Query 030381
Match_columns 178
No_of_seqs 144 out of 1126
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 71.4 15 0.00051 26.8 7.0 55 6-60 11-77 (189)
2 4ezc_A UREA transporter 1; mem 41.5 69 0.0024 26.2 6.5 62 3-64 42-105 (384)
3 2lbg_A Major prion protein; co 32.0 49 0.0017 16.2 3.2 20 49-68 6-25 (27)
4 4a01_A Proton pyrophosphatase; 26.5 1.1E+02 0.0039 27.3 5.7 32 123-154 665-696 (766)
5 2hfr_A Fowlicidin-3, cathelici 23.9 34 0.0012 16.4 1.1 18 102-119 2-19 (27)
6 1p58_D Envelope protein M; fla 20.2 77 0.0026 19.6 2.6 22 80-101 26-47 (75)
7 4av3_A K(+)-stimulated pyropho 19.4 1.2E+02 0.0043 27.0 4.6 34 123-156 643-676 (735)
8 2l9u_A Receptor tyrosine-prote 19.1 1.1E+02 0.0039 15.9 3.9 17 52-68 19-35 (40)
9 3j27_B Matrix protein, small e 19.0 72 0.0025 19.7 2.2 21 80-100 26-46 (75)
10 2sqc_A Squalene-hopene cyclase 17.1 64 0.0022 28.0 2.2 35 54-94 87-121 (631)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=71.37 E-value=15 Score=26.78 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHh--cccc----------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 030381 6 DLVRFSMVICRAVAYIPLTI--LAVP----------ASVLTLGGGYLFGLPVGFVADSIGATIGAGA 60 (178)
Q Consensus 6 ~~~~~~~~~~f~~~~i~~~~--~~iP----------~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~ 60 (178)
+.+......++..+-+.... +|+| ++.....+++++|++.|.+...++..+++..
T Consensus 11 ~~k~l~~~all~Al~~vl~~~~ipip~~~~~~ki~l~~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 11 QNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCTTSCSSCCCCGGGHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceecHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444332 2332 3457789999999999999999988888766
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=41.51 E-value=69 Score=26.22 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=36.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030381 3 RCFDLVRFSMVICRAVAYIPLTILAVP--ASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLL 64 (178)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~i~~~~~~iP--~~~l~~~~G~l~g~~~~~~~~~~g~~lg~~~~y~l 64 (178)
+|+++++...-.+=..+=-..+..+.+ -+-+.+..|..++-+...+.+.+|+.+|....+++
T Consensus 42 ~~~~~~~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~ll 105 (384)
T 4ezc_A 42 NWLKDKPQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLL 105 (384)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456666653333323333334455554 55577778888777666677777777766665443
No 3
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=32.05 E-value=49 Score=16.16 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030381 49 ADSIGATIGAGAAFLLGRTI 68 (178)
Q Consensus 49 ~~~~g~~lg~~~~y~lgr~~ 68 (178)
....|..+|..-.|++|+..
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 45678888888899888765
No 4
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=26.49 E-value=1.1e+02 Score=27.27 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhcccccc
Q 030381 123 LLEYMLASWIGMMPITLALVYVGTTLKDLSDV 154 (178)
Q Consensus 123 ~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~ 154 (178)
.--++....+..+..++...-.|-...|.++.
T Consensus 665 l~G~L~G~~vsGv~~Ai~maNaGGAWDNAKKy 696 (766)
T 4a01_A 665 LSGVLAGSLVSGVQIAISASNTGGAWDNAKKY 696 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhHHHH
Confidence 45677777777888888888888888877664
No 5
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=23.91 E-value=34 Score=16.40 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=12.5
Q ss_pred HhcCCCChhHHHHHHhcc
Q 030381 102 RLVPLLPFNMLNYLLSVT 119 (178)
Q Consensus 102 r~~P~~p~~~~~~~aG~~ 119 (178)
||.|-+|-.+...++|+-
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 678888877556666654
No 6
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=20.24 E-value=77 Score=19.58 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhcchHHHHHHH
Q 030381 80 YPQFRSVALAIQRSGFKIVLLL 101 (178)
Q Consensus 80 ~~~~~~~~~~~~k~g~~~v~i~ 101 (178)
+++++|.|++.=||....+...
T Consensus 26 ~~~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 26 WKHAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHHHChHHHHHHH
Confidence 4688999999999987776554
No 7
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=19.36 E-value=1.2e+02 Score=26.98 Aligned_cols=34 Identities=3% Similarity=0.042 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhcccccccc
Q 030381 123 LLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 156 (178)
Q Consensus 123 ~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 156 (178)
.--|+....+..+..++...-.|-...|.++.-|
T Consensus 643 l~g~L~g~~v~G~~~Ai~m~n~GGAWDNAKK~iE 676 (735)
T 4av3_A 643 VGGVLIGTVLSGAMLAILTANSGGAWDNAKKYLE 676 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHhhhHHhhc
Confidence 4567778888888888888889988888877544
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=19.13 E-value=1.1e+02 Score=15.87 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030381 52 IGATIGAGAAFLLGRTI 68 (178)
Q Consensus 52 ~g~~lg~~~~y~lgr~~ 68 (178)
+-.++|+...||=||+-
T Consensus 19 if~~lg~tflywrgrrh 35 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEccccc
Confidence 34567888899988873
No 9
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=19.05 E-value=72 Score=19.69 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=16.0
Q ss_pred chHHHHHHHHHhcchHHHHHH
Q 030381 80 YPQFRSVALAIQRSGFKIVLL 100 (178)
Q Consensus 80 ~~~~~~~~~~~~k~g~~~v~i 100 (178)
+++++|.|++.=||....+..
T Consensus 26 ~~~l~rvE~WilrNp~~al~~ 46 (75)
T 3j27_B 26 WKHAQRIETWILRHPGFTIMA 46 (75)
T ss_dssp HHHHHHHHHHHHHCCTHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHH
Confidence 368899999998887665543
No 10
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=17.05 E-value=64 Score=27.98 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcch
Q 030381 54 ATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 94 (178)
Q Consensus 54 ~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~g 94 (178)
++.+++.+|..=|..|.+ ++.+..+|.++++.++|
T Consensus 87 ~~~~t~~~y~aLrllg~~------~~~~~~~~ar~~i~~~G 121 (631)
T 2sqc_A 87 DLDTTIEAYVALKYIGMS------RDEEPMQKALRFIQSQG 121 (631)
T ss_dssp CHHHHHHHHHHHHHHTCC------TTSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHcC
Confidence 466778889988988853 23568889999988875
Done!