BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030383
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I2H|A Chain A, Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL-1l)
           Conserved Homer 1 Domain
          Length = 168

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 30  NIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAE 89
           N  I  ++ F   +QK      +D R N V +  GFS++   S   E FQ  K   R A+
Sbjct: 63  NSTITPNMTFTKTSQK--FGQWADSRANTV-YGLGFSSEHHLSKFAEKFQEFKEAARLAK 119

Query: 90  ASPEDQARVDQIARKLEAVNDIKEPLKSNLLNG 122
              +++  +     +  A  D++ PL    +NG
Sbjct: 120 EKSQEKMELTSTPSQESAGGDLQSPLTPESING 152


>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
           Dehydrogenase
 pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
           Dehydrogenase
 pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
           Dehydrogenase
 pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
           Dehydrogenase
          Length = 310

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 86  RGAEASPEDQARVDQIARK 104
           RGA  SPED+AR+D+  R+
Sbjct: 197 RGAALSPEDRARIDEGVRR 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,906,582
Number of Sequences: 62578
Number of extensions: 124140
Number of successful extensions: 452
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 5
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)