Query 030383
Match_columns 178
No_of_seqs 143 out of 294
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 20:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030383.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030383hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 59.6 3.7 0.00027 34.7 4.0 43 86-128 20-73 (427)
2 d2q22a1 d.365.1.1 (A:8-138) Un 33.8 25 0.0018 25.0 4.5 56 65-122 23-81 (131)
3 d1t6sa1 a.4.5.60 (A:1-85) Segr 26.6 42 0.003 21.3 4.3 33 93-128 40-72 (85)
4 d2ywqa1 d.204.1.1 (A:1-95) Rib 24.1 19 0.0014 23.0 2.1 28 84-111 7-34 (95)
5 d1qpza1 a.35.1.5 (A:2-58) Puri 23.9 28 0.0021 21.1 2.8 17 89-105 26-42 (57)
6 d2hsga1 a.35.1.5 (A:2-58) Gluc 23.0 30 0.0022 20.9 2.8 18 89-106 27-44 (57)
7 d1mkma1 a.4.5.33 (A:1-75) Tran 22.5 26 0.0019 21.7 2.5 46 76-126 9-60 (75)
8 d1noga_ a.25.2.2 (A:) Hypothet 22.2 74 0.0054 22.5 5.4 43 68-110 31-76 (149)
9 d1ztwa1 e.8.1.2 (A:24-278) MML 21.5 28 0.002 26.4 2.9 43 86-128 39-90 (255)
10 d1imua_ d.204.1.1 (A:) Ribosom 21.0 62 0.0045 20.9 4.4 28 84-111 6-33 (107)
11 d2ov9a1 d.38.1.5 (A:7-209) Hyp 20.9 80 0.0058 23.1 5.5 43 68-110 22-64 (203)
12 d1hara_ e.8.1.2 (A:) HIV-1 rev 20.7 43 0.0031 25.0 3.9 43 86-128 22-75 (216)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=59.58 E-value=3.7 Score=34.67 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCcCCCC-----C-ceEEEEE
Q 030383 86 RGAEASPEDQARVDQIARKLEAVNDI-----KEPLKSNLL-----N-GKWELLY 128 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEalNPt-----~~P~~s~lL-----~-G~W~LvY 128 (178)
|--..+++++++|.++|++|+..+-. ..|-.++.+ + |+||++-
T Consensus 20 kq~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 20 RQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 44568999999999999999998743 234444332 4 9999974
No 2
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=33.79 E-value=25 Score=24.98 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=36.4
Q ss_pred CchhhHHHHHHHHHHHhcccCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCc
Q 030383 65 FSTKRVESFKEELFQAIKPLDR---GAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNG 122 (178)
Q Consensus 65 ~~~~e~~~lK~~LL~ai~gt~R---G~~as~~~r~~IeelI~qLEalNPt~~P~~s~lL~G 122 (178)
....+++.++++|...+...|+ |+.|...+. +| ++++++|..-.-+.+++.+-.+|
T Consensus 23 Ls~~q~~~L~~eL~~~~~~adw~tiGImA~s~~~-Ai-~ALrs~~~~~~~~~~~d~~~~~G 81 (131)
T d2q22a1 23 LKPSEKESVRRALILITKLSDYQILGICADTADE-GL-LAMKTYSHALGYEVPIDLPVVEG 81 (131)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSEEEEEEEESSHHH-HH-HHHHHHHHHTTCCCC-CCCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCHHH-HH-HHHHHHHHHhCCCccCCCCCCCC
Confidence 4567899999999999999996 999865443 33 44555555444444444443444
No 3
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=26.64 E-value=42 Score=21.26 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEEE
Q 030383 93 EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLY 128 (178)
Q Consensus 93 ~~r~~IeelI~qLEalNPt~~P~~s~lL~G~W~LvY 128 (178)
+-++.|+++..+.+..| .+..--.+.|.|++.-
T Consensus 40 ~i~~~l~~L~~~y~~~~---~g~el~~~~~gy~~~t 72 (85)
T d1t6sa1 40 ELQEAVDELNRDYEATG---RTFRIHAIAGGYRFLT 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHT---CSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCC---CcEEEEEECCEEEEEE
Confidence 34666666666666554 3555556889999863
No 4
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=24.09 E-value=19 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030383 84 LDRGAEASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 84 t~RG~~as~~~r~~IeelI~qLEalNPt 111 (178)
++|++.+|+.-|+.|++-+..|+...+.
T Consensus 7 tgr~~~lt~al~~~ve~kl~kL~k~~~~ 34 (95)
T d2ywqa1 7 IGRNLEITDAIRDYVEKKLARLDRYQDG 34 (95)
T ss_dssp EEETSCCCHHHHHHHHHHHHGGGGSCSS
T ss_pred EEECCccCHHHHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999999998763
No 5
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.89 E-value=28 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHH
Q 030383 89 EASPEDQARVDQIARKL 105 (178)
Q Consensus 89 ~as~~~r~~IeelI~qL 105 (178)
.++++.|++|.+++++|
T Consensus 26 ~vs~~tr~rV~~~a~~l 42 (57)
T d1qpza1 26 FVAEETRNAVWAAIKEL 42 (57)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 47899999999999887
No 6
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=23.00 E-value=30 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 030383 89 EASPEDQARVDQIARKLE 106 (178)
Q Consensus 89 ~as~~~r~~IeelI~qLE 106 (178)
..+++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999883
No 7
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.48 E-value=26 Score=21.65 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=32.8
Q ss_pred HHHHHhcccCCCCCCCH------HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 030383 76 ELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (178)
Q Consensus 76 ~LL~ai~gt~RG~~as~------~~r~~IeelI~qLEalNPt~~P~~s~lL~G~W~L 126 (178)
++|+.++..++++..++ -.+..+-+++..||..+=. ..+- +|+|+|
T Consensus 9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l----~~~~-~g~y~l 60 (75)
T d1mkma1 9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFV----LRKK-DKRYVP 60 (75)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSE----EECT-TSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE----EECC-CCCEee
Confidence 57888888888877655 3378899999999998742 2222 577665
No 8
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=22.22 E-value=74 Score=22.45 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHhccc---CCCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 68 KRVESFKEELFQAIKPL---DRGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 68 ~e~~~lK~~LL~ai~gt---~RG~~as~~~r~~IeelI~qLEalNP 110 (178)
.....+.++|.++-+.. +.+...++++-+.+|+.|++++..-|
T Consensus 31 ~~L~~IQ~~Lf~lga~lA~~~~~~~i~~~~v~~LE~~id~~~~~lp 76 (149)
T d1noga_ 31 NDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEIG 76 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHhcccccccccHHHHHHHHHHHHHHHhhhc
Confidence 33666777777665433 45678999999999999999998776
No 9
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=21.47 E-value=28 Score=26.35 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCC---CCCCcCC-----CC-CceEEEEE
Q 030383 86 RGAEASPEDQARVDQIARKLEAVNDI---KEPLKSN-----LL-NGKWELLY 128 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEalNPt---~~P~~s~-----lL-~G~W~LvY 128 (178)
|-...++++++++.+.|++|...+-. ..|-.++ .= .|+||++-
T Consensus 39 ~~~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEee
Confidence 45567899999999999999988632 2232232 22 47899986
No 10
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=21.01 E-value=62 Score=20.90 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=25.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030383 84 LDRGAEASPEDQARVDQIARKLEAVNDI 111 (178)
Q Consensus 84 t~RG~~as~~~r~~IeelI~qLEalNPt 111 (178)
+.|++..|+.-++.|++-+..|+...+.
T Consensus 6 ~~r~~~lt~al~~~i~~kl~kl~k~~~~ 33 (107)
T d1imua_ 6 TSKQMDITPAIREHLEERLAKLGKWQTQ 33 (107)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHTSSCC
T ss_pred EEEcCcCCHHHHHHHHHHHHHHHhhCCC
Confidence 5689999999999999999999998763
No 11
>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=20.87 E-value=80 Score=23.06 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 030383 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVND 110 (178)
Q Consensus 68 ~e~~~lK~~LL~ai~gt~RG~~as~~~r~~IeelI~qLEalNP 110 (178)
....+.-++|.+++..++-+-..-.+-+++|++++++|+...+
T Consensus 22 ~r~~~a~R~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 64 (203)
T d2ov9a1 22 DRATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLEEHAP 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455667789999999998888888899999999999998765
No 12
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=20.69 E-value=43 Score=25.04 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCC-----CCCcCCC-----CCc-eEEEEE
Q 030383 86 RGAEASPEDQARVDQIARKLEAVNDIK-----EPLKSNL-----LNG-KWELLY 128 (178)
Q Consensus 86 RG~~as~~~r~~IeelI~qLEalNPt~-----~P~~s~l-----L~G-~W~LvY 128 (178)
+-...+++++++|.+.|++|+..+-.. .|-.++. =+| +||++-
T Consensus 22 k~ypl~~~~~~~l~~~i~~ll~~G~I~~~~s~s~~~sPv~~v~Kk~g~k~R~~v 75 (216)
T d1hara_ 22 AQWPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWAKLV 75 (216)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTSEEECCTTCCCBCCEEEC-------CCEEE
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCcEEECCCCCCCcceEEEEEeCCCCcceeec
Confidence 445688899999999999999986432 2333332 356 699873
Done!