Query 030389
Match_columns 178
No_of_seqs 112 out of 146
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhg_A Mjogg, N-glycosylase/DN 97.0 0.0011 3.7E-08 54.0 5.6 70 103-174 111-185 (207)
2 3fhf_A Mjogg, N-glycosylase/DN 96.8 0.003 1E-07 52.3 7.1 74 98-173 113-191 (214)
3 3n0u_A Probable N-glycosylase/ 96.3 0.0067 2.3E-07 50.2 6.0 69 103-172 123-195 (219)
4 3i0w_A 8-oxoguanine-DNA-glycos 96.2 0.0031 1.1E-07 53.8 3.9 42 103-146 205-248 (290)
5 2h56_A DNA-3-methyladenine gly 96.2 0.008 2.7E-07 49.7 6.2 31 105-135 134-166 (233)
6 3s6i_A DNA-3-methyladenine gly 96.2 0.0033 1.1E-07 52.0 3.6 33 103-135 133-167 (228)
7 4e9f_A Methyl-CPG-binding doma 96.1 0.0033 1.1E-07 49.9 2.9 72 57-131 44-126 (161)
8 2yg9_A DNA-3-methyladenine gly 95.8 0.015 5.3E-07 47.8 6.2 33 103-135 140-174 (225)
9 4b21_A Probable DNA-3-methylad 95.8 0.0067 2.3E-07 50.4 3.9 32 104-135 145-178 (232)
10 1mpg_A ALKA, 3-methyladenine D 95.8 0.017 5.8E-07 48.7 6.3 31 103-133 201-233 (282)
11 1pu6_A 3-methyladenine DNA gly 95.2 0.016 5.4E-07 47.5 4.0 40 103-143 115-154 (218)
12 2xhi_A N-glycosylase/DNA lyase 95.1 0.039 1.3E-06 48.6 6.4 34 103-136 247-282 (360)
13 1kg2_A A/G-specific adenine gl 94.9 0.014 4.7E-07 47.8 2.8 38 106-144 106-143 (225)
14 3arc_U Photosystem II 12 kDa e 94.8 0.011 3.8E-07 43.6 1.9 42 105-151 22-63 (97)
15 2jhn_A ALKA, 3-methyladenine D 94.7 0.023 7.8E-07 48.3 4.0 30 104-133 205-235 (295)
16 2abk_A Endonuclease III; DNA-r 94.7 0.017 5.7E-07 46.8 2.8 25 105-129 105-129 (211)
17 2duy_A Competence protein come 94.4 0.028 9.4E-07 38.3 3.0 39 107-150 25-63 (75)
18 1orn_A Endonuclease III; DNA r 94.3 0.022 7.6E-07 46.8 2.8 25 105-129 109-133 (226)
19 1kea_A Possible G-T mismatches 94.1 0.024 8.2E-07 46.3 2.7 37 106-143 112-148 (221)
20 1s5l_U Photosystem II 12 kDa e 93.8 0.024 8.1E-07 44.4 1.9 41 105-150 59-99 (134)
21 2edu_A Kinesin-like protein KI 93.7 0.058 2E-06 38.7 3.7 42 108-150 39-80 (98)
22 2i5h_A Hypothetical protein AF 93.4 0.017 5.7E-07 48.2 0.4 65 78-149 106-171 (205)
23 3fsp_A A/G-specific adenine gl 92.8 0.19 6.6E-06 43.5 6.3 38 105-143 114-151 (369)
24 3n5n_X A/G-specific adenine DN 92.2 0.084 2.9E-06 45.4 3.2 37 107-144 126-163 (287)
25 2a1j_B DNA excision repair pro 91.5 0.23 7.9E-06 34.9 4.4 63 83-150 11-74 (91)
26 2ztd_A Holliday junction ATP-d 90.1 0.084 2.9E-06 43.7 1.0 29 104-132 83-111 (212)
27 1x2i_A HEF helicase/nuclease; 90.0 0.19 6.4E-06 33.3 2.6 22 108-129 45-66 (75)
28 1kft_A UVRC, excinuclease ABC 87.4 0.39 1.3E-05 32.7 2.8 18 111-128 26-43 (78)
29 1kft_A UVRC, excinuclease ABC 85.3 0.19 6.5E-06 34.3 0.3 47 82-129 29-76 (78)
30 1ixr_A Holliday junction DNA h 84.0 0.57 1.9E-05 37.9 2.6 26 106-131 69-94 (191)
31 2bcq_A DNA polymerase lambda; 83.7 0.53 1.8E-05 40.9 2.5 54 98-151 46-107 (335)
32 1cuk_A RUVA protein; DNA repai 81.5 0.78 2.7E-05 37.4 2.6 47 104-150 68-118 (203)
33 2w9m_A Polymerase X; SAXS, DNA 81.5 0.91 3.1E-05 41.8 3.3 24 105-128 93-116 (578)
34 2a1j_A DNA repair endonuclease 81.3 0.51 1.7E-05 31.5 1.2 41 107-147 2-43 (63)
35 1z00_A DNA excision repair pro 81.1 1.3 4.4E-05 30.7 3.2 46 105-150 15-61 (89)
36 1z00_A DNA excision repair pro 81.0 0.83 2.9E-05 31.7 2.2 24 107-130 49-72 (89)
37 1x2i_A HEF helicase/nuclease; 80.1 1.5 5.1E-05 28.7 3.2 46 105-150 10-56 (75)
38 3r8n_M 30S ribosomal protein S 80.0 1.3 4.5E-05 33.4 3.2 43 103-145 10-55 (114)
39 2a1j_B DNA excision repair pro 79.1 1.1 3.8E-05 31.3 2.4 22 108-129 63-84 (91)
40 3vdp_A Recombination protein R 76.1 1.4 4.7E-05 36.8 2.5 23 103-125 20-42 (212)
41 3j20_O 30S ribosomal protein S 74.8 2.8 9.4E-05 33.0 3.8 40 105-144 19-61 (148)
42 3u5c_S 40S ribosomal protein S 74.3 2.7 9.1E-05 33.0 3.6 41 105-145 26-69 (146)
43 2fmp_A DNA polymerase beta; nu 73.2 1.2 4.2E-05 38.5 1.6 33 98-130 46-78 (335)
44 1vq8_Y 50S ribosomal protein L 72.2 0.76 2.6E-05 38.5 0.0 22 107-128 13-34 (241)
45 3iz6_M 40S ribosomal protein S 72.2 2.5 8.4E-05 33.4 2.9 43 102-144 21-66 (152)
46 1z00_B DNA repair endonuclease 72.2 2.8 9.6E-05 29.7 3.0 43 105-147 14-57 (84)
47 2xzm_M RPS18E; ribosome, trans 71.8 2.1 7.3E-05 33.9 2.5 43 103-145 24-69 (155)
48 1vdd_A Recombination protein R 69.5 2.4 8.3E-05 35.7 2.5 22 104-125 7-28 (228)
49 2fmp_A DNA polymerase beta; nu 68.9 3 0.0001 36.1 3.0 24 105-128 94-117 (335)
50 2vqe_M 30S ribosomal protein S 68.0 2.3 8E-05 32.6 1.9 44 102-145 10-56 (126)
51 2ihm_A POL MU, DNA polymerase 66.7 3.4 0.00012 36.1 3.0 26 103-128 96-121 (360)
52 1ixr_A Holliday junction DNA h 66.0 4.9 0.00017 32.3 3.5 43 107-149 105-157 (191)
53 2bgw_A XPF endonuclease; hydro 64.6 3.8 0.00013 32.6 2.6 43 108-150 161-204 (219)
54 1wcn_A Transcription elongatio 64.2 0.58 2E-05 32.1 -2.0 52 87-140 17-69 (70)
55 3b0x_A DNA polymerase beta fam 63.8 3.9 0.00013 37.5 2.9 24 105-128 89-112 (575)
56 2ztd_A Holliday junction ATP-d 63.6 7 0.00024 32.1 4.1 42 108-149 122-175 (212)
57 1jms_A Terminal deoxynucleotid 62.4 4.6 0.00016 35.7 3.0 26 103-128 115-140 (381)
58 2ihm_A POL MU, DNA polymerase 62.1 1.8 6.3E-05 37.8 0.3 33 98-130 50-82 (360)
59 2bcq_A DNA polymerase lambda; 59.3 4.7 0.00016 34.9 2.4 22 107-128 94-115 (335)
60 2kp7_A Crossover junction endo 59.1 3.4 0.00012 29.4 1.3 29 98-126 47-75 (87)
61 3mab_A Uncharacterized protein 58.8 2.4 8.3E-05 30.7 0.4 40 107-146 2-44 (93)
62 3psf_A Transcription elongatio 56.1 8.2 0.00028 38.6 3.8 46 103-148 705-756 (1030)
63 1jms_A Terminal deoxynucleotid 54.6 2.9 0.0001 36.9 0.4 33 98-130 69-101 (381)
64 3oao_A Uncharacterized protein 51.1 13 0.00045 28.9 3.5 62 54-120 78-143 (147)
65 3psi_A Transcription elongatio 49.5 10 0.00034 38.6 3.3 46 103-148 702-753 (1219)
66 1ci4_A Protein (barrier-TO-aut 49.4 6.4 0.00022 28.7 1.4 20 110-129 19-38 (89)
67 3bqs_A Uncharacterized protein 47.2 10 0.00035 27.2 2.2 22 108-129 3-24 (93)
68 2nrt_A Uvrabc system protein C 45.1 11 0.00038 31.2 2.3 21 109-129 168-188 (220)
69 1cuk_A RUVA protein; DNA repai 43.4 13 0.00043 30.1 2.4 21 107-127 106-126 (203)
70 3bzc_A TEX; helix-turn-helix, 41.3 15 0.00051 35.6 3.0 43 106-149 505-547 (785)
71 4gfj_A Topoisomerase V; helix- 38.4 15 0.00053 34.3 2.4 22 108-129 467-488 (685)
72 1b22_A DNA repair protein RAD5 38.2 16 0.00053 27.2 2.0 43 87-129 35-78 (114)
73 2w9m_A Polymerase X; SAXS, DNA 37.8 12 0.00041 34.4 1.6 42 87-128 107-150 (578)
74 2bgw_A XPF endonuclease; hydro 36.3 20 0.0007 28.3 2.6 23 107-129 192-214 (219)
75 1vq8_Y 50S ribosomal protein L 36.1 7.6 0.00026 32.4 0.0 33 97-129 35-68 (241)
76 3bbn_M Ribosomal protein S13; 35.9 5.6 0.00019 31.3 -0.8 46 102-147 55-102 (145)
77 3c65_A Uvrabc system protein C 35.5 7.9 0.00027 32.2 0.0 42 109-151 173-215 (226)
78 3c1y_A DNA integrity scanning 35.0 20 0.00068 32.0 2.5 42 84-126 322-364 (377)
79 1exn_A 5'-exonuclease, 5'-nucl 33.7 17 0.00058 31.0 1.8 29 114-148 208-236 (290)
80 3o18_A C-phycocyanin alpha sub 32.0 29 0.001 27.1 2.8 51 52-103 15-65 (162)
81 2ziu_A MUS81 protein; helix-ha 27.2 34 0.0012 28.4 2.6 24 106-129 234-257 (311)
82 4glx_A DNA ligase; inhibitor, 26.9 40 0.0014 31.5 3.2 20 108-127 543-562 (586)
83 3ph0_A ASCE; type III secretio 26.6 75 0.0026 21.9 3.8 25 78-102 5-29 (67)
84 2c7l_B Phycoerythrocyanin beta 24.3 57 0.0019 25.7 3.2 51 52-103 15-65 (172)
85 2vml_A Phycocyanin alpha chain 24.2 48 0.0016 25.7 2.8 51 52-103 15-65 (162)
86 3q8k_A Flap endonuclease 1; he 23.9 32 0.0011 29.6 1.8 17 113-129 236-252 (341)
87 3q5w_A Protein CUT8; proteasom 23.8 2.8E+02 0.0095 23.3 7.6 16 159-174 129-144 (245)
88 3b0x_A DNA polymerase beta fam 23.7 24 0.00082 32.2 1.1 25 103-127 120-146 (575)
89 3p9z_A Uroporphyrinogen III co 23.6 83 0.0028 24.6 4.1 36 108-143 62-102 (229)
90 3c65_A Uvrabc system protein C 23.6 17 0.00058 30.2 0.0 23 105-128 201-223 (226)
91 3v57_A Phycoerythrin alpha sub 23.2 38 0.0013 26.5 2.0 50 53-103 16-65 (164)
92 3l0f_B C-phycocyanin beta chai 22.7 61 0.0021 25.5 3.1 50 53-103 16-65 (172)
93 2vml_B Phycocyanin beta chain; 22.7 65 0.0022 25.3 3.3 51 52-103 15-65 (172)
94 1rxw_A Flap structure-specific 22.0 38 0.0013 28.6 1.9 17 113-129 239-255 (336)
95 1gm5_A RECG; helicase, replica 21.8 30 0.001 33.1 1.3 19 110-128 116-134 (780)
96 2izo_A FEN1, flap structure-sp 21.4 39 0.0013 28.8 1.9 17 113-129 238-254 (346)
97 2owo_A DNA ligase; protein-DNA 21.4 51 0.0018 31.4 2.8 33 97-129 531-564 (671)
98 3ory_A Flap endonuclease 1; hy 21.1 39 0.0013 29.4 1.8 32 113-144 255-296 (363)
99 1kn1_A Allophycocyanin; helix- 20.5 61 0.0021 25.1 2.7 51 52-103 13-63 (160)
No 1
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.0011 Score=53.96 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=44.5
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhh-hCCCCCCccchhHHh-hh--hcCccc-ccchhhHHHHHHHHhhhhccCCC
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPDLAPFMSDEVCF-CS--FSFKFT-LLYSLFIYFYLTFVNGMEGYGGS 174 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~-~~--~~~~~~-l~ys~~~y~y~~~~~~i~~~g~~ 174 (178)
+...+.+.|++||||||-||++||.. ..++ ++ --|--.. .+ .|+.+. +.=+...-.|..+-+.++.+|+.
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~-~~-~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~ 185 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFD-LA-IIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASN 185 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCS-SC-CCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCC-cc-eecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999995 5532 22 2344333 32 243222 11122334688888888877754
No 2
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=96.80 E-value=0.003 Score=52.29 Aligned_cols=74 Identities=20% Similarity=0.152 Sum_probs=47.5
Q ss_pred HhhCccHHHHHHHhh-cccCcchHHHHHHHhhhCCCCCCcc-chhHHhhh---hcCcccccchhhHHHHHHHHhhhhccC
Q 030389 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPDLAPFM-SDEVCFCS---FSFKFTLLYSLFIYFYLTFVNGMEGYG 172 (178)
Q Consensus 98 f~~l~d~~~al~~L~-~LkGVGPATASaiLa~~~P~~~pFf-SDEa~~~~---~~~~~~l~ys~~~y~y~~~~~~i~~~g 172 (178)
|..+.++..+.+.|. +|+||||-||+.||.... ..+|+ -|-=..-+ .|+.+...-+++...|..+-..|+.+|
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444457888999999 999999999999998642 23565 66654432 343322111222346777777777666
Q ss_pred C
Q 030389 173 G 173 (178)
Q Consensus 173 ~ 173 (178)
.
T Consensus 191 ~ 191 (214)
T 3fhf_A 191 E 191 (214)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=96.27 E-value=0.0067 Score=50.24 Aligned_cols=69 Identities=20% Similarity=0.071 Sum_probs=41.1
Q ss_pred cHHHHHHHhh-cccCcchHHHHHHHhh-hCCCCCCccchhHHhhh--hcCcccccchhhHHHHHHHHhhhhccC
Q 030389 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPDLAPFMSDEVCFCS--FSFKFTLLYSLFIYFYLTFVNGMEGYG 172 (178)
Q Consensus 103 d~~~al~~L~-~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~~~--~~~~~~l~ys~~~y~y~~~~~~i~~~g 172 (178)
++..+.+.|+ +|+||||-||+.||.. ..++.+| ..+=+.+.+ .|+.+.+.-+.....|...-+.++.|+
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a 195 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVA 195 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHH
Confidence 6788999999 9999999999999975 3332323 233344432 343322211222345666655555543
No 4
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=96.22 E-value=0.0031 Score=53.83 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.2
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhh--hCCCCCCccchhHHhhhh
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEVCFCSF 146 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~~~~~ 146 (178)
+...+.+.|++||||||-||..||.. ..|+.+|. |=...-+.
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v~r~~ 248 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWVKKAM 248 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHHHHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHHHHHH
Confidence 56789999999999999999999865 67887786 76665543
No 5
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=96.22 E-value=0.008 Score=49.69 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.6
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhh--CCCCCC
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAY--APDLAP 135 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~~p 135 (178)
..+++.|++|+||||-||.+||... .|+.+|
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p 166 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS 166 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee
Confidence 4789999999999999999999874 554433
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.16 E-value=0.0033 Score=52.02 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=26.4
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhh--hCCCCCC
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAP 135 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~p 135 (178)
+...+++.|++|+||||-||..||.. ..|+.+|
T Consensus 133 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp 167 (228)
T 3s6i_A 133 SNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP 167 (228)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe
Confidence 34678999999999999999999976 4555433
No 7
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=96.05 E-value=0.0033 Score=49.91 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHH-HH------hhC----ccHHHHHHHhhcccCcchHHHHHH
Q 030389 57 NTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEK-AF------KSL----PDLTKAVSELTVLKGVGPATASAV 125 (178)
Q Consensus 57 tkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~-Af------~~l----~d~~~al~~L~~LkGVGPATASai 125 (178)
|+++-+.-+-.+|-. .-|+...+.+.+ +++|++..+- +| .+. ..+....+.|.+|+||||-||.+|
T Consensus 44 T~~~~v~~~~~~l~~--~~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE--KYPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH--HSCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH--HCCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 566666666666652 237877776655 4445443321 11 100 023445678899999999999999
Q ss_pred HhhhCC
Q 030389 126 LAAYAP 131 (178)
Q Consensus 126 La~~~P 131 (178)
+++..-
T Consensus 121 ~~F~~~ 126 (161)
T 4e9f_A 121 RIFCVN 126 (161)
T ss_dssp HHHTSS
T ss_pred HHHHCC
Confidence 998543
No 8
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.84 E-value=0.015 Score=47.80 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=26.9
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhhh--CCCCCC
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDLAP 135 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~~p 135 (178)
+...+++.|++|+||||-||..||... .|+.+|
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp 174 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS 174 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence 456789999999999999999999874 555434
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.81 E-value=0.0067 Score=50.38 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=26.1
Q ss_pred HHHHHHHhhcccCcchHHHHHHHhhh--CCCCCC
Q 030389 104 LTKAVSELTVLKGVGPATASAVLAAY--APDLAP 135 (178)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~--~P~~~p 135 (178)
...+++.|++||||||-||..||... .|+.+|
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fp 178 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMP 178 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee
Confidence 44789999999999999999999874 555434
No 10
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=95.77 E-value=0.017 Score=48.71 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=26.6
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhhh--CCCC
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDL 133 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~ 133 (178)
+...+++.|++|+||||-||..||... .|+.
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~ 233 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDV 233 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSC
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCc
Confidence 677899999999999999999999874 4543
No 11
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=95.19 E-value=0.016 Score=47.45 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=28.4
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHh
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCF 143 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~ 143 (178)
+...+.+.|++||||||-||.+||....-.. .|--|--..
T Consensus 115 ~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~vD~~v~ 154 (218)
T 1pu6_A 115 KQEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYSY 154 (218)
T ss_dssp HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHHH
T ss_pred cchHHHHHHHcCCCcCHHHHHHHHHHHCCCC-ccccCHHHH
Confidence 3456788999999999999999999753322 334454433
No 12
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=95.05 E-value=0.039 Score=48.62 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.7
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhh--hCCCCCCc
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPF 136 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pF 136 (178)
+...+++.|++|+||||-||..||.. ..|+.+|.
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv 282 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV 282 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe
Confidence 35689999999999999999999986 56766665
No 13
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=94.88 E-value=0.014 Score=47.81 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhh
Q 030389 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFC 144 (178)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~ 144 (178)
.+++.|++|+||||-||.+||....-.. -|.-|--..-
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~R 143 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVKR 143 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHHH
Confidence 4688999999999999999998743222 2346654443
No 14
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=94.80 E-value=0.011 Score=43.62 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=34.4
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcCccc
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSFKFT 151 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~~~~ 151 (178)
.+..+.|+.|+||||++|..|+. .-||-|=|-+.-++|+.++
T Consensus 22 tAs~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~Gig~~ 63 (97)
T 3arc_U 22 NTNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPGLTER 63 (97)
T ss_dssp TSCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTTCCHH
T ss_pred cCCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccCCCHH
Confidence 34567899999999999999999 3599997777778887643
No 15
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=94.75 E-value=0.023 Score=48.35 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=24.9
Q ss_pred HHHHHHHhhcccCcchHHHHHHHhhh-CCCC
Q 030389 104 LTKAVSELTVLKGVGPATASAVLAAY-APDL 133 (178)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~-~P~~ 133 (178)
...+.+.|++|+||||-||..||... .|+.
T Consensus 205 ~~e~~~~L~~lpGIG~~TA~~ill~~lg~d~ 235 (295)
T 2jhn_A 205 EEEAYEYLTSFKGIGRWTAELVLSIALGKNV 235 (295)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHccCCCc
Confidence 36789999999999999999999862 2544
No 16
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.66 E-value=0.017 Score=46.78 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~ 129 (178)
..+++.|++|+||||-||.+||...
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHH
Confidence 3567889999999999999999974
No 17
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=94.39 E-value=0.028 Score=38.32 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=31.9
Q ss_pred HHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcCcc
Q 030389 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~~~ 150 (178)
....|..++||||.+|..|+.-. +|-+-|-+..++|+.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~Gig~ 63 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKGIGP 63 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTTCCH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCCCCH
Confidence 45678899999999999999964 7878777777888754
No 18
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=94.31 E-value=0.022 Score=46.80 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.0
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~ 129 (178)
..+++.|++|+||||-||.+||...
T Consensus 109 p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 109 PRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp CSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3468899999999999999999874
No 19
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.15 E-value=0.024 Score=46.28 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=26.8
Q ss_pred HHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHh
Q 030389 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCF 143 (178)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~ 143 (178)
.+++.|++|+||||-||.+||....-.. -|--|--..
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~~~~-~~~vD~~v~ 148 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAFGKK-AAMVDANFV 148 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTTCCC-CCCCCHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhcCCC-cceecHHHH
Confidence 4678899999999999999999753322 234454443
No 20
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=93.81 E-value=0.024 Score=44.45 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcCcc
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~~~ 150 (178)
.+..+.|++|+||||++|.+|. ++.||=|=|=+.-++|+.+
T Consensus 59 tA~~~eL~~LpGiGp~~A~~II-----~~GpF~svedL~~V~GIg~ 99 (134)
T 1s5l_U 59 NTNIAAFIQYRGLYPTLAKLIV-----KNAPYESVEDVLNIPGLTE 99 (134)
T ss_dssp TSCGGGGGGSTTCTHHHHHHHH-----HTCCCSSGGGGGGCTTCCH
T ss_pred ccCHHHHHHCCCCCHHHHHHHH-----HcCCCCCHHHHHhCCCCCH
Confidence 3457789999999999999999 3568999555556888764
No 21
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.68 E-value=0.058 Score=38.73 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcCcc
Q 030389 108 VSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~~~ 150 (178)
...|..++||||.+|..|+..... .-+|-+=|-+..++|+.+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~-~g~f~s~edL~~v~Gig~ 80 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWREL-HGPFSQVEDLERVEGITG 80 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHH-HCCCSSGGGGGGSTTCCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHh-cCCcCCHHHHHhCCCCCH
Confidence 567889999999999999998643 237877666777888654
No 22
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=93.36 E-value=0.017 Score=48.19 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=42.9
Q ss_pred hHHHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcchHHHHHHHhhhCCCCCCccc-hhHHhhhhcCc
Q 030389 78 LLVFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFMS-DEVCFCSFSFK 149 (178)
Q Consensus 78 L~~lv~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfS-DEa~~~~~~~~ 149 (178)
+.+.|+.|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-| ||...-+.|++
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~GIg 171 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKGIQ 171 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTTCC
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCCCC
Confidence 33445555444443 1 3322334667888999999999999999998654 59999 55545577743
No 23
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=92.79 E-value=0.19 Score=43.52 Aligned_cols=38 Identities=32% Similarity=0.283 Sum_probs=27.4
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCF 143 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~ 143 (178)
..+++.|++|+||||-||.+||+...-.. -|.-|--..
T Consensus 114 p~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~ 151 (369)
T 3fsp_A 114 PDDPDEFSRLKGVGPYTVGAVLSLAYGVP-EPAVDGNVM 151 (369)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHHHHHCCC-CCCCCHHHH
T ss_pred hhHHHHHhcCCCcCHHHHHHHHHHHCCCC-cccccHHHH
Confidence 34788999999999999999999854332 234454433
No 24
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.24 E-value=0.084 Score=45.40 Aligned_cols=37 Identities=24% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHhhc-ccCcchHHHHHHHhhhCCCCCCccchhHHhh
Q 030389 107 AVSELTV-LKGVGPATASAVLAAYAPDLAPFMSDEVCFC 144 (178)
Q Consensus 107 al~~L~~-LkGVGPATASaiLa~~~P~~~pFfSDEa~~~ 144 (178)
.++.|.+ |+||||-||.+||....-.. .|.-|--..-
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V~R 163 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNVAR 163 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHHHH
Confidence 5788887 99999999999999864332 3456665543
No 25
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.52 E-value=0.23 Score=34.88 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=38.0
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcchHHHHHHHhhhC-CCCCCccchhHHhhhhcCcc
Q 030389 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYA-PDLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~~-P~~~pFfSDEa~~~~~~~~~ 150 (178)
+.++++.++.-.+.-+ ....+..|+.++||||.||-.|+..+. .+.+--.+-|.+..++|+..
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~ 74 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGP 74 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCS
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCH
Confidence 4566666665544433 344677888999999999999998653 22222223344555677654
No 26
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=90.06 E-value=0.084 Score=43.69 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHhhcccCcchHHHHHHHhhhCCC
Q 030389 104 LTKAVSELTVLKGVGPATASAVLAAYAPD 132 (178)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~~P~ 132 (178)
.+.-...|..++||||.||-+||+...|+
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 34445557777888888888888776664
No 27
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=90.03 E-value=0.19 Score=33.27 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=15.8
Q ss_pred HHHhhcccCcchHHHHHHHhhh
Q 030389 108 VSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (178)
.+.|++++||||.+|..|.+..
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHH
Confidence 4567777777777777777765
No 28
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=87.35 E-value=0.39 Score=32.67 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=10.1
Q ss_pred hhcccCcchHHHHHHHhh
Q 030389 111 LTVLKGVGPATASAVLAA 128 (178)
Q Consensus 111 L~~LkGVGPATASaiLa~ 128 (178)
|..++||||.||-.|+..
T Consensus 26 L~~I~gIG~~~A~~Ll~~ 43 (78)
T 1kft_A 26 LETIEGVGPKRRQMLLKY 43 (78)
T ss_dssp GGGCTTCSSSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH
Confidence 445555555555555554
No 29
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=85.31 E-value=0.19 Score=34.27 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=31.5
Q ss_pred hhhCCHHHHHHHHHHHHhhCccHHH-HHHHhhcccCcchHHHHHHHhhh
Q 030389 82 VSSLDDSSVKSASEKAFKSLPDLTK-AVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 82 v~sN~~~~V~~~t~~Af~~l~d~~~-al~~L~~LkGVGPATASaiLa~~ 129 (178)
|..-.+...+++.+ .|..+.++.. ..+.|++++||||.+|..|.+..
T Consensus 29 I~gIG~~~A~~Ll~-~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 29 IEGVGPKRRQMLLK-YMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CTTCSSSHHHHHHH-HHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 44444555555553 3654434433 37789999999999999998765
No 30
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=84.00 E-value=0.57 Score=37.90 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=16.8
Q ss_pred HHHHHhhcccCcchHHHHHHHhhhCC
Q 030389 106 KAVSELTVLKGVGPATASAVLAAYAP 131 (178)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P 131 (178)
..+..|..++||||.||-+||+.+.+
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 33445666777777777777776555
No 31
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=83.72 E-value=0.53 Score=40.89 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=32.9
Q ss_pred HhhCccHHHHHHHhhcccCcchHHHHHHHhhhCCCCCCcc--------chhHHhhhhcCccc
Q 030389 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFM--------SDEVCFCSFSFKFT 151 (178)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~P~~~pFf--------SDEa~~~~~~~~~~ 151 (178)
++.+|..-..+..|++|+|||+.||..|--...-...... .=+.|..|+|++++
T Consensus 46 l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k 107 (335)
T 2bcq_A 46 LKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTK 107 (335)
T ss_dssp HHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHH
T ss_pred HHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHH
Confidence 4455533334556899999999999999877432221111 22345567887653
No 32
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=81.54 E-value=0.78 Score=37.36 Aligned_cols=47 Identities=21% Similarity=0.100 Sum_probs=29.9
Q ss_pred HHHHHHHhhcccCcchHHHHHHHhhhCCCC---CCcc-chhHHhhhhcCcc
Q 030389 104 LTKAVSELTVLKGVGPATASAVLAAYAPDL---APFM-SDEVCFCSFSFKF 150 (178)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~~P~~---~pFf-SDEa~~~~~~~~~ 150 (178)
-+.-+..|..++||||.+|-+||+.+.|+. ...- +-|....+||+..
T Consensus 68 ek~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~ 118 (203)
T 1cuk_A 68 ERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGK 118 (203)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCH
Confidence 344556788899999999999999876632 1112 2233444777654
No 33
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=81.45 E-value=0.91 Score=41.85 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.8
Q ss_pred HHHHHHhhcccCcchHHHHHHHhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (178)
...+..|+++.||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 458889999999999999999986
No 34
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=81.34 E-value=0.51 Score=31.49 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=28.4
Q ss_pred HHHHhhcccCcchHHHHHHHhhhC-CCCCCccchhHHhhhhc
Q 030389 107 AVSELTVLKGVGPATASAVLAAYA-PDLAPFMSDEVCFCSFS 147 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~-P~~~pFfSDEa~~~~~~ 147 (178)
+...|..++||||.+.-.+|.-+. -+.+.=.|-|-+..+.|
T Consensus 2 ~~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig 43 (63)
T 2a1j_A 2 PQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 43 (63)
T ss_dssp CCHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS
T ss_pred HHhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC
Confidence 346788999999999999998632 22344456555555555
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=81.08 E-value=1.3 Score=30.70 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhhCC-CCCCccchhHHhhhhcCcc
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAYAP-DLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P-~~~pFfSDEa~~~~~~~~~ 150 (178)
...+..|+.++||||.+|-.|+..+.. +.+--.+-|.+..++|+.+
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~ 61 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGP 61 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCH
Confidence 345667889999999999999987532 1122223445555777653
No 36
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=80.95 E-value=0.83 Score=31.68 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.8
Q ss_pred HHHHhhcccCcchHHHHHHHhhhC
Q 030389 107 AVSELTVLKGVGPATASAVLAAYA 130 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~ 130 (178)
..+.|++++|||+.+|..|.+...
T Consensus 49 ~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 49 SREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999863
No 37
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=80.10 E-value=1.5 Score=28.74 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=29.4
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhhCC-CCCCccchhHHhhhhcCcc
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAYAP-DLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P-~~~pFfSDEa~~~~~~~~~ 150 (178)
......|+.++||||.+|..|+..+.. +.+---+-|.+..++|+.+
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~ 56 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGE 56 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCH
Confidence 344567899999999999999986522 1111123344555677653
No 38
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=80.03 E-value=1.3 Score=33.38 Aligned_cols=43 Identities=35% Similarity=0.348 Sum_probs=32.3
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhhh--CCCC-CCccchhHHhhh
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEVCFCS 145 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~ 145 (178)
+-+...-+|+.++|||+.||..|+... +|+. +=-.+||-+..+
T Consensus 10 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l 55 (114)
T 3r8n_M 10 DHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTL 55 (114)
T ss_dssp CSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHH
T ss_pred CCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHH
Confidence 334455678999999999999999984 5654 667788766653
No 39
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=79.06 E-value=1.1 Score=31.31 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.0
Q ss_pred HHHhhcccCcchHHHHHHHhhh
Q 030389 108 VSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (178)
.+.|++++|||+.+|..|++..
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 5789999999999999999886
No 40
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=76.06 E-value=1.4 Score=36.76 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=19.8
Q ss_pred cHHHHHHHhhcccCcchHHHHHH
Q 030389 103 DLTKAVSELTVLKGVGPATASAV 125 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASai 125 (178)
.+.+.++.|.+|+||||-||-=+
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH
Confidence 37788999999999999999754
No 41
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.79 E-value=2.8 Score=33.02 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhh--CCCC-CCccchhHHhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEVCFC 144 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~ 144 (178)
+...-+||.++|||+.||-.|+... +|+. +=-.+||-+..
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~ 61 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHH
Confidence 4455678999999999999999884 6654 67788876665
No 42
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=74.29 E-value=2.7 Score=33.03 Aligned_cols=41 Identities=27% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhh--CCCC-CCccchhHHhhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEVCFCS 145 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~ 145 (178)
+...-+||.++|||+.||-.|+... +|+. +=-.+||-...+
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l 69 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERI 69 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHH
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHH
Confidence 3445578999999999999999984 5654 667888766653
No 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=73.21 E-value=1.2 Score=38.49 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=24.3
Q ss_pred HhhCccHHHHHHHhhcccCcchHHHHHHHhhhC
Q 030389 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (178)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (178)
++.+|..-..+..|++|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 455553333455689999999999999988754
No 44
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=72.25 E-value=0.76 Score=38.50 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=0.0
Q ss_pred HHHHhhcccCcchHHHHHHHhh
Q 030389 107 AVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (178)
....|..++||||.+|-.|+..
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp ----------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHc
Confidence 3456778889999999888876
No 45
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.16 E-value=2.5 Score=33.44 Aligned_cols=43 Identities=26% Similarity=0.127 Sum_probs=32.4
Q ss_pred ccHHHHHHHhhcccCcchHHHHHHHhhh--CCCC-CCccchhHHhh
Q 030389 102 PDLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEVCFC 144 (178)
Q Consensus 102 ~d~~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~ 144 (178)
|+-+...-+||.++|||+.||-.|+... +|+. +=-.+||-...
T Consensus 21 ~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~ 66 (152)
T 3iz6_M 21 DGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDR 66 (152)
T ss_dssp CCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHH
T ss_pred CCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHH
Confidence 3445556678999999999999999984 5543 66778766664
No 46
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.16 E-value=2.8 Score=29.67 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=30.2
Q ss_pred HHHHHHhhcccCcchHHHHHHHhhh-CCCCCCccchhHHhhhhc
Q 030389 105 TKAVSELTVLKGVGPATASAVLAAY-APDLAPFMSDEVCFCSFS 147 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~-~P~~~pFfSDEa~~~~~~ 147 (178)
..+...|..++||||.+.-.||.-+ ..+.+.=.|-|-+..+.|
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig 57 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 57 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC
Confidence 3567889999999999999999863 222344556555555555
No 47
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=71.84 E-value=2.1 Score=33.88 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=32.6
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhhh--CCCC-CCccchhHHhhh
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEVCFCS 145 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~ 145 (178)
+-+...-+|+.++|||+.||-.|+... +|+. +=-.+||-+..+
T Consensus 24 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l 69 (155)
T 2xzm_M 24 GKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKI 69 (155)
T ss_dssp CSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHH
T ss_pred CCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHH
Confidence 334455688999999999999999984 5553 677888777653
No 48
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=69.49 E-value=2.4 Score=35.66 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.8
Q ss_pred HHHHHHHhhcccCcchHHHHHH
Q 030389 104 LTKAVSELTVLKGVGPATASAV 125 (178)
Q Consensus 104 ~~~al~~L~~LkGVGPATASai 125 (178)
+.+-++.|.+|+||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 5678999999999999999744
No 49
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=68.89 E-value=3 Score=36.09 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.2
Q ss_pred HHHHHHhhcccCcchHHHHHHHhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (178)
..++..|++++||||.||..+-.-
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 578999999999999999988554
No 50
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=67.98 E-value=2.3 Score=32.60 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=32.3
Q ss_pred ccHHHHHHHhhcccCcchHHHHHHHhhh--CCCC-CCccchhHHhhh
Q 030389 102 PDLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEVCFCS 145 (178)
Q Consensus 102 ~d~~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~ 145 (178)
|+-+...-+|+.++|||+.||..|+... +|+. +=-.+||-+..+
T Consensus 10 ~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l 56 (126)
T 2vqe_M 10 PRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL 56 (126)
T ss_dssp CCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHH
T ss_pred CCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHH
Confidence 3334455678999999999999999984 5653 666787776653
No 51
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=66.71 E-value=3.4 Score=36.10 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.3
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhh
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~ 128 (178)
....+|..|+++.||||.||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35678999999999999999988554
No 52
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=65.98 E-value=4.9 Score=32.35 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHhhcccCcchHHHHHHHhhhCCCCCCc----------cchhHHhhhhcCc
Q 030389 107 AVSELTVLKGVGPATASAVLAAYAPDLAPF----------MSDEVCFCSFSFK 149 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pF----------fSDEa~~~~~~~~ 149 (178)
-.+.|++++|||+.||--|..-......++ ..+|+..++.+++
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~~~~~~~~~~~~~~ea~~AL~~LG 157 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALAALG 157 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC----------------------
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHcC
Confidence 467899999999999998876543222111 1257777766554
No 53
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=64.62 E-value=3.8 Score=32.60 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHhhcccCcchHHHHHHHhhhCC-CCCCccchhHHhhhhcCcc
Q 030389 108 VSELTVLKGVGPATASAVLAAYAP-DLAPFMSDEVCFCSFSFKF 150 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P-~~~pFfSDEa~~~~~~~~~ 150 (178)
...|..++||||.+|-.|+.-+.. +.+--.+-|-+..++|++.
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~ 204 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGE 204 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCH
Confidence 446889999999999999997532 2222234455666777654
No 54
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=64.19 E-value=0.58 Score=32.10 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhcccCcchHHHHHHHhhhCCCCCCccchh
Q 030389 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140 (178)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDE 140 (178)
+..+.+....++..+.|+. .+.+.|+.++|++.++|..|.....- +|+|.||
T Consensus 17 ~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 17 RDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 3334444444443333332 35778888888888888887776532 4677554
No 55
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=63.78 E-value=3.9 Score=37.46 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred HHHHHHhhcccCcchHHHHHHHhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (178)
...+..|+++.||||.||-.|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 457889999999999999999886
No 56
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=63.64 E-value=7 Score=32.07 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHhhcccCcchHHHHHHHhhhCCCCCC-----------c-cchhHHhhhhcCc
Q 030389 108 VSELTVLKGVGPATASAVLAAYAPDLAP-----------F-MSDEVCFCSFSFK 149 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~p-----------F-fSDEa~~~~~~~~ 149 (178)
.+.|++++|||+-||--|..-......+ = ..+|+..++.+++
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~kl~~~~~~~~~~~~~~~~~~ea~~AL~~LG 175 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLG 175 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTTCC-------------CCHHHHHHHHHHTT
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhccccccccccccCcccHHHHHHHHHHcC
Confidence 5789999999999999877543222110 0 2367888876665
No 57
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.37 E-value=4.6 Score=35.65 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.2
Q ss_pred cHHHHHHHhhcccCcchHHHHHHHhh
Q 030389 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~ 128 (178)
....+|..|+++.||||.||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 35578999999999999999988654
No 58
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=62.08 E-value=1.8 Score=37.83 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=23.9
Q ss_pred HhhCccHHHHHHHhhcccCcchHHHHHHHhhhC
Q 030389 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (178)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (178)
++.+|..-..+..|++|+|||+.||..|--...
T Consensus 50 l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 50 LKSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 445553333444599999999999999988754
No 59
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=59.25 E-value=4.7 Score=34.86 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHhhcccCcchHHHHHHHhh
Q 030389 107 AVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (178)
.++.|+++.||||.||..+-.-
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHHhcCCCcCHHHHHHHHHc
Confidence 7888999999999999988654
No 60
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=59.07 E-value=3.4 Score=29.43 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=20.6
Q ss_pred HhhCccHHHHHHHhhcccCcchHHHHHHH
Q 030389 98 FKSLPDLTKAVSELTVLKGVGPATASAVL 126 (178)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiL 126 (178)
++..|..-...+.+..|+||||-++.-|=
T Consensus 47 Lk~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 47 LQRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 44555444455666789999999998763
No 61
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=58.83 E-value=2.4 Score=30.73 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=26.0
Q ss_pred HHHHhhcccCcchHHHHHHHhhhCCCCCCc---cchhHHhhhh
Q 030389 107 AVSELTVLKGVGPATASAVLAAYAPDLAPF---MSDEVCFCSF 146 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pF---fSDEa~~~~~ 146 (178)
+|..|+.|++|||+++-.+-.++-.+..-+ =++|+|.-+.
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk 44 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIW 44 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHH
Confidence 345688999999999999888853322112 2367776643
No 62
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=56.07 E-value=8.2 Score=38.57 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=31.9
Q ss_pred cHHHH------HHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcC
Q 030389 103 DLTKA------VSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSF 148 (178)
Q Consensus 103 d~~~a------l~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~ 148 (178)
|+-.| -..|.-+.||||..|.+|+.-..-..-||-|=+-+.-++|+
T Consensus 705 diNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~i 756 (1030)
T 3psf_A 705 EVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNIL 756 (1030)
T ss_dssp EHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHTTSS
T ss_pred cHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhcCCc
Confidence 55555 67888999999999999998763334577764444434443
No 63
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=54.60 E-value=2.9 Score=36.89 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.9
Q ss_pred HhhCccHHHHHHHhhcccCcchHHHHHHHhhhC
Q 030389 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (178)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (178)
++.++..-..+..|++|+|||+.||..|--...
T Consensus 69 l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 69 LKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 455554333444599999999999999987754
No 64
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=51.05 E-value=13 Score=28.86 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHH--HHHHHHHHHH-hhCccHHHHHHHhh-cccCcchH
Q 030389 54 PHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDS--SVKSASEKAF-KSLPDLTKAVSELT-VLKGVGPA 120 (178)
Q Consensus 54 ~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~--~V~~~t~~Af-~~l~d~~~al~~L~-~LkGVGPA 120 (178)
.|+|.+||..|...==+ |.-.+++..++.= ....+++.-- +..|.+.+.+..+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 58999999999997554 6666777777642 2222332222 34566777777777 69999887
No 65
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=49.46 E-value=10 Score=38.63 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred cHHHH------HHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcC
Q 030389 103 DLTKA------VSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSF 148 (178)
Q Consensus 103 d~~~a------l~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~ 148 (178)
|+-.| -..|.-+.||||..|.+|+....-..-||-|=+-+.-++|+
T Consensus 702 diNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~i 753 (1219)
T 3psi_A 702 EVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNIL 753 (1219)
T ss_dssp EHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCS
T ss_pred cHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCc
Confidence 56556 67888999999999999998753223467663333334443
No 66
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.45 E-value=6.4 Score=28.69 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.5
Q ss_pred HhhcccCcchHHHHHHHhhh
Q 030389 110 ELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 110 ~L~~LkGVGPATASaiLa~~ 129 (178)
.+++|+||||+++--+-.-.
T Consensus 19 ~V~evpGIG~~~~~~L~~~G 38 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERG 38 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTT
T ss_pred CcccCCCcCHHHHHHHHHcC
Confidence 47899999999998877643
No 67
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=47.21 E-value=10 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.6
Q ss_pred HHHhhcccCcchHHHHHHHhhh
Q 030389 108 VSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (178)
+..|+.|++|||+++-.+-.++
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vG 24 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTT
T ss_pred hHHhhcCCCCCHHHHHHHHHcC
Confidence 3457889999999998888774
No 68
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=45.05 E-value=11 Score=31.24 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.3
Q ss_pred HHhhcccCcchHHHHHHHhhh
Q 030389 109 SELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (178)
..|..++||||.||-.+|.-+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc
Confidence 467789999999999999864
No 69
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=43.44 E-value=13 Score=30.13 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.0
Q ss_pred HHHHhhcccCcchHHHHHHHh
Q 030389 107 AVSELTVLKGVGPATASAVLA 127 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa 127 (178)
-.+.|++++|||+.||--|..
T Consensus 106 d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 106 EVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp CHHHHHTSTTCCHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHH
Confidence 467899999999999998864
No 70
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=41.32 E-value=15 Score=35.61 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=31.9
Q ss_pred HHHHHhhcccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcCc
Q 030389 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSFK 149 (178)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~~ 149 (178)
+....|..++||||.+|..|+.--. ..-||-|=|-+.-++|+.
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR~-~~G~f~sr~~L~~V~giG 547 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHRD-ANGAFRTRDELKKVSRLG 547 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH-HHCCCSSGGGGGGSTTCC
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHHH-hcCCCCCHHHHHhcCCCC
Confidence 3457888999999999999998743 345888866555555544
No 71
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=38.44 E-value=15 Score=34.33 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.2
Q ss_pred HHHhhcccCcchHHHHHHHhhh
Q 030389 108 VSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (178)
...|+.++||||+||.-+|--+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkF 488 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKY 488 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHh
Confidence 4789999999999999999753
No 72
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=38.21 E-value=16 Score=27.20 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhcccCcchHHHHHHHhhh
Q 030389 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~ 129 (178)
+..+++.-..+|....++. +.-+.|++++|||+++|--|+.+.
T Consensus 35 ~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 35 ANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 5566666666665544432 246789999999999999999985
No 73
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=37.82 E-value=12 Score=34.37 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhCccHHHHHH--HhhcccCcchHHHHHHHhh
Q 030389 87 DSSVKSASEKAFKSLPDLTKAVS--ELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~~al~--~L~~LkGVGPATASaiLa~ 128 (178)
+..++.+-..+|..+.|+..|+. .|++++|||+-||.-|+..
T Consensus 107 pk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 107 PKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 44444444444455556777653 7889999999999998554
No 74
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=36.30 E-value=20 Score=28.26 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHhhcccCcchHHHHHHHhhh
Q 030389 107 AVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (178)
..+.|.+++|||+.+|..|....
T Consensus 192 ~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 192 SKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35678999999999999998764
No 75
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=36.06 E-value=7.6 Score=32.38 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhcccCcchHHHHHHHhhh
Q 030389 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 97 Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~ 129 (178)
+|..+.++. +..+.|++++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 454444443 347789999999999999998764
No 76
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.85 E-value=5.6 Score=31.33 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=32.0
Q ss_pred ccHHHHHHHhhcccCcchHHHHHHHhhhC-CC-CCCccchhHHhhhhc
Q 030389 102 PDLTKAVSELTVLKGVGPATASAVLAAYA-PD-LAPFMSDEVCFCSFS 147 (178)
Q Consensus 102 ~d~~~al~~L~~LkGVGPATASaiLa~~~-P~-~~pFfSDEa~~~~~~ 147 (178)
|+-+...-.|+.++|||+.||..|+.... |+ .+--.+||-+..+-.
T Consensus 55 p~~K~v~~aLt~IyGIG~~~A~~I~~~~gI~~~rv~~Lte~ei~~l~~ 102 (145)
T 3bbn_M 55 PNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRK 102 (145)
T ss_dssp CCSSBTTTGGGGSTTCCSSTTTGGGTTTTCCSCBTTSCCSSTTHHHHS
T ss_pred CCCCEEEEeeeeecCccHHHHHHHHHHcCCCceEcCCCCHHHHHHHHH
Confidence 34455566789999999999999998632 32 255667766655444
No 77
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=35.48 E-value=7.9 Score=32.18 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHhhcccCcchHHHHHHHhhhCC-CCCCccchhHHhhhhcCccc
Q 030389 109 SELTVLKGVGPATASAVLAAYAP-DLAPFMSDEVCFCSFSFKFT 151 (178)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~~P-~~~pFfSDEa~~~~~~~~~~ 151 (178)
..|..++||||.||-.||.-+.- +.+-=-|-|-+..+ |+...
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~V-GIG~~ 215 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRA 215 (226)
T ss_dssp --------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHc-CCCHH
Confidence 46789999999999999987432 22111133444456 65543
No 78
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=35.03 E-value=20 Score=32.04 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=26.0
Q ss_pred hCCHHHHHHHHHHHHhhCccH-HHHHHHhhcccCcchHHHHHHH
Q 030389 84 SLDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVL 126 (178)
Q Consensus 84 sN~~~~V~~~t~~Af~~l~d~-~~al~~L~~LkGVGPATASaiL 126 (178)
.-++..++... +-|..+..+ .+.++.|.+..|||+.+|..|-
T Consensus 322 rl~~~iae~Lv-~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 322 RIPLSIGYNVV-RMFKTLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp CCCHHHHHHHH-HHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHH-HHhCCHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 34455555554 345554443 3457788888888888887764
No 79
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=33.70 E-value=17 Score=31.01 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=20.4
Q ss_pred ccCcchHHHHHHHhhhCCCCCCccchhHHhhhhcC
Q 030389 114 LKGVGPATASAVLAAYAPDLAPFMSDEVCFCSFSF 148 (178)
Q Consensus 114 LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~~~ 148 (178)
++||||-||.-+|.-+.. =|++++.+...
T Consensus 208 VpGIG~KTA~kLL~~~gs------le~i~~~~~~~ 236 (290)
T 1exn_A 208 VEGIGAKRGYNIIREFGN------VLDIIDQLPLP 236 (290)
T ss_dssp CTTCCHHHHHHHHHHHCS------HHHHHHHCSCS
T ss_pred CCcCCHhHHHHHHHHcCC------HHHHHHHHHHh
Confidence 899999999999986532 14555554443
No 80
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=31.96 E-value=29 Score=27.07 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 52 PNPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
..+|++..||..|-.. +..|.-|-..-+.+.+|.+..|+++..+-|...|+
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~~~~~~P~ 65 (162)
T 3o18_A 15 QGRFLSNTELQAVDGR-FKRAVASMEAARALTNNAQSLIDGAAQAVYQKFPY 65 (162)
T ss_dssp TTCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGG
T ss_pred cCCCCCHHHHHHHHHH-HhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcC
Confidence 3579999999998775 45788888889999999999999999999998885
No 81
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=27.15 E-value=34 Score=28.45 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred HHHHHhhcccCcchHHHHHHHhhh
Q 030389 106 KAVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (178)
..+..|..++||+|..|.+|+..+
T Consensus 234 ~~~~mL~~IpGVs~~~A~~I~~~y 257 (311)
T 2ziu_A 234 VFARQLMQISGVSGDKAAAVLEHY 257 (311)
T ss_dssp HHHHHHTTBTTCCHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHC
Confidence 357889999999999999999884
No 82
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.93 E-value=40 Score=31.53 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=11.7
Q ss_pred HHHhhcccCcchHHHHHHHh
Q 030389 108 VSELTVLKGVGPATASAVLA 127 (178)
Q Consensus 108 l~~L~~LkGVGPATASaiLa 127 (178)
.+.|..+.||||-+|..|..
T Consensus 543 ~e~l~~i~giG~~~A~si~~ 562 (586)
T 4glx_A 543 IEELQKVPDVGIVVASHVHN 562 (586)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHH
Confidence 45555666666666655554
No 83
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=26.58 E-value=75 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.1
Q ss_pred hHHHhhhCCHHHHHHHHHHHHhhCc
Q 030389 78 LLVFVSSLDDSSVKSASEKAFKSLP 102 (178)
Q Consensus 78 L~~lv~sN~~~~V~~~t~~Af~~l~ 102 (178)
|-+.++++++..|+++..+-++.+.
T Consensus 5 LE~~L~~~~~~~~~~i~~~L~qAl~ 29 (67)
T 3ph0_A 5 LETRLSGADPVFARELHAQLVQALG 29 (67)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5577888888889988877765544
No 84
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=24.27 E-value=57 Score=25.69 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 52 PNPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
..+|++..||..|-.. +..|.-|-..-+.+.+|.+..|.++.++-|+..|+
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~l~~~~P~ 65 (172)
T 2c7l_B 15 KGAYLSNDEINALQAI-VADSNKRLDVVNRLTSNASSIVANAYRALVAERPQ 65 (172)
T ss_dssp TTCCCCHHHHHHHHHH-HHSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHH
T ss_pred cCCCCCHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 4689999999998775 56778888888999999999999999999988875
No 85
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=24.18 E-value=48 Score=25.75 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 52 PNPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
..+|++..||..|-.. +..|.-|-..-+.+.+|.+..|.++.++-|+..|+
T Consensus 15 ~gRyls~~eL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~l~~~~P~ 65 (162)
T 2vml_A 15 QGRFLNNTELQAANGR-FQRATASMEAARALTSNADSLVKGAVQEVYNKFPY 65 (162)
T ss_dssp TTCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSGG
T ss_pred cCCCCCHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3579999999998775 45678888888999999999999999999998885
No 86
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=23.91 E-value=32 Score=29.64 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=14.7
Q ss_pred cccCcchHHHHHHHhhh
Q 030389 113 VLKGVGPATASAVLAAY 129 (178)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (178)
.++||||-||.-+|.-+
T Consensus 236 gipGiG~KtA~kll~~~ 252 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKH 252 (341)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHc
Confidence 38999999999999864
No 87
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=23.83 E-value=2.8e+02 Score=23.33 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhccCCC
Q 030389 159 YFYLTFVNGMEGYGGS 174 (178)
Q Consensus 159 y~y~~~~~~i~~~g~~ 174 (178)
-....|++++-+|+..
T Consensus 129 ~~L~eFl~~L~Df~~~ 144 (245)
T 3q5w_A 129 EKYMAVLHALNDMVPC 144 (245)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4566778887777643
No 88
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=23.74 E-value=24 Score=32.21 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=19.6
Q ss_pred cHHHHH--HHhhcccCcchHHHHHHHh
Q 030389 103 DLTKAV--SELTVLKGVGPATASAVLA 127 (178)
Q Consensus 103 d~~~al--~~L~~LkGVGPATASaiLa 127 (178)
++..|+ .-|++++|||+-||--|+.
T Consensus 120 ~l~~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 120 KLKAALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCCCCccHHHHHHH
Confidence 566665 3589999999999998854
No 89
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=23.58 E-value=83 Score=24.62 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=18.7
Q ss_pred HHHhh--cccCcchHHHHHHHhhhC-CCCCC--ccchhHHh
Q 030389 108 VSELT--VLKGVGPATASAVLAAYA-PDLAP--FMSDEVCF 143 (178)
Q Consensus 108 l~~L~--~LkGVGPATASaiLa~~~-P~~~p--FfSDEa~~ 143 (178)
+..+. ++-.|||+||.++-..+- ++.+| |-+++..+
T Consensus 62 ~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~p~~~~~e~L~~ 102 (229)
T 3p9z_A 62 LKMLQNIPAYALSEPTAKTLQDHHFKVAFMGEKAHGKEFVQ 102 (229)
T ss_dssp HHHHHTSCEEESSHHHHHHHHHTTCCBCCCCC---------
T ss_pred hHHHcCCcEEEECHHHHHHHHHcCCCeeecCCcccHHHHHH
Confidence 34454 455899999999988753 33344 43444333
No 90
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=23.56 E-value=17 Score=30.15 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHhhcccCcchHHHHHHHhh
Q 030389 105 TKAVSELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (178)
.+.++.|+++ |||+.+|..|...
T Consensus 201 ~As~eeL~~V-GIG~~~A~~I~~~ 223 (226)
T 3c65_A 201 EATVEELQRA-NIPRAVAEKIYEK 223 (226)
T ss_dssp ------------------------
T ss_pred hCCHHHHHHc-CCCHHHHHHHHHH
Confidence 3467889999 9999999998754
No 91
>3v57_A Phycoerythrin alpha subunit; globin-like, photosynthesis; HET: PEB; 1.70A {Porphyridium purpureum} PDB: 3v58_A* 1eyx_A* 1b8d_A* 1lia_A* 2vjh_A* 3mwn_A*
Probab=23.19 E-value=38 Score=26.53 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 53 NPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 53 ~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
.+|++..||..|-. -+.+|.-|-..-+.+.+|-...|.++.+..|+..|+
T Consensus 16 gRyls~~eL~~l~~-~~~~~~~Rl~aa~~L~~na~~IV~~A~~~~~~~~P~ 65 (164)
T 3v57_A 16 GRFPSNSDLESIQG-NIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAY 65 (164)
T ss_dssp TCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCHHHHHHHHH-HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 57999999999844 356788888889999999999999999999987773
No 92
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=22.72 E-value=61 Score=25.54 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 53 NPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 53 ~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
.+|++..||..|-.. +.+|.-|=..-+.+.+|.+..|+++..+-|+..|+
T Consensus 16 gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~IV~~A~~~~~~~~P~ 65 (172)
T 3l0f_B 16 GEFLTNAQFDALSNL-VKEGNKRLDAVNRITSNASTIVANAARALFAEQPQ 65 (172)
T ss_dssp TCCCCHHHHHHHHHH-HHTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCHHHHHHHHHH-HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcC
Confidence 579999999998775 56777787778899999999999999999988774
No 93
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=22.66 E-value=65 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 52 PNPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
..+|++..||..|-.. +..|.-|-..-+.+.+|.+..|.++.++-|+..|+
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~L~~na~~Iv~~A~~~l~~~~P~ 65 (172)
T 2vml_B 15 RGSFLSEQELNQLTNL-VKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTD 65 (172)
T ss_dssp TTCCCCHHHHHHHHHH-HHTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGG
T ss_pred cCCCCCHHHHHHHHHH-HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcC
Confidence 3579999999998775 56788888888999999999999999999998875
No 94
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=22.04 E-value=38 Score=28.64 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.7
Q ss_pred cccCcchHHHHHHHhhh
Q 030389 113 VLKGVGPATASAVLAAY 129 (178)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (178)
-++||||-||.-++.-+
T Consensus 239 Gv~GiG~KtA~kLl~~~ 255 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTY 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 38999999999999864
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.85 E-value=30 Score=33.10 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.3
Q ss_pred HhhcccCcchHHHHHHHhh
Q 030389 110 ELTVLKGVGPATASAVLAA 128 (178)
Q Consensus 110 ~L~~LkGVGPATASaiLa~ 128 (178)
.++.||||||.+|.++-.+
T Consensus 116 ~~~~l~gvg~~~~~~l~~l 134 (780)
T 1gm5_A 116 DIQYAKGVGPNRKKKLKKL 134 (780)
T ss_dssp CSSSSSSCCHHHHHHHHTT
T ss_pred CchhcCCCCHHHHHHHHHC
Confidence 4567999999999887554
No 96
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.37 E-value=39 Score=28.84 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.7
Q ss_pred cccCcchHHHHHHHhhh
Q 030389 113 VLKGVGPATASAVLAAY 129 (178)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (178)
-++||||-||--++.-+
T Consensus 238 Gv~GIG~KtA~kLi~~~ 254 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY 254 (346)
T ss_dssp CSTTCCHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 37899999999999864
No 97
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.37 E-value=51 Score=31.35 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=23.7
Q ss_pred HHhhCccH-HHHHHHhhcccCcchHHHHHHHhhh
Q 030389 97 AFKSLPDL-TKAVSELTVLKGVGPATASAVLAAY 129 (178)
Q Consensus 97 Af~~l~d~-~~al~~L~~LkGVGPATASaiLa~~ 129 (178)
.|..+..+ .+..+.|.++.||||.+|..|....
T Consensus 531 ~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 531 YFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 34444333 3347889999999999999998764
No 98
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=21.07 E-value=39 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=22.0
Q ss_pred cccCcchHHHHHHHhhh----------CCCCCCccchhHHhh
Q 030389 113 VLKGVGPATASAVLAAY----------APDLAPFMSDEVCFC 144 (178)
Q Consensus 113 ~LkGVGPATASaiLa~~----------~P~~~pFfSDEa~~~ 144 (178)
-++||||-||.-+|.-+ +...+||=.+|+...
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~ 296 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKY 296 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHH
Confidence 46799999999999863 222356555666665
No 99
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=20.49 E-value=61 Score=25.13 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCchhHHHhhhCCHHHHHHHHHHHHhhCcc
Q 030389 52 PNPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPD 103 (178)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (178)
..+|++..||..|-.. +..|.-|-..-+.+.+|.+..|+++.++-|+..|+
T Consensus 13 ~gRyls~~eL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~l~~~~P~ 63 (160)
T 1kn1_A 13 EARYLSPGELDRIKSF-VLSGARRVRIAQTLTENRERIVKQAGDQLFQKRPD 63 (160)
T ss_dssp TTSCCCHHHHHHHHHH-HTTHHHHHHHHHHHHHTHHHHHHHHHHHHTTTSCT
T ss_pred cCCCCCHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3579999999998775 56688888888999999999999999999987774
Done!