RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030389
(178 letters)
>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome
bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 29.5 bits (66), Expect = 0.056
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 2 QLEFECSNVNKWKEALASYEACVESLNK 29
L N + K + YE C E +
Sbjct: 7 DLREHFKNTEEGKALVHHYEECAERVKI 34
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 28.3 bits (63), Expect = 0.21
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 99 KSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140
K L L + +L L+ +GP A ++ + PF E
Sbjct: 22 KILDLLNEGSARDLRSLQRIGPKKAQLIV-GWRELHGPFSQVE 63
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 27.9 bits (62), Expect = 0.38
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 101 LPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSD 139
+P + LT + G+G A A L + A + D
Sbjct: 8 IPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKD 46
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli
[TaxId: 562]}
Length = 114
Score = 27.1 bits (60), Expect = 0.54
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 101 LPDLTKAVSELTVLKGVGPATASAVLAAY 129
+PD AV LT + GVG + A+LAA
Sbjct: 8 IPDHKHAVIALTSIYGVGKTRSKAILAAA 36
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 25.8 bits (57), Expect = 0.59
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 109 SELTVLKGVGPATASAVLAAY 129
S L ++GVGP +L
Sbjct: 2 SSLETIEGVGPKRRQMLLKYM 22
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1
complex (Ubiquinol-cytochrome c reductase) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 66
Score = 25.5 bits (56), Expect = 1.1
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 2 QLEFECSNVNKWKEALASYEACVESLNK 29
+ +C + K +A E C E ++
Sbjct: 7 TVREQCEQLEKCVKARERLELCDERVSS 34
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 26.3 bits (57), Expect = 1.7
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 30 PNLISLDDYYRKELPSLIHQRNPNPHINTTELSKLVRWKLTRGKWRPRLLVFVSS 84
+ ++ ++P I+ NP+P + L + +S
Sbjct: 98 EAVATVMAIAEDKVPPTINLENPDPECD------LDYVPGQSRALIVD-VALSNS 145
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 26.3 bits (57), Expect = 1.9
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 109 SELTVLKGVGPATASA 124
+++ KGVGP
Sbjct: 10 TDIQYAKGVGPNRKKK 25
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 25.0 bits (55), Expect = 2.2
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 84 SLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140
SLD + D+ A + L + G+ A ++ A+ F + +
Sbjct: 13 SLDAVVEDCVNAVGV----DVNTASAALLARISGLNSTLAQNIV-AHRDANGAFRTRD 65
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 24.7 bits (54), Expect = 2.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 96 KAFKSLPDLTKAVSELTVLKGVGPATASAV 125
P K+ +E L GVG A +
Sbjct: 35 SVIAKYPHKIKSGAEAKKLPGVGTKIAEKI 64
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 24.2 bits (53), Expect = 2.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 103 DLTKAVSELTVLKGVGPATA 122
D + +++ LT + G+GP+ A
Sbjct: 1 DTSSSINFLTRVSGIGPSAA 20
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 24.3 bits (53), Expect = 3.0
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 103 DLTKA-VSELTVLKGVGPATASAVLA 127
L +A + EL L G+GP A ++
Sbjct: 10 SLNEASLEELMALPGIGPVLARRIVE 35
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 24.0 bits (52), Expect = 4.1
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 96 KAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEVC 142
+ + + L G+G TA + L F +
Sbjct: 2 PRLSDVREW--QLYILQSFPGIGRRTAER-ILERFGSLERFFTASKA 45
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 23.8 bits (51), Expect = 5.3
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 104 LTKAVSELTVLKGVGPATASAVLAAY 129
+++ LT +K V + +L +
Sbjct: 14 VSRVTECLTTVKSVNKTDSQTLLTTF 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,971
Number of extensions: 26476
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 15
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)