Query 030390
Match_columns 178
No_of_seqs 160 out of 565
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 99.9 9.1E-25 2E-29 163.4 4.7 88 60-175 1-88 (104)
2 PF04749 PLAC8: PLAC8 family; 99.8 7.5E-21 1.6E-25 139.8 4.3 88 62-175 1-92 (106)
3 PF05835 Synaphin: Synaphin pr 75.1 1.7 3.7E-05 34.4 1.5 15 153-167 64-78 (139)
4 PF06570 DUF1129: Protein of u 44.7 13 0.00029 30.4 1.6 18 149-166 189-206 (206)
5 KOG3657 Mitochondrial DNA poly 30.5 28 0.00061 35.3 1.5 16 152-167 251-266 (1075)
6 PF14714 KH_dom-like: KH-domai 26.4 45 0.00097 23.6 1.6 21 148-168 55-75 (80)
7 PF06679 DUF1180: Protein of u 23.3 39 0.00085 27.4 0.9 17 152-168 118-136 (163)
8 COG0786 GltS Na+/glutamate sym 14.0 2.9E+02 0.0063 25.7 4.4 25 146-170 172-196 (404)
9 PF04507 DUF576: Protein of un 12.7 1E+02 0.0022 26.9 1.0 13 154-166 198-210 (257)
10 cd01781 AF6_RA_repeat2 Ubiquit 11.8 1.5E+02 0.0032 22.2 1.5 16 159-174 37-52 (100)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.90 E-value=9.1e-25 Score=163.44 Aligned_cols=88 Identities=35% Similarity=0.750 Sum_probs=68.9
Q ss_pred CCCCcCcccccCCcccchhhcccchhhhhHHHhhhcCCCCCCCCccccchhcchhHHHHHhhhHhhccCCCcchhhhccc
Q 030390 60 EPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGL 139 (178)
Q Consensus 60 ~~WstGLcdC~~D~~~C~~~~fCPCv~fG~n~erl~~~~~~~~~C~~~~~~~~Gg~~~~~~~~~f~~v~~~~~~l~~~gl 139 (178)
++|++|||||++|+++|++++||||++||||++|++++. .+|. ..++.+++++.+ +
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~---~~C~------~~~~~~~~~~~~-~-------------- 56 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA---GECL------CGGLTAIAMSAL-C-------------- 56 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCC---Cchh------hHHHHHHHHHHH-H--------------
Confidence 589999999999999999999999999999999999642 4563 223322222111 0
Q ss_pred hhhhccccccchHHHHHHHHHhCCCCCCcccceeee
Q 030390 140 FFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLV 175 (178)
Q Consensus 140 ~f~w~~~~i~~~~~R~~iR~kYgI~Gs~c~Dcl~~~ 175 (178)
+++++|.+.+|++||+||||+||+++|++++.
T Consensus 57 ----~~~~~~~~~~R~~~R~ry~i~gs~~~D~~~~~ 88 (104)
T TIGR01571 57 ----GFCGCYTCFIRIKLREKYGIQGAPCDDCLTHL 88 (104)
T ss_pred ----hHHHHHHHHHHHHHHHHhCCCCCCcccchHHH
Confidence 13347889999999999999999999998764
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.82 E-value=7.5e-21 Score=139.85 Aligned_cols=88 Identities=25% Similarity=0.485 Sum_probs=64.9
Q ss_pred CCcCcccccCCcccchhhcccchhhhhHHHhhhcCCCCCCC----CccccchhcchhHHHHHhhhHhhccCCCcchhhhc
Q 030390 62 WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTH----PCICHAVCIEGGVALAAATAVFHGIDPRTSFLICE 137 (178)
Q Consensus 62 WstGLcdC~~D~~~C~~~~fCPCv~fG~n~erl~~~~~~~~----~C~~~~~~~~Gg~~~~~~~~~f~~v~~~~~~l~~~ 137 (178)
|++|||||++|+++|++++||||+++++|++|++.+..+.+ +|. + ... ++..
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~-------~---~~~---~~~~----------- 56 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCC-------L---CFC---CFGC----------- 56 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHH-------H---HHH---HHHH-----------
Confidence 99999999999999999999999999999999998643322 221 0 000 0000
Q ss_pred cchhhhccccccchHHHHHHHHHhCCCCCCcccceeee
Q 030390 138 GLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLV 175 (178)
Q Consensus 138 gl~f~w~~~~i~~~~~R~~iR~kYgI~Gs~c~Dcl~~~ 175 (178)
..+. ++.++|++..|++||+||||+|+.++||+++.
T Consensus 57 -~~~~-~l~~~~~~~~R~~iR~ry~I~g~~~~D~~~~~ 92 (106)
T PF04749_consen 57 -AACL-GLGWCYGCSLRQQIRERYGIQGSCCEDCCCSC 92 (106)
T ss_pred -HHHH-HHhHhhhhhHHHHHHHHhCCCCCChhhhHHHH
Confidence 0000 12335888999999999999999999998763
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=75.14 E-value=1.7 Score=34.40 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=9.5
Q ss_pred HHHHHHHHhCCCCCC
Q 030390 153 LRQNLQKKYHLKVIN 167 (178)
Q Consensus 153 ~R~~iR~kYgI~Gs~ 167 (178)
.|+.||.||||+-+.
T Consensus 64 mRq~IRdKY~l~k~e 78 (139)
T PF05835_consen 64 MRQHIRDKYGLKKKE 78 (139)
T ss_dssp HHHHHHHHHT-----
T ss_pred HHHHHHhhccccccc
Confidence 599999999998763
No 4
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=44.66 E-value=13 Score=30.40 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHhCCCCC
Q 030390 149 YTGNLRQNLQKKYHLKVI 166 (178)
Q Consensus 149 ~~~~~R~~iR~kYgI~Gs 166 (178)
.....|--+|+||||+|+
T Consensus 189 i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 189 IAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 345679999999999986
No 5
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]
Probab=30.46 E-value=28 Score=35.32 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCCCC
Q 030390 152 NLRQNLQKKYHLKVIN 167 (178)
Q Consensus 152 ~~R~~iR~kYgI~Gs~ 167 (178)
+-|.+|||.|+|+||-
T Consensus 251 fDRaRirEeY~i~~Sk 266 (1075)
T KOG3657|consen 251 FDRARIREEYNINGSK 266 (1075)
T ss_pred chHHHHHHHHhccccc
Confidence 4699999999999995
No 6
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=26.45 E-value=45 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.388 Sum_probs=14.2
Q ss_pred ccchHHHHHHHHHhCCCCCCc
Q 030390 148 IYTGNLRQNLQKKYHLKVINL 168 (178)
Q Consensus 148 i~~~~~R~~iR~kYgI~Gs~c 168 (178)
-|.=....+||+.||++|.+.
T Consensus 55 sY~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 55 SYKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHHHHHHHHHHHHH--TTS--
T ss_pred HHHHHHHHHHHHHCCCCceeE
Confidence 455667899999999999874
No 7
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.32 E-value=39 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=10.9
Q ss_pred HHHHHHH--HHhCCCCCCc
Q 030390 152 NLRQNLQ--KKYHLKVINL 168 (178)
Q Consensus 152 ~~R~~iR--~kYgI~Gs~c 168 (178)
..|.+.| +||||-++.-
T Consensus 118 R~r~~~rktRkYgvl~~~~ 136 (163)
T PF06679_consen 118 RLRRRNRKTRKYGVLTTRA 136 (163)
T ss_pred hhccccccceeecccCCCc
Confidence 3444344 6999988763
No 8
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=13.97 E-value=2.9e+02 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=19.7
Q ss_pred ccccchHHHHHHHHHhCCCCCCccc
Q 030390 146 CGIYTGNLRQNLQKKYHLKVINLLE 170 (178)
Q Consensus 146 ~~i~~~~~R~~iR~kYgI~Gs~c~D 170 (178)
+++..+..-+.++||++++..+-+|
T Consensus 172 GgliGgpva~~li~k~~l~~~~~~~ 196 (404)
T COG0786 172 GGLIGGPVARWLIKKNKLKPDPTKD 196 (404)
T ss_pred hHhcCcHHHHHHHHhcCCCCCCCCC
Confidence 4466677788999999999887654
No 9
>PF04507 DUF576: Protein of unknown function, DUF576; InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins. Members of this family are mostly predicted lipoproteins, found in Staphylococcus aureus but are also found clustered in Staphylococcus epidermidis.; PDB: 4EG9_A 4EGD_B.
Probab=12.74 E-value=1e+02 Score=26.88 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=7.1
Q ss_pred HHHHHHHhCCCCC
Q 030390 154 RQNLQKKYHLKVI 166 (178)
Q Consensus 154 R~~iR~kYgI~Gs 166 (178)
-.+||+||+|+-.
T Consensus 198 VkqLrkrY~Ipt~ 210 (257)
T PF04507_consen 198 VKQLRKRYNIPTN 210 (257)
T ss_dssp HHHHHHHS-----
T ss_pred HHHHHHhCCCCCC
Confidence 5799999999754
No 10
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=11.78 E-value=1.5e+02 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHhCCCCCCcccceee
Q 030390 159 KKYHLKVINLLEFITL 174 (178)
Q Consensus 159 ~kYgI~Gs~c~Dcl~~ 174 (178)
+|||++.+..+|++.+
T Consensus 37 eKygL~~e~p~~Y~Lv 52 (100)
T cd01781 37 EKYGLEKSDPDDYCLV 52 (100)
T ss_pred HHhCCCccCccceEEE
Done!