Query 030383
Match_columns 178
No_of_seqs 143 out of 294
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6s_A Toxin YOEB; YEFM, antit 79.9 4.3 0.00015 26.8 5.5 38 92-130 21-70 (84)
2 1z8m_A Conserved hypothetical 72.4 2.4 8.3E-05 28.4 2.6 35 96-130 25-71 (88)
3 3oei_C RELK (toxin RV3358); to 63.6 7.9 0.00027 27.8 3.9 20 91-111 32-51 (96)
4 3g5o_B Uncharacterized protein 60.9 10 0.00035 26.7 4.1 39 91-131 34-82 (102)
5 2khe_A Toxin RELE, toxin-like 55.2 21 0.00071 22.9 4.7 22 91-112 19-42 (89)
6 2otr_A Hypothetical protein HP 52.4 12 0.00043 25.4 3.3 13 96-108 25-37 (98)
7 2kvu_A MKL/myocardin-like prot 48.8 34 0.0012 23.9 5.0 40 67-112 28-67 (75)
8 3bpq_B Toxin RELE3; protein to 45.1 33 0.0011 22.0 4.4 18 91-108 17-34 (88)
9 3p42_A Predicted protein; beta 44.9 29 0.00099 28.4 4.9 67 67-135 51-130 (236)
10 1ug7_A 2610208M17RIK protein; 42.3 35 0.0012 26.2 4.6 41 67-107 39-79 (128)
11 1wmi_A RELE, hypothetical prot 36.4 36 0.0012 21.8 3.5 21 91-112 19-39 (90)
12 3vlc_E Golgi to ER traffic pro 35.5 31 0.0011 25.1 3.2 59 51-111 14-78 (94)
13 1qbj_A Protein (double-strande 34.2 75 0.0026 21.7 5.0 55 71-129 9-72 (81)
14 3sjb_C Golgi to ER traffic pro 34.1 40 0.0014 24.4 3.6 59 50-110 6-70 (93)
15 4fxi_A MRNA interferase RELE; 30.8 86 0.0029 21.9 4.9 42 91-133 19-69 (95)
16 2doa_A RNA polymerase II elong 30.2 33 0.0011 25.3 2.7 33 74-110 28-60 (104)
17 2heo_A Z-DNA binding protein 1 29.8 17 0.00059 23.6 1.0 52 70-126 8-65 (67)
18 1qgp_A Protein (double strande 26.7 83 0.0028 21.0 4.1 52 72-126 14-73 (77)
19 1use_A VAsp, vasodilator-stimu 26.6 1.2E+02 0.004 19.2 4.4 18 65-82 4-21 (45)
20 2e5n_A RNA polymerase II elong 22.6 73 0.0025 23.3 3.3 33 74-110 29-61 (100)
21 1ud0_A HSC70, 70 kDa heat-shoc 22.2 1.7E+02 0.0059 20.2 5.2 14 94-107 55-68 (113)
22 3op9_A PLI0006 protein; struct 21.7 1.3E+02 0.0045 20.4 4.5 22 90-111 93-114 (114)
23 3fsi_A RT, reverse transcripta 21.2 50 0.0017 26.3 2.4 44 86-129 39-91 (255)
24 1uxc_A FRUR (1-57), fructose r 20.0 1.4E+02 0.0048 19.3 4.1 27 79-105 19-45 (65)
No 1
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=79.88 E-value=4.3 Score=26.84 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-----CCCcCC-------CCCceEEEEEec
Q 030383 92 PEDQARVDQIARKLEAVNDIK-----EPLKSN-------LLNGKWELLYTT 130 (178)
Q Consensus 92 ~~~r~~IeelI~qLEalNPt~-----~P~~s~-------lL~G~W~LvYTT 130 (178)
....++|.++++.|+. ||-+ +++... .+.+.|+|+|.=
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~g~~~~~~L~g~~~g~~~~ri~~~yRiiY~i 70 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAV 70 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTSSTTCCEECCGGGTTCEEEESSSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHh-CCCCCCCCCeeccCCCCCEEEEEECCCeEEEEEE
Confidence 4557888999988865 6743 233321 244557777754
No 2
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=72.42 E-value=2.4 Score=28.37 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCCC-----CCCcC-------CCCCceEEEEEec
Q 030383 96 ARVDQIARKLEAVNDIK-----EPLKS-------NLLNGKWELLYTT 130 (178)
Q Consensus 96 ~~IeelI~qLEalNPt~-----~P~~s-------~lL~G~W~LvYTT 130 (178)
.++.++++.|...||-+ .|+.. =-++|.|+|+|.=
T Consensus 25 ~~~~~~i~~l~~~~p~~~~~~~~~L~G~~~g~~~~ri~~dyrliY~i 71 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLV 71 (88)
T ss_dssp HHHHHHHHHHTTSCCCCGGGCCEECSGGGTTSEECCSSTTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcccCCCCcccCCCCCeEEEEECCCEEEEEEE
Confidence 46788888886557643 24442 1356888888864
No 3
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=63.59 E-value=7.9 Score=27.82 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCC
Q 030383 91 SPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 91 s~~~r~~IeelI~qLEalNPt 111 (178)
.+..+.+|.++|.+|+ .||-
T Consensus 32 dk~~~krI~~~I~~l~-~nP~ 51 (96)
T 3oei_C 32 DRKTARRITRLIGEIQ-RDPF 51 (96)
T ss_dssp CHHHHHHHHHHHHHHH-HCTT
T ss_pred CHHHHHHHHHHHHHHH-hCCC
Confidence 3578899999999987 4773
No 4
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=60.90 E-value=10 Score=26.73 Aligned_cols=39 Identities=31% Similarity=0.551 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCC--CCCcCCCCC-------ceEEEEEecc
Q 030383 91 SPEDQARVDQIA-RKLEAVNDIK--EPLKSNLLN-------GKWELLYTTS 131 (178)
Q Consensus 91 s~~~r~~IeelI-~qLEalNPt~--~P~~s~lL~-------G~W~LvYTTs 131 (178)
.+..+.+|.+.| ..|+ .||.+ .|+... +. |.||++|+=.
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~~gk~L~g~-~~g~~r~Rig~yRiIY~i~ 82 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLRVGKPLRRE-LAGTFSARRGTYRLLYRID 82 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTTSSEECCGG-GTTCEEEECSSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHH-hCcccCCeeccCC-CceEEEEEeCCEEEEEEEe
Confidence 456788899998 8885 67753 234332 22 5666666543
No 5
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=55.20 E-value=21 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHH--hcCCCC
Q 030383 91 SPEDQARVDQIARKLE--AVNDIK 112 (178)
Q Consensus 91 s~~~r~~IeelI~qLE--alNPt~ 112 (178)
.++.+++|.+.|++|. ..||..
T Consensus 19 ~~~~~~~i~~~i~~l~~~~~~P~~ 42 (89)
T 2khe_A 19 DREVARRILRFLRERVATLEDPRS 42 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred CHHHHHHHHHHHHHhhccccCCCc
Confidence 3556777777777774 445643
No 6
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=52.37 E-value=12 Score=25.35 Aligned_cols=13 Identities=8% Similarity=0.095 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhc
Q 030383 96 ARVDQIARKLEAV 108 (178)
Q Consensus 96 ~~IeelI~qLEal 108 (178)
++|.++|+.|+..
T Consensus 25 ~~i~~~i~~L~~~ 37 (98)
T 2otr_A 25 KLLYKVVGNLATE 37 (98)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5788888888654
No 7
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=48.75 E-value=34 Score=23.86 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 030383 67 TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK 112 (178)
Q Consensus 67 ~~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~ 112 (178)
.-.+.+||++|-. ||+..+-...+-|++|.+.++..++.+
T Consensus 28 klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 28 DMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 3448888988764 898887667777888888877766543
No 8
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=45.08 E-value=33 Score=22.03 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 030383 91 SPEDQARVDQIARKLEAV 108 (178)
Q Consensus 91 s~~~r~~IeelI~qLEal 108 (178)
.+..+..+.++++.++.+
T Consensus 17 ~~~~~~~i~~~i~~~~~l 34 (88)
T 3bpq_B 17 PGHIRKRIKLIIEECQNS 34 (88)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 356677788888888765
No 9
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=44.91 E-value=29 Score=28.45 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCcCCCCCceEEEEEecccc
Q 030383 67 TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE-------------PLKSNLLNGKWELLYTTSQS 133 (178)
Q Consensus 67 ~~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNPt~~-------------P~~s~lL~G~W~LvYTTs~~ 133 (178)
..+.++.|++|++.+..... ....++.+.+..++++|+...++.. |...+.|.|...|..-..+.
T Consensus 51 ~~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n~~L~~gd~L~iP~r~~ 128 (236)
T 3p42_A 51 KAKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPV 128 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGSCBCCEEEEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCCCccCCCCEEEECCCCC
Confidence 45567788888888765442 2233677889999999999887552 22236799999998877665
Q ss_pred cc
Q 030383 134 LL 135 (178)
Q Consensus 134 il 135 (178)
..
T Consensus 129 tV 130 (236)
T 3p42_A 129 TI 130 (236)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 10
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=42.35 E-value=35 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHh
Q 030383 67 TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEA 107 (178)
Q Consensus 67 ~~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEa 107 (178)
.+|.+.|-.+|-..+..++|-...++++++-|..++.-||-
T Consensus 39 ~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~l 79 (128)
T 1ug7_A 39 IDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLEL 79 (128)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 36688888888889999988888889999999999988875
No 11
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=36.36 E-value=36 Score=21.76 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC
Q 030383 91 SPEDQARVDQIARKLEAVNDIK 112 (178)
Q Consensus 91 s~~~r~~IeelI~qLEalNPt~ 112 (178)
.+..+++|.+.++.|+. ||..
T Consensus 19 ~~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 19 PKAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCC
T ss_pred CHHHHHHHHHHHHHHHh-CCCC
Confidence 35667788888888854 5643
No 12
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=35.51 E-value=31 Score=25.08 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=34.3
Q ss_pred CccccccccccccCCchhhHHHHHHHHHHHhcccCCCCCCCH------HHHHHHHHHHHHHHhcCCC
Q 030383 51 VSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 51 ~~~~w~~~~s~~~a~~~~e~~~lK~~LL~ai~gt~RG~~as~------~~r~~IeelI~qLEalNPt 111 (178)
...+|-..+.++ +-.+.+...+|.+++++-...+ ...+.+ .-|..++.+.++||.+|-.
T Consensus 14 ~~~~~~~~v~p~-s~~~~~~~~lk~E~~~lk~E~~-stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~ 78 (94)
T 3vlc_E 14 YHEKWISKFAPG-NELSKKYLAKVKERHELKEFNN-SISAQDNYAKWTKNNRKLDSLDKEINNLKDE 78 (94)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHHHT-TSCTTTCHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHhCcc-cHhHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888776 6667778888888887665543 555544 3478899999999998753
No 13
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=34.16 E-value=75 Score=21.68 Aligned_cols=55 Identities=7% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcccCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCC-CCcCCCCCceEEEEEe
Q 030383 71 ESFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVNDIKE-PLKSNLLNGKWELLYT 129 (178)
Q Consensus 71 ~~lK~~LL~ai~gt~RG~~as~~--------~r~~IeelI~qLEalNPt~~-P~~s~lL~G~W~LvYT 129 (178)
.+..+++|+.+....-|-.++.. .|..|.+.+..||..+-... + . =.|.|++.-.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g--~--~~~~W~i~~~ 72 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA--G--TPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES--S--SSCEEEEC--
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC--C--CCCeeEEeCc
Confidence 44577788888866544444432 26789999999999775321 1 1 1389987643
No 14
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=34.08 E-value=40 Score=24.42 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=33.0
Q ss_pred CCccccccccccccCCchhhHHHHHHHHHHHhcccCCCCCCCH------HHHHHHHHHHHHHHhcCC
Q 030383 50 SVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVND 110 (178)
Q Consensus 50 ~~~~~w~~~~s~~~a~~~~e~~~lK~~LL~ai~gt~RG~~as~------~~r~~IeelI~qLEalNP 110 (178)
+..+.|...-.. .+-.+.+...+|.+++++-...+ ...+.+ .-|..++.+.++||.+|.
T Consensus 6 ~Yh~~wi~~l~~-~s~~a~~~~~lk~E~~~lk~E~~-stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 70 (93)
T 3sjb_C 6 KYHEKWISKFAP-GNELSKKYLAKVKERHELKEFNN-SISAQDNYAKWTKNNRKLDSLDKEINNLKD 70 (93)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHT-TSCTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcc-CcHhHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888722 25666778888888887665543 555554 347788999999999874
No 15
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=30.75 E-value=86 Score=21.92 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC--CCCcC-------CCCCceEEEEEecccc
Q 030383 91 SPEDQARVDQIARKLEAVNDIK--EPLKS-------NLLNGKWELLYTTSQS 133 (178)
Q Consensus 91 s~~~r~~IeelI~qLEalNPt~--~P~~s-------~lL~G~W~LvYTTs~~ 133 (178)
.+..+.+|.+.+++|. .||-+ +++.. -+=-|.||++|.=..+
T Consensus 19 d~~~~~ri~~~l~~l~-~nP~~~~k~L~g~~~~y~~RlRvg~YRiiy~i~d~ 69 (95)
T 4fxi_A 19 GSTVREQLKKKLVEVL-ESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDE 69 (95)
T ss_dssp CHHHHHHHHHHHHHHH-HSCCCGGGBCSSSTTEEEEECTTSCEEEEEEEEGG
T ss_pred CHHHHHHHHHHHHHHh-hCCCCcCccCcCCCCCCeEEEEeCCeEEEEEEECC
Confidence 4578889999999885 47743 23332 1235667888875544
No 16
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=30.15 E-value=33 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=26.1
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 74 KEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 74 K~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNP 110 (178)
|.+|+.-+. .+| ++..|++.|..++.+.-.+||
T Consensus 28 k~EL~~RL~--kdG--l~~~d~~~l~~iL~eVA~~~~ 60 (104)
T 2doa_A 28 KAELLLRLQ--KDG--LTQADKDALDGLLQQVANMSA 60 (104)
T ss_dssp HHHHHHHHH--HHC--CCHHHHHHHHHHHHHSSEECS
T ss_pred cHHHHHHHH--HcC--CCHHHHHHHHHHHHHHHhcCC
Confidence 455666665 356 678899999999999999997
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=29.84 E-value=17 Score=23.63 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcccCCCCCCCH------HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 030383 70 VESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (178)
Q Consensus 70 ~~~lK~~LL~ai~gt~RG~~as~------~~r~~IeelI~qLEalNPt~~P~~s~lL~G~W~L 126 (178)
..+.++++|+.+...++.+..++ -.|..|.++|..||..+-. .++ =.|.|+|
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I----~~~-~~G~y~l 65 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRV----SSP-SPKYWSI 65 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSE----EEE-ETTEEEE
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcE----ecC-CCceEee
Confidence 34567889999976444333322 2288999999999998753 221 2477875
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.70 E-value=83 Score=20.96 Aligned_cols=52 Identities=10% Similarity=0.342 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcccCCCCCCCHHH--------HHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 030383 72 SFKEELFQAIKPLDRGAEASPED--------QARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (178)
Q Consensus 72 ~lK~~LL~ai~gt~RG~~as~~~--------r~~IeelI~qLEalNPt~~P~~s~lL~G~W~L 126 (178)
+..+++|+++.....|-.++..+ +..|...+..||..+-...--. =.|.|++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~---~~~~W~i 73 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS---SSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCceEe
Confidence 44577888888777554444322 6789999999999774311001 1288886
No 19
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.56 E-value=1.2e+02 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.7
Q ss_pred CchhhHHHHHHHHHHHhc
Q 030383 65 FSTKRVESFKEELFQAIK 82 (178)
Q Consensus 65 ~~~~e~~~lK~~LL~ai~ 82 (178)
+...+.+.+|+++|+-+.
T Consensus 4 ~~~~dle~~KqEIL~E~R 21 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVK 21 (45)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 445778899999987664
No 20
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.57 E-value=73 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=25.8
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 74 KEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 74 K~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNP 110 (178)
|.+|+.-+. .+| +++.|++.|..++.+.-.+||
T Consensus 29 kpEL~~RL~--kdG--l~~~d~~~l~~iL~eVa~~~~ 61 (100)
T 2e5n_A 29 KPELLARLQ--KDG--VNQKDKNSLGAILQQVANLNS 61 (100)
T ss_dssp HHHHHHHHH--HHC--CCHHHHHHHHHHHHHHEEEET
T ss_pred cHHHHHHHH--Hcc--CCHHHHHHHHHHHHHHHhcCC
Confidence 455666555 346 578899999999999999987
No 21
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=22.17 E-value=1.7e+02 Score=20.23 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHh
Q 030383 94 DQARVDQIARKLEA 107 (178)
Q Consensus 94 ~r~~IeelI~qLEa 107 (178)
+..+|.+.+.+|+.
T Consensus 55 d~~~i~~~~~~L~~ 68 (113)
T 1ud0_A 55 EKEEFEHQQKELEK 68 (113)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555554
No 22
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.70 E-value=1.3e+02 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCC
Q 030383 90 ASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 90 as~~~r~~IeelI~qLEalNPt 111 (178)
.++++++.|.++++.++.+.|+
T Consensus 93 ~~~~~~~~i~~~i~~i~~~~pn 114 (114)
T 3op9_A 93 RSEEEIAKIKILVDTVETLYPN 114 (114)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 6789999999999999998763
No 23
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=21.20 E-value=50 Score=26.33 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCC---CCCCcCCC-----C-CceEEEEEe
Q 030383 86 RGAEASPEDQARVDQIARKLEAVNDI---KEPLKSNL-----L-NGKWELLYT 129 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEalNPt---~~P~~s~l-----L-~G~W~LvYT 129 (178)
|-...+++++++|.+.|.+|+..+-. ..|-.++. = .|+||++.-
T Consensus 39 ~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~sp~~sp~~~V~Kk~~g~~R~~~D 91 (255)
T 3fsi_A 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQD 91 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTSEEEECCSCBCCBCCC-------CCCCBC
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCeEEecCCCeECceeEeecCCCCceeEEeE
Confidence 34567788999999999999887632 12222222 2 499998654
No 24
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.03 E-value=1.4e+02 Score=19.25 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=19.0
Q ss_pred HHhcccCCCCCCCHHHHHHHHHHHHHH
Q 030383 79 QAIKPLDRGAEASPEDQARVDQIARKL 105 (178)
Q Consensus 79 ~ai~gt~RG~~as~~~r~~IeelI~qL 105 (178)
..+.|.......+++.+++|.+++++|
T Consensus 19 rvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 19 YVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 344443322368899999999999877
Done!