Query 030388
Match_columns 178
No_of_seqs 10 out of 12
Neff 1.2
Searched_HMMs 29240
Date Mon Mar 25 21:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkw_Y 50S ribosomal protein L 98.4 8.3E-08 2.8E-12 67.3 1.0 61 110-171 1-67 (73)
2 1vs6_Z 50S ribosomal protein L 98.1 4.6E-08 1.6E-12 67.9 -4.4 60 110-170 1-67 (70)
3 3v2d_4 50S ribosomal protein L 97.2 0.00017 5.9E-09 50.4 2.3 60 110-170 1-66 (71)
4 3f1f_4 50S ribosomal protein L 96.8 0.00034 1.2E-08 51.7 1.5 64 107-171 24-93 (97)
5 3bbo_1 Ribosomal protein L31; 91.8 0.00036 1.2E-08 54.6 -10.9 60 107-170 46-116 (144)
6 1ntv_A Disabled homolog 1; bet 70.7 3.6 0.00012 29.6 3.3 22 151-174 126-147 (152)
7 4dbb_A Amyloid beta A4 precurs 52.7 25 0.00084 25.6 5.0 49 118-171 80-137 (162)
8 1p3r_A Disabled homolog 2; PTB 52.1 23 0.00078 25.7 4.7 22 151-174 125-146 (160)
9 1k8r_B Protein kinase BYR2; si 49.9 10 0.00035 28.8 2.6 22 113-134 33-54 (110)
10 3op0_A Signal transduction pro 43.5 10 0.00034 32.9 1.9 41 92-134 238-281 (323)
11 4en2_M AP-1 complex subunit MU 43.0 8.8 0.0003 30.1 1.4 12 118-129 249-260 (266)
12 3mtn_B UBA80, ubcep1, ubiquiti 37.7 64 0.0022 19.3 4.5 39 80-131 15-53 (85)
13 2ej8_A DCC-interacting protein 36.0 49 0.0017 23.8 4.3 26 150-177 128-153 (160)
14 3l81_A AP-4 complex subunit MU 33.8 13 0.00043 29.9 1.0 14 117-130 284-297 (301)
15 3bux_B E3 ubiquitin-protein li 29.5 14 0.00049 31.9 0.6 42 91-134 252-296 (329)
16 3ml6_A Chimeric complex betwee 28.3 16 0.00055 30.3 0.7 14 117-130 368-381 (385)
17 1j27_A Hypothetical protein TT 25.1 26 0.00088 24.9 1.2 31 141-174 14-44 (102)
18 1wju_A NEDD8 ultimate buster-1 25.0 1.8E+02 0.006 20.3 5.7 50 69-131 14-69 (100)
19 1aqc_A X11; PTB domain; 2.30A 24.7 1.2E+02 0.0042 22.1 4.9 20 150-171 146-165 (172)
20 1i31_A Clathrin coat assembly 23.6 25 0.00085 27.9 1.0 14 117-130 297-310 (314)
21 1w63_M Adaptor-related protein 22.3 32 0.0011 28.0 1.4 17 113-130 402-418 (423)
22 2vgl_M AP-2 complex subunit MU 22.3 27 0.00092 28.6 1.0 13 118-130 419-431 (435)
23 2b6g_A VTS1P; alpha-helix, pen 22.1 56 0.0019 24.2 2.6 61 91-164 49-109 (119)
24 3k9o_B Ubiquitin, UBB+1; E2-25 21.5 1.5E+02 0.0051 18.4 4.3 39 80-131 13-51 (96)
25 3n3k_B Ubiquitin; hydrolase, p 21.3 1.4E+02 0.0048 17.8 4.2 39 80-131 15-53 (85)
26 3dve_B Voltage-dependent N-typ 20.5 15 0.0005 21.3 -0.7 6 140-145 1-6 (23)
27 3dbh_I NEDD8; cell cycle, acti 20.4 1.5E+02 0.0052 17.8 4.3 39 80-131 24-62 (88)
28 4dwf_A HLA-B-associated transc 20.2 1.6E+02 0.0055 18.1 4.8 39 80-131 17-55 (90)
29 1fxk_C Protein (prefoldin); ar 20.2 97 0.0033 21.2 3.4 26 74-99 72-98 (133)
No 1
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=98.35 E-value=8.3e-08 Score=67.33 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=48.1
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeehhe------ecccceeehhhhhHHHHHHhHHHHHHHHHHHhh
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKI------HNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQL 171 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMtki------hhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~~ 171 (178)
|||||||+..++.++-..|..+.+..|+- +...--+. -.++++.++-|+|+||++||+...
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~f~t~ST~~~i~vdi~s~~HPFy-TGkqk~vdt~GRVekF~kry~~~~ 67 (73)
T 1nkw_Y 1 MQKDLHPKAVPCKIIYQGQVVMETMSTRPEIHVDVWSGVHPFW-TGEERFLDTEGRVDKFNKRFGDSY 67 (73)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEcccCCCEEEEECCCCCcCC-cCcEEEEeccccHHHHHHHHhccc
Confidence 89999999999999999999998888863 22222222 346678899999999999999765
No 2
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=98.11 E-value=4.6e-08 Score=67.93 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=47.2
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeehhee-------cccceeehhhhhHHHHHHhHHHHHHHHHHHh
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKIH-------NVGKVYHFRARRQMAQSIGQVAKFRRRYEQQ 170 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMtkih-------hvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~ 170 (178)
|||||||+.+++.++-..|..+.+..|+-. ...--+ +-.++++.++-|+|+||++||+..
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~f~t~ST~~~ei~vdi~s~~HPF-yTG~qk~vdt~GRV~kF~kry~~~ 67 (70)
T 1vs6_Z 1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPF-FTGKQRDVATGGRVDRFNKRFNIP 67 (70)
T ss_dssp CCCTTSCCCCCCBCCCCSSCCCCCBCCCCCCCCCBCCSSSCCB-CCCCCTTTTTHHHHSCSSTTTTTT
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEeecCCCcEeeeecCCCCcc-CcCcEEEEeccccHHHHHHHhhcc
Confidence 899999999999999889999888888522 111112 344677889999999999999864
No 3
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=97.15 E-value=0.00017 Score=50.39 Aligned_cols=60 Identities=23% Similarity=0.522 Sum_probs=23.8
Q ss_pred HhhcCCccceeeEEeeccCeeeeeeehhe------ecccceeehhhhhHHHHHHhHHHHHHHHHHHh
Q 030388 110 MKKGLHPQMQWISYVTQSGRLMHVMMTKI------HNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQ 170 (178)
Q Consensus 110 MkKGlHPQmQWISYVTQsGRLmhvMMtki------hhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~ 170 (178)
|||||||+..-+-++-..|..+-+--|+= +.----+ +--+..+..+-|+|+||++||+..
T Consensus 1 MKk~IHP~Y~~v~v~c~~g~~f~t~ST~~~i~vdi~S~~HPF-yTGkqk~vdt~GRVekF~kryg~~ 66 (71)
T 3v2d_4 1 MKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPF-YTGQQRFVDTEGRVERFQRRYGDS 66 (71)
T ss_dssp CCSSSSCCCEEEEEEETTSCEEEEEESSSEEEESCCTTTSSS-SSCC--------------------
T ss_pred CCCCCCCCCeEEEEEECCCCEEEeeeeccCEEEEecCCCCCC-CCCCEEEEcccCcHHHHHHHHccc
Confidence 89999999988887766777666655541 1100000 123456789999999999999865
No 4
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=96.83 E-value=0.00034 Score=51.68 Aligned_cols=64 Identities=20% Similarity=0.495 Sum_probs=12.2
Q ss_pred HHHHhhcCCccceeeEEeeccCeeeeeeehh------eecccceeehhhhhHHHHHHhHHHHHHHHHHHhh
Q 030388 107 LEKMKKGLHPQMQWISYVTQSGRLMHVMMTK------IHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQL 171 (178)
Q Consensus 107 ~~~MkKGlHPQmQWISYVTQsGRLmhvMMtk------ihhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~~ 171 (178)
...|||||||+..-+-++-..|..+-+--|+ |+.----+ +--+..+..+-|+|+||++||+...
T Consensus 24 ~~~MKk~IHP~Y~~v~v~ct~G~~f~t~ST~~~i~vDI~S~~HPF-YTGkqk~vdt~GRVeKF~kRyg~~~ 93 (97)
T 3f1f_4 24 EANVKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPF-YTGQQRFVDTEGRVERFQRRYGDSY 93 (97)
T ss_dssp ------------CCCEEEETTEEEEECCCSSCCEEESSCTTC-----------------------------
T ss_pred hccccCCCCCCCeEEEEEECCCCEEEeeeeeeEEEEEECCCCCCC-CcCCEEEEcccCcHHHHHHHHcccc
Confidence 4679999999988887765566655554443 11100001 2235567899999999999998644
No 5
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=91.78 E-value=0.00036 Score=54.65 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=32.9
Q ss_pred HHHHhhcCCccceeeEEeeccCeeeeeeehheecccceee----------hhh-hhHHHHHHhHHHHHHHHHHHh
Q 030388 107 LEKMKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYH----------FRA-RRQMAQSIGQVAKFRRRYEQQ 170 (178)
Q Consensus 107 ~~~MkKGlHPQmQWISYVTQsGRLmhvMMtkihhvGkVYH----------~rA-kRQMAqSlGQiAKFkRRy~q~ 170 (178)
+..||+||||+..-+-.|.-+|--... +..+.+.++ |-- .+++..+-|+|+||++||+..
T Consensus 46 ~~~MKk~IHPeY~~Vv~v~cs~g~~f~----t~ST~~~i~VDIcS~cHPFYTGkqkk~vDt~GRVeKF~KRyg~~ 116 (144)
T 3bbo_1 46 ITCRKKELHPEFHEDAKVYCNGELVMT----TGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGL 116 (144)
T ss_dssp ----CTTTCCCCCHHHHHCSSSCTTTS----CSSCSCSSSCCSSCCCCCSSSSSSSCCCCCCCCCCCSSCCCCCC
T ss_pred eeccCCCCCCCCEEeEEEEcCCCeEEE----EEecCceEEeeecCCCCccEeCceeeEecccccHHHHHHHHhcc
Confidence 468999999997765555545432221 111111111 111 223677889999999999753
No 6
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=70.67 E-value=3.6 Score=29.63 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.6
Q ss_pred hHHHHHHhHHHHHHHHHHHhhhhh
Q 030388 151 RQMAQSIGQVAKFRRRYEQQLDAE 174 (178)
Q Consensus 151 RQMAqSlGQiAKFkRRy~q~~aee 174 (178)
+.++++|||- |...|++...||
T Consensus 126 ~~I~~tigqA--F~~ay~~~~~~~ 147 (152)
T 1ntv_A 126 EPVILDLRDL--FQLIYELKQREE 147 (152)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTTC
T ss_pred HHHHHHHHHH--HHHHHHHHhHHH
Confidence 7899999984 888888877544
No 7
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=52.71 E-value=25 Score=25.61 Aligned_cols=49 Identities=33% Similarity=0.542 Sum_probs=31.4
Q ss_pred ceeeEEeeccCeeeeeeeh---------heecccceeehhhhhHHHHHHhHHHHHHHHHHHhh
Q 030388 118 MQWISYVTQSGRLMHVMMT---------KIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQL 171 (178)
Q Consensus 118 mQWISYVTQsGRLmhvMMt---------kihhvGkVYH~rAkRQMAqSlGQiAKFkRRy~q~~ 171 (178)
++=|||+++++++.-.+.. .++| |+.-..-+.++++||| .|..+|++-.
T Consensus 80 l~~ISf~a~~~~~f~fIar~~~~~~~~~~~CH---VF~~~~A~~I~~tigq--AF~~ay~~~l 137 (162)
T 4dbb_A 80 LRTISYIADIGNIVVLMARRRMPRSQYKMICH---VFESEDAQLIAQSIGQ--AFSVAYQEFL 137 (162)
T ss_dssp GGGEEEEEEETTEEEEEEEECCSTTCEEEEEE---EEECTTHHHHHHHHHH--HHHHHHGGGT
T ss_pred cceeEEEEECCCEEEEEeccCCCCCCCcEEEE---EEECCCHHHHHHHHHH--HHHHHHHHHH
Confidence 6678898888876554432 1333 2322235678999998 4788887654
No 8
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=52.06 E-value=23 Score=25.66 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=15.9
Q ss_pred hHHHHHHhHHHHHHHHHHHhhhhh
Q 030388 151 RQMAQSIGQVAKFRRRYEQQLDAE 174 (178)
Q Consensus 151 RQMAqSlGQiAKFkRRy~q~~aee 174 (178)
..++.+|||. |...|++...|+
T Consensus 125 ~~I~~tigqA--F~~ay~~~~~~~ 146 (160)
T 1p3r_A 125 EPLVVDLKDL--FQVIYNVKKKEE 146 (160)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHhhhHHH
Confidence 6788999995 777777665443
No 9
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=49.90 E-value=10 Score=28.76 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.0
Q ss_pred cCCccceeeEEeeccCeeeeee
Q 030388 113 GLHPQMQWISYVTQSGRLMHVM 134 (178)
Q Consensus 113 GlHPQmQWISYVTQsGRLmhvM 134 (178)
||.---.|+-.|||+||+.|+-
T Consensus 33 ~ledpskw~Vcvtqssr~~~it 54 (110)
T 1k8r_B 33 SLEDASKFIVCVSQSSRIKLIT 54 (110)
T ss_dssp TCCCTTSEEEEEECSSSEEECC
T ss_pred CCCChhHeEEEEecCceEEEec
Confidence 6766678999999999999875
No 10
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=43.48 E-value=10 Score=32.86 Aligned_cols=41 Identities=24% Similarity=0.516 Sum_probs=27.7
Q ss_pred HHHHHHHh--hhhhhHHHHHHhhcCCcccee-eEEeeccCeeeeee
Q 030388 92 KTFRQRLR--NSVLGHYLEKMKKGLHPQMQW-ISYVTQSGRLMHVM 134 (178)
Q Consensus 92 ktfrqrlr--~s~~~hy~~~MkKGlHPQmQW-ISYVTQsGRLmhvM 134 (178)
+...+||. ...-|+|+.|.-+-- .-|| |+||++||.++|-+
T Consensus 238 dEV~~~L~~~~~KpGsYIfR~ScTr--lGqwAIgYV~s~g~I~qti 281 (323)
T 3op0_A 238 DEVQERLQACRDKPGSYIFRPSCTR--LGQWAIGYVSSDGSILQTI 281 (323)
T ss_dssp HHHHHHTTGGGGSTTEEEEEECSSS--TTCEEEEEECTTSCEEEEC
T ss_pred HHHHHHHHHhccCCCcEEEEeccCc--cCceEEEEEcCCCceeecC
Confidence 44556666 556788877664321 2367 99999999988754
No 11
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=43.05 E-value=8.8 Score=30.14 Aligned_cols=12 Identities=42% Similarity=1.193 Sum_probs=10.9
Q ss_pred ceeeEEeeccCe
Q 030388 118 MQWISYVTQSGR 129 (178)
Q Consensus 118 mQWISYVTQsGR 129 (178)
..|+.|+||+|.
T Consensus 249 ~kwVrY~T~sg~ 260 (266)
T 4en2_M 249 LPWVRYITQNGD 260 (266)
T ss_dssp EEEEEEEEECSS
T ss_pred CCCEEEEEeCCC
Confidence 579999999997
No 12
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=37.71 E-value=64 Score=19.27 Aligned_cols=39 Identities=18% Similarity=0.522 Sum_probs=28.3
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
++..++.-..++..+++++.. +.|+.|..|.+.| .|+.+
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~----------~~~i~~~~qrL~~---~g~~L 53 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQD----------KEGIPPDQQRLIF---AGKQL 53 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHH----------HHCCCGGGCEEEE---TTEEC
T ss_pred EEEEEECCCCCHHHHHHHHHH----------HHCcChHHEEEEE---CCEEC
Confidence 455566666788888888754 3589999999887 56654
No 13
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=36.04 E-value=49 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=15.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhhhhhcC
Q 030388 150 RRQMAQSIGQVAKFRRRYEQQLDAENNE 177 (178)
Q Consensus 150 kRQMAqSlGQiAKFkRRy~q~~aeenne 177 (178)
-+.++++||| .|..+|++...++.++
T Consensus 128 A~~I~~tigq--AF~~ay~~~l~~~~~~ 153 (160)
T 2ej8_A 128 GEKICDSVGL--AKQIALHAELDRRASE 153 (160)
T ss_dssp HHHHHHHHHH--HHHHHHHHC-------
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhHHH
Confidence 4668889998 4888898877544433
No 14
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=33.81 E-value=13 Score=29.88 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=11.8
Q ss_pred cceeeEEeeccCee
Q 030388 117 QMQWISYVTQSGRL 130 (178)
Q Consensus 117 QmQWISYVTQsGRL 130 (178)
-.-|+.|+||+|.-
T Consensus 284 ~~kwVRYiT~sg~Y 297 (301)
T 3l81_A 284 PHKWVRHLSHSDAY 297 (301)
T ss_dssp CEEEEEEEEEEEEE
T ss_pred CccceEEEEeCCcE
Confidence 46899999999963
No 15
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=29.50 E-value=14 Score=31.89 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=29.3
Q ss_pred HHHHHHHHhh--hhhhHHHHHHhhcCCcccee-eEEeeccCeeeeee
Q 030388 91 LKTFRQRLRN--SVLGHYLEKMKKGLHPQMQW-ISYVTQSGRLMHVM 134 (178)
Q Consensus 91 lktfrqrlr~--s~~~hy~~~MkKGlHPQmQW-ISYVTQsGRLmhvM 134 (178)
-+...+||.+ ..-|+|+-|.-+-- .-|| |+||+++|.++|.+
T Consensus 252 ydEv~~~L~~~~~kpGsYIfR~ScTr--lGqwAIgyV~~~~~I~qti 296 (329)
T 3bux_B 252 YDEVKARLQKFIHKPGSYIFRLSCTR--LGQWAIGYVTADGNILQTI 296 (329)
T ss_dssp HHHHHHHHGGGTTSTTEEEEEECSSS--TTSEEEEEECTTSCEEEEC
T ss_pred HHHHHHHHHHhcCCCCcEEEEeccCc--cCceEEEEECCCCceeeeC
Confidence 3455666666 56788877765422 2367 99999999998864
No 16
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=28.34 E-value=16 Score=30.35 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.7
Q ss_pred cceeeEEeeccCee
Q 030388 117 QMQWISYVTQSGRL 130 (178)
Q Consensus 117 QmQWISYVTQsGRL 130 (178)
-..|+.|+||+|.-
T Consensus 368 ~~kwVRYiT~sg~Y 381 (385)
T 3ml6_A 368 VIKWVRYIGRSGIY 381 (385)
T ss_dssp CEEEEEECEEEEEE
T ss_pred ccccEEEEEECCCE
Confidence 35799999999973
No 17
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=25.08 E-value=26 Score=24.86 Aligned_cols=31 Identities=6% Similarity=0.251 Sum_probs=25.9
Q ss_pred ccceeehhhhhHHHHHHhHHHHHHHHHHHhhhhh
Q 030388 141 VGKVYHFRARRQMAQSIGQVAKFRRRYEQQLDAE 174 (178)
Q Consensus 141 vGkVYH~rAkRQMAqSlGQiAKFkRRy~q~~aee 174 (178)
.+ +.-+..||+..+|+ ++|+|+||+--.||-
T Consensus 14 l~-~~SLKeKR~vvksl--~~rlr~rFnVSvAEv 44 (102)
T 1j27_A 14 TP-ARSLKEKRALIKPA--LERLKARFPVSAARL 44 (102)
T ss_dssp CC-CSSHHHHHHHHHHH--HHHHHHHSSCEEEEE
T ss_pred Ee-CCChHHhHHHHHHH--HHHHhhcCCeEEEEe
Confidence 45 77789999999998 899999998766553
No 18
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.98 E-value=1.8e+02 Score=20.26 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred ceeeeeEEeee------eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 69 GTCVLILFSIG------TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 69 gtcvlilfsig------tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
|.|.+=++..+ ++-+|+........+++.+. -+.|+.|..|++-|- |+.+
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~----------~k~gip~~qQrLI~~---GKiL 69 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIA----------ETFGLQENYIKIVIN---KKQL 69 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHH----------HHTTCCSTTCEEEET---TEEC
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHH----------HHHCcCHHHeEEEeC---CeEC
Confidence 45555556665 66777777788888888764 356999999999773 6654
No 19
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=24.67 E-value=1.2e+02 Score=22.11 Aligned_cols=20 Identities=45% Similarity=0.655 Sum_probs=15.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHhh
Q 030388 150 RRQMAQSIGQVAKFRRRYEQQL 171 (178)
Q Consensus 150 kRQMAqSlGQiAKFkRRy~q~~ 171 (178)
-..++++|||- |...|++-.
T Consensus 146 A~~I~~tIGqA--F~~ay~~~l 165 (172)
T 1aqc_A 146 AQLIAQSIGQA--FSVAYQEFL 165 (172)
T ss_dssp HHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHH
Confidence 46789999984 777887755
No 20
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=23.57 E-value=25 Score=27.94 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.7
Q ss_pred cceeeEEeeccCee
Q 030388 117 QMQWISYVTQSGRL 130 (178)
Q Consensus 117 QmQWISYVTQsGRL 130 (178)
-..|+.|+||+|.-
T Consensus 297 ~~kwVrYit~sg~y 310 (314)
T 1i31_A 297 VIKWVRYIGRSGIY 310 (314)
T ss_dssp CEEEEEEEEEEEEE
T ss_pred ccCceEEEEeCCeE
Confidence 36899999999964
No 21
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=22.35 E-value=32 Score=28.04 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=13.6
Q ss_pred cCCccceeeEEeeccCee
Q 030388 113 GLHPQMQWISYVTQSGRL 130 (178)
Q Consensus 113 GlHPQmQWISYVTQsGRL 130 (178)
|..| ..|+.|+||+|.-
T Consensus 402 ~y~~-~kwVrY~t~sg~y 418 (423)
T 1w63_M 402 GYQA-IPWVRYITQNGDY 418 (423)
T ss_dssp CCCC-EEEEEEEEEBSCE
T ss_pred CCCC-cCceEEEEeCCcE
Confidence 4444 7899999999964
No 22
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=22.28 E-value=27 Score=28.56 Aligned_cols=13 Identities=31% Similarity=0.994 Sum_probs=11.4
Q ss_pred ceeeEEeeccCee
Q 030388 118 MQWISYVTQSGRL 130 (178)
Q Consensus 118 mQWISYVTQsGRL 130 (178)
..|+.|+||+|.-
T Consensus 419 ~kwVrY~t~sg~y 431 (435)
T 2vgl_M 419 IKWVRYIGRSGIY 431 (435)
T ss_dssp EEEEEEEEEEEEE
T ss_pred cCceEEEEeCCeE
Confidence 5899999999964
No 23
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.07 E-value=56 Score=24.21 Aligned_cols=61 Identities=25% Similarity=0.472 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeeeeeeehheecccceeehhhhhHHHHHHhHHHHHH
Q 030388 91 LKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFR 164 (178)
Q Consensus 91 lktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLmhvMMtkihhvGkVYH~rAkRQMAqSlGQiAKFk 164 (178)
+.....-|++-++++|.+-.. ++.|= .|+++-.-.+--.| |-++.|||+|..++-++.+.+
T Consensus 49 ~~dV~~WL~sLrL~KY~~~F~-----~~~~d-------~l~~LTeeDL~~lG-Vta~GaRrKlL~AI~~Lr~~k 109 (119)
T 2b6g_A 49 LKNIPMWLKSLRLHKYSDALS-----GTPWI-------ELIYLDDETLEKKG-VLALGARRKLLKAFGIVIDYK 109 (119)
T ss_dssp HHCHHHHHHHHTCHHHHHHHT-----TSCHH-------HHTTCCHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHCCChhHHHHHc-----cCCHH-------HHHhcCHHHHHHCC-CCccccHHHHHHHHHHHHhhh
Confidence 344556788899999988773 23441 23333334445566 889999999988776665554
No 24
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=21.45 E-value=1.5e+02 Score=18.35 Aligned_cols=39 Identities=18% Similarity=0.522 Sum_probs=27.3
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
++.+++.-..++..+++++.. +.|+.|..|++.| .|+.+
T Consensus 13 ~~~~~v~~~~TV~~LK~~i~~----------~~gip~~~qrL~~---~G~~L 51 (96)
T 3k9o_B 13 TITLEVEPSDTIENVKAKIQD----------KEGIPPDQQRLIF---AGKQL 51 (96)
T ss_dssp EEEEECCTTCBHHHHHHHHHH----------HHCCCGGGEEEEE---TTEEC
T ss_pred EEEEEECCCCCHHHHHHHHHh----------hhCCChhHEEEEE---CCEEC
Confidence 344555556678888887753 3489999999987 56654
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.33 E-value=1.4e+02 Score=17.76 Aligned_cols=39 Identities=18% Similarity=0.532 Sum_probs=27.7
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
++..++.-..++..+++++.. +.|+.|..|.+.| .|+.+
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~----------~~~ip~~~qrL~~---~g~~L 53 (85)
T 3n3k_B 15 TIILEVEPSDTIENVKAKIQD----------KEGIPPDQQRLIF---AGKQL 53 (85)
T ss_dssp EEEEECCTTCBHHHHHHHHHH----------HHCCCGGGEEEEE---TBEEC
T ss_pred EEEEEECCCCcHHHHHHHHHH----------HHCCCHHHEEEEE---CCeEC
Confidence 445566666778888887753 3589999999888 56654
No 26
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=20.48 E-value=15 Score=21.28 Aligned_cols=6 Identities=67% Similarity=1.320 Sum_probs=5.0
Q ss_pred ccccee
Q 030388 140 NVGKVY 145 (178)
Q Consensus 140 hvGkVY 145 (178)
||||+|
T Consensus 1 ~VGKiY 6 (23)
T 3dve_B 1 HMGKVY 6 (26)
T ss_dssp CCHHHH
T ss_pred ChHHHH
Confidence 788888
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=20.42 E-value=1.5e+02 Score=17.80 Aligned_cols=39 Identities=26% Similarity=0.534 Sum_probs=27.6
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
++.+++.-..++..+++++.. +.|+.|..|++-| .|+.+
T Consensus 24 ~~~~~v~~~~tV~~lK~~i~~----------~~gip~~~qrL~~---~G~~L 62 (88)
T 3dbh_I 24 EIEIDIEPTDKVERIKERVEE----------KEGIPPQQQRLIY---SGKQM 62 (88)
T ss_dssp EEEEEECTTCBHHHHHHHHHH----------HHCCCGGGCCEEE---TTEEC
T ss_pred EEEEEECCCCCHHHHHHHHHH----------HHCcCHHHEEEEE---CCeEC
Confidence 445566656678888888743 3589999999887 56654
No 28
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=20.23 E-value=1.6e+02 Score=18.06 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=28.5
Q ss_pred eeEEEEeecchHHHHHHHHhhhhhhHHHHHHhhcCCccceeeEEeeccCeee
Q 030388 80 TYYYELHVRSSLKTFRQRLRNSVLGHYLEKMKKGLHPQMQWISYVTQSGRLM 131 (178)
Q Consensus 80 tyyyelhvrsslktfrqrlr~s~~~hy~~~MkKGlHPQmQWISYVTQsGRLm 131 (178)
++.+++.-..++..+++++.. +.|+.|..|.+-| .|+++
T Consensus 17 ~~~~~v~~~~tV~~lK~~i~~----------~~gip~~~qrLi~---~Gk~L 55 (90)
T 4dwf_A 17 TRTFIVGAQMNVKEFKEHIAA----------SVSIPSEKQRLIY---QGRVL 55 (90)
T ss_dssp EEEEEEETTCBHHHHHHHHHH----------HHTCCGGGEEEEE---TTEEC
T ss_pred EEEEEECCCCCHHHHHHHHHH----------HhCCCHHHEEEEE---CCeEC
Confidence 455666667788888888743 3589999998887 67665
No 29
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.17 E-value=97 Score=21.15 Aligned_cols=26 Identities=8% Similarity=0.354 Sum_probs=21.8
Q ss_pred eEEeeee-eEEEEeecchHHHHHHHHh
Q 030388 74 ILFSIGT-YYYELHVRSSLKTFRQRLR 99 (178)
Q Consensus 74 ilfsigt-yyyelhvrsslktfrqrlr 99 (178)
|+..+|+ ||-|.-.....+.+..|+.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~ 98 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKN 98 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHH
Confidence 6778997 9999999988888887765
Done!