BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030383
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVS
FFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLL
NGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVIIFLVQ

High Scoring Gene Products

Symbol, full name Information P value
AT3G26070 protein from Arabidopsis thaliana 7.1e-29
AT3G26080 protein from Arabidopsis thaliana 2.8e-27

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030383
        (178 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092150 - symbol:AT3G26070 species:3702 "Arabi...   321  7.1e-29   1
TAIR|locus:2092165 - symbol:AT3G26080 species:3702 "Arabi...   306  2.8e-27   1


>TAIR|locus:2092150 [details] [associations]
            symbol:AT3G26070 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA;ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0010287 "plastoglobule"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            InterPro:IPR006843 Pfam:PF04755 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AB023041 GO:GO:0005198 GO:GO:0009535
            GO:GO:0010287 eggNOG:NOG08027 EMBL:AY081657 EMBL:AY065118
            EMBL:AY062689 EMBL:AY093379 IPI:IPI00517311 RefSeq:NP_189236.3
            UniGene:At.26896 UniGene:At.67151 STRING:Q9LU85 PaxDb:Q9LU85
            PRIDE:Q9LU85 EnsemblPlants:AT3G26070.1 GeneID:822204
            KEGG:ath:AT3G26070 GeneFarm:2857 TAIR:At3g26070
            HOGENOM:HOG000240350 InParanoid:Q9LU85 OMA:AIAGKNR
            ProtClustDB:CLSN2680143 Genevestigator:Q9LU85 Uniprot:Q9LU85
        Length = 242

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 68/129 (52%), Positives = 87/129 (67%)

Query:    53 DKRRNRV----SFFSGFSTK--RVES---FKEELFQAIKPLDRGAEASPEDQARVDQIAR 103
             D+ R RV    SF   F T+  R E     K+EL +AI+PL+RGA ASP+DQ R+DQ+AR
Sbjct:    45 DRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLAR 104

Query:   104 KLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNI 163
             K+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ+IN+DTL+ QN+
Sbjct:   105 KVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNM 163

Query:   164 ETWPFFNQV 172
             ETWPF+N V
Sbjct:   164 ETWPFYNSV 172


>TAIR|locus:2092165 [details] [associations]
            symbol:AT3G26080 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA;ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] InterPro:IPR006843 Pfam:PF04755
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB023041 GO:GO:0005198
            GO:GO:0009535 HOGENOM:HOG000240350 ProtClustDB:CLSN2680143
            EMBL:BT014990 EMBL:BT020596 IPI:IPI00546873 RefSeq:NP_189237.2
            UniGene:At.70372 STRING:Q6DBN2 PaxDb:Q6DBN2 PRIDE:Q6DBN2
            EnsemblPlants:AT3G26080.1 GeneID:822205 KEGG:ath:AT3G26080
            GeneFarm:2860 TAIR:At3g26080 eggNOG:NOG251522 InParanoid:Q6DBN2
            OMA:QSILQTQ Genevestigator:Q6DBN2 Uniprot:Q6DBN2
        Length = 234

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 66/134 (49%), Positives = 87/134 (64%)

Query:    45 KPLNSSVSDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARV 98
             K L+    D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +
Sbjct:    32 KLLSIRKGDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLI 90

Query:    99 DQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTL 158
             DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ IN+DTL
Sbjct:    91 DQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN-YQCINMDTL 149

Query:   159 RAQNIETWPFFNQV 172
             + Q +ETWPF+N V
Sbjct:   150 KVQRMETWPFYNSV 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       146   0.00079  103 3  11 22  0.43    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  16.10u 0.07s 16.17t   Elapsed:  00:00:10
  Total cpu time:  16.11u 0.07s 16.18t   Elapsed:  00:00:11
  Start:  Fri May 10 23:01:50 2013   End:  Fri May 10 23:02:01 2013

Back to top