensus 123 ~~~f~~~~~lg~~~~~~~~~~~G~~~~~~ 151 (178)
...+..+..++...|...+...+....+.
T Consensus 135 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 163 (191)
T PF01810_consen 135 FLVFILGIFLGSLLWFLLLALLGSRLRRK 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999888876643
No 55
>PRK14407 membrane protein; Provisional
Probab=36.67 E-value=72 Score=25.05 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 45 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 45 ~~~~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
.+.+...++-.+||. .+|+++|...+..+|+.-++|
T Consensus 6 ~~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~GSGN 42 (219)
T PRK14407 6 AGAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKS 42 (219)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhCCCCCCcCCCCC
Confidence 344555567777875 789999986443345443333
No 56
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=35.79 E-value=1.3e+02 Score=21.04 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcc
Q 030381 48 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRS 93 (178)
Q Consensus 48 ~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~ 93 (178)
..+.+-+.+|+.+...+--.+-++ +.+++++.+..++..++.+|+
T Consensus 17 ~~~~~~~~lGN~l~vp~i~~~~~~-i~~~l~~~~~~~~~~~~~~~k 61 (121)
T PF06695_consen 17 WEAFLLAFLGNILPVPFILLFLDK-ILKWLKRKPWLKKFYEWLEKK 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 456666778887766555555433 455555555555555544443
No 57
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=35.75 E-value=99 Score=28.57 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=39.8
Q ss_pred chHHHHHHHHHhcchHHHHHHHHhcCCCChhHHHHHHhc-cC-CChhHHHHHHHHhhHHHHHHHHHHhhhhcccccccc
Q 030381 80 YPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSV-TP-VPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 156 (178)
Q Consensus 80 ~~~~~~~~~~~~k~g~~~v~i~r~~P~~p~~~~~~~aG~-~~-~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 156 (178)
+++++|.-+-..|...+-...--+++ .+.+++.|. .+ --.--++....+..+..++...-.|....|.++.-|
T Consensus 560 ~pdy~~cV~I~T~~alkemi~P~ll~----v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE 634 (682)
T PF03030_consen 560 KPDYARCVDISTRAALKEMILPGLLA----VLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIE 634 (682)
T ss_dssp ---HHHHHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 35666665555554444333322222 123333333 22 223557777777788888888888998888777433
No 58
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=35.36 E-value=1.6e+02 Score=27.20 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhcccccccc
Q 030381 123 LLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 156 (178)
Q Consensus 123 ~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 156 (178)
.--++....+..+..++...-.|-...|..+..|
T Consensus 576 l~G~L~G~~vsG~~lAi~m~NaGGAWDNAKKyIE 609 (666)
T PRK00733 576 LGGLLAGAIVTGLLLAIFMANAGGAWDNAKKYIE 609 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4556666666677777777777877777666433
No 59
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=34.98 E-value=2.3e+02 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=12.8
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHhccC
Q 030381 94 GFKIVLLLRLVPLLPFNMLNYLLSVTP 120 (178)
Q Consensus 94 g~~~v~i~r~~P~~p~~~~~~~aG~~~ 120 (178)
++....+..+.-.. ..+-++-.|+++
T Consensus 98 ~fVta~lLfcig~m-~I~G~l~~GltG 123 (228)
T COG1811 98 GFVTAILLFCIGSM-GILGSLNEGLTG 123 (228)
T ss_pred HHHHHHHHHHhccc-chhhHHHHhhcC
Confidence 44444444444312 234566667766
No 60
>COG4732 Predicted membrane protein [Function unknown]
Probab=34.87 E-value=70 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhChHH
Q 030381 53 GATIGAGAAFLLGRTIGKPF 72 (178)
Q Consensus 53 g~~lg~~~~y~lgr~~g~~~ 72 (178)
++.+|+.++|+.-+.+-|+-
T Consensus 143 sTliGt~isf~alvaL~k~g 162 (177)
T COG4732 143 STLIGTIISFFALVALIKQG 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34677777777766664433
No 61
>PRK03072 heat shock protein HtpX; Provisional
Probab=34.74 E-value=1.3e+02 Score=24.49 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 030381 35 LGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIG 69 (178)
Q Consensus 35 ~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g 69 (178)
.+.|+++| ..+++.+.+-......++|+.+.+.-
T Consensus 22 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~ 55 (288)
T PRK03072 22 VFIGALFG-RTGLGIAVLIAVGMNAYVYWNSDKLA 55 (288)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455554 33444444445555667777666643
No 62
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=34.29 E-value=1.5e+02 Score=20.25 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030381 42 GLPVGFVADSIGATIGAGAAFLLGRTI 68 (178)
Q Consensus 42 g~~~~~~~~~~g~~lg~~~~y~lgr~~ 68 (178)
++|.+.+++.....+.+.+.++.+++-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777776666666666666655553
No 63
>PRK04897 heat shock protein HtpX; Provisional
Probab=33.91 E-value=2.5e+02 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 030381 44 PVGFVADSIGATIGAGAAFLLGRTIG 69 (178)
Q Consensus 44 ~~~~~~~~~g~~lg~~~~y~lgr~~g 69 (178)
..+.+++.+.....+.+.|+.+.+.-
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (298)
T PRK04897 40 LGGLIIALIIGVIYALIMIFQSTNVV 65 (298)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34555555666666777777776653
No 64
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=33.83 E-value=62 Score=28.30 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 030381 31 SVLTLGGGYLFGLPVGFVADSIGATIG 57 (178)
Q Consensus 31 ~~l~~~~G~l~g~~~~~~~~~~g~~lg 57 (178)
.+-...+|++|||+.|.+...++..+|
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 346678999999999999999999888
No 65
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=33.59 E-value=1.3e+02 Score=23.08 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=32.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHh------------cchHHHHHHHHhcC
Q 030381 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQ------------RSGFKIVLLLRLVP 105 (178)
Q Consensus 49 ~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~------------k~g~~~v~i~r~~P 105 (178)
...++-.+||. .+|+++|..++..+++.=++|.=..+.-|... -+|...+.+.+..+
T Consensus 8 ~~i~~YLlGsip~~~ii~k~~~~~DiR~~GSgN~GatNv~R~~G~~~gilvll~D~lKG~l~v~la~~~~ 77 (198)
T PRK00220 8 LILLAYLLGSIPFALLVGKLFGLPDPREHGSGNPGATNVLRIGGKKAAIATLLGDALKGTLAVLLAYLFG 77 (198)
T ss_pred HHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCCccHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556777776 78999998755445555444432222222222 24666777777654
No 66
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=33.39 E-value=2.8e+02 Score=23.43 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=21.8
Q ss_pred hccccHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 030381 25 ILAVPASVLTLG-GGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKP 71 (178)
Q Consensus 25 ~~~iP~~~l~~~-~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~ 71 (178)
++.+||..+.+. ...+++. ....... ..+-.-.|++-|.+|-+
T Consensus 162 ~lGvPG~~lLiy~i~~l~~~-~~~a~~~---i~~~iG~yll~kGfgld 205 (344)
T PF04123_consen 162 FLGVPGLILLIYAILALLGY-PAYALGI---ILLLIGLYLLYKGFGLD 205 (344)
T ss_pred eecchHHHHHHHHHHHHHcc-hHHHHHH---HHHHHHHHHHHHhcCcH
Confidence 334786554332 2223444 3333333 33444478888998843
No 67
>PRK14402 membrane protein; Provisional
Probab=32.95 E-value=1.6e+02 Score=22.66 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHH-----------h-cchHHHHHHHHhcC
Q 030381 45 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAI-----------Q-RSGFKIVLLLRLVP 105 (178)
Q Consensus 45 ~~~~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~-----------~-k~g~~~v~i~r~~P 105 (178)
...+...++-.+||. .+|+++|..+.| +++.-++|.=....-|.. | -+|...+.+.+..+
T Consensus 4 ~~~l~~~~~YllGsip~~~~v~k~~g~D-iR~~GSgN~GatNv~R~~G~~~g~~v~l~D~lKG~l~v~l~~~~~ 76 (198)
T PRK14402 4 TAVLALLLAYLFGSIPAGAWVARTRGVD-IRKVGSGNSGATNVLRSLGKGPALVVAFFDVLKGGIAVLLARALG 76 (198)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCC-hhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555667777776 788999975554 454434332222222221 2 25677777777765
No 68
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=32.94 E-value=94 Score=19.56 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhChHHHH
Q 030381 50 DSIGATIGAGAAFLLGRTIGKPFVI 74 (178)
Q Consensus 50 ~~~g~~lg~~~~y~lgr~~g~~~~~ 74 (178)
..+|..+|..+++++.-.-|++..+
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~e~R~ 29 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGKETRE 29 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 4578888899999988888876433
No 69
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=32.00 E-value=1.1e+02 Score=21.91 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHH
Q 030381 45 VGFVADSIGATIGAGAAFLLGRTIGKPF 72 (178)
Q Consensus 45 ~~~~~~~~g~~lg~~~~y~lgr~~g~~~ 72 (178)
.-.......+.+++.+.-++|.+.+|..
T Consensus 96 ~~a~~y~~~sl~~gl~a~~lG~~l~~~~ 123 (132)
T PRK14219 96 SIAFLYVSCSILGGLIMSGLGYTLGDFL 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666665543
No 70
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.85 E-value=94 Score=22.05 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 030381 46 GFVADSIGATIGAGAAFLLGRTIG 69 (178)
Q Consensus 46 ~~~~~~~g~~lg~~~~y~lgr~~g 69 (178)
+++...+|.++|-.+..+..+...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~ 25 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQ 25 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchh
Confidence 345566777788887777776654
No 71
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=30.59 E-value=61 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh
Q 030381 45 VGFVADSIGATIGAGAAFLLGRTIGK 70 (178)
Q Consensus 45 ~~~~~~~~g~~lg~~~~y~lgr~~g~ 70 (178)
+..+...+.+.+++.++-++||+.-|
T Consensus 156 ~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 156 WMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777888887777777643
No 72
>PRK14413 membrane protein; Provisional
Probab=29.63 E-value=1.2e+02 Score=23.28 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHhc------------chHHHHHHHHhc
Q 030381 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLV 104 (178)
Q Consensus 49 ~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k------------~g~~~v~i~r~~ 104 (178)
...+|-.+||. .+|+++|...+..+++.-++|.=.....|...+ +|...+.+.+..
T Consensus 6 ~~l~~Yl~Gsip~~~ii~k~~~g~DiR~~GSgN~GaTNv~R~~G~~~g~lvll~D~lKg~l~v~l~~~~ 74 (197)
T PRK14413 6 TSVISFLLGSIPTGYFITKKLCGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLKGIIPVVLGISL 74 (197)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677775 789999986444455544444322222222222 466666666665
No 73
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=29.41 E-value=1.4e+02 Score=22.93 Aligned_cols=58 Identities=22% Similarity=0.185 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHh------------cchHHHHHHHHhcC
Q 030381 48 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQ------------RSGFKIVLLLRLVP 105 (178)
Q Consensus 48 ~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~------------k~g~~~v~i~r~~P 105 (178)
+...+|-.+||. .+|+++|...+..+++.-++|.=....-|..- -+|...+.+.|...
T Consensus 7 l~~~~~YLlGSip~~~~i~k~~~g~DiR~~GSgN~GatNv~R~~G~k~gi~vll~D~lKG~lav~l~~~~~ 77 (196)
T TIGR00023 7 FLLLIGYLIGSIPFAYLVGKILKGIDIREHGSGNPGATNVLRTLGVKAALLVLIFDILKGMLAVALSFLLG 77 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCchhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344456667775 68999998754445554443322222222222 24666777777663
No 74
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=29.35 E-value=99 Score=19.72 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH
Q 030381 37 GGYLFGLPVGFVADSIGATIGAGA 60 (178)
Q Consensus 37 ~G~l~g~~~~~~~~~~g~~lg~~~ 60 (178)
.|.++|...|++++++-..+++.+
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888877777643
No 75
>COG4035 Predicted membrane protein [Function unknown]
Probab=28.97 E-value=1.3e+02 Score=20.31 Aligned_cols=81 Identities=26% Similarity=0.503 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcchHHHHHHH--HhcCCCChh-----HHHHHHhccC
Q 030381 48 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLL--RLVPLLPFN-----MLNYLLSVTP 120 (178)
Q Consensus 48 ~~~~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~g~~~v~i~--r~~P~~p~~-----~~~~~aG~~~ 120 (178)
.+-.+|+++|--.+| |+..+++.+|++ |+..-.+.--|+..+.-+ |-.| .|.. .+.+++|+-.
T Consensus 15 ~~Fi~Gs~iGLeySY---RkY~epfve~~i------Dp~aL~iaV~GwtiL~ns~~~~v~-~~~~~ag~flig~v~gMRP 84 (108)
T COG4035 15 ILFIIGSFIGLEYSY---RKYSEPFVEKGI------DPFALAIAVFGWTILINSWMRSVP-VPLYMAGCFLIGFVLGMRP 84 (108)
T ss_pred HHHHHHHHHHHhhhH---hhccchHhhcCC------ChHHHHHHHhcceeeeeecccCCc-hHHHHHHHHHHHHhhccCC
Confidence 334566666665555 555555554433 233333444444333333 3333 2211 1222333221
Q ss_pred -CChhHHHHHHHHhhHHHH
Q 030381 121 -VPLLEYMLASWIGMMPIT 138 (178)
Q Consensus 121 -~~~~~f~~~~~lg~~~~~ 138 (178)
.....+..+++++...|.
T Consensus 85 GYGR~Etv~Gt~LA~l~wL 103 (108)
T COG4035 85 GYGRVETVVGTFLAVLLWL 103 (108)
T ss_pred CCceeehhHHHHHHHHHHH
Confidence 334556666666666654
No 76
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=28.91 E-value=2.3e+02 Score=20.65 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.1
Q ss_pred HhccccHH
Q 030381 24 TILAVPAS 31 (178)
Q Consensus 24 ~~~~iP~~ 31 (178)
.-+|+|++
T Consensus 30 l~lPiPGs 37 (141)
T PRK04125 30 LPIPMPAS 37 (141)
T ss_pred cCCCCcHH
Confidence 33444433
No 77
>PRK14419 membrane protein; Provisional
Probab=28.61 E-value=2e+02 Score=22.16 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 48 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 48 ~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
+...++-.+|+. .+|+++|...+..+++.-++|
T Consensus 6 l~~l~~YllGsip~~~~i~k~~~~~DiR~~GSgN 39 (199)
T PRK14419 6 LIILLAYLLGSFPSGYLAGRWLKGIDLREIGSGS 39 (199)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCChhhcCCCC
Confidence 344556677775 789999987554455554444
No 78
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=28.42 E-value=2.4e+02 Score=20.71 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHhccccHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 030381 8 VRFSMVICRAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAGA-AFLLGRT 67 (178)
Q Consensus 8 ~~~~~~~~f~~~~i~~~~~~iP~~~-l~~~~G~l~g~~~~~~~~~~g~~lg~~~-~y~lgr~ 67 (178)
++|.-.-=|.-.+..++..|=|... +....|+..+-+.|.+++.+|..+=+.+ ...+++.
T Consensus 35 ~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~ 96 (169)
T PF02417_consen 35 RGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPL 96 (169)
T ss_pred cCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566667776556555 7778888887788888888887665554 3444443
No 79
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.32 E-value=1.1e+02 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHH
Q 030381 47 FVADSIGATIGAGAAFLLGRTIGKPFV 73 (178)
Q Consensus 47 ~~~~~~g~~lg~~~~y~lgr~~g~~~~ 73 (178)
++++.++..+|..++|++.++..+..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888887765444
No 80
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=28.11 E-value=1.7e+02 Score=27.41 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhcccccccc
Q 030381 123 LLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 156 (178)
Q Consensus 123 ~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 156 (178)
.--++.++.+..+..++...-.|-...|.++.-|
T Consensus 664 l~GlL~G~~vsGv~lAi~maNaGGAWDNAKKyIE 697 (765)
T PLN02255 664 LSGVLAGALVSGVQIAISASNTGGAWDNAKKYIE 697 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHH
Confidence 4455666666666667777777777777766433
No 81
>PRK14417 membrane protein; Provisional
Probab=27.44 E-value=1.6e+02 Score=23.36 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHhc------------chHHHHHHHHhcC
Q 030381 47 FVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLVP 105 (178)
Q Consensus 47 ~~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k------------~g~~~v~i~r~~P 105 (178)
++...++-.+||. .+|+++|...+..++++-+.|.=..+.-|...| +|...+.+.+..+
T Consensus 6 ll~~i~aYLlGSIp~g~li~k~~~g~DIR~~GSGN~GaTNv~R~~Gkk~gilvll~D~lKG~laV~la~~l~ 77 (232)
T PRK14417 6 LIMIPAGYLVGAIPMAYLLSRWRRGIDIRRYGSGNVGASNVIKTAGKRLGLAVFVFDVSKGALMILLAGWLG 77 (232)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556667775 789999987544455544433222222222222 4667777777664
No 82
>PRK14410 membrane protein; Provisional
Probab=27.33 E-value=1.5e+02 Score=23.58 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=19.1
Q ss_pred HHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 50 DSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 50 ~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
..+|-.+||. .+|+++|...+..+++.-++|
T Consensus 8 ~l~~YLlGSIp~g~ii~k~~~g~DiR~~GSgN 39 (235)
T PRK14410 8 LAVSYLIGSIPTSIIAGKLLKGIDIRNFGSGN 39 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCccccCCCC
Confidence 3456667776 689999987443355543433
No 83
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=27.26 E-value=1.7e+02 Score=27.10 Aligned_cols=33 Identities=6% Similarity=0.092 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhcccccccc
Q 030381 124 LEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 156 (178)
Q Consensus 124 ~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 156 (178)
--++.++.+..+..++...-.|-...|.++.-|
T Consensus 602 ~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE 634 (697)
T TIGR01104 602 SGVLAGVLVSGVQIAISASNTGGAWDNAKKYIE 634 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHh
Confidence 445555555566666666667777777766433
No 84
>PRK14399 membrane protein; Provisional
Probab=26.98 E-value=1.3e+02 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 46 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 46 ~~~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
.++...+|-.+||. .+|+++|...+..+++.-++|
T Consensus 11 ~il~~iigYLiGSIp~g~ii~k~~~g~DIR~~GSGN 46 (258)
T PRK14399 11 IILASVFGYFLGSISWSIIIVKKVGNIDIRTVGSGN 46 (258)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhCCCCccccCCCC
Confidence 34455556777775 568899986443344443333
No 85
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=3.1e+02 Score=21.44 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 030381 10 FSMVICRAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 74 (178)
Q Consensus 10 ~~~~~~f~~~~i~~~~~~iP~~~-l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~ 74 (178)
....++..+.-.....+..+-+. --.+-|...|.+....-+++|+++.=.++=..+|..-++.++
T Consensus 51 l~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~~~~~ 116 (223)
T COG0398 51 LVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVG 116 (223)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 33344444444444444445333 334556677777777777777777766666666655444333
No 86
>COG3037 SgaT Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.70 E-value=3.2e+02 Score=24.12 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHhhhhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHH
Q 030381 28 VPASVLTLGGGYLFGLPVGFVADSIG-----------------ATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAI 90 (178)
Q Consensus 28 iP~~~l~~~~G~l~g~~~~~~~~~~g-----------------~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~ 90 (178)
++.....+..|.+.|.++++--+..= ..+|.++++++|+++|++.-+ -.++.|+.|-.+.+
T Consensus 153 ~~~~~~vi~~~illGlyw~ispa~~~~~t~kvTg~~gfAiGH~q~l~~~~~~kvg~~fG~~~k~--stE~lklPk~L~ff 230 (481)
T COG3037 153 FSGWLLIIIGAILLGLYWAISPAITQKPTRKVTGGDGFAIGHQQSLAYWLAAKVGKKFGKKKKE--STEDLKLPKWLSIF 230 (481)
T ss_pred ccchHHHHHHHHHHHHHHHhchhhhhHHHHHhcCCCCeeeeehhhHHHHHHHHHHHHhCCCccC--CHHhccCcchhHHH
Confidence 55555666677777766655433221 256777777788888763111 11123444555666
Q ss_pred hcchHH
Q 030381 91 QRSGFK 96 (178)
Q Consensus 91 ~k~g~~ 96 (178)
|++...
T Consensus 231 rDs~va 236 (481)
T COG3037 231 RDSIVA 236 (481)
T ss_pred hcchHH
Confidence 666544
No 87
>PRK14418 membrane protein; Provisional
Probab=26.30 E-value=1.5e+02 Score=23.55 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhChHHHHhhhc
Q 030381 47 FVADSIGATIGAG-AAFLLGRTIGKPFVISKLK 78 (178)
Q Consensus 47 ~~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~ 78 (178)
.+...+|-.+||. .+|+++|...+..+++.-+
T Consensus 11 i~~~l~~YLlGSIp~g~ii~k~~~g~DiR~~GS 43 (236)
T PRK14418 11 LALFLLGYLIGSINFSIIVSKRFKKDDIREHGS 43 (236)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCCCCCCCC
Confidence 3445556777775 6899999864433444433
No 88
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=26.23 E-value=3.4e+02 Score=23.92 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHhhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHhChH
Q 030381 28 VPASVLTLGGGYLFGLPVGFVADSI-----------------GATIGAGAAFLLGRTIGKP 71 (178)
Q Consensus 28 iP~~~l~~~~G~l~g~~~~~~~~~~-----------------g~~lg~~~~y~lgr~~g~~ 71 (178)
+|+..+.+.++.+.|.+++..-+.. -.++|..++.++|++.|++
T Consensus 145 ~~~~~~Ii~g~l~lG~y~~v~pal~~~~~~kiTg~d~~aiGH~~~~g~~~s~~ig~~~G~k 205 (463)
T PRK12996 145 FEGVGLVFTGSLILGLVMAFFPALAQRYMRRITGTDDIAFGHFGTLGYVLSGWIGSLCGKG 205 (463)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCeEEEehhhHHHHHHHHHHHHhCCC
Confidence 5766777778888776655443222 2467788888888888863
No 89
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=25.81 E-value=1.2e+02 Score=23.00 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=14.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhccccHH
Q 030381 2 LRCFDLVRFSMVICRAVAYIPLTILAVPAS 31 (178)
Q Consensus 2 ~~~~~~~~~~~~~~f~~~~i~~~~~~iP~~ 31 (178)
+|.+++..++...++..+-.......+|+.
T Consensus 25 l~~lg~r~fg~llll~al~~l~P~~~iPG~ 54 (187)
T PF06055_consen 25 LDALGERSFGPLLLLLALPNLLPLSGIPGV 54 (187)
T ss_pred HHHhcccchHHHHHHHHHHHhCCCCCCCCc
Confidence 355566666666544444333322225653
No 90
>PRK14409 membrane protein; Provisional
Probab=25.12 E-value=1.6e+02 Score=22.81 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHH-----------h-cchHHHHHHHHhc
Q 030381 48 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAI-----------Q-RSGFKIVLLLRLV 104 (178)
Q Consensus 48 ~~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~-----------~-k~g~~~v~i~r~~ 104 (178)
+...++-.+||. .+|+++|...+..+++.-++|.=.....|.. + -+|...+.+.|..
T Consensus 4 ~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~GatNv~R~~G~~~g~~vll~D~lKG~lav~la~~~ 73 (205)
T PRK14409 4 IFALFSFISGSIPFGYWIALRFRGIDIRKHGSKNIGATNVGRVIGWKFGFIVLLLDALKGAVPVYLSASY 73 (205)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777776 6799999865444555444332222222222 2 2567777777554
No 91
>PF13974 YebO: YebO-like protein
Probab=24.75 E-value=2.1e+02 Score=18.76 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCh
Q 030381 49 ADSIGATIGAGAAFLLGRTIGK 70 (178)
Q Consensus 49 ~~~~g~~lg~~~~y~lgr~~g~ 70 (178)
++.+..++|-++.|++-|..-|
T Consensus 3 ~~~~~~lv~livWFFVnRaSvR 24 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVNRASVR 24 (80)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888889999888644
No 92
>COG5547 Small integral membrane protein [Function unknown]
Probab=24.71 E-value=1.8e+02 Score=17.89 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030381 39 YLFGLPVGFVADSIGATIGAGAAFLLGRT 67 (178)
Q Consensus 39 ~l~g~~~~~~~~~~g~~lg~~~~y~lgr~ 67 (178)
..+|+|...++..++ .+|-.+.++.-|.
T Consensus 25 ~t~GfwKtilviil~-~lGv~iGl~~~r~ 52 (62)
T COG5547 25 LTFGFWKTILVIILI-LLGVYIGLYKKRT 52 (62)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 457788776655443 3444444444333
No 93
>PRK14392 membrane protein; Provisional
Probab=24.59 E-value=1.8e+02 Score=22.61 Aligned_cols=56 Identities=13% Similarity=-0.023 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHhc------------chHHHHHHHHhc
Q 030381 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLV 104 (178)
Q Consensus 49 ~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k------------~g~~~v~i~r~~ 104 (178)
...+|-.+||. .+|+++|...+..+++.=++|.=..+..|...+ +|...+.+.+..
T Consensus 6 ~~l~~YLlGSIp~g~ii~k~~~g~DIR~~GSGN~GaTNv~R~~G~~~g~lvll~D~lKG~lav~la~~~ 74 (207)
T PRK14392 6 MFILAYLIGAIPSGVWIGKLFYHTDIRQAGSGNIGTTNTYRVLGPVAGTIVLVLDILKGTLAASLPILF 74 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677775 789999987444455544444322222222222 466666666665
No 94
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=24.24 E-value=3.8e+02 Score=25.11 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhcccccccc
Q 030381 123 LLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 156 (178)
Q Consensus 123 ~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 156 (178)
.--++.++.+..+..++...-.|-...|.++.-|
T Consensus 645 l~GlL~G~~vsGv~lAi~m~NaGGAWDNAKKyIE 678 (730)
T PLN02277 645 VAGMLMFATVSGILMALFLNTAGGAWDNAKKYIE 678 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHhHHHHHh
Confidence 3456666666666777777777877777766433
No 95
>PRK14403 membrane protein; Provisional
Probab=24.15 E-value=1.9e+02 Score=22.29 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=30.3
Q ss_pred HHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHhc------------chHHHHHHHHhcC
Q 030381 51 SIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLVP 105 (178)
Q Consensus 51 ~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k------------~g~~~v~i~r~~P 105 (178)
.+|-.+||. .+|+++|...+..+++.=++|.=-.+.-|...| +|...+.+.+...
T Consensus 8 i~~YLiGSIp~g~ii~k~~~g~DiR~~GSgN~GaTNv~R~~G~~~gi~vll~D~lKg~lav~~~~~~~ 75 (196)
T PRK14403 8 ILGYFIGSIPFSYLIPKWLKGIDVRKVGSGNVGATNAIRTTGPVVGGICLLLDALKGFFPVFIATTFS 75 (196)
T ss_pred HHHHHHhhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777 579999987544455544444322222222222 4556666666553
No 96
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.76 E-value=1.7e+02 Score=21.75 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhHHHHH
Q 030381 33 LTLGGGYLFGLPVGFV 48 (178)
Q Consensus 33 l~~~~G~l~g~~~~~~ 48 (178)
++++.|.++++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~ 21 (175)
T PRK14472 6 IILLSGGLLSPNPGLI 21 (175)
T ss_pred hhhhcCCccCCCHHHH
Confidence 4455555677655443
No 97
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=23.73 E-value=3.7e+02 Score=21.19 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 030381 6 DLVRFSMVICRAVAYIPLTILAVPASVLTLGGGYLFGL-PVGFVADSIGATIGAGAAFLLGRTIGKP 71 (178)
Q Consensus 6 ~~~~~~~~~~f~~~~i~~~~~~iP~~~l~~~~G~l~g~-~~~~~~~~~g~~lg~~~~y~lgr~~g~~ 71 (178)
+.+|+.....|...+.. +|-+.+....-.-+.+ -.|..++.++..+=+..+|++-|++|.+
T Consensus 119 ~~~p~l~~~lffitH~s-----vfls~v~~~vhfreRpgksgl~~svl~~~~lg~~~lfinrrLGtN 180 (236)
T COG5522 119 LQVPWLEFLLFFITHIS-----VFLSAVILIVHFRERPGKSGLVMSVLVAISLGIMCLFINRRLGTN 180 (236)
T ss_pred ccchHHHHHHHHHHHHH-----HHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34566666666665544 2323333322222322 3466677777777778889999999965
No 98
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=23.65 E-value=2.1e+02 Score=18.67 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=10.8
Q ss_pred HHHHHHHHHH---HHHHhChHHH
Q 030381 54 ATIGAGAAFL---LGRTIGKPFV 73 (178)
Q Consensus 54 ~~lg~~~~y~---lgr~~g~~~~ 73 (178)
..+|+.++|. +|++.|++.+
T Consensus 10 ~~lgG~IA~~GD~iG~kvGKkrl 32 (79)
T PF11283_consen 10 LLLGGLIAYLGDRIGSKVGKKRL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHh
Confidence 3445555553 5666666544
No 99
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=22.99 E-value=2.7e+02 Score=19.44 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030381 33 LTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (178)
Q Consensus 33 l~~~~G~l~g~~~~~~~~~~g~~lg~~~~ 61 (178)
+.+..|-.+|.+..++.......+|..+.
T Consensus 14 ~~i~v~~~iG~~~tll~vi~t~~lG~~ll 42 (119)
T PF04186_consen 14 VLILVGSWIGFLWTLLLVILTAVLGIWLL 42 (119)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55667777888888888888888886665
No 100
>PRK14405 membrane protein; Provisional
Probab=22.94 E-value=1.9e+02 Score=22.29 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=19.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 49 ~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
+..++-.+||. .+|+++|...+..+++.-++|
T Consensus 7 ~~l~~YLlGsip~~~iv~k~~~g~DiR~~GSGN 39 (202)
T PRK14405 7 AVVLSYLLGSVSFSYLIAKKIKGIDIRQHGSGN 39 (202)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCccccCCCC
Confidence 44556777776 679999986443355443333
No 101
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.93 E-value=1.7e+02 Score=20.82 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 030381 59 GAAFLLGRT 67 (178)
Q Consensus 59 ~~~y~lgr~ 67 (178)
.+.|++.|+
T Consensus 83 li~y~irR~ 91 (122)
T PF01102_consen 83 LISYCIRRL 91 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 446666554
No 102
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=22.66 E-value=2.2e+02 Score=18.27 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 030381 32 VLTLGGGYLF--GLPVGFVADSIGATIGAGAAFLLGRTIG 69 (178)
Q Consensus 32 ~l~~~~G~l~--g~~~~~~~~~~g~~lg~~~~y~lgr~~g 69 (178)
...+..+.-+ .++..+.=+.+|..+-+.++-.+|++..
T Consensus 19 l~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~ 58 (78)
T PF01169_consen 19 LATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLA 58 (78)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556 6777777777777777777777777753
No 103
>PRK14395 membrane protein; Provisional
Probab=22.52 E-value=2.7e+02 Score=21.38 Aligned_cols=30 Identities=27% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 50 DSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 50 ~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
..+|-.+||. .+|+++|..+.| +++.-++|
T Consensus 7 ~i~~YLlGSIp~~~ii~k~~g~D-iR~~GSgN 37 (195)
T PRK14395 7 FIIAYLLGAIPFAYWAGRYKGMD-VRKHGSGN 37 (195)
T ss_pred HHHHHHHHhhhHHHHHHHHcCCC-chhcCCCC
Confidence 4557777776 789999975554 44443333
No 104
>PRK14393 membrane protein; Provisional
Probab=22.52 E-value=2.6e+02 Score=21.47 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHH-----------h-cchHHHHHHHHhcC
Q 030381 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAI-----------Q-RSGFKIVLLLRLVP 105 (178)
Q Consensus 49 ~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~-----------~-k~g~~~v~i~r~~P 105 (178)
...+|-.+||. .+|+++|..|.| ++++-++|.=-...-|.. + -+|...+.+.+...
T Consensus 7 ~~i~~YLlGSip~~~ii~k~~g~D-iR~~GSgN~GaTNv~R~~G~k~g~~vll~D~lKG~lav~la~~~~ 75 (194)
T PRK14393 7 LLVGAYLLGSIPTGLLLAKAVGVD-IRNTGSGNIGATNVYRTLGRKVGILTLIGDCLKGLVPVLIARKLG 75 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCC-chhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34556677775 688999986655 444433332222222222 2 24666777777653
No 105
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=22.50 E-value=79 Score=21.92 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030381 51 SIGATIGAGAAFLLGRTI 68 (178)
Q Consensus 51 ~~g~~lg~~~~y~lgr~~ 68 (178)
.+.+++|+.++|++.+..
T Consensus 109 v~~n~~G~~lG~~l~~~~ 126 (133)
T PF04892_consen 109 VLANTLGALLGYLLYRLI 126 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 106
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=22.49 E-value=65 Score=18.68 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=13.1
Q ss_pred chHHHHHHHHHhcchHH
Q 030381 80 YPQFRSVALAIQRSGFK 96 (178)
Q Consensus 80 ~~~~~~~~~~~~k~g~~ 96 (178)
+..+++++.+++++|++
T Consensus 26 ~~~L~k~~~wld~rgWw 42 (45)
T PF12123_consen 26 DAELDKFTAWLDERGWW 42 (45)
T ss_dssp HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcCcE
Confidence 36789999999999876
No 107
>PRK03001 M48 family peptidase; Provisional
Probab=22.32 E-value=2e+02 Score=23.11 Aligned_cols=22 Identities=5% Similarity=-0.099 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030381 47 FVADSIGATIGAGAAFLLGRTI 68 (178)
Q Consensus 47 ~~~~~~g~~lg~~~~y~lgr~~ 68 (178)
++.+++....-+.+.|+++-+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~ 51 (283)
T PRK03001 30 MLIALLFALGMNFFSYWFSDKM 51 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333444445555555443
No 108
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=22.28 E-value=3.7e+02 Score=20.76 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhhcCc
Q 030381 53 GATIGAGAAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 53 g~~lg~~~~y~lgr~~g~~~~~~~~~~~ 80 (178)
.....-.++.++.|+.++. +.|.++|+
T Consensus 100 ~~~~al~~sl~~~~~~~~~-la~ilp~~ 126 (202)
T PF07290_consen 100 AAPVALFLSLFFTRYLGRP-LARILPKD 126 (202)
T ss_pred HHHHHHHHHHHHHHHHhHH-HHHhcCCC
Confidence 3344444566777887765 44556653
No 109
>PRK14415 membrane protein; Provisional
Probab=22.25 E-value=1.6e+02 Score=23.00 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=19.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHhhhcCc
Q 030381 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (178)
Q Consensus 49 ~~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~ 80 (178)
...+|-.+||. .+|+++|...+..+++.-++|
T Consensus 9 ~il~~YLlGSIp~g~ii~k~~~g~DIR~~GSgN 41 (216)
T PRK14415 9 VVIVSYILGSIPFGYLVSHRGSKIDIRSFGSGR 41 (216)
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccccCCCC
Confidence 44456666765 689999987443355544433
No 110
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=22.23 E-value=2e+02 Score=20.47 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 030381 45 VGFVADSIGATIGAGAAFLLGRTIGKPFVI 74 (178)
Q Consensus 45 ~~~~~~~~g~~lg~~~~y~lgr~~g~~~~~ 74 (178)
.-.....+.+.+++.++-++|++.+++..+
T Consensus 93 ~~a~~y~~~s~~~gl~a~~lG~~l~~~~~~ 122 (129)
T PRK14231 93 LLAVSYVLASFIGGLIMVKFGRMLSNKLLN 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555566666666667777776655333
No 111
>PRK01345 heat shock protein HtpX; Provisional
Probab=21.95 E-value=2.4e+02 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=13.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030381 35 LGGGYLFGLPVGFVADSIGATIGAGAAFLLGRT 67 (178)
Q Consensus 35 ~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~ 67 (178)
++.|++++...++.++.+-...-..+.|+.+.+
T Consensus 18 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (317)
T PRK01345 18 MGVGYLIGGAGGMMIALVIAAGMNLFSYWNSDK 50 (317)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 334444443333333322222334455555443
No 112
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=21.88 E-value=5.4e+02 Score=22.48 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 030381 124 LEYMLASWIGMMPITLALVYVGTTLKD 150 (178)
Q Consensus 124 ~~f~~~~~lg~~~~~~~~~~~G~~~~~ 150 (178)
..|...+.+-..--+.+..++|+...+
T Consensus 151 ~~~~~l~il~L~~Gt~~lmwLgE~Itk 177 (436)
T COG0201 151 IFFYLLIILQLTAGTMFLMWLGEQITK 177 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666677788888899988765
No 113
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=21.50 E-value=1.8e+02 Score=21.47 Aligned_cols=37 Identities=11% Similarity=-0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHH
Q 030381 51 SIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALA 89 (178)
Q Consensus 51 ~~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~ 89 (178)
.+|+.+=+.++...++...++.++++ |+++.++.++.
T Consensus 110 ~~Gg~l~Gli~~~~~Y~ls~~lI~~Y--r~~~~~~~~~~ 146 (154)
T TIGR03546 110 VMGSFVVGLILLPPAFAISKVIIAKY--RKRIVAWVNKF 146 (154)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
No 114
>PF06177 QueT: QueT transporter; InterPro: IPR010387 This entry is represented by Bacteriophage Dp-1, QueT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes [, ], suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.
Probab=21.47 E-value=3.3e+02 Score=19.97 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=11.9
Q ss_pred CCChhHHHHHHHHhhHHHH
Q 030381 120 PVPLLEYMLASWIGMMPIT 138 (178)
Q Consensus 120 ~~~~~~f~~~~~lg~~~~~ 138 (178)
++|++.-.....+|.+...
T Consensus 119 ~~pf~~~~~~v~~ge~i~~ 137 (152)
T PF06177_consen 119 GLPFWATYLSVALGEFISM 137 (152)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3677666666666665554
No 115
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=21.26 E-value=3.5e+02 Score=20.11 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Q 030381 33 LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFV 73 (178)
Q Consensus 33 l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~lgr~~g~~~~ 73 (178)
..+..|...|.++.+.+..+.+++|..+. |.-|....
T Consensus 19 ~fI~Vg~~IG~~~Tl~Lvilt~~~G~~l~----r~qG~~~l 55 (158)
T COG3030 19 LFIWVGSVIGVGWTLLLVILTSVLGALLL----RVQGFGTL 55 (158)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 44566777888888888888888876554 55554433
No 116
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=20.49 E-value=4.7e+02 Score=21.23 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcch
Q 030381 53 GATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 94 (178)
Q Consensus 53 g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~g 94 (178)
-...-....+..|++.|++.++. ++ ....+++.+...-=|
T Consensus 147 ~~~~~~~~~~~~GY~~G~~~i~~-l~-~~~~~~it~~a~ilG 186 (271)
T TIGR00828 147 VRLATRYYGLHYGYSKGVKIVDD-MG-GNNLQKLTEGASILG 186 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-Hh-ccHHHHHHHHHHHHH
Confidence 33444556667788888887743 33 235566655544444
No 117
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=20.32 E-value=4.7e+02 Score=21.12 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHhhhcCc---hH------HHHHHHHH-hcchHHHHHHHHhcCCCCh
Q 030381 42 GLPVGFVADSIGATIGAGAAFLLGRTI--GKPFVISKLKDY---PQ------FRSVALAI-QRSGFKIVLLLRLVPLLPF 109 (178)
Q Consensus 42 g~~~~~~~~~~g~~lg~~~~y~lgr~~--g~~~~~~~~~~~---~~------~~~~~~~~-~k~g~~~v~i~r~~P~~p~ 109 (178)
....+...+.++..+|-..+|.+.|+- ||+.++....-. +. +-..-... ...+++.+.++-..-.+|+
T Consensus 70 Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~~~~lP~ 149 (267)
T COG1177 70 SLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHIVFALPF 149 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhH
Confidence 355677778888899999999999862 233333221110 11 11111111 3568889989888888899
Q ss_pred hHHHHHHhccCCChhHHHHHHHHhhHHH
Q 030381 110 NMLNYLLSVTPVPLLEYMLASWIGMMPI 137 (178)
Q Consensus 110 ~~~~~~aG~~~~~~~~f~~~~~lg~~~~ 137 (178)
.+....+.+.+++...=-.+.-+|.-+|
T Consensus 150 v~~~v~a~l~~~d~~LeeAA~dLGAs~~ 177 (267)
T COG1177 150 VVVVVSARLQGFDRSLEEAARDLGASPW 177 (267)
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCCHH
Confidence 9888888888887643333333444333
No 118
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.22 E-value=3e+02 Score=22.22 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030381 52 IGATIGAGAAFLLGRTI 68 (178)
Q Consensus 52 ~g~~lg~~~~y~lgr~~ 68 (178)
+..+....+.|+.+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~i 52 (288)
T PRK03982 36 LLALIPNLISYYYSDKI 52 (288)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 33344455566555544
No 119
>PRK14397 membrane protein; Provisional
Probab=20.07 E-value=2.4e+02 Score=22.21 Aligned_cols=56 Identities=13% Similarity=-0.059 Sum_probs=30.1
Q ss_pred HHHHHHHHHH-HHHHHHHHhChHHHHhhhcCchHHHHHHHHHh------------cchHHHHHHHHhcC
Q 030381 50 DSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQ------------RSGFKIVLLLRLVP 105 (178)
Q Consensus 50 ~~~g~~lg~~-~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~------------k~g~~~v~i~r~~P 105 (178)
..++-.+||. .+|+++|...+..+++.-++|.=-...-|... -+|...+.+.+...
T Consensus 7 ~~~~YLlGSip~~~~i~k~~~g~DiR~~GSgN~GaTNv~R~~G~~~gilv~~~D~lKG~lav~l~~~~~ 75 (222)
T PRK14397 7 IATAYVMGSIPFGLVFARTFCGIDPRTGGSRNVGATNVARLCGTKWGVLTLVCDVLKGAVPVAVAMSIS 75 (222)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556667775 68999998744335544333322222222222 24666777777653
No 120
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.01 E-value=4.1e+02 Score=20.38 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=20.4
Q ss_pred HHHHHHhccCCChhHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 030381 111 MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 150 (178)
Q Consensus 111 ~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~ 150 (178)
.+-+.+|+.+++.........+ .+++.++.|..+++
T Consensus 144 avG~s~~~~g~~~~~~~~~igi----vs~i~~~~G~~lG~ 179 (206)
T TIGR02840 144 GAGIGASLLGLNPLATSILVAV----MSFIFVSLGLFLGK 179 (206)
T ss_pred HHHHHHHHhCccHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3556778888876554444444 44555555554443
Done!