Query 030390
Match_columns 178
No_of_seqs 160 out of 565
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 21:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030390.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030390hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkya3 d.52.5.1 (A:359-439) P 13.6 49 0.0035 20.8 2.2 21 148-168 52-73 (81)
2 d2pnga1 a.28.1.1 (A:1-76) Type 11.8 55 0.004 19.8 2.0 20 147-166 38-57 (76)
3 d2g3ra2 b.34.9.1 (A:1538-1603) 11.6 36 0.0026 20.7 0.9 19 145-163 47-65 (66)
4 d2csba2 a.60.2.4 (A:294-350) T 9.9 56 0.004 19.0 1.3 11 156-166 7-17 (57)
5 d1nexa1 a.157.1.1 (A:116-185) 9.5 68 0.0049 19.5 1.8 16 151-166 45-60 (70)
6 d2jq4a1 a.28.1.1 (A:1-83) Hypo 8.9 84 0.0061 18.9 2.1 19 148-166 36-54 (83)
7 d2odgc1 a.140.1.1 (C:2-47) Inn 7.8 1E+02 0.0074 17.6 1.9 15 156-170 13-27 (46)
8 d2rh2a1 b.34.4.1 (A:21-78) R67 7.7 35 0.0026 20.1 -0.3 20 11-30 28-47 (58)
9 d1k6ya1 a.4.10.1 (A:1-46) N-te 7.5 86 0.0063 17.8 1.5 12 155-166 20-31 (46)
10 d1ubdc2 g.37.1.1 (C:323-350) Y 7.0 45 0.0032 17.1 -0.0 14 40-53 2-15 (28)
No 1
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.56 E-value=49 Score=20.78 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHH-hCCCCCCc
Q 030390 148 IYTGNLRQNLQKK-YHLKVINL 168 (178)
Q Consensus 148 i~~~~~R~~iR~k-YgI~Gs~c 168 (178)
-|--....++|+. ||++|.+.
T Consensus 52 sY~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 52 PQKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHHhCCCCccCE
Confidence 3555678899997 99999875
No 2
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.80 E-value=55 Score=19.76 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.0
Q ss_pred cccchHHHHHHHHHhCCCCC
Q 030390 147 GIYTGNLRQNLQKKYHLKVI 166 (178)
Q Consensus 147 ~i~~~~~R~~iR~kYgI~Gs 166 (178)
-+..+..+.+|+++||++=+
T Consensus 38 Sl~a~el~~~i~~~~g~~l~ 57 (76)
T d2pnga1 38 SLMGVEVRQILEREHDLVLP 57 (76)
T ss_dssp SHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 35566789999999999754
No 3
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.57 E-value=36 Score=20.73 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.6
Q ss_pred cccccchHHHHHHHHHhCC
Q 030390 145 MCGIYTGNLRQNLQKKYHL 163 (178)
Q Consensus 145 ~~~i~~~~~R~~iR~kYgI 163 (178)
++-|.++-+-.++|++||+
T Consensus 47 ~avilsleqgnrlreqygl 65 (66)
T d2g3ra2 47 MAVILSLEQGNRLREQYGL 65 (66)
T ss_dssp GGEEBCHHHHHTTHHHHBC
T ss_pred hheeEEhhhhhhHHHhhCC
Confidence 4447788899999999997
No 4
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=9.87 E-value=56 Score=19.01 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=9.2
Q ss_pred HHHHHhCCCCC
Q 030390 156 NLQKKYHLKVI 166 (178)
Q Consensus 156 ~iR~kYgI~Gs 166 (178)
+++.||||+..
T Consensus 7 klqdrygired 17 (57)
T d2csba2 7 KLQDRYGIRED 17 (57)
T ss_dssp HHHHHHCCCHH
T ss_pred ehhhhhccHHH
Confidence 78999999864
No 5
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.53 E-value=68 Score=19.52 Aligned_cols=16 Identities=6% Similarity=0.314 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhCCCCC
Q 030390 151 GNLRQNLQKKYHLKVI 166 (178)
Q Consensus 151 ~~~R~~iR~kYgI~Gs 166 (178)
+..-.+||+.|||+..
T Consensus 45 gkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 45 GRSPEEIRRTFNIVND 60 (70)
T ss_dssp TCCHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHhCCCCC
Confidence 4457799999999975
No 6
>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.86 E-value=84 Score=18.91 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=14.5
Q ss_pred ccchHHHHHHHHHhCCCCC
Q 030390 148 IYTGNLRQNLQKKYHLKVI 166 (178)
Q Consensus 148 i~~~~~R~~iR~kYgI~Gs 166 (178)
+-.......|+++|||+=+
T Consensus 36 l~~~~l~~~le~~f~v~i~ 54 (83)
T d2jq4a1 36 FASVQLMLGIEEAFDIEFP 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 4445678899999998753
No 7
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.75 E-value=1e+02 Score=17.56 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=11.2
Q ss_pred HHHHHhCCCCCCccc
Q 030390 156 NLQKKYHLKVINLLE 170 (178)
Q Consensus 156 ~iR~kYgI~Gs~c~D 170 (178)
++=++|||+-.|.-|
T Consensus 13 ~lL~~y~I~HGPvVd 27 (46)
T d2odgc1 13 TLLRRYNIPHGPVVG 27 (46)
T ss_dssp HHHHHTTCCCCCCCH
T ss_pred HHHHHhCCCCCCccc
Confidence 455689999888654
No 8
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=7.65 E-value=35 Score=20.07 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=14.7
Q ss_pred ccCCCCCCCccccCCCCCCC
Q 030390 11 VKLTKEQTPVEDDIKPGELN 30 (178)
Q Consensus 11 ~~~~~~~~~~~~~~~p~~~~ 30 (178)
-+||+|.--+|.+.|||.+|
T Consensus 28 t~ltpegyaveseshp~svq 47 (58)
T d2rh2a1 28 TNLTPEGYAVESEAHPGSVQ 47 (58)
T ss_dssp CSSCSSEEEEEESSSTTCEE
T ss_pred ccccccceEEecccCCCcEE
Confidence 36888875556679999876
No 9
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.48 E-value=86 Score=17.76 Aligned_cols=12 Identities=8% Similarity=0.429 Sum_probs=9.5
Q ss_pred HHHHHHhCCCCC
Q 030390 155 QNLQKKYHLKVI 166 (178)
Q Consensus 155 ~~iR~kYgI~Gs 166 (178)
..||++|||+-.
T Consensus 20 ~~L~~~F~ip~~ 31 (46)
T d1k6ya1 20 RAMASDFNLPPV 31 (46)
T ss_dssp HHHHHHHTCCHH
T ss_pred HHHHHHcCCCHH
Confidence 478999999753
No 10
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.03 E-value=45 Score=17.09 Aligned_cols=14 Identities=50% Similarity=1.104 Sum_probs=9.5
Q ss_pred cccccCCCCCCCCC
Q 030390 40 VHRCNECGQPLPED 53 (178)
Q Consensus 40 ~~~~~~~~q~~p~~ 53 (178)
.+.|+|||...-++
T Consensus 2 ~hvc~ecgkaf~es 15 (28)
T d1ubdc2 2 VHVCAECGKAFVES 15 (28)
T ss_dssp CEECTTTCCEESSH
T ss_pred cchHHHHhHHHHHH
Confidence 46788888765543
Done!