Query 030383
Match_columns 178
No_of_seqs 143 out of 294
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:54:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 99.9 1.6E-26 3.5E-31 187.2 11.1 99 71-170 1-103 (198)
2 TIGR02116 toxin_Txe_YoeB toxin 81.6 4.1 9E-05 28.7 5.0 20 92-112 17-36 (80)
3 PF05015 Plasmid_killer: Plasm 71.4 16 0.00035 26.7 5.9 54 78-131 10-80 (93)
4 PF06251 Caps_synth_GfcC: Caps 60.4 12 0.00026 31.4 3.8 66 68-135 53-131 (229)
5 cd03715 RT_ZFREV_like RT_ZFREV 50.8 35 0.00076 27.7 4.9 43 86-128 5-56 (210)
6 PF05973 Gp49: Phage derived p 49.9 46 0.00099 23.6 4.9 43 90-132 6-50 (91)
7 PF14834 GST_C_4: Glutathione 45.4 32 0.00068 27.1 3.6 40 83-126 33-72 (117)
8 cd01645 RT_Rtv RT_Rtv: Reverse 41.8 66 0.0014 26.4 5.3 43 86-128 5-55 (213)
9 smart00550 Zalpha Z-DNA-bindin 41.6 51 0.0011 22.6 3.9 55 70-127 4-65 (68)
10 TIGR02530 flg_new flagellar op 39.0 39 0.00085 25.7 3.2 26 85-110 27-52 (96)
11 PF07240 Turandot: Stress-indu 37.1 83 0.0018 23.4 4.6 36 75-110 13-48 (85)
12 PF12283 Protein_K: Bacterioph 35.8 1.1E+02 0.0023 21.0 4.6 36 70-108 5-41 (56)
13 PF07624 PSD2: Protein of unkn 34.1 70 0.0015 22.5 3.7 24 87-110 37-60 (76)
14 PF12644 DUF3782: Protein of u 33.4 1.1E+02 0.0025 20.3 4.5 35 69-109 9-43 (64)
15 PF14357 DUF4404: Domain of un 32.4 69 0.0015 23.3 3.5 22 86-107 15-36 (85)
16 KOG1683 Hydroxyacyl-CoA dehydr 27.9 11 0.00023 35.1 -1.8 100 69-173 79-188 (380)
17 PF07278 DUF1441: Protein of u 27.4 92 0.002 25.4 3.8 37 70-106 103-139 (152)
18 TIGR00053 addiction module tox 26.4 61 0.0013 22.8 2.3 21 93-113 23-43 (89)
19 PRK10470 ribosome hibernation 25.7 66 0.0014 23.1 2.5 28 84-111 6-33 (95)
20 PHA00097 K protein K 25.0 2E+02 0.0044 19.6 4.5 36 70-108 5-41 (56)
21 COG3880 Modulator of heat shoc 24.6 1.2E+02 0.0027 25.4 4.1 41 67-113 135-175 (176)
22 PLN03014 carbonic anhydrase 24.5 97 0.0021 28.5 3.8 19 91-109 101-119 (347)
23 PF00356 LacI: Bacterial regul 24.1 97 0.0021 20.0 2.7 18 88-105 24-41 (46)
24 PRK10324 translation inhibitor 23.6 82 0.0018 23.9 2.7 28 84-111 6-33 (113)
25 PF04536 TPM: TLP18.3, Psb32 a 23.0 92 0.002 22.4 2.8 21 90-110 2-22 (119)
26 PHA00440 host protein H-NS-int 22.4 1.8E+02 0.0038 22.3 4.2 40 64-103 15-55 (98)
27 COG3148 Uncharacterized conser 22.3 44 0.00096 29.0 1.1 77 48-128 65-143 (231)
28 PF02295 z-alpha: Adenosine de 22.1 1.1E+02 0.0025 21.1 3.0 40 70-110 2-49 (66)
29 PF07023 DUF1315: Protein of u 21.8 2.6E+02 0.0055 21.2 5.0 38 73-110 12-51 (93)
30 PF03724 META: META domain; I 21.4 2.6E+02 0.0056 19.4 4.8 15 118-132 1-15 (101)
31 KOG1513 Nuclear helicase MOP-3 21.4 1E+02 0.0022 32.3 3.5 34 68-106 774-807 (1300)
32 PF07813 LTXXQ: LTXXQ motif fa 21.2 1.2E+02 0.0025 21.1 3.0 31 81-111 6-36 (100)
33 PRK05244 Der GTPase activator; 21.2 1.3E+02 0.0028 25.3 3.5 41 69-109 99-141 (177)
34 KOG0421 Ubiquitin-protein liga 20.9 1.6E+02 0.0034 24.4 3.9 25 70-94 31-55 (175)
35 TIGR00741 yfiA ribosomal subun 20.3 1.1E+02 0.0024 21.5 2.7 28 84-111 6-33 (95)
36 PF15469 Sec5: Exocyst complex 20.1 1.6E+02 0.0035 23.4 3.9 40 69-115 136-175 (182)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.94 E-value=1.6e-26 Score=187.17 Aligned_cols=99 Identities=36% Similarity=0.614 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcC-CCCCceEEEEEecccccccc---cCCCCcccc
Q 030383 71 ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLLQT---KRPKFLRPN 146 (178)
Q Consensus 71 ~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~~P~~s-~lL~G~W~LvYTTs~~il~~---~rp~~l~~v 146 (178)
+++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++.+. +++++ ..+
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~-~~~ 79 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPG-VRV 79 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccc-ccc
Confidence 47899999999999999999999999999999999999999999998 99999999999999999954 45544 469
Q ss_pred cceEEEEECCCCeeEEEEecccch
Q 030383 147 GKIYQAINIDTLRAQNIETWPFFN 170 (178)
Q Consensus 147 G~I~Q~ID~~~~~v~N~v~fpf~n 170 (178)
|+|||+||.+++++.|+|+|..|+
T Consensus 80 ~~v~Q~id~~~~~~~N~v~~~~~~ 103 (198)
T PF04755_consen 80 GRVFQTIDADNGRVENVVELSGFP 103 (198)
T ss_pred cceEEEEECCCceEEEEEEEeccC
Confidence 999999999999999999976655
No 2
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=81.58 E-value=4.1 Score=28.67 Aligned_cols=20 Identities=5% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 030383 92 PEDQARVDQIARKLEAVNDIK 112 (178)
Q Consensus 92 ~~~r~~IeelI~qLEalNPt~ 112 (178)
++.+++|.++|.+|+ .||.+
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~ 36 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFK 36 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCC
Confidence 578899999999887 56653
No 3
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=71.41 E-value=16 Score=26.65 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCC----------CCCCCcC-------CCCCceEEEEEecc
Q 030383 78 FQAIKPLDRGAEASPEDQARVDQIARKLEAVND----------IKEPLKS-------NLLNGKWELLYTTS 131 (178)
Q Consensus 78 L~ai~gt~RG~~as~~~r~~IeelI~qLEalNP----------t~~P~~s-------~lL~G~W~LvYTTs 131 (178)
|+.+...++-....++-...+...+++|++..- -..++.. =-++|.|||+|.=.
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~~~~RliF~~~ 80 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRINGNWRLIFRFE 80 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeCCCEEEEEEEe
Confidence 444555554444556777777788888877531 1123332 23888899988644
No 4
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=60.37 E-value=12 Score=31.40 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCcCCCCCceEEEEEeccccc
Q 030383 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE-------------PLKSNLLNGKWELLYTTSQSL 134 (178)
Q Consensus 68 ~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~~-------------P~~s~lL~G~W~LvYTTs~~i 134 (178)
.+.++.|++|+..+..... ....+.++.+..++++|+....+.+ +...++|.|..+|..-..+..
T Consensus 53 ~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd~L~vP~rp~~ 130 (229)
T PF06251_consen 53 AEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGDRLYVPPRPNT 130 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEEEEE-----SE
T ss_pred HHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCcEEEECCCCCE
Confidence 4588888888888876665 5566788899999999988765442 112378999999999887765
Q ss_pred c
Q 030383 135 L 135 (178)
Q Consensus 135 l 135 (178)
.
T Consensus 131 V 131 (229)
T PF06251_consen 131 V 131 (229)
T ss_dssp E
T ss_pred E
Confidence 4
No 5
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=50.85 E-value=35 Score=27.70 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCcC-----CCCCc-eEEEEE
Q 030383 86 RGAEASPEDQARVDQIARKLEAVN---DIKEPLKS-----NLLNG-KWELLY 128 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEalN---Pt~~P~~s-----~lL~G-~W~LvY 128 (178)
|....++++++++.+.|.+|+..+ |...|-.+ +.=+| +||++.
T Consensus 5 ~~~~~~~~~~~~~~~~v~~ll~~G~I~~~~s~~~sp~~~V~Kk~g~~~R~~v 56 (210)
T cd03715 5 KQYPLPREAREGITPHIQELLEAGILVPCQSPWNTPILPVKKPGGNDYRMVQ 56 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeECCCCCCCCceEEEEeCCCCcceEEE
Confidence 456788999999999999999986 33233222 33488 999974
No 6
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=49.95 E-value=46 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCcC-CCC-CceEEEEEeccc
Q 030383 90 ASPEDQARVDQIARKLEAVNDIKEPLKS-NLL-NGKWELLYTTSQ 132 (178)
Q Consensus 90 as~~~r~~IeelI~qLEalNPt~~P~~s-~lL-~G~W~LvYTTs~ 132 (178)
.+++.+++|...+..|+..+|...+-.. .+= +|-|+|-.....
T Consensus 6 L~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 6 LPDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 3567889999999999988854332222 333 699999886654
No 7
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=45.38 E-value=32 Score=27.08 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=23.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 030383 83 PLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (178)
Q Consensus 83 gt~RG~~as~~~r~~IeelI~qLEalNPt~~P~~s~lL~G~W~L 126 (178)
.-.+....|++-++++++|+...|.+-+... +-|.|+|-.
T Consensus 33 ~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~----~~LFGewsI 72 (117)
T PF14834_consen 33 RGARKPPLSEAAQAAAQKLIAVAERLLADGG----PNLFGEWSI 72 (117)
T ss_dssp S--------HHHHHHHHHHHHHHHHHTTT------SSTTSS--H
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhccCC----CCccccchH
Confidence 3345677899999999999999999976433 459999954
No 8
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=41.76 E-value=66 Score=26.36 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC---CCCCCcC-----CCCCceEEEEE
Q 030383 86 RGAEASPEDQARVDQIARKLEAVND---IKEPLKS-----NLLNGKWELLY 128 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEalNP---t~~P~~s-----~lL~G~W~LvY 128 (178)
|....++++++++.+.|++|-..+- ...|-.+ +.=+|+||++.
T Consensus 5 ~~~p~~~~~~~~~~~~i~~ll~~g~I~~~~s~~~sp~~~v~K~~g~~R~~~ 55 (213)
T cd01645 5 KQWPLTEEKLEALTELVTEQLKEGHIEPSTSPWNTPVFVIKKKSGKWRLLH 55 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCceecCCCCCcCcEEEEEcCCCCeEEEe
Confidence 5677899999999999999988763 2233222 34589999984
No 9
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=41.58 E-value=51 Score=22.59 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcccCC-CCCCCH------HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEE
Q 030383 70 VESFKEELFQAIKPLDR-GAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELL 127 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~R-G~~as~------~~r~~IeelI~qLEalNPt~~P~~s~lL~G~W~Lv 127 (178)
.+..++++|..+..-+. |+.+.+ -.+..|.+++..||..+=.-. ..--.+.|++-
T Consensus 4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~---~~~~~~~W~i~ 65 (68)
T smart00550 4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK---QGGTPPLWKLT 65 (68)
T ss_pred chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe---cCCCCCceEee
Confidence 35678899999987654 566554 346789999999999875311 11233788874
No 10
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=39.02 E-value=39 Score=25.66 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 85 DRGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 85 ~RG~~as~~~r~~IeelI~qLEalNP 110 (178)
.||+..++++-++|++.|.+.+..+-
T Consensus 27 ~R~I~l~~~~~~~i~~av~~A~~KG~ 52 (96)
T TIGR02530 27 ERNISINPDDWKKLLEAVEEAESKGV 52 (96)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999999985
No 11
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=37.05 E-value=83 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=28.8
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 75 EELFQAIKPLDRGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 75 ~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNP 110 (178)
.+|++.-...-.-+..++++|+.+++.|.+-+..|-
T Consensus 13 ~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 13 QELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred HHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456655555555677899999999999999999984
No 12
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=35.79 E-value=1.1e+02 Score=20.98 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcccCC-CCCCCHHHHHHHHHHHHHHHhc
Q 030383 70 VESFKEELFQAIKPLDR-GAEASPEDQARVDQIARKLEAV 108 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~R-G~~as~~~r~~IeelI~qLEal 108 (178)
.--+|++||-+.+..+| |+-+-. ++|.....+||.+
T Consensus 5 ~tli~qellll~yelnrsgllven---e~i~~~l~~le~l 41 (56)
T PF12283_consen 5 TTLIKQELLLLTYELNRSGLLVEN---EEIQSQLKQLEKL 41 (56)
T ss_pred HHHHHHHHHHHHHHhccccccccc---HHHHHHHHHHHHH
Confidence 45679999999999998 777654 3566667777764
No 13
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=34.05 E-value=70 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 87 GAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 87 G~~as~~~r~~IeelI~qLEalNP 110 (178)
|...+..|+..|+++++++++-+-
T Consensus 37 GR~~~~~D~~~i~~i~~~~~~~~y 60 (76)
T PF07624_consen 37 GRPLEFSDRCEIDRIVEAFKANGY 60 (76)
T ss_pred CCCCCcchHHHHHHHHHHHHHcCC
Confidence 555557899999999999988663
No 14
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=33.40 E-value=1.1e+02 Score=20.26 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcC
Q 030383 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109 (178)
Q Consensus 69 e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalN 109 (178)
+..++|++|-+.... +++++.+.|++.+..|.+..
T Consensus 9 ~i~a~~e~l~~~~~~------lt~e~~~~l~~~~~al~~~~ 43 (64)
T PF12644_consen 9 EIMATKEELEELEER------LTKEDKKRLEEYIDALGARW 43 (64)
T ss_pred HHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHh
Confidence 466777777766554 89999999999999998764
No 15
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=32.45 E-value=69 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=13.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh
Q 030383 86 RGAEASPEDQARVDQIARKLEA 107 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEa 107 (178)
..-.+++++|+.+.++++++|+
T Consensus 15 ~~~~ld~~~~~~L~~l~~dIe~ 36 (85)
T PF14357_consen 15 QNPPLDEETRAELSSLDDDIEA 36 (85)
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666
No 16
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=27.88 E-value=11 Score=35.10 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHHHHhcCCCC--CCCcCCCCCceEEEEEecccccccc---c
Q 030383 69 RVESFKEELFQAIKPLD-----RGAEASPEDQARVDQIARKLEAVNDIK--EPLKSNLLNGKWELLYTTSQSLLQT---K 138 (178)
Q Consensus 69 e~~~lK~~LL~ai~gt~-----RG~~as~~~r~~IeelI~qLEalNPt~--~P~~s~lL~G~W~LvYTTs~~il~~---~ 138 (178)
|--+||++|+..|+..- ||...|..+-..|.+-.+.-|..++.. .|+..-.|.--|.=.|||...+... .
T Consensus 79 edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~ 158 (380)
T KOG1683|consen 79 EDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGG 158 (380)
T ss_pred hhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 34567777777766554 788888888888888888888888754 3555556777899999999877743 2
Q ss_pred CCCCcccccceEEEEECCCCeeEEEEecccchhhh
Q 030383 139 RPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQVI 173 (178)
Q Consensus 139 rp~~l~~vG~I~Q~ID~~~~~v~N~v~fpf~n~~~ 173 (178)
. +.|.+-=++----+-+.|..-+||++|+-
T Consensus 159 ~-----~~gk~~vvVg~c~gf~v~r~l~~y~~~~~ 188 (380)
T KOG1683|consen 159 S-----PAGKLPVVVGNCCGFRVNRLLPPYTIGLN 188 (380)
T ss_pred c-----ccCCccEEeccCCceEEEecccHHHHHHH
Confidence 2 23332222222235677877889998764
No 17
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=27.41 E-value=92 Score=25.43 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Q 030383 70 VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLE 106 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLE 106 (178)
...+++.|..+-.-+.|....+++++.++.++|+.|-
T Consensus 103 ~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR 139 (152)
T PF07278_consen 103 AKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLR 139 (152)
T ss_pred HHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5666777777777788999999999999999998774
No 18
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=26.39 E-value=61 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 030383 93 EDQARVDQIARKLEAVNDIKE 113 (178)
Q Consensus 93 ~~r~~IeelI~qLEalNPt~~ 113 (178)
.++.+|.+++..|..-+|.|.
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~ 43 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPE 43 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCc
Confidence 566778888888877444333
No 19
>PRK10470 ribosome hibernation promoting factor HPF; Provisional
Probab=25.66 E-value=66 Score=23.06 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=25.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030383 84 LDRGAEASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 84 t~RG~~as~~~r~~IeelI~qLEalNPt 111 (178)
+.|++..|+..|+.|++-+..||.+.+.
T Consensus 6 ~~r~i~~t~al~~~v~~kl~kL~r~~~~ 33 (95)
T PRK10470 6 TGHNVEITEALREFVTAKFAKLEQYFDR 33 (95)
T ss_pred EEEeeccCHHHHHHHHHHHHHHHHhcCC
Confidence 4688999999999999999999999873
No 20
>PHA00097 K protein K
Probab=24.99 E-value=2e+02 Score=19.58 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcccCC-CCCCCHHHHHHHHHHHHHHHhc
Q 030383 70 VESFKEELFQAIKPLDR-GAEASPEDQARVDQIARKLEAV 108 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~R-G~~as~~~r~~IeelI~qLEal 108 (178)
.--++++||-+.+..+| |+-+.. ++|.....+||.+
T Consensus 5 ttli~qelllltyelnrsgllven---eeiqs~lk~le~l 41 (56)
T PHA00097 5 TTLILQELLLLTYELNRSGLLVEN---EEIQSQLKKLEKL 41 (56)
T ss_pred hHHHHHHHHHHHHhhccccceecc---HHHHHHHHHHHHH
Confidence 44578999999999998 777654 3556666777763
No 21
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=24.64 E-value=1.2e+02 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 030383 67 TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE 113 (178)
Q Consensus 67 ~~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~~ 113 (178)
..++.+||++|-++|..-+ =|+.+.|.+-|..|++.|+..+
T Consensus 135 ~~~I~~L~e~Lq~~i~~Ee------fEeAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 135 KRKIIALKEALQDLIEREE------FEEAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcCCCC
Confidence 3558999999999998644 2788999999999999987543
No 22
>PLN03014 carbonic anhydrase
Probab=24.48 E-value=97 Score=28.54 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 030383 91 SPEDQARVDQIARKLEAVN 109 (178)
Q Consensus 91 s~~~r~~IeelI~qLEalN 109 (178)
.+...++|+++..+|+...
T Consensus 101 ~~~~~~~~~~~~~~l~~~~ 119 (347)
T PLN03014 101 KTVAAAKVEQITAALQTGT 119 (347)
T ss_pred chHHHHhHHHHHHHHhccc
Confidence 3466788999999998643
No 23
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=24.06 E-value=97 Score=20.01 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 030383 88 AEASPEDQARVDQIARKL 105 (178)
Q Consensus 88 ~~as~~~r~~IeelI~qL 105 (178)
-.++++.|++|.+++++|
T Consensus 24 ~~vs~~tr~rI~~~a~~l 41 (46)
T PF00356_consen 24 PRVSEETRERILEAAEEL 41 (46)
T ss_dssp SSSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 368899999999999887
No 24
>PRK10324 translation inhibitor protein RaiA; Provisional
Probab=23.60 E-value=82 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=25.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030383 84 LDRGAEASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 84 t~RG~~as~~~r~~IeelI~qLEalNPt 111 (178)
+.|++..|+.-|+.|++-+..|+.+.+.
T Consensus 6 tgr~v~~tdalr~~ie~Kl~kL~k~~~~ 33 (113)
T PRK10324 6 TSKQMEITPAIRQHVADRLAKLEKWQTH 33 (113)
T ss_pred EEEcCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999999999974
No 25
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=22.97 E-value=92 Score=22.40 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCC
Q 030383 90 ASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 90 as~~~r~~IeelI~qLEalNP 110 (178)
.|++++++|++.+.+||....
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~ 22 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTG 22 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHhhC
Confidence 478999999999999999876
No 26
>PHA00440 host protein H-NS-interacting protein
Probab=22.36 E-value=1.8e+02 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCchhh-HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH
Q 030383 64 GFSTKR-VESFKEELFQAIKPLDRGAEASPEDQARVDQIAR 103 (178)
Q Consensus 64 a~~~~e-~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~ 103 (178)
++...| -+.++++|+++..+...|-..++-||.-+.+.++
T Consensus 15 A~~~se~e~~~~e~l~~Lak~v~~GE~~~~~~re~lvqaLT 55 (98)
T PHA00440 15 AKMDSETEAILEEDILDLAKQAGAGEEVNPKDKELLVQALT 55 (98)
T ss_pred EEeChHHHHHHHHHHHHHHhhcCCcccCChHHHHHHHHHHh
Confidence 444444 6778999999999999999999999988776553
No 27
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=44 Score=29.05 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=42.9
Q ss_pred cCCCccccccccccccCCchhhHHHHHHHHHHHhcccCC-CCCCCH-HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEE
Q 030383 48 NSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDR-GAEASP-EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWE 125 (178)
Q Consensus 48 ~~~~~~~w~~~~s~~~a~~~~e~~~lK~~LL~ai~gt~R-G~~as~-~~r~~IeelI~qLEalNPt~~P~~s~lL~G~W~ 125 (178)
.+++..+|=.+.......+.-++-+.-.+|+++++.-+. -.-+-| +.-++.-+++..+ |..+|.--=+|||+|+
T Consensus 65 kpsNTgrliad~l~dt~a~~wsRte~~~eLl~ll~~P~~~p~lvfP~e~a~e~t~v~~~~----p~~k~plfIllDgTW~ 140 (231)
T COG3148 65 KPSNTGRLIADILADTRAFQWSRTEPNPELLALLANPDYQPYLVFPAEYAEELTEVISTA----PAEKPPLFILLDGTWR 140 (231)
T ss_pred CCCcchhHHHHhhhhhhhhhccccCCCHHHHHHHhCCCCceEEEcchHHHHHHHHHhhcc----cccCCceEEEecCccH
Confidence 344566666655554444555556667889999998884 222223 3333333333332 3334444467999997
Q ss_pred EEE
Q 030383 126 LLY 128 (178)
Q Consensus 126 LvY 128 (178)
=.|
T Consensus 141 eAr 143 (231)
T COG3148 141 EAR 143 (231)
T ss_pred HHH
Confidence 433
No 28
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=22.15 E-value=1.1e+02 Score=21.11 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHH--------HHHHHHHHHHHHHhcCC
Q 030383 70 VESFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVND 110 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~RG~~as~~--------~r~~IeelI~qLEalNP 110 (178)
.+++++.+|+.+...+ |..++.- .+.+|+.....||..+-
T Consensus 2 ~~~~ee~Il~~L~~~g-~~~a~~ia~~~~L~~~kk~VN~~LY~L~k~g~ 49 (66)
T PF02295_consen 2 MQDLEEKILDFLKELG-GSTATAIAKALGLSVPKKEVNRVLYRLEKQGK 49 (66)
T ss_dssp HHHHHHHHHHHHHHHT-SSEEEHHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHHHHHhcC-CccHHHHHHHhCcchhHHHHHHHHHHHHHCCC
Confidence 4678999999999998 7776651 27899999999999864
No 29
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.79 E-value=2.6e+02 Score=21.17 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccC--CCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 73 FKEELFQAIKPLD--RGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 73 lK~~LL~ai~gt~--RG~~as~~~r~~IeelI~qLEalNP 110 (178)
+=++|..+|+--. .|...|++||+--.++|-.-|+.+-
T Consensus 12 vY~rL~~AVElGKWpDG~~LT~eQre~~mQaVm~yq~~~n 51 (93)
T PF07023_consen 12 VYERLKQAVELGKWPDGRALTPEQRESCMQAVMLYQARHN 51 (93)
T ss_pred HHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3455666665433 6999999999999999999999984
No 30
>PF03724 META: META domain; InterPro: IPR005184 A domain found in proteins of unknown function [], some of which are described as heat shock protein (HslJ). In Helicobacter pylori (Campylobacter pylori) the protein is secreted e.g. (O25998 from SWISSPROT) and implicated in motility. In Leishmania spp. it is described as an essential protein, over-expression of which, in Leishmania amazonensis increases virulence (O43987 from SWISSPROT; []). A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond. ; PDB: 2KTS_A 2LA7_A.
Probab=21.39 E-value=2.6e+02 Score=19.41 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=10.2
Q ss_pred CCCCceEEEEEeccc
Q 030383 118 NLLNGKWELLYTTSQ 132 (178)
Q Consensus 118 ~lL~G~W~LvYTTs~ 132 (178)
+|.+|+|+|.+.+..
T Consensus 1 ~L~~~~W~l~~~~~~ 15 (101)
T PF03724_consen 1 PLQGGTWQLTSIDGD 15 (101)
T ss_dssp -TTTEEEEEEEE-SS
T ss_pred CccCCEEEEEEEecC
Confidence 578999999755433
No 31
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=21.37 E-value=1e+02 Score=32.26 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Q 030383 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLE 106 (178)
Q Consensus 68 ~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLE 106 (178)
+.++++|++||+.|..++|-+.+. .+++||++|-
T Consensus 774 er~~~mkeeLL~kverLg~~LP~N-----TLDqLIdelG 807 (1300)
T KOG1513|consen 774 ERVERMKEELLDKVERLGRELPPN-----TLDQLIDELG 807 (1300)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcc-----hHHHHHHHhC
Confidence 348889999999999999988874 4677888873
No 32
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=21.25 E-value=1.2e+02 Score=21.12 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=21.3
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030383 81 IKPLDRGAEASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 81 i~gt~RG~~as~~~r~~IeelI~qLEalNPt 111 (178)
+...-+.+..|++|++.+.++..++......
T Consensus 6 ~~~l~~~L~LT~eQ~~~~~~i~~~~~~~~~~ 36 (100)
T PF07813_consen 6 IDRLKEELNLTDEQKAKWRAIRQAMKAKMKP 36 (100)
T ss_dssp --STTTTS--THHHHHHHHHHHHHHCTTS--
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3445568899999999999999998877653
No 33
>PRK05244 Der GTPase activator; Provisional
Probab=21.16 E-value=1.3e+02 Score=25.28 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=30.8
Q ss_pred hHHHHH--HHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcC
Q 030383 69 RVESFK--EELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109 (178)
Q Consensus 69 e~~~lK--~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalN 109 (178)
|++.|. ..|-.++..++.|-..+.++++-|++-++++|++.
T Consensus 99 EL~~LEnD~rL~~LLdrLE~Ge~Ls~~dQ~yvD~~LdRie~LM 141 (177)
T PRK05244 99 ELEKLENDERLNALLDRLEAGETLSAEDQKWVDEKLDRIDELM 141 (177)
T ss_pred HHHHHhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 344443 45777778888899999999888888888777764
No 34
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=1.6e+02 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHH
Q 030383 70 VESFKEELFQAIKPLDRGAEASPED 94 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~RG~~as~~~ 94 (178)
..+|..||+.++.+.++|+.|-|+.
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~ 55 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPES 55 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCc
Confidence 6789999999999999999988754
No 35
>TIGR00741 yfiA ribosomal subunit interface protein. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes.
Probab=20.26 E-value=1.1e+02 Score=21.47 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=25.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030383 84 LDRGAEASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 84 t~RG~~as~~~r~~IeelI~qLEalNPt 111 (178)
+.|++..+++.++.|++-+..|+...+.
T Consensus 6 ~~~~~~~t~~l~~~i~~k~~kl~k~~~~ 33 (95)
T TIGR00741 6 TGKNVEITEALREYVEEKLARLERYFTH 33 (95)
T ss_pred EEeccccCHHHHHHHHHHHHHHHHhcCC
Confidence 3488999999999999999999999864
No 36
>PF15469 Sec5: Exocyst complex component Sec5
Probab=20.11 E-value=1.6e+02 Score=23.45 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 030383 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115 (178)
Q Consensus 69 e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~~P~ 115 (178)
-++..|..|.+.+...+ ....+..++|..|-.+++..+|.
T Consensus 136 ii~~~r~~l~~~L~~~~-------~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 136 IIEEFREKLWEKLLSPP-------SSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHhCCCCCCHH
Confidence 37888999999888766 45566788888888889888874
Done!