BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030388
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5XZ32|RL31_KLEP3 50S ribosomal protein L31 OS=Klebsiella pneumoniae (strain 342)
GN=rpmE PE=3 SV=1
Length = 70
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN-----VGKVY-HFRARRQMAQSIGQVAKF 163
MKKG+HP+ + I+ G +M + T H+ GK + F +++ + G+V +F
Sbjct: 1 MKKGIHPKYEEITATCSCGNVMKIRSTVGHDLNLDVCGKCHPFFTGKQRDVATGGRVDRF 60
Query: 164 RRRY 167
+R+
Sbjct: 61 NKRF 64
>sp|B3R0G4|RL31_PHYMT 50S ribosomal protein L31 OS=Phytoplasma mali (strain AT) GN=rpmE
PE=3 SV=1
Length = 69
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQMAQSI-GQVAKF 163
MKK LHP ++ I V + + HV+ T + N+ + F +Q ++ G+V KF
Sbjct: 1 MKKKLHPILKKIPLVCATCKKQHVIDTTVENIHIEICANCHPFYVGKQNFTTVAGRVDKF 60
Query: 164 RRRYEQQL 171
+RY+ ++
Sbjct: 61 NKRYQNKV 68
>sp|A6TGC6|RL31_KLEP7 50S ribosomal protein L31 OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpmE PE=3
SV=1
Length = 70
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN-----VGKVY-HFRARRQMAQSIGQVAKF 163
MKKG+HP I+ G +M + T H+ GK + F +++ + G+V +F
Sbjct: 1 MKKGIHPNYDEITATCSCGNVMKIRSTVGHDLNLDVCGKCHPFFTGKQRDVATGGRVDRF 60
Query: 164 RRRY 167
+R+
Sbjct: 61 NKRF 64
>sp|B8DZZ9|RL31_DICTD 50S ribosomal protein L31 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rpmE PE=3 SV=1
Length = 68
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHNVGKVY-HFRARRQMAQSIGQVAKFR 164
MKKG+HP+++ V G + + TK + K + F +R+ + G+V +F
Sbjct: 1 MKKGIHPELKKAKIVCACGAVYETLSTKEYMTVEICSKCHPFFTGQRKFVDTEGRVERFT 60
Query: 165 RRYEQQL 171
++Y ++
Sbjct: 61 KKYNWEI 67
>sp|Q0VMB0|RL31_ALCBS 50S ribosomal protein L31 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rpmE PE=3 SV=1
Length = 72
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHNVGKVYH--FRARRQMAQSIGQVAKF 163
MK +HP Q +Y G ++ TK +V H + +++ A S GQ+ KF
Sbjct: 1 MKAEIHPDYQTATYTCSCGNVIETRSTKGGDMALDVCSACHPFYTGKQKQADSGGQIDKF 60
Query: 164 RRRY 167
++R+
Sbjct: 61 KQRF 64
>sp|B2S2K3|RL31_TREPS 50S ribosomal protein L31 OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN----VGKVYH--FRARRQMAQSIGQVAKF 163
MKKGLHP+ + V G ++ V + + + + H F ++++ S G++ +F
Sbjct: 1 MKKGLHPRYEETKVVCACGNVI-VTASTVKDLRVEICSACHPFFTGKQKLVDSAGRIDRF 59
Query: 164 RRRYE 168
RRY+
Sbjct: 60 NRRYK 64
>sp|O66075|RL31_TREPA 50S ribosomal protein L31 OS=Treponema pallidum (strain Nichols)
GN=rpmE PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN----VGKVYH--FRARRQMAQSIGQVAKF 163
MKKGLHP+ + V G ++ V + + + + H F ++++ S G++ +F
Sbjct: 1 MKKGLHPRYEETKVVCACGNVI-VTASTVKDLRVEICSACHPFFTGKQKLVDSAGRIDRF 59
Query: 164 RRRYE 168
RRY+
Sbjct: 60 NRRYK 64
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 33.5 bits (75), Expect = 0.73, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 98 LRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSI 157
++NS + H L +++ L Q+ I V Q + +IH +GK+ A++ +A I
Sbjct: 1 MKNSSVKHTLTPLQQSLFSQLNDIMLVDQ-----RRLSARIHGIGKIKSQEAQQAVAAEI 55
Query: 158 -GQVAKFRRRYEQQLDAENN 176
Q+ + R R EQ+ A N
Sbjct: 56 QQQIEQARLRVEQRKSAVQN 75
>sp|B5YDA8|RL31_DICT6 50S ribosomal protein L31 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rpmE PE=3 SV=1
Length = 68
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHNVGKVY-HFRARRQMAQSIGQVAKFR 164
MKKG+HP+++ V G + + TK + K + F +R+ + G+V +F
Sbjct: 1 MKKGIHPELKKARIVCACGAVYETLSTKEYMTVEICSKCHPFFTGQRKFVDTEGRVERFA 60
Query: 165 RRYEQQL 171
++Y ++
Sbjct: 61 KKYNWEI 67
>sp|B1LAZ7|RL31_THESQ 50S ribosomal protein L31 OS=Thermotoga sp. (strain RQ2) GN=rpmE
PE=3 SV=1
Length = 71
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHF-----RARRQMAQSIGQ 159
MKKG+HP+M+ ++ G H T + N+ K + F + + + G+
Sbjct: 1 MKKGIHPEMKLVTVKCACG-AEHTFYTTVDNIRIDVCSKCHPFYTSGGKGGVLIVDTEGR 59
Query: 160 VAKFRRRY 167
V KFRR+Y
Sbjct: 60 VEKFRRKY 67
>sp|Q6X4W1|NELF_HUMAN Nasal embryonic luteinizing hormone-releasing hormone factor
OS=Homo sapiens GN=NELF PE=1 SV=1
Length = 530
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 21 LASSPTPASFPLNFSHLSNKPPSISGRRRK------------PLAAVTWLPKSPVFSLFA 68
LA PTP +F L+ L P SGRR+K + TW PK +FS
Sbjct: 173 LAPGPTPRAFGLDQPPL----PETSGRRKKLERMYSVDRVSDDIPIRTWFPKENLFSFQT 228
Query: 69 GTCVLILFSIGTYYYE 84
T + S+ Y E
Sbjct: 229 ATTTMQAISVFRGYAE 244
>sp|Q8J207|ERG3_LEPMC C-5 sterol desaturase OS=Leptosphaeria maculans GN=ERG3 PE=3 SV=1
Length = 356
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 31 PLNFSHLSNKPPSISGRRRKPLAAVTWLPKSPVFSLFAGTCVLILFSIGTYYYELHVRSS 90
P ++++S+ P R+ L +TWL V+ LFAG L++F T+ + +++
Sbjct: 68 PSKYAYMSSWPRDDWRRQALTLYLITWLFGVCVYYLFAGLSYLLVFDKATFNHPRYLKHQ 127
Query: 91 LK 92
+K
Sbjct: 128 IK 129
>sp|Q7VRL2|RL31_BLOFL 50S ribosomal protein L31 OS=Blochmannia floridanus GN=rpmE PE=3
SV=1
Length = 73
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVG 142
MKK +HPQ IS G ++HV T HN+
Sbjct: 1 MKKNIHPQYNVISASCSCGNVIHVRSTLKHNIN 33
>sp|B8D897|RL31_BUCAT 50S ribosomal protein L31 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rpmE PE=3 SV=1
Length = 72
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 163
MKK +HP+ I+ G ++ + T HN+ K + F +Q + + G+V +F
Sbjct: 1 MKKKIHPRYSKITATCSCGNIIEIFSTINHNINLDICAKCHPFYTGKQRVIDTGGRVERF 60
Query: 164 RRRYE 168
++R++
Sbjct: 61 KKRFK 65
>sp|B8E7D2|OPGH_SHEB2 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS223) GN=opgH PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A9KZ13|OPGH_SHEB9 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS195) GN=opgH PE=3 SV=1
Length = 727
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A6WMM7|OPGH_SHEB8 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS185) GN=opgH PE=3 SV=1
Length = 727
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A3D3U0|OPGH_SHEB5 Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=opgH PE=3 SV=1
Length = 727
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A1RJC2|OPGH_SHESW Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain W3-18-1) GN=opgH PE=3 SV=1
Length = 727
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A4Y768|OPGH_SHEPC Glucans biosynthesis glucosyltransferase H OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=opgH PE=3
SV=1
Length = 727
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|P57639|RL31_BUCAI 50S ribosomal protein L31 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpmE PE=3 SV=1
Length = 72
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 163
MKK +HP+ I+ G ++ + T HN+ K + F +Q + + G+V +F
Sbjct: 1 MKKKIHPRYSKITATCSCGNIIEIFSTINHNLNLDICAKCHPFYTGKQRVIDTGGRVERF 60
Query: 164 RRRYE 168
++R++
Sbjct: 61 KKRFK 65
>sp|B8D8E0|RL31_BUCA5 50S ribosomal protein L31 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rpmE PE=3 SV=1
Length = 72
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNV-----GKVYHFRARRQ-MAQSIGQVAKF 163
MKK +HP+ I+ G ++ + T HN+ K + F +Q + + G+V +F
Sbjct: 1 MKKKIHPRYSKITATCSCGNIIEIFSTINHNLNLDICAKCHPFYTGKQRVIDTGGRVERF 60
Query: 164 RRRYE 168
++R++
Sbjct: 61 KKRFK 65
>sp|Q8EF78|OPGH_SHEON Glucans biosynthesis glucosyltransferase H OS=Shewanella oneidensis
(strain MR-1) GN=opgH PE=3 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|A0KWF0|OPGH_SHESA Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain ANA-3) GN=opgH PE=3 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q0HUS0|OPGH_SHESR Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain MR-7) GN=opgH PE=3 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
>sp|Q0HJ63|OPGH_SHESM Glucans biosynthesis glucosyltransferase H OS=Shewanella sp.
(strain MR-4) GN=opgH PE=3 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 133 VMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLD 172
V+ + H +VY+ R R+ +A+ G VA F RR+ + D
Sbjct: 191 VLRQETHKHSRVYYRRRRKNVARKAGNVADFCRRWGSRYD 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,986,266
Number of Sequences: 539616
Number of extensions: 2608880
Number of successful extensions: 7180
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7161
Number of HSP's gapped (non-prelim): 35
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)