Query 030381
Match_columns 178
No_of_seqs 144 out of 1126
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 20:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030381.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030381hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2osoa1 d.278.1.3 (A:5-156) Hy 12.2 30 0.0022 22.5 0.7 39 52-96 39-77 (152)
2 d1wc9a_ d.278.1.2 (A:) Traffic 10.8 1.1E+02 0.0077 19.9 3.3 18 82-99 59-76 (161)
3 d1bl0a1 a.4.1.8 (A:9-62) MarA 8.1 1.5E+02 0.011 14.8 3.5 46 82-127 4-52 (54)
4 d1t1ea2 d.58.3.2 (A:12-190) Pr 8.1 1E+02 0.0075 20.2 2.4 31 66-96 59-90 (179)
5 d2j3wb1 d.278.1.2 (B:21-188) T 8.0 1.6E+02 0.012 19.0 3.4 16 83-98 62-77 (168)
6 d1w6ka2 a.102.4.2 (A:100-378) 7.8 93 0.0068 22.3 2.1 36 53-94 50-85 (279)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 6.6 2.2E+02 0.016 15.6 6.5 13 116-128 60-72 (86)
8 d1t33a2 a.121.1.1 (A:89-220) P 6.3 3E+02 0.022 16.8 4.1 38 52-93 81-122 (132)
9 d2q7ra1 f.56.1.1 (A:1-139) Ara 6.3 3.1E+02 0.023 16.9 5.3 23 55-77 17-39 (139)
10 d1kp0a1 c.55.2.1 (A:1-156) Cre 6.1 50 0.0036 20.7 -0.2 37 81-123 26-62 (156)
No 1
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=12.16 E-value=30 Score=22.52 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcchHH
Q 030381 52 IGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFK 96 (178)
Q Consensus 52 ~g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~g~~ 96 (178)
++..=.+.+.|+.|+..||+.- .+..+.+.++++++|+-
T Consensus 39 l~~~~~~~iLY~aGk~lGr~~~------~k~~eel~~ff~~~g~G 77 (152)
T d2osoa1 39 VKELGSETSLYEIGEEFGKMLS------PKNIEELKKIFKLMNFG 77 (152)
T ss_dssp HC--CCCCCHHHHHHHHHHHHC------CSSHHHHHHHHHHHTCC
T ss_pred hcccchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcCCc
Confidence 3444445678999999886532 13567777788887754
No 2
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.80 E-value=1.1e+02 Score=19.93 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcchHHHHH
Q 030381 82 QFRSVALAIQRSGFKIVL 99 (178)
Q Consensus 82 ~~~~~~~~~~k~g~~~v~ 99 (178)
+...+.+++.|..|..++
T Consensus 59 ~~l~~l~fI~~~~wk~~f 76 (161)
T d1wc9a_ 59 DFRETADVIAKVAFKMYL 76 (161)
T ss_dssp CHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHc
Confidence 344455556665555443
No 3
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=8.12 E-value=1.5e+02 Score=14.77 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcc---hHHHHHHHHhcCCCChhHHHHHHhccCCChhHHH
Q 030381 82 QFRSVALAIQRS---GFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYM 127 (178)
Q Consensus 82 ~~~~~~~~~~k~---g~~~v~i~r~~P~~p~~~~~~~aG~~~~~~~~f~ 127 (178)
.++++.+++++| +...==+++....-|..+.-..--.+++++..|+
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl 52 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYI 52 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHh
Confidence 344555555543 2222234444444444444444455555555554
No 4
>d1t1ea2 d.58.3.2 (A:12-190) Pro-kumamolisin activation domain {Bacillus sp. MN-32 [TaxId: 198803]}
Probab=8.11 E-value=1e+02 Score=20.22 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHhChHHHHhhh-cCchHHHHHHHHHhcchHH
Q 030381 66 RTIGKPFVISKL-KDYPQFRSVALAIQRSGFK 96 (178)
Q Consensus 66 r~~g~~~~~~~~-~~~~~~~~~~~~~~k~g~~ 96 (178)
+++.++-+.+++ ...+.++++++|++++|..
T Consensus 59 ~~Lt~~e~~~~f~ps~~~~~~V~~wL~~~Gl~ 90 (179)
T d1t1ea2 59 VHLEREAFAASHGASLDDFAEIRKFAEAHGLT 90 (179)
T ss_dssp CCCCHHHHHHHHSCCHHHHHHHHHHHHHTTCE
T ss_pred ccCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 334444444443 3457889999999999864
No 5
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=8.05 E-value=1.6e+02 Score=19.03 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHHHHHHHhcchHHHH
Q 030381 83 FRSVALAIQRSGFKIV 98 (178)
Q Consensus 83 ~~~~~~~~~k~g~~~v 98 (178)
...+.+++.|..|..+
T Consensus 62 ~~~~l~fI~k~~W~~l 77 (168)
T d2j3wb1 62 VLNILLFIKVNVWKAL 77 (168)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554443
No 6
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.81 E-value=93 Score=22.32 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhhcCchHHHHHHHHHhcch
Q 030381 53 GATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 94 (178)
Q Consensus 53 g~~lg~~~~y~lgr~~g~~~~~~~~~~~~~~~~~~~~~~k~g 94 (178)
+.+.++..+|..-|..|.+ .+.+..+|.++++.++|
T Consensus 50 s~i~~T~~ay~ALrl~G~~------~~~p~m~rAr~wI~~~G 85 (279)
T d1w6ka2 50 STVFGTALNYVSLRILGVG------PDDPDLVRARNILHKKG 85 (279)
T ss_dssp CBHHHHHHHHHHHHHTTCC------TTSHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCC------CCcHHHHHHHHHHHhCC
Confidence 4466677788888888743 23568888999988875
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=6.59 E-value=2.2e+02 Score=15.60 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=6.1
Q ss_pred HhccCCChhHHHH
Q 030381 116 LSVTPVPLLEYML 128 (178)
Q Consensus 116 aG~~~~~~~~f~~ 128 (178)
....+++...++.
T Consensus 60 L~~~Gi~~t~l~a 72 (86)
T d2vv5a3 60 LGRVGVQTASVIA 72 (86)
T ss_dssp HHTTTCCSTTHHH
T ss_pred HHHhCCCHHHHHH
Confidence 3445555544443
No 8
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=6.32 E-value=3e+02 Score=16.80 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHhhhc----CchHHHHHHHHHhcc
Q 030381 52 IGATIGAGAAFLLGRTIGKPFVISKLK----DYPQFRSVALAIQRS 93 (178)
Q Consensus 52 ~g~~lg~~~~y~lgr~~g~~~~~~~~~----~~~~~~~~~~~~~k~ 93 (178)
.-+++|-++.|.++|.. +.+..+ ..+..+++++.+.+|
T Consensus 81 ~~sivGq~l~f~var~~----~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 81 THALLGEVLAFRLGKET----ILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHHHTHHH----HHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 33567777787777664 333332 245677777777665
No 9
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=3.1e+02 Score=16.93 Aligned_cols=23 Identities=4% Similarity=-0.099 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhChHHHHhhh
Q 030381 55 TIGAGAAFLLGRTIGKPFVISKL 77 (178)
Q Consensus 55 ~lg~~~~y~lgr~~g~~~~~~~~ 77 (178)
.++.....+++.+.++...+.+.
T Consensus 17 ~l~~~~~~~ls~~Vg~aR~k~~v 39 (139)
T d2q7ra1 17 LISVVQNGFFAHKVEHESRTQNG 39 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444555677777765444433
No 10
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=6.07 E-value=50 Score=20.74 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcchHHHHHHHHhcCCCChhHHHHHHhccCCCh
Q 030381 81 PQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPL 123 (178)
Q Consensus 81 ~~~~~~~~~~~k~g~~~v~i~r~~P~~p~~~~~~~aG~~~~~~ 123 (178)
++++|+++.++++|.-.+++ . -|.+ +.|..|....+.
T Consensus 26 ~R~~klr~~M~e~~iDalli---t--~~~n-i~YlTGf~~~~~ 62 (156)
T d1kp0a1 26 RRZBRLRAWMAKSBIDAVLF---T--SYHN-INYYSGWLYCYF 62 (156)
T ss_dssp HHHHHHHHHHHHHTCSEEEE---C--SHHH-HHHHHSCCCCCT
T ss_pred HHHHHHHHHHHHCCCCEEEE---c--Cccc-CeeecCCCcCcc
Confidence 57888999999998776654 2 3556 889889776554
Done!