Query 030388
Match_columns 178
No_of_seqs 10 out of 12
Neff 1.2
Searched_HMMs 46136
Date Fri Mar 29 12:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00105 L31 ribosomal protei 98.7 4.9E-09 1.1E-13 72.6 1.3 58 110-168 1-66 (68)
2 PF01197 Ribosomal_L31: Riboso 98.5 6.9E-10 1.5E-14 76.7 -7.4 59 110-169 1-68 (69)
3 PRK00528 rpmE 50S ribosomal pr 97.8 1E-05 2.2E-10 56.6 1.9 58 110-168 1-69 (71)
4 PRK01397 50S ribosomal protein 97.4 7.4E-05 1.6E-09 53.9 1.4 60 110-170 1-69 (78)
5 PRK00019 rpmE 50S ribosomal pr 97.3 9.1E-05 2E-09 52.5 1.4 62 110-171 1-69 (72)
6 CHL00136 rpl31 ribosomal prote 97.2 0.00015 3.3E-09 50.9 1.6 54 110-168 2-66 (68)
7 PRK01678 rpmE2 50S ribosomal p 97.2 0.00017 3.6E-09 53.0 1.8 62 110-171 1-82 (87)
8 COG0254 RpmE Ribosomal protein 96.7 0.00091 2E-08 48.4 1.6 62 110-171 1-71 (75)
9 PF02762 Cbl_N3: CBL proto-onc 56.7 8.1 0.00018 29.3 1.9 15 119-133 39-54 (86)
10 PF02416 MttA_Hcf106: mttA/Hcf 50.2 25 0.00054 23.2 3.2 26 151-176 23-49 (53)
11 PF14828 Amnionless: Amnionles 48.9 77 0.0017 28.4 7.0 84 68-163 225-313 (437)
12 smart00449 SPRY Domain in SPla 43.7 15 0.00033 24.5 1.5 11 79-89 2-12 (122)
13 PF04536 TPM: TLP18.3, Psb32 a 33.3 63 0.0014 21.6 3.2 46 68-113 56-102 (119)
14 PF08460 SH3_5: Bacterial SH3 32.6 27 0.00058 23.7 1.3 12 118-129 48-59 (65)
15 PF14026 DUF4242: Protein of u 30.8 40 0.00087 23.3 1.9 14 116-129 32-46 (77)
16 cd00890 Prefoldin Prefoldin is 29.2 65 0.0014 22.2 2.8 26 74-99 71-97 (129)
17 KOG1123 RNA polymerase II tran 27.8 38 0.00083 33.4 1.8 23 145-167 616-638 (776)
18 cd01274 AIDA-1b AIDA-1b Phosph 26.2 1.5E+02 0.0032 22.2 4.4 17 151-169 109-125 (127)
19 COG2943 MdoH Membrane glycosyl 26.1 33 0.00071 33.8 1.1 33 138-170 208-240 (736)
20 cd07429 Cby_like Chibby, a nuc 24.3 63 0.0014 24.8 2.1 39 122-176 51-89 (108)
21 PF11368 DUF3169: Protein of u 24.1 39 0.00085 26.9 1.1 22 156-177 68-89 (248)
22 cd01267 CED6_AIDA1b Phosphotyr 23.5 2.1E+02 0.0046 20.6 4.7 17 151-169 114-130 (132)
23 PTZ00044 ubiquitin; Provisiona 22.9 2E+02 0.0042 18.3 4.0 39 80-131 12-50 (76)
24 PRK04439 S-adenosylmethionine 22.6 36 0.00079 31.2 0.7 19 138-157 308-326 (399)
25 PF10989 DUF2808: Protein of u 22.4 2.6E+02 0.0057 20.8 5.1 42 48-89 75-129 (146)
26 cd01805 RAD23_N Ubiquitin-like 22.1 2.2E+02 0.0047 18.0 4.2 39 80-131 12-52 (77)
27 PRK14011 prefoldin subunit alp 21.4 95 0.0021 24.2 2.7 26 74-99 72-98 (144)
28 KOG2859 DNA repair protein, me 21.3 51 0.0011 29.5 1.3 39 69-107 154-201 (293)
29 COG1187 RsuA 16S rRNA uridine- 20.6 19 0.00042 30.3 -1.4 35 121-155 114-148 (248)
30 PF00622 SPRY: SPRY domain; I 20.5 82 0.0018 20.7 1.9 12 79-90 2-13 (124)
31 PF01941 AdoMet_Synthase: S-ad 20.3 41 0.00088 30.8 0.5 20 137-157 307-326 (396)
32 KOG1106 Uncharacterized conser 20.3 38 0.00082 28.2 0.3 32 68-99 88-131 (177)
No 1
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=98.70 E-value=4.9e-09 Score=72.64 Aligned_cols=58 Identities=21% Similarity=0.393 Sum_probs=45.7
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeehheec------cc--ceeehhhhhHHHHHHhHHHHHHHHHH
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHN------VG--KVYHFRARRQMAQSIGQVAKFRRRYE 168 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMtkihh------vG--kVYH~rAkRQMAqSlGQiAKFkRRy~ 168 (178)
|||||||+.++|.++...|..+-++.|+-.. -. -.+.-. ++++.++-|+|+||++||+
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~f~~~ST~~~~~i~vdi~s~~HPfyTG-~~~~~~~~GRv~KF~kry~ 66 (68)
T TIGR00105 1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKETLNLDICSKCHPFYTG-KQKIVDTGGRVDKFNKKFG 66 (68)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEeeecCCceEEEEECCCCcccCCC-ceEEeccCCcHHHHHHHhc
Confidence 8999999999999999999999988886321 00 012222 5678899999999999996
No 2
>PF01197 Ribosomal_L31: Ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3D5D_4 3PYO_1 3D5B_4 3PYV_1 3PYT_1 3MRZ_1 3MS1_1 3PYR_1 3F1F_4 3F1H_4 ....
Probab=98.50 E-value=6.9e-10 Score=76.70 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=40.4
Q ss_pred HhhcCCccceeeEEeec---------cCeeeeeeehheecccceeehhhhhHHHHHHhHHHHHHHHHHH
Q 030388 110 MKKGLHPQMQWISYVTQ---------SGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQ 169 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQ---------sGRLmhvMMtkihhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q 169 (178)
|||||||+++++.++.. |..-..+|.--|+.---.+.-. ++++.++-|+|+||++||+.
T Consensus 1 MKk~IHP~y~~v~v~c~s~g~~~~~~St~~~~~~~vdi~s~~HPfytG-~~~~~~~~Grv~KF~kkf~~ 68 (69)
T PF01197_consen 1 MKKGIHPEYREVKVTCSSCGNTFETRSTKEYPVIKVDICSNCHPFYTG-KQKVVDTAGRVEKFNKKFGK 68 (69)
T ss_dssp --SSTSSSHCEEEEEES-SSSCECECSSSSES-EEECSCSSSSCTTCS-CSSCSCCCCCCTSCCTCCCC
T ss_pred CCCCCCCCCEEEEEEEcCCCCEEEEEECCcceEEEEeecCCCCEEEcC-cEEEEccccCHHHHHHHHcC
Confidence 89999999999955444 4444444544555444444445 67789999999999999975
No 3
>PRK00528 rpmE 50S ribosomal protein L31; Reviewed
Probab=97.81 E-value=1e-05 Score=56.63 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=41.9
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeehheecccceee----------hh-hhhHHHHHHhHHHHHHHHHH
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYH----------FR-ARRQMAQSIGQVAKFRRRYE 168 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMtkihhvGkVYH----------~r-AkRQMAqSlGQiAKFkRRy~ 168 (178)
|||||||+..=+..+...|.-.-+.-|. -.++.+++ +- -++.+..+-|+|+||++||+
T Consensus 1 MKk~IHP~y~~v~~~~~~g~~f~~~ST~-g~~~~~i~vdv~s~~HPfyT~G~q~~~d~~GRv~kF~kky~ 69 (71)
T PRK00528 1 MKKDIHPDYHPIKVVMTDGTEYETRSTW-GKTGPELRLDIDSGNHPAWTGGTQKLLDTGGRVAKFNKKFG 69 (71)
T ss_pred CCCCCCCCCEEEEEEEeCCCEEEEEEcC-CCCCCeEEEEECCCCCccEeCCcCeEecccCcHHHHHHHHc
Confidence 8999999999998888888877666543 11122221 12 34557789999999999996
No 4
>PRK01397 50S ribosomal protein L31; Provisional
Probab=97.38 E-value=7.4e-05 Score=53.87 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=40.0
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeehh----eec--ccceee-hhhhhH-HHH-HHhHHHHHHHHHHHh
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMTK----IHN--VGKVYH-FRARRQ-MAQ-SIGQVAKFRRRYEQQ 170 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMtk----ihh--vGkVYH-~rAkRQ-MAq-SlGQiAKFkRRy~q~ 170 (178)
|||||||+.+=|-... +|..+-+.-|+ |+- -..-.= |--+++ +.. +-|+|+||++||+.-
T Consensus 1 MKk~IHP~y~~v~~~~-~G~~f~~~ST~~~~~i~vdi~s~~HPFyTG~q~~~vdt~~GRVeKF~kry~~~ 69 (78)
T PRK01397 1 MKSGIHPEYKKFLIKV-GSDVFETMSTHPTGEILMDVDFRKHPAWNKDSGNVVNQSNKSVSDFNKRFSGL 69 (78)
T ss_pred CCCCCCCCCEEEEEEE-CCCEEEEeECCCCCcEEEEeCCCCCCcCcCCeeEEecCCCccHHHHHHHHcCc
Confidence 8999999999888876 79888877775 210 000000 111232 334 479999999999876
No 5
>PRK00019 rpmE 50S ribosomal protein L31; Reviewed
Probab=97.33 E-value=9.1e-05 Score=52.54 Aligned_cols=62 Identities=23% Similarity=0.486 Sum_probs=42.8
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeeh--h--eec--cccee-ehhhhhHHHHHHhHHHHHHHHHHHhh
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMT--K--IHN--VGKVY-HFRARRQMAQSIGQVAKFRRRYEQQL 171 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMt--k--ihh--vGkVY-H~rAkRQMAqSlGQiAKFkRRy~q~~ 171 (178)
||||+||+.+=+.++-..|..+-+.-| + |+- -.+-. -|--++++..+-|+|+||++||+...
T Consensus 1 MKk~IHP~y~~v~~~c~~g~~f~~~ST~~~~~i~vdi~s~~HPFyTG~q~~~dt~GRvekF~kry~~~~ 69 (72)
T PRK00019 1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKG 69 (72)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEeecCCCCcEEEEeCCCCCCcCcCCEeEeccCCcHHHHHHHhcccc
Confidence 899999999888877668888777766 2 110 00000 02234557889999999999998653
No 6
>CHL00136 rpl31 ribosomal protein L31; Validated
Probab=97.23 E-value=0.00015 Score=50.92 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=34.6
Q ss_pred HhhcCCccceeeEEeeccCee-eeeeehheecccceee----------hhhhhHHHHHHhHHHHHHHHHH
Q 030388 110 MKKGLHPQMQWISYVTQSGRL-MHVMMTKIHNVGKVYH----------FRARRQMAQSIGQVAKFRRRYE 168 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRL-mhvMMtkihhvGkVYH----------~rAkRQMAqSlGQiAKFkRRy~ 168 (178)
|||||||+..=+..|+-+|-. +-+.-|+ +. ++ |--++.+.+.-|+|+||++||+
T Consensus 2 MKk~IHP~y~~~~~v~c~~~~~~~~~ST~----~~-i~vdv~s~~HPfyTG~~~~~~~~Grv~kF~kr~~ 66 (68)
T CHL00136 2 PKKNIHPQWFPETKVYCDGQLVMTVGSTK----PE-LNVDIWSGNHPFYTGSQKIIDTEGRVERFMKKYG 66 (68)
T ss_pred CCCCCCCCceeeEEEEEcCCCEEEEeecC----CC-EEEEeCCCCCccCcCCeeEecccccHHHHHHHhC
Confidence 899999988545444445544 3333332 11 11 2234567888999999999997
No 7
>PRK01678 rpmE2 50S ribosomal protein L31 type B; Reviewed
Probab=97.22 E-value=0.00017 Score=53.02 Aligned_cols=62 Identities=26% Similarity=0.483 Sum_probs=42.1
Q ss_pred HhhcCCccceeeEEe-eccCeeeeeeehhee------cccc---eee----------hhhhhHHHHHHhHHHHHHHHHHH
Q 030388 110 MKKGLHPQMQWISYV-TQSGRLMHVMMTKIH------NVGK---VYH----------FRARRQMAQSIGQVAKFRRRYEQ 169 (178)
Q Consensus 110 MkKGlHPQmQWISYV-TQsGRLmhvMMtkih------hvGk---VYH----------~rAkRQMAqSlGQiAKFkRRy~q 169 (178)
|||||||+.+=+.++ ...|.-.-+.-|.=. .-|+ +++ |--++++.++-|+|+||++||+.
T Consensus 1 MKk~IHP~y~~v~~~~~t~g~~f~~~ST~~~~~t~~~~dg~~yp~i~vdi~S~~HPFyTGkq~~vdt~GRVekF~kry~~ 80 (87)
T PRK01678 1 MKKGIHPEYRPVVFHDTSTGFKFLTGSTITTDETIEWEDGKTYPLVKVEISSASHPFYTGKQKFVDTEGRVEKFNKRFGR 80 (87)
T ss_pred CCCCCCCCCEEEEEEECCCCCEEEEeeeccccceeeecCCcccceEEEEeCCCCCCcCcCCeeEeccCCcHHHHHHHHhh
Confidence 899999999888887 556766555554311 0122 111 22355678889999999999987
Q ss_pred hh
Q 030388 170 QL 171 (178)
Q Consensus 170 ~~ 171 (178)
..
T Consensus 81 ~~ 82 (87)
T PRK01678 81 FA 82 (87)
T ss_pred hh
Confidence 54
No 8
>COG0254 RpmE Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.00091 Score=48.38 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=40.0
Q ss_pred HhhcCCcc-ceeeEEeec-cCeeeeeeehheecc------cceee-hhhhhHHHHHHhHHHHHHHHHHHhh
Q 030388 110 MKKGLHPQ-MQWISYVTQ-SGRLMHVMMTKIHNV------GKVYH-FRARRQMAQSIGQVAKFRRRYEQQL 171 (178)
Q Consensus 110 MkKGlHPQ-mQWISYVTQ-sGRLmhvMMtkihhv------GkVYH-~rAkRQMAqSlGQiAKFkRRy~q~~ 171 (178)
|||||||. .+=+-++.. .|--+-++-|+-..+ ++..= +--+......-|.++||++||+...
T Consensus 1 MKk~IHP~y~~~v~~~~~s~g~~f~~~ST~~~~~i~vdV~s~~HPFyTG~qk~~d~~Grv~kF~kRf~~~~ 71 (75)
T COG0254 1 MKKDIHPEYYRPVVFVCSSCGNEFTTRSTKGTDEINLDVCSKCHPFYTGKQKIVDTEGRVEKFNKRFGGFK 71 (75)
T ss_pred CCCCcCCCccceEEEEeCCCCCEEEEEeccCCceEEEEeCCCCCCcCcCceeEeeccccHHHHHHHhcccc
Confidence 89999999 487777776 477777777763220 11100 1123334444499999999998754
No 9
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=56.68 E-value=8.1 Score=29.35 Aligned_cols=15 Identities=53% Similarity=1.205 Sum_probs=12.7
Q ss_pred ee-eEEeeccCeeeee
Q 030388 119 QW-ISYVTQSGRLMHV 133 (178)
Q Consensus 119 QW-ISYVTQsGRLmhv 133 (178)
|| |.|||++|.+..-
T Consensus 39 QWAIGyV~~dg~I~QT 54 (86)
T PF02762_consen 39 QWAIGYVTQDGKILQT 54 (86)
T ss_dssp SEEEEEEETTSEEEEE
T ss_pred ceeEEEEcCCCcEEEe
Confidence 78 8999999997653
No 10
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=50.16 E-value=25 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.480 Sum_probs=14.4
Q ss_pred hHHHHHHhH-HHHHHHHHHHhhhhhhc
Q 030388 151 RQMAQSIGQ-VAKFRRRYEQQLDAENN 176 (178)
Q Consensus 151 RQMAqSlGQ-iAKFkRRy~q~~aeenn 176 (178)
-++|.++|+ |.+||+--.....|+++
T Consensus 23 P~~~r~lG~~ir~fk~~~~~~~~~~~~ 49 (53)
T PF02416_consen 23 PELARSLGKAIREFKKAINEAKEEIEK 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 367888887 55676666555544443
No 11
>PF14828 Amnionless: Amnionless
Probab=48.94 E-value=77 Score=28.43 Aligned_cols=84 Identities=27% Similarity=0.379 Sum_probs=54.1
Q ss_pred cceeeeeEEeeeeeEEEEee-cchHHHHHHHHhhhhhhHHHHHHhhcCCcccee-eEEeecc--Ceeeeeeehheecccc
Q 030388 68 AGTCVLILFSIGTYYYELHV-RSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQW-ISYVTQS--GRLMHVMMTKIHNVGK 143 (178)
Q Consensus 68 agtcvlilfsigtyyyelhv-rsslktfrqrlr~s~~~hy~~~MkKGlHPQmQW-ISYVTQs--GRLmhvMMtkihhvGk 143 (178)
-|-|-.|--++=++.|. -. .-.|++|+++|++.... + ..-+..|| ||+|+-+ |.-+.|.++- .-
T Consensus 225 ~GhCC~iCGa~v~~~~~-~~~~fdl~~~~~~l~~~~~~-----~--~~~~~v~~~v~kv~~~~~~~~iQiVi~d----~g 292 (437)
T PF14828_consen 225 EGHCCPICGAIVTLEYS-CESTFDLQSYRQRLRHAFLE-----L--PQYDEVQMHVSKVWSDQSGNEIQIVITD----RG 292 (437)
T ss_pred CCCchhhcceEEEEeec-CCccccHHHHHHHHHHHHhc-----c--ccccceeEEEEEeecCCCCceEEEEEec----CC
Confidence 47777777777777776 22 23699999998765432 2 33446676 8899876 4667777766 33
Q ss_pred eeehhhhhHHH-HHHhHHHHH
Q 030388 144 VYHFRARRQMA-QSIGQVAKF 163 (178)
Q Consensus 144 VYH~rAkRQMA-qSlGQiAKF 163 (178)
-|.=++.++|| +.+..|+++
T Consensus 293 ~~sg~~~~~la~~i~~dl~~~ 313 (437)
T PF14828_consen 293 SYSGRAAEFLAREILKDLAEH 313 (437)
T ss_pred CcccHHHHHHHHHHHHHHHHH
Confidence 45557777777 444555544
No 12
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=43.65 E-value=15 Score=24.49 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=9.8
Q ss_pred eeeEEEEeecc
Q 030388 79 GTYYYELHVRS 89 (178)
Q Consensus 79 gtyyyelhvrs 89 (178)
|.||||++|.+
T Consensus 2 G~~YwEV~v~~ 12 (122)
T smart00449 2 GRHYFEVEIFD 12 (122)
T ss_pred CcEEEEEEEcC
Confidence 78999999975
No 13
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=33.29 E-value=63 Score=21.57 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=29.9
Q ss_pred cceeeeeEEeeeeeEEEEeecchHHH-HHHHHhhhhhhHHHHHHhhc
Q 030388 68 AGTCVLILFSIGTYYYELHVRSSLKT-FRQRLRNSVLGHYLEKMKKG 113 (178)
Q Consensus 68 agtcvlilfsigtyyyelhvrsslkt-frqrlr~s~~~hy~~~MkKG 113 (178)
....|||++++..-.+++-+...++. |-+...++....+...+++|
T Consensus 56 ~~~gvlilv~~~~r~~~i~~g~~~~~~l~~~~~~~i~~~~~~~~~~~ 102 (119)
T PF04536_consen 56 CNNGVLILVSKDDRKVRIETGGGLEERLTDSECESIIDEMVPYFKDG 102 (119)
T ss_dssp TSSEEEEEEETTTTEEEEEE-CTCCCCH-HHHHHHHHHHHHHHHHTT
T ss_pred ccCcEEEEEEcCCCEEEEEECCchhhcCCHHHHHHHHHHHHHHHHcC
Confidence 35789999999999999999888753 44444444444444444443
No 14
>PF08460 SH3_5: Bacterial SH3 domain; InterPro: IPR013667 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; GO: 0016787 hydrolase activity; PDB: 1R77_B.
Probab=32.64 E-value=27 Score=23.73 Aligned_cols=12 Identities=50% Similarity=1.102 Sum_probs=8.0
Q ss_pred ceeeEEeeccCe
Q 030388 118 MQWISYVTQSGR 129 (178)
Q Consensus 118 mQWISYVTQsGR 129 (178)
-+||||+.-||.
T Consensus 48 y~Wisy~~~sG~ 59 (65)
T PF08460_consen 48 YVWISYISYSGQ 59 (65)
T ss_dssp EEEEEEE-TT--
T ss_pred EEEEEEECCCCe
Confidence 489999999993
No 15
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.77 E-value=40 Score=23.34 Aligned_cols=14 Identities=43% Similarity=1.049 Sum_probs=10.9
Q ss_pred ccceee-EEeeccCe
Q 030388 116 PQMQWI-SYVTQSGR 129 (178)
Q Consensus 116 PQmQWI-SYVTQsGR 129 (178)
|..||+ |||+.++.
T Consensus 32 ~~V~w~~s~v~~d~~ 46 (77)
T PF14026_consen 32 PGVQWLRSYVSEDDG 46 (77)
T ss_pred CCeEEEEEEEecCCC
Confidence 999999 67886543
No 16
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.18 E-value=65 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=21.8
Q ss_pred eEEeee-eeEEEEeecchHHHHHHHHh
Q 030388 74 ILFSIG-TYYYELHVRSSLKTFRQRLR 99 (178)
Q Consensus 74 ilfsig-tyyyelhvrsslktfrqrlr 99 (178)
|+..|| .||.|..+....+.+..|+.
T Consensus 71 v~v~iG~~~~ve~~~~eA~~~l~~r~~ 97 (129)
T cd00890 71 VLVDLGTGVYVEKSLEEAIEFLKKRLE 97 (129)
T ss_pred EEEEecCCEEEEecHHHHHHHHHHHHH
Confidence 678899 89999999888888877653
No 17
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=27.75 E-value=38 Score=33.39 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred eehhhhhHHHHHHhHHHHHHHHH
Q 030388 145 YHFRARRQMAQSIGQVAKFRRRY 167 (178)
Q Consensus 145 YH~rAkRQMAqSlGQiAKFkRRy 167 (178)
-|+..|||-||-||.|-.-|||-
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~ 638 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRN 638 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcC
Confidence 49999999999999999888773
No 18
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=26.21 E-value=1.5e+02 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=12.7
Q ss_pred hHHHHHHhHHHHHHHHHHH
Q 030388 151 RQMAQSIGQVAKFRRRYEQ 169 (178)
Q Consensus 151 RQMAqSlGQiAKFkRRy~q 169 (178)
...+.++||- |+.+|+.
T Consensus 109 ~~I~~tigqA--F~~ay~~ 125 (127)
T cd01274 109 AEIITTLGQA--FEVAYQL 125 (127)
T ss_pred HHHHHHHHHH--HHHHHhh
Confidence 5567788984 8888875
No 19
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.11 E-value=33 Score=33.76 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=28.8
Q ss_pred eecccceeehhhhhHHHHHHhHHHHHHHHHHHh
Q 030388 138 IHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQ 170 (178)
Q Consensus 138 ihhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~ 170 (178)
..--|+||-=|.|+.++...|.||.|-||++..
T Consensus 208 ~~g~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~ 240 (736)
T COG2943 208 LGGEGNIFYRRRRRNVKRKAGNIADFCRRWGSA 240 (736)
T ss_pred hCCCCceeeehHhhhhcccccCHHHHHHHhCcc
Confidence 345589999999999999999999999998753
No 20
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=24.25 E-value=63 Score=24.79 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=24.3
Q ss_pred EEeeccCeeeeeeehheecccceeehhhhhHHHHHHhHHHHHHHHHHHhhhhhhc
Q 030388 122 SYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQLDAENN 176 (178)
Q Consensus 122 SYVTQsGRLmhvMMtkihhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~~aeenn 176 (178)
..|+|+|+-|+--..- =+.+...+++.|+|..+-. ||||
T Consensus 51 ~l~F~dG~W~~e~~~~---------------~~~~~~e~~rlkkk~~~Le-EENN 89 (108)
T cd07429 51 ELVFEDGRWISESGGS---------------SGVSGREVLRLKKKNQQLE-EENN 89 (108)
T ss_pred eEEeeCCEEecCCCCC---------------CCCchhHHHHHHHHHHHHH-HHHH
Confidence 5788888887654321 1234456677788665544 7776
No 21
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.09 E-value=39 Score=26.91 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHHhhhhhhcC
Q 030388 156 SIGQVAKFRRRYEQQLDAENNE 177 (178)
Q Consensus 156 SlGQiAKFkRRy~q~~aeenne 177 (178)
-+.+.-|.+++|+++.|||.++
T Consensus 68 ~~~~~~k~~~~~~~~~deD~~~ 89 (248)
T PF11368_consen 68 FIYKSRKYKKLYEEEEDEDENE 89 (248)
T ss_pred HHHHHHHHHHHhcccccchHHH
Confidence 3456778888898876666554
No 22
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.46 E-value=2.1e+02 Score=20.62 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=12.9
Q ss_pred hHHHHHHhHHHHHHHHHHH
Q 030388 151 RQMAQSIGQVAKFRRRYEQ 169 (178)
Q Consensus 151 RQMAqSlGQiAKFkRRy~q 169 (178)
++++.+||| -|+.+|++
T Consensus 114 ~~I~~tig~--AF~~ay~~ 130 (132)
T cd01267 114 EEIILTIGQ--AFELAYRL 130 (132)
T ss_pred HHHHHHHHH--HHHHHHHh
Confidence 567788998 48888875
No 23
>PTZ00044 ubiquitin; Provisional
Probab=22.86 E-value=2e+02 Score=18.26 Aligned_cols=39 Identities=18% Similarity=0.416 Sum_probs=28.8
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
+.-+++.--.+++++++++.. +.|+.|+-|.+.| .|+.+
T Consensus 12 ~~~l~v~~~~tv~~lK~~i~~----------~~gi~~~~q~L~~---~g~~L 50 (76)
T PTZ00044 12 KQSFNFEPDNTVQQVKMALQE----------KEGIDVKQIRLIY---SGKQM 50 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHH----------HHCCCHHHeEEEE---CCEEc
Confidence 445667777788888888754 4689999999887 46553
No 24
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=22.65 E-value=36 Score=31.17 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=15.1
Q ss_pred eecccceeehhhhhHHHHHH
Q 030388 138 IHNVGKVYHFRARRQMAQSI 157 (178)
Q Consensus 138 ihhvGkVYH~rAkRQMAqSl 157 (178)
++||||+|-+=|. +||+.+
T Consensus 308 v~HVGKIYNvlA~-~iA~~i 326 (399)
T PRK04439 308 VNHVGKIYNVLAN-RIAREI 326 (399)
T ss_pred cccchHHHHHHHH-HHHHHH
Confidence 8999999998764 566654
No 25
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.37 E-value=2.6e+02 Score=20.81 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=31.3
Q ss_pred ccCcceeeeeccCCceeeee------cceeeeeEE-ee------eeeEEEEeecc
Q 030388 48 RRKPLAAVTWLPKSPVFSLF------AGTCVLILF-SI------GTYYYELHVRS 89 (178)
Q Consensus 48 rrkplaavtwlpkspvfslf------agtcvlilf-si------gtyyyelhvrs 89 (178)
..-||+.++|=.+.-..+++ +|+-|-|.+ .+ |+|+|+.-+..
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 34468889998877776654 688888877 33 99999987654
No 26
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=22.09 E-value=2.2e+02 Score=18.00 Aligned_cols=39 Identities=23% Similarity=0.563 Sum_probs=27.5
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcC--CccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGL--HPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGl--HPQmQWISYVTQsGRLm 131 (178)
++.+|+....+...+++.+.. +.|+ .|.-|+|.| .|+.+
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~----------~~~i~~~~~~q~L~~---~G~~L 52 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEE----------EKGCDYPPEQQKLIY---SGKIL 52 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHH----------hhCCCCChhHeEEEE---CCEEc
Confidence 455666666788888887654 3477 889999987 36654
No 27
>PRK14011 prefoldin subunit alpha; Provisional
Probab=21.39 E-value=95 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEeeee-eEEEEeecchHHHHHHHHh
Q 030388 74 ILFSIGT-YYYELHVRSSLKTFRQRLR 99 (178)
Q Consensus 74 ilfsigt-yyyelhvrsslktfrqrlr 99 (178)
+|.+||| ||-|.-+....+.|..|+.
T Consensus 72 VlVdIGtGy~VEk~~~eA~~~~~~ri~ 98 (144)
T PRK14011 72 AILGVGSDIYLEKDVSEVIEDFKKSVE 98 (144)
T ss_pred EEEEccCCeEEEecHHHHHHHHHHHHH
Confidence 6788998 6668888888888887754
No 28
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=21.34 E-value=51 Score=29.46 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=28.1
Q ss_pred ceeeeeEEeeeeeEEEEeecc---------hHHHHHHHHhhhhhhHHH
Q 030388 69 GTCVLILFSIGTYYYELHVRS---------SLKTFRQRLRNSVLGHYL 107 (178)
Q Consensus 69 gtcvlilfsigtyyyelhvrs---------slktfrqrlr~s~~~hy~ 107 (178)
|.|+|++=|+|.||+--.+.+ +|.+..|||..-...|-|
T Consensus 154 ~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeKL~~d~~l 201 (293)
T KOG2859|consen 154 GICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEKLCKDAIL 201 (293)
T ss_pred ceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHHHHhhhee
Confidence 789999999999998544433 456677777766655543
No 29
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=19 Score=30.31 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=30.4
Q ss_pred eEEeeccCeeeeeeehheecccceeehhhhhHHHH
Q 030388 121 ISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQ 155 (178)
Q Consensus 121 ISYVTQsGRLmhvMMtkihhvGkVYH~rAkRQMAq 155 (178)
+=..|+||.|-|-+|.-=+|+.|+|+.+......+
T Consensus 114 LLLLTnDG~la~rL~~P~~~~~K~Y~v~v~g~~~~ 148 (248)
T COG1187 114 LLLLTNDGELAHRLMHPSSEVEKEYLVRVEGPVTE 148 (248)
T ss_pred EEEEeCCHHHHHHhcCCCCCCCEEEEEEEecCCCH
Confidence 35789999999999999999999999998865544
No 30
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=20.53 E-value=82 Score=20.65 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=9.4
Q ss_pred eeeEEEEeecch
Q 030388 79 GTYYYELHVRSS 90 (178)
Q Consensus 79 gtyyyelhvrss 90 (178)
|.||||+.|.+.
T Consensus 2 G~~YwEV~v~~~ 13 (124)
T PF00622_consen 2 GKHYWEVEVDSG 13 (124)
T ss_dssp SEEEEEEEETGG
T ss_pred cCEEEEEEEecC
Confidence 678999888764
No 31
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=20.30 E-value=41 Score=30.84 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=15.3
Q ss_pred heecccceeehhhhhHHHHHH
Q 030388 137 KIHNVGKVYHFRARRQMAQSI 157 (178)
Q Consensus 137 kihhvGkVYH~rAkRQMAqSl 157 (178)
-++||||+|-+-|. ++|+.+
T Consensus 307 Pv~HVGKIYNvlA~-~iA~~I 326 (396)
T PF01941_consen 307 PVNHVGKIYNVLAN-EIAQRI 326 (396)
T ss_pred CcchhhHHHHHHHH-HHHHHH
Confidence 48999999999774 466554
No 32
>KOG1106 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=38 Score=28.17 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=23.3
Q ss_pred cceeeeeEEeeeeeEEEEe------------ecchHHHHHHHHh
Q 030388 68 AGTCVLILFSIGTYYYELH------------VRSSLKTFRQRLR 99 (178)
Q Consensus 68 agtcvlilfsigtyyyelh------------vrsslktfrqrlr 99 (178)
|-.-.+=|=|++.||||+- .+....||+||+|
T Consensus 88 Adp~~vdL~s~~phFY~fg~kl~~l~s~~~l~~~~se~l~~R~~ 131 (177)
T KOG1106|consen 88 ADPNKVDLRSLCPHFYEFGMKLLPLDSGENLGIILSETLRSRVR 131 (177)
T ss_pred cCcceeeccccccHHHHHHHHHhhcccCcchhHHHHHHHHHHHH
Confidence 4455677889999999862 2344589999986
Done!