Query 030390
Match_columns 178
No_of_seqs 160 out of 565
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 83.7 0.49 1.7E-05 30.0 1.7 11 153-163 39-49 (49)
2 3rk3_E Complexin-1; snare prot 82.7 0.59 2E-05 31.0 1.8 13 153-165 42-54 (63)
3 1l4a_E Synaphin A; snare, snar 80.6 0.74 2.5E-05 31.8 1.8 13 153-165 46-58 (79)
4 1x62_A C-terminal LIM domain p 15.7 1.3E+02 0.0043 19.2 3.0 30 40-69 15-44 (79)
5 2kmz_A Tumor necrosis factor r 14.9 1.2E+02 0.0041 19.1 2.5 20 56-76 9-28 (53)
6 4egd_A Uncharacterized protein 14.5 63 0.0022 26.8 1.5 15 153-167 193-207 (260)
7 1as5_A Conotoxin Y-PIIIE; neur 11.5 43 0.0015 18.1 -0.3 7 83-89 3-9 (26)
8 2lo3_A SAGA-associated factor 11.3 1E+02 0.0035 18.9 1.3 20 32-52 10-29 (44)
9 4i4d_A Peptide synthetase NRPS 11.0 1.1E+02 0.0039 20.1 1.7 18 148-165 48-65 (93)
10 3k6g_A Telomeric repeat-bindin 10.8 1.1E+02 0.0036 22.3 1.5 12 152-163 75-86 (111)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=83.74 E-value=0.49 Score=30.02 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=10.2
Q ss_pred HHHHHHHHhCC
Q 030390 153 LRQNLQKKYHL 163 (178)
Q Consensus 153 ~R~~iR~kYgI 163 (178)
+|+.||.||||
T Consensus 39 mRq~IRdKY~i 49 (49)
T 1kil_E 39 MRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhcCC
Confidence 69999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=82.67 E-value=0.59 Score=31.01 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCC
Q 030390 153 LRQNLQKKYHLKV 165 (178)
Q Consensus 153 ~R~~iR~kYgI~G 165 (178)
+|+.||.||||+-
T Consensus 42 mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 42 VRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHhccch
Confidence 6999999999973
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=80.64 E-value=0.74 Score=31.82 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCC
Q 030390 153 LRQNLQKKYHLKV 165 (178)
Q Consensus 153 ~R~~iR~kYgI~G 165 (178)
+|+.||.||||+-
T Consensus 46 mRq~IRdKY~ikK 58 (79)
T 1l4a_E 46 MRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHhcccc
Confidence 6999999999974
No 4
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=15.66 E-value=1.3e+02 Score=19.23 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=20.7
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCcCcccc
Q 030390 40 VHRCNECGQPLPEDFEPPADEPWTTGIFGC 69 (178)
Q Consensus 40 ~~~~~~~~q~~p~~~~~~~~~~WstGLcdC 69 (178)
..+|..|+++.-..+-......|...-|-|
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C 44 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVC 44 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCee
Confidence 357999988876544444567888776666
No 5
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=14.94 E-value=1.2e+02 Score=19.15 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=14.3
Q ss_pred CCCCCCCCcCcccccCCcccc
Q 030390 56 PPADEPWTTGIFGCTEDTESC 76 (178)
Q Consensus 56 ~~~~~~WstGLcdC~~D~~~C 76 (178)
=+..+.||.+|=-| -|+.+|
T Consensus 9 C~~GsswS~DLdKC-mdcs~C 28 (53)
T 2kmz_A 9 CSRGSSWSADLDKC-MDCASC 28 (53)
T ss_dssp SCSSCBCCTTTTCC-BCSTTC
T ss_pred CCCCcccchhhhhh-hccccC
Confidence 35678999998777 455555
No 6
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=14.47 E-value=63 Score=26.79 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCCC
Q 030390 153 LRQNLQKKYHLKVIN 167 (178)
Q Consensus 153 ~R~~iR~kYgI~Gs~ 167 (178)
.-.+||+||+|+-.-
T Consensus 193 NVKQLRkrY~IpT~k 207 (260)
T 4egd_A 193 NVQQLRKRYDIPTKQ 207 (260)
T ss_dssp HHHHHHHHSCCCCCC
T ss_pred hHHHHHHhcCCCCCC
Confidence 457999999998653
No 7
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=11.52 E-value=43 Score=18.10 Aligned_cols=7 Identities=57% Similarity=1.782 Sum_probs=5.2
Q ss_pred chhhhhH
Q 030390 83 PCVLFGR 89 (178)
Q Consensus 83 PCv~fG~ 89 (178)
||++||+
T Consensus 3 pcclyg~ 9 (26)
T 1as5_A 3 PCCLYGK 9 (26)
T ss_dssp CSSSTTC
T ss_pred Cceeccc
Confidence 6778776
No 8
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=11.35 E-value=1e+02 Score=18.88 Aligned_cols=20 Identities=30% Similarity=0.926 Sum_probs=14.3
Q ss_pred CCccCccccccccCCCCCCCC
Q 030390 32 PIEVPQLNVHRCNECGQPLPE 52 (178)
Q Consensus 32 p~~~p~~~~~~~~~~~q~~p~ 52 (178)
|++ ++..-+.|+-||+|.-.
T Consensus 10 ple-~~~~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 10 PLD-KPIQYRVCEKCGKPLAL 29 (44)
T ss_dssp CCC-CCCCEEECTTTCCEEET
T ss_pred ccC-ccccchhhcccCCcchH
Confidence 454 45667889999998653
No 9
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=10.97 E-value=1.1e+02 Score=20.10 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=14.2
Q ss_pred ccchHHHHHHHHHhCCCC
Q 030390 148 IYTGNLRQNLQKKYHLKV 165 (178)
Q Consensus 148 i~~~~~R~~iR~kYgI~G 165 (178)
+..+....+||++||++=
T Consensus 48 L~a~~l~~~l~~~~g~~l 65 (93)
T 4i4d_A 48 IHAIXITNRVEELVDAEL 65 (93)
T ss_dssp HHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 455678899999999864
No 10
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=10.81 E-value=1.1e+02 Score=22.34 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCC
Q 030390 152 NLRQNLQKKYHL 163 (178)
Q Consensus 152 ~~R~~iR~kYgI 163 (178)
..|.++|+|||=
T Consensus 75 ~~R~qL~~KfG~ 86 (111)
T 3k6g_A 75 DTREALVKKFGA 86 (111)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHHHHHHHHhh
Confidence 369999999983
Done!