BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030383
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic
OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1
Length = 242
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 97/130 (74%), Gaps = 10/130 (7%)
Query: 52 SDKRRNRV----SFFSGFSTK-----RVESFKEELFQAIKPLDRGAEASPEDQARVDQIA 102
D+ R RV SF F T+ + + K+EL +AI+PL+RGA ASP+DQ R+DQ+A
Sbjct: 44 GDRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103
Query: 103 RKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQN 162
RK+EAVN KEPLKS+L+NGKWEL+YTTS S+LQ K+P+FLR YQ+IN+DTL+ QN
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQN 162
Query: 163 IETWPFFNQV 172
+ETWPF+N V
Sbjct: 163 METWPFYNSV 172
>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic
OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1
Length = 234
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 95/127 (74%), Gaps = 8/127 (6%)
Query: 52 SDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKL 105
D+ R R+ + FS G + KR + K EL +AI+PL+RGA ASP+DQ +DQ+ARK+
Sbjct: 39 GDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLIDQLARKV 97
Query: 106 EAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIET 165
EAVN KEPLKS+L+NGKWEL+YTTS ++LQ K+P+FLR + YQ IN+DTL+ Q +ET
Sbjct: 98 EAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLR-SLTNYQCINMDTLKVQRMET 156
Query: 166 WPFFNQV 172
WPF+N V
Sbjct: 157 WPFYNSV 163
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP2 PE=2 SV=1
Length = 319
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 67 TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWE 125
T V K +L +A+ +RG AS E +A V ++ +LEA N P ++ LLNGKW
Sbjct: 89 TSEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWI 148
Query: 126 LLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQ 171
L YT+ L L +G + Q + ++ + +Q I++ F Q
Sbjct: 149 LAYTSFSQLFP------LLGSGSLPQLVKVEEI-SQTIDSENFTVQ 187
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic
OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1
Length = 318
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 66 STKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSN-LLNGKW 124
S + E K L ++ DRG S + +A + ++ +LE+ N P ++ LLNGKW
Sbjct: 87 SVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKW 146
Query: 125 ELLYTTSQSL--LQTKRPKFLRPNGKIYQAINIDTLRAQN 162
L YT+ L L ++R + L +I Q I+ D+ QN
Sbjct: 147 ILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQN 186
>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic
OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1
Length = 409
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 86 RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
RG ASP+ V+ + LE + I+ P S+L+ G+W L++TT RP P
Sbjct: 88 RGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTT--------RPGTASP 139
Query: 146 NGKIYQAINIDTL 158
+ + +++ T+
Sbjct: 140 IQRTFTGVDVFTV 152
>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1
Length = 358
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWEL 126
+ +E K L + + G A E +A V + +LEA N P++ +LLNG W L
Sbjct: 130 ENLEGLKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVL 189
Query: 127 LYTTSQSLL 135
LYT S LL
Sbjct: 190 LYTASSELL 198
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica
campestris GN=PAP1 PE=1 SV=1
Length = 327
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 47 LNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLE 106
LNSSV++K V+ + S + E K L ++ DRG AS E +A + ++ +LE
Sbjct: 81 LNSSVAEK----VAEEAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLE 136
Query: 107 AVNDIKEPLKSN-LLNGKWELLYTTSQSL--LQTKRPKFLRPNGKIYQAINIDTLRAQN 162
+ N P ++ LLNGKW L+YT+ L L ++R L +I Q I+ D+ N
Sbjct: 137 SKNPNPAPNEALFLLNGKWILVYTSFVGLFPLLSRRISPLVKVDEISQTIDSDSFTVHN 195
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSN-LLNGKWEL 126
+ E K L ++ DRG AS E +A + + +LE+ N P ++ LLNGKW L
Sbjct: 81 EETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWIL 140
Query: 127 LYTTSQSL--LQTKRPKFLRPNGKIYQAINIDTLRAQN 162
YT+ +L L ++ L +I Q I+ D QN
Sbjct: 141 AYTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQN 178
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica
campestris GN=PAP2 PE=1 SV=1
Length = 319
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 66 STKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSN-LLNGKW 124
S + E K L ++ DRG AS E +A + + +LE+ N P + LLNGKW
Sbjct: 88 SVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKW 147
Query: 125 ELLYTT 130
L YT+
Sbjct: 148 ILAYTS 153
>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic
OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1
Length = 273
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 70 VESFKEELFQAIKPLDRGAEASPED-QARVDQIARKLEAVNDIKEPLKS-NLLNGKWELL 127
V KEEL++A+K ++RG D + ++ + + LE N EP + + G W+L+
Sbjct: 83 VSHIKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLI 142
Query: 128 YTTSQSLLQTKRPKF-LR---PNGKIYQAINI 155
Y+T ++L +KR K LR G + Q I+I
Sbjct: 143 YSTI-TVLGSKRTKLGLRDFVSLGDLLQQIDI 173
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu
GN=PAP PE=2 SV=1
Length = 323
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELL 127
+++ K+ L + DRG A+ E +A + ++ +LEA N P ++ LLN KW L+
Sbjct: 95 EIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 154
Query: 128 YTTSQSL 134
YT+ L
Sbjct: 155 YTSFSGL 161
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
Length = 326
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 73 FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTS 131
K++L ++ +RG AS E +A + ++ +LE+ N P ++ LLNGKW L YT+
Sbjct: 102 LKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSF 161
Query: 132 QSLLQTKRPKFLRPN------GKIYQAINIDTLRAQN 162
L P R N +I Q I+ ++ QN
Sbjct: 162 SGLF----PLLSRGNLPLVRVEEISQTIDSESFTVQN 194
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
Length = 326
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 73 FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTS 131
K++L ++ +RG AS E +A + ++ +LE+ N P ++ LLNGKW L YT+
Sbjct: 102 LKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSF 161
Query: 132 QSLLQTKRPKFLRPN------GKIYQAINIDTLRAQN 162
L P R N +I Q I+ ++ QN
Sbjct: 162 SGLF----PLLSRGNLPLVRVEEISQTIDSESFTVQN 194
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast
OS=Cucumis sativus GN=CHRC PE=1 SV=1
Length = 322
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 73 FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTS 131
K+ L + DRG S + +A + ++ +LE+ N P ++ LLNGKW L YTT
Sbjct: 99 LKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTF 158
Query: 132 QSLLQ-TKRPKFLRPNGKIYQAINIDTLRAQN 162
L R L +I Q I+ + L QN
Sbjct: 159 AGLFPLLSRNLPLVKVEEISQTIDSENLTVQN 190
>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic
OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
Length = 239
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 85 DRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTT 130
D G SPE V Q+A +L+ +KEP+K+ L+ G WE++Y +
Sbjct: 80 DGGVTLSPEQHKEVAQVAGELQKYC-VKEPVKNPLIFGDWEVVYCS 124
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic
OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1
Length = 376
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 41 PRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQ 100
PRN+ + + S S E K L ++ + G +A E +A V +
Sbjct: 122 PRNEDEWGGEIGGETEADAGNGSAVSDPTWE-LKRCLADSVYGTELGFKAGSEVRAEVLE 180
Query: 101 IARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLL 135
+ +LEA+N PL++ LL+G W LLYT L+
Sbjct: 181 LVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELI 216
>sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP3 PE=3 SV=1
Length = 374
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 85 DRGAEASPEDQARVDQIARKLEAVNDIKEPLK-SNLLNGKWELLYTTSQSLL 135
D G AS E + V ++ +LEA N EP++ ++LL G W L+YT LL
Sbjct: 161 DLGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILIYTAYSELL 212
>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica
campestris GN=PAP3 PE=2 SV=1
Length = 360
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 87 GAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLL 135
G A E +A V +I +LEA+N + P+++ LL+G W LLYT LL
Sbjct: 151 GFRAGSEVRAEVLEIVNQLEALNPTQAPVENPELLDGNWVLLYTAFSELL 200
>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic
OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 84 LDRGAEASPEDQARVDQIARKLEAVN---DIKEPLKSNLLNGKWELLYTT--SQSLLQTK 138
L+RG AS +D R + A++LE D+ + L + L GKW LLY++ S L
Sbjct: 98 LNRGLVASVDDLERAEVAAKELETAGGPVDLTDDL--DKLQGKWRLLYSSAFSSRSLGGS 155
Query: 139 RPKF----LRPN--GKIYQAINIDTLRAQNI------ETWPF 168
RP L P G+++Q I++ + NI WPF
Sbjct: 156 RPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPF 197
>sp|Q06625|GDE_YEAST Glycogen debranching enzyme OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GDB1 PE=1 SV=1
Length = 1536
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 101 IARKLEAVNDIKEPLKSNLLNGKWELLYTTSQ 132
+ RK+ ND+ PL +NL NG W L YT S+
Sbjct: 943 VLRKIVFYNDLAHPLSANLRNGHWALDYTISR 974
>sp|B9L101|OBG_THERP GTPase obg OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159
/ P-2) GN=obg PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 92 PEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQ 151
PE QA +IAR L+ + P+ + G EL+ T + L Q RP+ + P + ++
Sbjct: 290 PEAQANWPRIARALDELGYTAYPISAATGQGVGELIRATWERLQQLPRPERVAPPLRSHR 349
Query: 152 AINIDTLRAQNIETW 166
+D R+Q E W
Sbjct: 350 VYTLD--RSQ--ERW 360
>sp|A1RRX6|PYRH_PYRIL Uridylate kinase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM
9189) GN=pyrH PE=3 SV=1
Length = 217
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 22 LNLFYSKPNIIIRTHLL--FCPRNQKPLNSSVSDKRRNRVSFFSGF----STKRVESFKE 75
L ++ S+ N ++ LL CP + + RR R++ GF ST V +
Sbjct: 62 LGIYASRLNALLFISLLEDACPIVPTNIEEFLDAWRRCRITVTGGFQPGQSTATVAALVA 121
Query: 76 ELFQAIKPLDRG-AEASPEDQARVDQIARKLEAV--NDIKEPLKSNLLNGKWELLYTTSQ 132
E +A L+ +A + +++ A++L + ++ + LKS++L G +EL+ T S
Sbjct: 122 EAVKAPVLLNAANIDAVYSEDPKINPNAKRLPVLTYDEFERILKSSVLPGGYELMDTWSI 181
Query: 133 SLLQ 136
S+L+
Sbjct: 182 SILK 185
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 41 PRNQKPLNSSVSDKRRNRVSFFSGFSTK-------RVESFKEELFQAIKPLDRGAEASPE 93
PR ++ ++D +R R+S +G+ K + SF++EL + LD+ S +
Sbjct: 20 PRRNGSIHGEITDVKRRRLSERNGYGDKKGSSSKEKTSSFEDELAEYASQLDQDEIKSSK 79
Query: 94 DQ 95
DQ
Sbjct: 80 DQ 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,163,166
Number of Sequences: 539616
Number of extensions: 2153368
Number of successful extensions: 6348
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 6333
Number of HSP's gapped (non-prelim): 30
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)