Your job contains 1 sequence.
>030391
MGFVGVLLTPRHPPLTCRFLWDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIA
IHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQ
HRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030391
(178 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2203010 - symbol:emb1473 "embryo defective 147... 722 2.3e-71 1
UNIPROTKB|P0AA10 - symbol:rplM species:83333 "Escherichia... 396 8.0e-37 1
UNIPROTKB|P66065 - symbol:rplM "50S ribosomal protein L13... 385 1.2e-35 1
TIGR_CMR|CPS_4443 - symbol:CPS_4443 "ribosomal protein L1... 381 3.1e-35 1
UNIPROTKB|Q9KUF1 - symbol:rplM "50S ribosomal protein L13... 379 5.1e-35 1
TIGR_CMR|VC_0570 - symbol:VC_0570 "ribosomal protein L13"... 379 5.1e-35 1
TIGR_CMR|SO_3940 - symbol:SO_3940 "ribosomal protein L13"... 374 1.7e-34 1
TIGR_CMR|GSU_2876 - symbol:GSU_2876 "ribosomal protein L1... 357 1.1e-32 1
TIGR_CMR|BA_0143 - symbol:BA_0143 "ribosomal protein L13"... 356 1.4e-32 1
TIGR_CMR|SPO_1691 - symbol:SPO_1691 "ribosomal protein L1... 340 6.9e-31 1
TIGR_CMR|CHY_2274 - symbol:CHY_2274 "ribosomal protein L1... 326 2.1e-29 1
TIGR_CMR|DET_0505 - symbol:DET_0505 "ribosomal protein L1... 317 1.9e-28 1
TIGR_CMR|ECH_1019 - symbol:ECH_1019 "ribosomal protein L1... 304 4.5e-27 1
TIGR_CMR|NSE_0840 - symbol:NSE_0840 "ribosomal protein L1... 300 1.2e-26 1
TIGR_CMR|APH_1108 - symbol:APH_1108 "ribosomal protein L1... 299 1.5e-26 1
TIGR_CMR|CJE_1653 - symbol:CJE_1653 "ribosomal protein L1... 294 5.2e-26 1
DICTYBASE|DDB_G0274959 - symbol:mrpl13 "ribosomal protein... 270 1.8e-23 1
SGD|S000005676 - symbol:MRPL23 "Mitochondrial ribosomal p... 248 3.9e-21 1
ASPGD|ASPL0000005099 - symbol:AN9469 species:162425 "Emer... 246 6.3e-21 1
POMBASE|SPBC16G5.04 - symbol:mrpl23 "mitochondrial riboso... 220 3.6e-18 1
TAIR|locus:2082304 - symbol:AT3G01790 species:3702 "Arabi... 220 3.6e-18 1
CGD|CAL0004144 - symbol:orf19.3348 species:5476 "Candida ... 218 5.8e-18 1
ZFIN|ZDB-GENE-050522-167 - symbol:mrpl13 "mitochondrial r... 216 9.5e-18 1
UNIPROTKB|E2RT81 - symbol:MRPL13 "Uncharacterized protein... 209 5.3e-17 1
UNIPROTKB|J9P023 - symbol:MRPL13 "Uncharacterized protein... 209 5.3e-17 1
UNIPROTKB|Q3SYS1 - symbol:MRPL13 "39S ribosomal protein L... 206 1.1e-16 1
MGI|MGI:2137218 - symbol:Mrpl13 "mitochondrial ribosomal ... 203 2.3e-16 1
UNIPROTKB|Q9BYD1 - symbol:MRPL13 "39S ribosomal protein L... 202 2.9e-16 1
UNIPROTKB|F1S286 - symbol:MRPL13 "Uncharacterized protein... 200 4.7e-16 1
RGD|1359587 - symbol:Mrpl13 "mitochondrial ribosomal prot... 195 1.6e-15 1
UNIPROTKB|E5RJI7 - symbol:MRPL13 "39S ribosomal protein L... 184 2.3e-14 1
UNIPROTKB|K7GP19 - symbol:MRPL13 "Uncharacterized protein... 181 4.9e-14 1
GENEDB_PFALCIPARUM|PFB0645c - symbol:PFB0645c "Ribosomal ... 164 3.1e-12 1
UNIPROTKB|O96222 - symbol:PFB0645c "Mitochondrial large r... 164 3.1e-12 1
FB|FBgn0032720 - symbol:mRpL13 "mitochondrial ribosomal p... 154 3.5e-11 1
SGD|S000005013 - symbol:RPL16B "Ribosomal 60S subunit pro... 128 5.8e-08 1
POMBASE|SPAC23A1.11 - symbol:rpl1602 "60S ribosomal prote... 119 3.0e-06 1
POMBASE|SPBC839.13c - symbol:rpl1601 "60S ribosomal prote... 119 3.0e-06 1
UNIPROTKB|G4MLS0 - symbol:MGG_05449 "60S ribosomal protei... 119 3.5e-06 1
TAIR|locus:2098530 - symbol:AT3G07110 species:3702 "Arabi... 119 3.9e-06 1
TAIR|locus:2156569 - symbol:AT5G48760 species:3702 "Arabi... 118 5.7e-06 1
UNIPROTKB|Q95307 - symbol:RPL13A "60S ribosomal protein L... 103 1.0e-05 1
TAIR|locus:2087268 - symbol:AT3G24830 species:3702 "Arabi... 115 1.6e-05 1
ASPGD|ASPL0000014757 - symbol:rpl16a species:162425 "Emer... 114 2.0e-05 1
GENEDB_PFALCIPARUM|PF10_0043 - symbol:PF10_0043 "ribosoma... 114 2.0e-05 1
UNIPROTKB|Q8IJZ7 - symbol:PF10_0043 "60S ribosomal protei... 114 2.0e-05 1
CGD|CAL0005216 - symbol:RPL16A species:5476 "Candida albi... 113 2.6e-05 1
UNIPROTKB|Q5AB87 - symbol:RPL16A "Likely cytosolic riboso... 113 2.6e-05 1
WB|WBGene00004428 - symbol:rpl-16 species:6239 "Caenorhab... 112 3.9e-05 1
SGD|S000001395 - symbol:RPL16A "Ribosomal 60S subunit pro... 110 6.7e-05 1
TAIR|locus:2119335 - symbol:AT4G13170 species:3702 "Arabi... 110 7.7e-05 1
POMBASE|SPBC2G2.05 - symbol:rpl1603 "60S ribosomal protei... 107 0.00017 1
UNIPROTKB|F1LYZ7 - symbol:F1LYZ7 "Uncharacterized protein... 104 0.00024 1
FB|FBgn0037351 - symbol:RpL13A "Ribosomal protein L13A" s... 104 0.00050 1
UNIPROTKB|Q3SZ90 - symbol:RPL13A "60S ribosomal protein L... 103 0.00064 1
UNIPROTKB|F1PI16 - symbol:RPL13A "60S ribosomal protein L... 103 0.00064 1
UNIPROTKB|Q9XSU0 - symbol:RPL13A "60S ribosomal protein L... 103 0.00064 1
UNIPROTKB|P40429 - symbol:RPL13A "60S ribosomal protein L... 103 0.00064 1
UNIPROTKB|Q4R8Z2 - symbol:RPL13A "60S ribosomal protein L... 103 0.00064 1
UNIPROTKB|Q5RA38 - symbol:RPL13A "60S ribosomal protein L... 103 0.00064 1
UNIPROTKB|F1RI01 - symbol:RPL13A "60S ribosomal protein L... 103 0.00065 1
>TAIR|locus:2203010 [details] [associations]
symbol:emb1473 "embryo defective 1473" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0009579 EMBL:AC007260
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 EMBL:X87333 EMBL:AY063105 EMBL:AF370318
IPI:IPI00520181 PIR:A96815 RefSeq:NP_177984.1 UniGene:At.20962
HSSP:O59300 ProteinModelPortal:Q9SYL9 SMR:Q9SYL9 STRING:Q9SYL9
PaxDb:Q9SYL9 PRIDE:Q9SYL9 ProMEX:Q9SYL9 EnsemblPlants:AT1G78630.1
GeneID:844199 KEGG:ath:AT1G78630 GeneFarm:82 TAIR:At1g78630
HOGENOM:HOG000225286 InParanoid:Q9SYL9 KO:K02871 OMA:HVNTDKP
PhylomeDB:Q9SYL9 ProtClustDB:CLSN2679548 Genevestigator:Q9SYL9
GermOnline:AT1G78630 TIGRFAMs:TIGR01066 Uniprot:Q9SYL9
Length = 241
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 133/157 (84%), Positives = 146/157 (92%)
Query: 22 DIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYV 81
DIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+V
Sbjct: 85 DIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFV 144
Query: 82 IVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 141
IVVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPKGRL
Sbjct: 145 IVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRL 204
Query: 142 GRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 178
GR LF HLKVYKGP+HPHEAQ+P++LPIRDKRIQ Q+
Sbjct: 205 GRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241
>UNIPROTKB|P0AA10 [details] [associations]
symbol:rplM species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 PDB:2RDO PDBsum:2RDO eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066 PDB:3J0T PDB:3J0W
PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ
PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B EMBL:X02130
PIR:A02787 RefSeq:NP_417698.1 RefSeq:YP_491415.1 PDB:3BBX
PDBsum:3BBX ProteinModelPortal:P0AA10 SMR:P0AA10 DIP:DIP-47837N
IntAct:P0AA10 MINT:MINT-1269598 PaxDb:P0AA10 PRIDE:P0AA10
EnsemblBacteria:EBESCT00000001772 EnsemblBacteria:EBESCT00000018148
GeneID:12932920 GeneID:947828 KEGG:ecj:Y75_p3151 KEGG:eco:b3231
PATRIC:32121888 EchoBASE:EB0867 EcoGene:EG10874
BioCyc:EcoCyc:EG10874-MONOMER BioCyc:ECOL316407:JW3200-MONOMER
EvolutionaryTrace:P0AA10 Genevestigator:P0AA10 Uniprot:P0AA10
Length = 142
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 77/130 (59%), Positives = 96/130 (73%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDK 72
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LKVY G H H
Sbjct: 73 VYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNH 132
Query: 160 EAQQPIELPI 169
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>UNIPROTKB|P66065 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005829
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:A70977 RefSeq:NP_217960.1
RefSeq:NP_338075.1 RefSeq:YP_006516932.1 ProteinModelPortal:P66065
SMR:P66065 PhosSite:P12061578 PRIDE:P66065
EnsemblBacteria:EBMYCT00000002385 EnsemblBacteria:EBMYCT00000071846
GeneID:13317050 GeneID:887584 GeneID:926638 KEGG:mtc:MT3548
KEGG:mtu:Rv3443c KEGG:mtv:RVBD_3443c PATRIC:18129537
TubercuList:Rv3443c OMA:FEITQVA ChEMBL:CHEMBL1933 Uniprot:P66065
Length = 147
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 72/144 (50%), Positives = 100/144 (69%)
Query: 27 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 86
T+ PKA D + ++WYV+DATD +LGRLA A +RGK+ T+ P+VD G +VIV+NA
Sbjct: 3 TYAPKAGD---TTRSWYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINA 59
Query: 87 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 146
+KVA+SG K K+ RHSG PGG+ + T +L R P+R++E A+ GMLPK RL R++
Sbjct: 60 DKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQ 119
Query: 147 THLKVYKGPNHPHEAQQPIELPIR 170
L+VY GP HPH AQQP+ ++
Sbjct: 120 RKLRVYAGPEHPHSAQQPVPYELK 143
>TIGR_CMR|CPS_4443 [details] [associations]
symbol:CPS_4443 "ribosomal protein L13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_271091.1 HSSP:P0AA10 ProteinModelPortal:Q47VT1 SMR:Q47VT1
STRING:Q47VT1 GeneID:3518471 KEGG:cps:CPS_4443 PATRIC:21471723
BioCyc:CPSY167879:GI48-4452-MONOMER Uniprot:Q47VT1
Length = 142
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 70/125 (56%), Positives = 92/125 (73%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ W++VDA DK LGR+A+ IA +RGK+ A YTP VD G Y++V+NAEKV V+G K K
Sbjct: 13 REWFLVDAEDKTLGRIATEIATRLRGKHKAEYTPHVDTGDYIVVINAEKVRVTGNKAKGK 72
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
IY H+ PGG+K+ +F++L + P R++E AV+GMLPKG LGRE+F LKVY GP H H
Sbjct: 73 IYYSHTEFPGGLKQISFEKLIEKAPTRVLEFAVKGMLPKGPLGREMFRKLKVYAGPEHAH 132
Query: 160 EAQQP 164
AQQP
Sbjct: 133 TAQQP 137
>UNIPROTKB|Q9KUF1 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 76/130 (58%), Positives = 91/130 (70%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVVNAEKV V+G K K
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVVNAEKVTVTGNKAKNK 72
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y RHS PGG+K +F++L R PE ++E AV+GMLPKG LGR ++ LKVY G H H
Sbjct: 73 MYHRHSEFPGGLKSFSFEKLIERKPEMVLELAVKGMLPKGPLGRAMYRKLKVYAGAEHNH 132
Query: 160 EAQQPIELPI 169
AQQP L I
Sbjct: 133 AAQQPKVLDI 142
>TIGR_CMR|VC_0570 [details] [associations]
symbol:VC_0570 "ribosomal protein L13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 76/130 (58%), Positives = 91/130 (70%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVVNAEKV V+G K K
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVVNAEKVTVTGNKAKNK 72
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y RHS PGG+K +F++L R PE ++E AV+GMLPKG LGR ++ LKVY G H H
Sbjct: 73 MYHRHSEFPGGLKSFSFEKLIERKPEMVLELAVKGMLPKGPLGRAMYRKLKVYAGAEHNH 132
Query: 160 EAQQPIELPI 169
AQQP L I
Sbjct: 133 AAQQPKVLDI 142
>TIGR_CMR|SO_3940 [details] [associations]
symbol:SO_3940 "ribosomal protein L13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10
RefSeq:NP_719471.1 ProteinModelPortal:Q8EAG2 SMR:Q8EAG2
GeneID:1171578 KEGG:son:SO_3940 PATRIC:23527558 Uniprot:Q8EAG2
Length = 142
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 74/130 (56%), Positives = 91/130 (70%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ W+VVDA K LGR+A+ IA+ +RGK+ YTP VD G Y+IV+NAEKV V+G K K
Sbjct: 13 RDWFVVDADGKTLGRIATEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVTVTGNKAQGK 72
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
Y HSG PGG+K+ +F++LQ PE IIE AV+GMLPKG LGR +F LKVY G H H
Sbjct: 73 TYYSHSGFPGGIKQISFEKLQAHKPEMIIEKAVKGMLPKGPLGRAMFRKLKVYAGAEHNH 132
Query: 160 EAQQPIELPI 169
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>TIGR_CMR|GSU_2876 [details] [associations]
symbol:GSU_2876 "ribosomal protein L13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:NP_953918.1 ProteinModelPortal:Q748X4 SMR:Q748X4
GeneID:2688685 KEGG:gsu:GSU2876 PATRIC:22028613
HOGENOM:HOG000225288 BioCyc:GSUL243231:GH27-2865-MONOMER
Uniprot:Q748X4
Length = 143
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 70/139 (50%), Positives = 91/139 (65%)
Query: 31 KAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVA 90
K A + WY+VDA +K+LGR+A+ IA +RGK YTPSVD G +V+VVNA K+
Sbjct: 5 KVAKKEEVTRDWYLVDADNKVLGRMATEIANILRGKKKPIYTPSVDTGDFVVVVNAAKLQ 64
Query: 91 VSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 150
++G K K+Y H+G PGG+K T +L + PE +I AV+GMLPK +L R + LK
Sbjct: 65 LTGNKLADKMYYHHTGFPGGIKSITAGKLIEKKPEDLIRKAVKGMLPKNKLARHMLKKLK 124
Query: 151 VYKGPNHPHEAQQPIELPI 169
VY GP HPHEAQQP L I
Sbjct: 125 VYAGPEHPHEAQQPKTLDI 143
>TIGR_CMR|BA_0143 [details] [associations]
symbol:BA_0143 "ribosomal protein L13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286
KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:NP_842710.1 RefSeq:YP_016748.1 RefSeq:YP_026429.1
ProteinModelPortal:Q81VP9 SMR:Q81VP9 DNASU:1086446
EnsemblBacteria:EBBACT00000011142 EnsemblBacteria:EBBACT00000017416
EnsemblBacteria:EBBACT00000024437 GeneID:1086446 GeneID:2819438
GeneID:2851608 KEGG:ban:BA_0143 KEGG:bar:GBAA_0143 KEGG:bat:BAS0143
OMA:MLPKTRL BioCyc:BANT260799:GJAJ-154-MONOMER
BioCyc:BANT261594:GJ7F-156-MONOMER Uniprot:Q81VP9
Length = 145
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 64/126 (50%), Positives = 91/126 (72%)
Query: 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
++ WYVVDA + LGRLAS +A +RGKN T+TP VD G +VI++NAEK+ ++G K
Sbjct: 13 ERKWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLND 72
Query: 99 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
KIY RH+ PGG+K+ T +++ P +++E A++GMLPKGRLGR++ L VY G HP
Sbjct: 73 KIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHP 132
Query: 159 HEAQQP 164
H+AQ+P
Sbjct: 133 HQAQKP 138
>TIGR_CMR|SPO_1691 [details] [associations]
symbol:SPO_1691 "ribosomal protein L13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_166930.1 ProteinModelPortal:Q5LSS5
SMR:Q5LSS5 GeneID:3193556 KEGG:sil:SPO1691 PATRIC:23376707
Uniprot:Q5LSS5
Length = 152
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 66/141 (46%), Positives = 94/141 (66%)
Query: 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
DK W ++DA +LGRLAS +A+ +RGK+ A++TP +DMG VIV+NA+KV ++GKKR +
Sbjct: 12 DKKWILIDAEGVVLGRLASIVAMRLRGKHKASFTPHMDMGDNVIVINADKVQITGKKREE 71
Query: 99 KIYRRHSGRPGGMKEETFDQ-LQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNH 157
Y H+G PGG+K T Q L+ PER++ AV+ MLP RL R+ T+L++Y G H
Sbjct: 72 HFYW-HTGHPGGIKSRTKQQILEGAHPERVVYQAVKRMLPGNRLSRQQMTNLRIYAGTEH 130
Query: 158 PHEAQQPIELPIRDKRIQKQR 178
PHEAQ P L ++ + R
Sbjct: 131 PHEAQAPEVLDVKSMNKKNTR 151
>TIGR_CMR|CHY_2274 [details] [associations]
symbol:CHY_2274 "ribosomal protein L13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_361083.1 ProteinModelPortal:Q3A9V1 SMR:Q3A9V1
STRING:Q3A9V1 GeneID:3726760 KEGG:chy:CHY_2274 PATRIC:21277619
BioCyc:CHYD246194:GJCN-2273-MONOMER Uniprot:Q3A9V1
Length = 143
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 63/126 (50%), Positives = 85/126 (67%)
Query: 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
++ WYV+DA K LGR+AS A +RGK+ +TP VD G +VI++NAEK ++GKK +
Sbjct: 13 ERKWYVIDAAGKPLGRVASEAAKLLRGKHKPEFTPHVDTGDFVIIINAEKAVLTGKKLEK 72
Query: 99 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
K++ RHS PGG+K + L P E AV+GMLP RLGR+LF LKVY G +HP
Sbjct: 73 KMFYRHSRYPGGLKAIPYGILMKTNPVLAFEKAVKGMLPHNRLGRKLFKKLKVYAGESHP 132
Query: 159 HEAQQP 164
H+AQ+P
Sbjct: 133 HQAQKP 138
>TIGR_CMR|DET_0505 [details] [associations]
symbol:DET_0505 "ribosomal protein L13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_181249.1 ProteinModelPortal:Q3Z950
STRING:Q3Z950 GeneID:3230210 KEGG:det:DET0505 PATRIC:21608079
BioCyc:DETH243164:GJNF-505-MONOMER Uniprot:Q3Z950
Length = 143
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 59/137 (43%), Positives = 91/137 (66%)
Query: 26 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 85
NT+ KA+D + + W+V+DA+ ++LG +A+ A ++ GK+ + ++D G YV+++N
Sbjct: 2 NTYTVKASDIK---RDWHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVIIN 58
Query: 86 AEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGREL 145
A+KV V+G K QKIY RHSG PGG ++E L P +IEHAV+GM+P+ LG ++
Sbjct: 59 AKKVTVTGNKLDQKIYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGAQI 118
Query: 146 FTHLKVYKGPNHPHEAQ 162
LKVY+G HPH +Q
Sbjct: 119 LAKLKVYEGEEHPHASQ 135
>TIGR_CMR|ECH_1019 [details] [associations]
symbol:ECH_1019 "ribosomal protein L13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_507805.1 ProteinModelPortal:Q2GFH8 STRING:Q2GFH8
GeneID:3927274 KEGG:ech:ECH_1019 PATRIC:20577408
BioCyc:ECHA205920:GJNR-1022-MONOMER Uniprot:Q2GFH8
Length = 156
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 62/129 (48%), Positives = 82/129 (63%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
K W V+DA ++GRLA+ +A +RGK+ YTP +D G VI++NAEKV +G K K
Sbjct: 15 KRWVVIDADGVVVGRLAAFVANILRGKDKPEYTPHMDCGDNVIIINAEKVHFTGSKLKNK 74
Query: 100 IYRRHSGRPGGMKEET-FDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
+Y RH+G PGG+K T D ++ PERII AVR ML G + R +L VY GP H
Sbjct: 75 VYYRHTGYPGGLKSCTPADLFLNKHPERIINMAVRRMLSTGPMARRRLKNLYVYSGPEHK 134
Query: 159 HEAQQPIEL 167
H AQQP++L
Sbjct: 135 HNAQQPVKL 143
>TIGR_CMR|NSE_0840 [details] [associations]
symbol:NSE_0840 "ribosomal protein L13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_506708.1 ProteinModelPortal:Q2GCT8 STRING:Q2GCT8
GeneID:3932168 KEGG:nse:NSE_0840 PATRIC:22681675
BioCyc:NSEN222891:GHFU-845-MONOMER Uniprot:Q2GCT8
Length = 152
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/127 (48%), Positives = 83/127 (65%)
Query: 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
+K W VVDATD ++GRLA+ ++ +RGK TYTP +D G VIVVNA KV SG K +
Sbjct: 12 EKQWIVVDATDAVVGRLAAFVSTILRGKTKPTYTPHMDCGDNVIVVNASKVKFSGSKMSD 71
Query: 99 KIYRRHSGRPGGMKEETFDQ-LQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNH 157
K+Y RH+G PGG+K T + L+ + P +++ AV+ ML G + R +L VY GP H
Sbjct: 72 KVYYRHTGYPGGIKSTTPAKILRGKKPCEVVKLAVKRMLDDGPMARRRLKNLYVYAGPEH 131
Query: 158 PHEAQQP 164
HEAQ+P
Sbjct: 132 RHEAQKP 138
>TIGR_CMR|APH_1108 [details] [associations]
symbol:APH_1108 "ribosomal protein L13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
RefSeq:YP_505656.1 ProteinModelPortal:Q2GIZ5 SMR:Q2GIZ5
STRING:Q2GIZ5 GeneID:3930273 KEGG:aph:APH_1108 PATRIC:20950974
OMA:YTPHMDC ProtClustDB:PRK09216
BioCyc:APHA212042:GHPM-1114-MONOMER HAMAP:MF_01366_B Uniprot:Q2GIZ5
Length = 158
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 63/130 (48%), Positives = 82/130 (63%)
Query: 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
DK W ++DA+D ++GRLA+ IA +RGK+ YTP +D G V+VVNA V + K
Sbjct: 12 DKRWVLIDASDMVVGRLAAYIATILRGKHKPEYTPHMDCGDNVVVVNASSVKFTRNKMRD 71
Query: 99 KIYRRHSGRPGGMKEET-FDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNH 157
K+Y RH+G PGG+K T D L+ ERII+ AV ML G L R F +LKVY GP H
Sbjct: 72 KVYYRHTGYPGGLKSCTPNDMLRAGYAERIIKVAVWRMLGDGPLARRRFKNLKVYSGPEH 131
Query: 158 PHEAQQPIEL 167
H AQ+P+ L
Sbjct: 132 GHHAQKPVAL 141
>TIGR_CMR|CJE_1653 [details] [associations]
symbol:CJE_1653 "ribosomal protein L13" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:E81294
RefSeq:YP_179634.1 ProteinModelPortal:Q5HSV1 STRING:Q5HSV1
GeneID:3232281 KEGG:cjr:CJE1653 PATRIC:20045101
BioCyc:CJEJ195099:GJC0-1683-MONOMER Uniprot:Q5HSV1
Length = 141
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 57/124 (45%), Positives = 77/124 (62%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ- 98
+ W V+DA K GRL + +A +RGKN +TP+VD G YVI++NA K +G + +
Sbjct: 12 REWIVLDAEGKRFGRLLTEVATILRGKNKPCFTPNVDCGDYVIIINASKAVFTGANKAED 71
Query: 99 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
K+Y RHSG G +K E F L + P ++ + AVRGMLPK LGR + LK+Y G HP
Sbjct: 72 KLYHRHSGYFGSVKSEKFGDLLEKNPAKLYKLAVRGMLPKTNLGRAMLKKLKIYAGSEHP 131
Query: 159 HEAQ 162
H AQ
Sbjct: 132 HTAQ 135
>DICTYBASE|DDB_G0274959 [details] [associations]
symbol:mrpl13 "ribosomal protein L13, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
dictyBase:DDB_G0274959 GO:GO:0006412 EMBL:AAFI02000012
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
HAMAP:MF_01366_B RefSeq:XP_644226.1 ProteinModelPortal:Q554U7
STRING:Q554U7 EnsemblProtists:DDB0217569 GeneID:8619655
KEGG:ddi:DDB_G0274959 InParanoid:Q554U7 OMA:HIIRHAV Uniprot:Q554U7
Length = 227
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 58/127 (45%), Positives = 78/127 (61%)
Query: 38 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDM--GAYVIVVNAEKVAVSGKK 95
S W+V+DA+ +GRLA+ I+ +RGK+ Y SV + G YV+V+NA KV +GKK
Sbjct: 12 SSHLWHVIDASGHRVGRLATKISELLRGKHKPIYDRSVPLECGDYVVVLNAHKVEFTGKK 71
Query: 96 RTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGP 155
QK+YR+HSG PGG+KE + PE II HAV GM+PK L LK+Y G
Sbjct: 72 WDQKMYRKHSGYPGGLKETLAKDMLVENPEHIIRHAVMGMIPKNNSKFYLGKRLKIYDGI 131
Query: 156 NHPHEAQ 162
+PH+ Q
Sbjct: 132 FNPHQGQ 138
>SGD|S000005676 [details] [associations]
symbol:MRPL23 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IDA;IPI]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA;IPI] [GO:0032543 "mitochondrial translation"
evidence=IC] [GO:0005840 "ribosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
SGD:S000005676 EMBL:BK006948 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 EMBL:U55020 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC HOGENOM:HOG000225288 GeneTree:ENSGT00390000001515
OrthoDB:EOG46T69R EMBL:Z75058 EMBL:AY558133 PIR:S67038
RefSeq:NP_014793.1 ProteinModelPortal:Q12487 SMR:Q12487
DIP:DIP-5385N IntAct:Q12487 MINT:MINT-502479 STRING:Q12487
PaxDb:Q12487 PeptideAtlas:Q12487 EnsemblFungi:YOR150W GeneID:854321
KEGG:sce:YOR150W CYGD:YOR150w NextBio:976357 Genevestigator:Q12487
GermOnline:YOR150W Uniprot:Q12487
Length = 163
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 55/124 (44%), Positives = 79/124 (63%)
Query: 40 KTWYVVD-ATDK-ILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
+ W+ VD A DK LGRLAS IAI + G++ Y PS D G YV+V N +K+ V+GKK
Sbjct: 14 RLWHHVDVARDKRTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFE 73
Query: 98 QKIYRRHSGRPGGMKEETFDQL-QHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPN 156
QK Y HSGRPG +K +T +++ + I++ AV GMLPK +L ++ LKV+ G
Sbjct: 74 QKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGMLPKNKLRKQRLDRLKVFDGSE 133
Query: 157 HPHE 160
+P++
Sbjct: 134 NPYK 137
>ASPGD|ASPL0000005099 [details] [associations]
symbol:AN9469 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 GO:GO:0006412 EMBL:BN001301 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 OMA:YTPHMDC
HOGENOM:HOG000225288 EMBL:AACD01000194 RefSeq:XP_868851.1
ProteinModelPortal:Q5AQG1 STRING:Q5AQG1
EnsemblFungi:CADANIAT00007061 GeneID:3684066 KEGG:ani:AN9469.2
Uniprot:Q5AQG1
Length = 166
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 51/124 (41%), Positives = 76/124 (61%)
Query: 40 KTWYVVDA-TD-KILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
+ W++VD +D + LGRLAS+IA+ + GKN Y PS D G YV+ V + +GKKR
Sbjct: 14 RAWHLVDVGSDGRSLGRLASSIALILMGKNKPIYDPSTDCGDYVVAVGCHDLHTTGKKRF 73
Query: 98 QKIYRRHSGRPGGMKEETFDQLQHRIPE-RIIEHAVRGMLPKGRLGRELFTHLKVYKGPN 156
QK Y H+ RPG ++ T D++ + ++ AVRGMLPK RL + LK ++G +
Sbjct: 74 QKKYYTHTTRPGSLRSMTMDKMFEKWGGGEVLRRAVRGMLPKNRLRDKRLARLKTFEGVD 133
Query: 157 HPHE 160
HP++
Sbjct: 134 HPYK 137
>POMBASE|SPBC16G5.04 [details] [associations]
symbol:mrpl23 "mitochondrial ribosomal protein subunit
L13 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
PomBase:SPBC16G5.04 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC HOGENOM:HOG000225288 PIR:T39596
RefSeq:NP_596753.1 ProteinModelPortal:O60118 STRING:O60118
EnsemblFungi:SPBC16G5.04.1 GeneID:2540088 KEGG:spo:SPBC16G5.04
OrthoDB:EOG46T69R NextBio:20801225 Uniprot:O60118
Length = 157
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 45/123 (36%), Positives = 70/123 (56%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
K W+ V A + LGRLAS IA + GK+ Y P+ D G V+V + ++ +SG+K
Sbjct: 14 KVWHHVSAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLENH 73
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPER-IIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
Y HSG+PG +KE T +++ + + ++ AV GMLP+ +L L +Y G HP
Sbjct: 74 KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAEHP 133
Query: 159 HEA 161
++A
Sbjct: 134 YKA 136
>TAIR|locus:2082304 [details] [associations]
symbol:AT3G01790 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
OMA:FEITQVA EMBL:BT010192 EMBL:AK227266 IPI:IPI00520902
RefSeq:NP_186828.2 RefSeq:NP_850494.1 UniGene:At.41230
ProteinModelPortal:Q7XA68 SMR:Q7XA68 STRING:Q7XA68 PaxDb:Q7XA68
PRIDE:Q7XA68 EnsemblPlants:AT3G01790.1 EnsemblPlants:AT3G01790.2
GeneID:821078 KEGG:ath:AT3G01790 TAIR:At3g01790 InParanoid:Q7XA68
PhylomeDB:Q7XA68 ProtClustDB:PLN00205 Genevestigator:Q7XA68
Uniprot:Q7XA68
Length = 205
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 48/138 (34%), Positives = 78/138 (56%)
Query: 42 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 101
W V DA ++LGRLAS I+ ++ K+ TY P+ D G IV+NA+++ +G+K T K Y
Sbjct: 32 WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91
Query: 102 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEA 161
R H+G G +KE + + P +I AV MLP L + L++++G HP
Sbjct: 92 RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 150
Query: 162 QQPIE-LPIRDKRIQKQR 178
+P+E + +R+++ R
Sbjct: 151 DKPLEPFVMPPRRVREMR 168
>CGD|CAL0004144 [details] [associations]
symbol:orf19.3348 species:5476 "Candida albicans" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 CGD:CAL0004144 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000045 EMBL:AACQ01000042
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
RefSeq:XP_718171.1 RefSeq:XP_718438.1 ProteinModelPortal:Q5A8Y6
STRING:Q5A8Y6 GeneID:3639931 GeneID:3640222 KEGG:cal:CaO19.10856
KEGG:cal:CaO19.3348 Uniprot:Q5A8Y6
Length = 176
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 40 KTWYVVD--ATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
+ W+ VD A ++ LGRLAS+IAI + GK+ TYTP+ D G YV+V N + V+G K
Sbjct: 14 RVWHHVDVAADNRSLGRLASSIAITLMGKHKPTYTPNRDHGDYVVVTNCAHLKVTGNKLK 73
Query: 98 QKIYRRHSGRPGGMKEETFDQL-QHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPN 156
+K Y H+ RPG ++ +++ ++ II+ AV+GM+PK + LK++ G +
Sbjct: 74 EKTYWSHTTRPGTLRLVPMERMIDNKGYGEIIKRAVKGMIPKNKHRLVRMDRLKLFDGDD 133
Query: 157 HPHE 160
HP++
Sbjct: 134 HPYK 137
>ZFIN|ZDB-GENE-050522-167 [details] [associations]
symbol:mrpl13 "mitochondrial ribosomal protein L13"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
ZFIN:ZDB-GENE-050522-167 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OrthoDB:EOG4Z8XXJ EMBL:BC095074
IPI:IPI00607407 RefSeq:NP_001018370.1 UniGene:Dr.82561
ProteinModelPortal:Q504D1 STRING:Q504D1 GeneID:553555
KEGG:dre:553555 InParanoid:Q504D1 NextBio:20880297 Uniprot:Q504D1
Length = 179
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/148 (33%), Positives = 82/148 (55%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
++W+++DA + G++AS A+ ++GK+ Y P D+G +V+V+N + +A SG K QK
Sbjct: 16 RSWFLIDARMQPPGKIASMCAVRLQGKHKPIYHPLSDIGDHVVVMNTKHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKG---P- 155
+Y H+G PG K+ T QL + II+ AV GMLP+ R + L ++ P
Sbjct: 76 VYSSHTGHPGSFKQVTAAQLHRKDSTAIIKLAVYGMLPRNLTRRTMMQRLHLFPDDVLPE 135
Query: 156 ----NHPHEAQQPIELPIR-DKRIQKQR 178
N E QP E+P + + Q++R
Sbjct: 136 DILKNLTEELPQPREIPRKLSEYTQEER 163
>UNIPROTKB|E2RT81 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 OMA:VQQWATF
EMBL:AAEX03008768 Ensembl:ENSCAFT00000001460 Uniprot:E2RT81
Length = 179
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 44/131 (33%), Positives = 73/131 (55%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA+ +I ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG K+ T QL + P I++ A+ GMLPK R L L ++ + P
Sbjct: 76 VYSSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPE 135
Query: 160 EAQQPI--ELP 168
+ ++ + ELP
Sbjct: 136 DIRKNLVEELP 146
>UNIPROTKB|J9P023 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 EMBL:AAEX03008768
Ensembl:ENSCAFT00000045486 Uniprot:J9P023
Length = 178
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 44/131 (33%), Positives = 73/131 (55%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA+ +I ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG K+ T QL + P I++ A+ GMLPK R L L ++ + P
Sbjct: 76 VYSSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPE 135
Query: 160 EAQQPI--ELP 168
+ ++ + ELP
Sbjct: 136 DIRKNLVEELP 146
>UNIPROTKB|Q3SYS1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9913 "Bos taurus" [GO:0005761 "mitochondrial ribosome"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 PDB:2FTC PDBsum:2FTC
EMBL:BC103423 IPI:IPI00707300 RefSeq:NP_001029977.1
UniGene:Bt.49122 ProteinModelPortal:Q3SYS1 STRING:Q3SYS1
PRIDE:Q3SYS1 Ensembl:ENSBTAT00000008903 GeneID:617901
KEGG:bta:617901 CTD:28998 GeneTree:ENSGT00390000001515
HOVERGEN:HBG036111 InParanoid:Q3SYS1 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EvolutionaryTrace:Q3SYS1 NextBio:20900892 Uniprot:Q3SYS1
Length = 178
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 43/131 (32%), Positives = 72/131 (54%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA+ ++ ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG K+ T QL + P I++ A+ GMLPK R L L ++ + P
Sbjct: 76 VYSSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPE 135
Query: 160 EAQQPI--ELP 168
+ + + ELP
Sbjct: 136 DILKNLTEELP 146
>MGI|MGI:2137218 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005761 "mitochondrial ribosome" evidence=ISO] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
MGI:MGI:2137218 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111
OMA:VQQWATF OrthoDB:EOG4Z8XXJ EMBL:AB049641 EMBL:AK003283
EMBL:BC060968 IPI:IPI00134011 RefSeq:NP_081035.1 UniGene:Mm.236795
ProteinModelPortal:Q9D1P0 SMR:Q9D1P0 STRING:Q9D1P0
PhosphoSite:Q9D1P0 PaxDb:Q9D1P0 PRIDE:Q9D1P0
Ensembl:ENSMUST00000172387 GeneID:68537 KEGG:mmu:68537
UCSC:uc007vsf.1 InParanoid:Q9D1P0 NextBio:327412 Bgee:Q9D1P0
CleanEx:MM_MRPL13 Genevestigator:Q9D1P0
GermOnline:ENSMUSG00000022370 Uniprot:Q9D1P0
Length = 178
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 44/140 (31%), Positives = 76/140 (54%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA + ++G N Y D G +V+++N +A SG K QK
Sbjct: 16 RMWYLLDGKMQPPGKLAVIASNKLQGLNKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG ++ T QL + P I++ A+ GMLPK R + L ++ + P
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPE 135
Query: 160 EAQQPI--ELPIRDKRIQKQ 177
+ + + ELP + +R+ K+
Sbjct: 136 DILKNLVEELP-QPRRVPKR 154
>UNIPROTKB|Q9BYD1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IDA;NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005761 "mitochondrial ribosome" evidence=IDA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AB049640 EMBL:CH471060 GO:GO:0006412 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EMBL:AF112214 EMBL:AK311924 EMBL:BC009190 EMBL:BC021744
IPI:IPI00022403 RefSeq:NP_054797.2 UniGene:Hs.333823
ProteinModelPortal:Q9BYD1 SMR:Q9BYD1 IntAct:Q9BYD1 STRING:Q9BYD1
PhosphoSite:Q9BYD1 DMDM:22257023 PaxDb:Q9BYD1 PRIDE:Q9BYD1
DNASU:28998 Ensembl:ENST00000306185 GeneID:28998 KEGG:hsa:28998
UCSC:uc003ypa.3 GeneCards:GC08M121477 HGNC:HGNC:14278 MIM:610200
neXtProt:NX_Q9BYD1 PharmGKB:PA30942 InParanoid:Q9BYD1
PhylomeDB:Q9BYD1 GenomeRNAi:28998 NextBio:51932 ArrayExpress:Q9BYD1
Bgee:Q9BYD1 CleanEx:HS_MRPL13 Genevestigator:Q9BYD1
GermOnline:ENSG00000172172 Uniprot:Q9BYD1
Length = 178
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 45/140 (32%), Positives = 77/140 (55%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA+ +I ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG ++ T QL R P I++ A+ GMLPK R + L ++ P
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPE 135
Query: 160 EAQQPI--ELPIRDKRIQKQ 177
+ + + ELP + ++I K+
Sbjct: 136 DILKNLVEELP-QPRKIPKR 154
>UNIPROTKB|F1S286 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005761 "mitochondrial ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0003735 GO:GO:0005761 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 CTD:28998
GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:CU302271
EMBL:CU468161 RefSeq:NP_001230344.1 UniGene:Ssc.20756
Ensembl:ENSSSCT00000006579 GeneID:100153348 KEGG:ssc:100153348
Uniprot:F1S286
Length = 178
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 41/131 (31%), Positives = 72/131 (54%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA+ ++ ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG ++ T QL + P I++ A+ GMLPK R + L ++ + P
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPE 135
Query: 160 EAQQPI--ELP 168
+ + + ELP
Sbjct: 136 DILKNLVEELP 146
>RGD|1359587 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005761 "mitochondrial ribosome"
evidence=IEA;ISO] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 RGD:1359587 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CH473950 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 CTD:28998
GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111 OMA:VQQWATF
OrthoDB:EOG4Z8XXJ EMBL:BC084710 IPI:IPI00366411
RefSeq:NP_001006986.1 UniGene:Rn.107776 STRING:Q5XFW4
Ensembl:ENSRNOT00000005815 GeneID:299938 KEGG:rno:299938
UCSC:RGD:1359587 InParanoid:Q5XFW4 NextBio:646013
Genevestigator:Q5XFW4 Uniprot:Q5XFW4
Length = 178
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 43/140 (30%), Positives = 76/140 (54%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+ WY++D + G+LA+ + ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RMWYLLDGKMQPPGKLAAIASNKLQGLHKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQK 75
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 159
+Y H+G PGG ++ T QL + P I++ A GMLPK R + L ++ + P
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHLKDPVAIVKLATYGMLPKNLHRRTMMQRLHLFPDEDIPE 135
Query: 160 EAQQPI--ELPIRDKRIQKQ 177
+ + + ELP + +R+ K+
Sbjct: 136 DILKNLVEELP-QPRRVPKR 154
>UNIPROTKB|E5RJI7 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC107877 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
HGNC:HGNC:14278 IPI:IPI01011492 ProteinModelPortal:E5RJI7
SMR:E5RJI7 Ensembl:ENST00000518918 ArrayExpress:E5RJI7 Bgee:E5RJI7
Uniprot:E5RJI7
Length = 148
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 42/127 (33%), Positives = 70/127 (55%)
Query: 53 GRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMK 112
G+LA+ +I ++G + Y D G +V+++N +A SG K QK+Y H+G PGG +
Sbjct: 5 GKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFR 64
Query: 113 EETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPI--ELPIR 170
+ T QL R P I++ A+ GMLPK R + L ++ P + + + ELP +
Sbjct: 65 QVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELP-Q 123
Query: 171 DKRIQKQ 177
++I K+
Sbjct: 124 PRKIPKR 130
>UNIPROTKB|K7GP19 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
GeneTree:ENSGT00390000001515 EMBL:CU302271 EMBL:CU468161
Ensembl:ENSSSCT00000034332 Uniprot:K7GP19
Length = 154
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 38/118 (32%), Positives = 65/118 (55%)
Query: 53 GRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMK 112
G+LA+ ++ ++G + Y D G +V+++N +A SG K QK+Y H+G PGG +
Sbjct: 5 GKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFR 64
Query: 113 EETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPI--ELP 168
+ T QL + P I++ A+ GMLPK R + L ++ + P + + + ELP
Sbjct: 65 QVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELP 122
>GENEDB_PFALCIPARUM|PFB0645c [details] [associations]
symbol:PFB0645c "Ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 EMBL:AE001362 GO:GO:0022625
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 PIR:F71609 RefSeq:XP_001349647.1
ProteinModelPortal:O96222 EnsemblProtists:PFB0645c:mRNA
GeneID:812729 KEGG:pfa:PFB0645c EuPathDB:PlasmoDB:PF3D7_0214200
HOGENOM:HOG000284339 OMA:IVVNAIH ProtClustDB:CLSZ2435818
Uniprot:O96222
Length = 212
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 46/139 (33%), Positives = 70/139 (50%)
Query: 42 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 101
W+V+DAT+K +G LA+ I+ ++GK Y P+ + VIVVNA V G KIY
Sbjct: 66 WFVIDATNKSVGSLAACISKLLQGKYRVDYNPNKVNSSSVIVVNAIHVKFYGHTWDTKIY 125
Query: 102 R-RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHE 160
+ K + + R P I+ AV+ MLP RL + + L VY G HPH
Sbjct: 126 KFPRKSHSKSHKILSCKTVFARNPSMILNLAVKRMLPNNRLRQIFYRKLYVYPGALHPHW 185
Query: 161 AQQPIELPIRD--KRIQKQ 177
+ +P ++ K+ ++Q
Sbjct: 186 GIPQVVVPKKNVVKKEEQQ 204
>UNIPROTKB|O96222 [details] [associations]
symbol:PFB0645c "Mitochondrial large ribosomal subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 EMBL:AE001362 GO:GO:0022625
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 PIR:F71609 RefSeq:XP_001349647.1
ProteinModelPortal:O96222 EnsemblProtists:PFB0645c:mRNA
GeneID:812729 KEGG:pfa:PFB0645c EuPathDB:PlasmoDB:PF3D7_0214200
HOGENOM:HOG000284339 OMA:IVVNAIH ProtClustDB:CLSZ2435818
Uniprot:O96222
Length = 212
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 46/139 (33%), Positives = 70/139 (50%)
Query: 42 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 101
W+V+DAT+K +G LA+ I+ ++GK Y P+ + VIVVNA V G KIY
Sbjct: 66 WFVIDATNKSVGSLAACISKLLQGKYRVDYNPNKVNSSSVIVVNAIHVKFYGHTWDTKIY 125
Query: 102 R-RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHE 160
+ K + + R P I+ AV+ MLP RL + + L VY G HPH
Sbjct: 126 KFPRKSHSKSHKILSCKTVFARNPSMILNLAVKRMLPNNRLRQIFYRKLYVYPGALHPHW 185
Query: 161 AQQPIELPIRD--KRIQKQ 177
+ +P ++ K+ ++Q
Sbjct: 186 GIPQVVVPKKNVVKKEEQQ 204
>FB|FBgn0032720 [details] [associations]
symbol:mRpL13 "mitochondrial ribosomal protein L13"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS;NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS;NAS] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISS;NAS] InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:AE014134
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
CTD:28998 GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:BT053702
RefSeq:NP_523598.2 UniGene:Dm.2753 ProteinModelPortal:Q9VJ38
SMR:Q9VJ38 STRING:Q9VJ38 PaxDb:Q9VJ38 EnsemblMetazoa:FBtr0089318
GeneID:35145 KEGG:dme:Dmel_CG10603 FlyBase:FBgn0032720
InParanoid:Q9VJ38 OrthoDB:EOG4WM39Z PhylomeDB:Q9VJ38
GenomeRNAi:35145 NextBio:792084 GermOnline:CG10603 Uniprot:Q9VJ38
Length = 178
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 38/140 (27%), Positives = 65/140 (46%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
+TW++ D T + A + H+ G Y P D G +V+++N ++A+ G + ++
Sbjct: 15 RTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLINTREIALPGDEWVKR 74
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE-LFTHLKVYKGPNHP 158
+Y H+G PGG QL + P +++ AV + +G L R L ++ P
Sbjct: 75 VYFHHTGYPGGASWTLAWQLHEKDPTMVMKKAVYNSM-RGNLQRRHTMQRLHLFADDQVP 133
Query: 159 HEAQQPIELPIRDKRIQKQR 178
E Q + IR R QR
Sbjct: 134 EEILQNVTNQIRTPRSIPQR 153
>SGD|S000005013 [details] [associations]
symbol:RPL16B "Ribosomal 60S subunit protein L16B"
species:4932 "Saccharomyces cerevisiae" [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;TAS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0002181 "cytoplasmic translation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=TAS] [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 SGD:S000005013
EMBL:BK006947 GO:GO:0003723 GO:GO:0003735 GO:GO:0002181 EMBL:X86470
eggNOG:COG0102 GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872
OMA:RSAEYYA Gene3D:3.90.1180.10 PANTHER:PTHR11545
PANTHER:PTHR11545:SF3 SUPFAM:SSF52161 TIGRFAMs:TIGR01077
GeneTree:ENSGT00390000010799 OrthoDB:EOG4C2MKV EMBL:Z71345
PIR:S53911 RefSeq:NP_014330.1 ProteinModelPortal:P26785 SMR:P26785
IntAct:P26785 STRING:P26785 PaxDb:P26785 PeptideAtlas:P26785
EnsemblFungi:YNL069C GeneID:855655 KEGG:sce:YNL069C NextBio:979911
Genevestigator:P26785 GermOnline:YNL069C Uniprot:P26785
Length = 198
Score = 128 (50.1 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+DA D +LGRLASTIA + G ++VV AE + +SG+ K+
Sbjct: 7 VIDAKDHLLGRLASTIAKQVLN------------GQKIVVVRAEALNISGEFFRNKLKYH 54
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R +T R P RI+ A+RGM+ K G+ LK+++G P++ +
Sbjct: 55 DFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKK 114
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 115 KRVVVPQALRVLRLKPGR 132
>POMBASE|SPAC23A1.11 [details] [associations]
symbol:rpl1602 "60S ribosomal protein L13/L16
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002181
"cytoplasmic translation" evidence=NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
"translation" evidence=ISO] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 PomBase:SPAC23A1.11 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 OMA:FYRNKIK PIR:T38231 RefSeq:NP_594441.1
ProteinModelPortal:O42848 SMR:O42848 STRING:O42848 PRIDE:O42848
EnsemblFungi:SPAC23A1.11.1 GeneID:2542006 KEGG:spo:SPAC23A1.11
OrthoDB:EOG4C2MKV NextBio:20803086 Uniprot:O42848
Length = 197
Score = 119 (46.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 42/138 (30%), Positives = 63/138 (45%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+DA +LGRLAS +A + G G V+VV E++ +SG K+
Sbjct: 9 VIDAKGHLLGRLASVVAKQLLG------------GQKVVVVRCEELNISGHFFRNKLKYL 56
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R + R P RI + AVRGMLP K G+ HL+ +G P + Q
Sbjct: 57 AYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQ 116
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 117 KRVVVPAALRVLRLKPGR 134
>POMBASE|SPBC839.13c [details] [associations]
symbol:rpl1601 "60S ribosomal protein L13/L16
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002181
"cytoplasmic translation" evidence=NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006412 "translation" evidence=ISO] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISO]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
PomBase:SPBC839.13c EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003735 GO:GO:0002181 eggNOG:COG0102 GO:GO:0022625
HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 OMA:HYDTIKQ OrthoDB:EOG4C2MKV EMBL:AB016008
PIR:T40720 PIR:T43381 RefSeq:NP_595253.1 ProteinModelPortal:O42991
SMR:O42991 STRING:O42991 EnsemblFungi:SPBC839.13c.1 GeneID:2541175
KEGG:spo:SPBC839.13c NextBio:20802287 Uniprot:O42991
Length = 197
Score = 119 (46.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 42/138 (30%), Positives = 63/138 (45%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+DA +LGRLAS +A + G G V+VV E++ +SG K+
Sbjct: 9 VIDAKGHLLGRLASVVAKQLLG------------GQKVVVVRCEELNISGHFFRNKLKYL 56
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R + R P RI + AVRGMLP K G+ HL+ +G P + Q
Sbjct: 57 AYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQ 116
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 117 KRVVVPAALRVLRLKPGR 134
>UNIPROTKB|G4MLS0 [details] [associations]
symbol:MGG_05449 "60S ribosomal protein L16" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0006412
GO:GO:0003735 EMBL:CM001231 GO:GO:0043581 GO:GO:0015934 KO:K02872
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 RefSeq:XP_003710310.1
ProteinModelPortal:G4MLS0 SMR:G4MLS0 EnsemblFungi:MGG_05449T0
GeneID:2675933 KEGG:mgr:MGG_05449 Uniprot:G4MLS0
Length = 202
Score = 119 (46.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 42/139 (30%), Positives = 63/139 (45%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI-YR 102
V+D +LGRLAS +A K L G ++VV E + +SG+ K+ Y
Sbjct: 9 VIDGKGHLLGRLASIVA-----KQLLE-------GQKIVVVRCEALNISGEFFRAKLKYH 56
Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
H + R P R+ AVRGM+P K G LKV++G P++
Sbjct: 57 AHLRKITRYNPTRGGPFHFRAPSRVFYKAVRGMMPHKTARGTAALERLKVFEGVPPPYDK 116
Query: 162 QQPIELP--IRDKRIQKQR 178
Q+ + +P +R R+Q R
Sbjct: 117 QKKMVVPQALRVLRLQPGR 135
>TAIR|locus:2098530 [details] [associations]
symbol:AT3G07110 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0009506
GO:GO:0009507 EMBL:CP002686 GO:GO:0005730 GO:GO:0016020
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02872
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 UniGene:At.20766 OMA:HYDTIKQ
IPI:IPI00656921 RefSeq:NP_001030654.1 ProteinModelPortal:F4JD96
SMR:F4JD96 PRIDE:F4JD96 EnsemblPlants:AT3G07110.2 GeneID:819897
KEGG:ath:AT3G07110 Uniprot:F4JD96
Length = 207
Score = 119 (46.9 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 40/127 (31%), Positives = 62/127 (48%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI-YR 102
VVDA +LGRLAS +A K+L G ++VV E++ +SG QK+ Y
Sbjct: 13 VVDARHHMLGRLASVVA-----KDLLN-------GQNIVVVRCEEICLSGGLVRQKMKYM 60
Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
R + K + + R P +I VRGM+P K + G LKV++G P++
Sbjct: 61 RFLRKRMNTKP-SHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDK 119
Query: 162 QQPIELP 168
+ + +P
Sbjct: 120 IKRMVVP 126
>TAIR|locus:2156569 [details] [associations]
symbol:AT5G48760 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=IEA;ISS] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IDA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0009664 "plant-type cell wall organization"
evidence=RCA] [GO:0042545 "cell wall modification" evidence=RCA]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0003735
EMBL:AB012242 GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872
ProtClustDB:CLSN2684535 Gene3D:3.90.1180.10 PANTHER:PTHR11545
PANTHER:PTHR11545:SF3 SUPFAM:SSF52161 TIGRFAMs:TIGR01077
EMBL:AY090359 EMBL:AY122902 EMBL:AY088191 EMBL:Z26407
IPI:IPI00531944 RefSeq:NP_001078737.1 RefSeq:NP_199687.1
UniGene:At.20766 UniGene:At.25519 UniGene:At.72564
ProteinModelPortal:Q9FKC0 SMR:Q9FKC0 STRING:Q9FKC0 PRIDE:Q9FKC0
EnsemblPlants:AT5G48760.1 EnsemblPlants:AT5G48760.2 GeneID:834934
KEGG:ath:AT5G48760 GeneFarm:214 TAIR:At5g48760 InParanoid:Q9FKC0
OMA:EFGPYFP PhylomeDB:Q9FKC0 Genevestigator:Q9FKC0
GermOnline:AT5G48760 Uniprot:Q9FKC0
Length = 206
Score = 118 (46.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/127 (32%), Positives = 60/127 (47%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI-YR 102
VVDA +LGRLAS I K L G V++V E++ +SG QK+ Y
Sbjct: 13 VVDARHHMLGRLAS-----ITAKELLN-------GQKVVIVRCEEICLSGGLVRQKMKYM 60
Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
R + K + + R P +I VRGM+P K + G LKVY+G P++
Sbjct: 61 RFLRKRMNTKP-SHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDK 119
Query: 162 QQPIELP 168
+ + +P
Sbjct: 120 IKRMVIP 126
>UNIPROTKB|Q95307 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9823
"Sus scrofa" [GO:1901194 "negative regulation of formation of
translation preinitiation complex" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0017148 GO:GO:0006412
GO:GO:0003735 GO:GO:0015934 eggNOG:COG0102 HOGENOM:HOG000225289
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 HOVERGEN:HBG062176
OrthoDB:EOG479F83 GO:GO:1901194 EMBL:Z81152 EMBL:Z84103
STRING:Q95307 PRIDE:Q95307 Uniprot:Q95307
Length = 137
Score = 103 (41.3 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 10 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 69
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 70 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 117
>TAIR|locus:2087268 [details] [associations]
symbol:AT3G24830 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=IEA;ISS] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0042545 "cell wall modification"
evidence=RCA] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0016020 GO:GO:0006412 GO:GO:0003735
EMBL:AB028609 eggNOG:COG0102 GO:GO:0022625 EMBL:AY080870
EMBL:AY150392 IPI:IPI00547010 RefSeq:NP_189127.1 UniGene:At.23983
UniGene:At.2870 UniGene:At.43372 ProteinModelPortal:Q9LRX8
SMR:Q9LRX8 IntAct:Q9LRX8 STRING:Q9LRX8 PaxDb:Q9LRX8 PRIDE:Q9LRX8
EnsemblPlants:AT3G24830.1 GeneID:822081 KEGG:ath:AT3G24830
GeneFarm:158 TAIR:At3g24830 HOGENOM:HOG000225289 InParanoid:Q9LRX8
KO:K02872 OMA:RSAEYYA PhylomeDB:Q9LRX8 ProtClustDB:CLSN2684535
Genevestigator:Q9LRX8 GermOnline:AT3G24830 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 Uniprot:Q9LRX8
Length = 206
Score = 115 (45.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 41/127 (32%), Positives = 60/127 (47%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI-YR 102
VVDA + GRLAS IA K L G V+VV E++ +SG QK+ Y
Sbjct: 13 VVDARHHMCGRLASIIA-----KELLN-------GQSVVVVRCEEICLSGGLVRQKMKYM 60
Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
R + K + + R P +I VRGM+P K + G LKV++G P++
Sbjct: 61 RFLRKRMNTKP-SHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDK 119
Query: 162 QQPIELP 168
+ + +P
Sbjct: 120 VKRMVIP 126
>ASPGD|ASPL0000014757 [details] [associations]
symbol:rpl16a species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 EMBL:BN001302 GO:GO:0003735 EMBL:AACD01000068
GO:GO:0015934 HOGENOM:HOG000225289 KO:K02872 OMA:RSAEYYA
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 RefSeq:XP_661806.1
ProteinModelPortal:G5EB54 SMR:G5EB54 EnsemblFungi:CADANIAT00004462
GeneID:2873625 KEGG:ani:AN4202.2 Uniprot:G5EB54
Length = 202
Score = 114 (45.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 41/139 (29%), Positives = 64/139 (46%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI-YR 102
V+D +LGRLAST+A K L G ++VV E + +SG+ K+ Y
Sbjct: 9 VIDGKGHLLGRLASTVA-----KQLLN-------GQKIVVVRCEALNISGEFFRAKLKYH 56
Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
+ + R P RI AVRGM+P K G LKV++G P++
Sbjct: 57 AYLRKITRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDK 116
Query: 162 QQPIELP--IRDKRIQKQR 178
++ + +P +R R++ R
Sbjct: 117 KKRVVVPQALRVLRLRPGR 135
>GENEDB_PFALCIPARUM|PF10_0043 [details] [associations]
symbol:PF10_0043 "ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0006412 GO:GO:0003735
EMBL:AE014185 GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 HSSP:O59300 ProtClustDB:PTZ00068
RefSeq:XP_001347328.1 ProteinModelPortal:Q8IJZ7 SMR:Q8IJZ7
IntAct:Q8IJZ7 MINT:MINT-1665265 PRIDE:Q8IJZ7
EnsemblProtists:PF10_0043:mRNA GeneID:810201 KEGG:pfa:PF10_0043
EuPathDB:PlasmoDB:PF3D7_1004000 OMA:VAVRCED Uniprot:Q8IJZ7
Length = 202
Score = 114 (45.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 44/142 (30%), Positives = 63/142 (44%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
K YV+D +LGRLAS IA K L G ++ V E + +SG K
Sbjct: 3 KKEYVIDCKGHLLGRLASLIA-----KELLN-------GQRIVAVRCEDINISGSLYRNK 50
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHP 158
+ + R L R P +I+ VRGMLP K G+ LKV G +P
Sbjct: 51 LKYQEFLRLRTNTNPKKGPLHLREPSKILWRCVRGMLPHKTYKGQLALKKLKVCVGMPYP 110
Query: 159 HEAQQPIELP--IRDKRIQKQR 178
++ ++ LP +R R++K R
Sbjct: 111 YDKKKKYVLPSALRAFRLKKHR 132
>UNIPROTKB|Q8IJZ7 [details] [associations]
symbol:PF10_0043 "60S ribosomal protein L13, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISS] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 GO:GO:0006412 GO:GO:0003735 EMBL:AE014185
GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 HSSP:O59300 ProtClustDB:PTZ00068
RefSeq:XP_001347328.1 ProteinModelPortal:Q8IJZ7 SMR:Q8IJZ7
IntAct:Q8IJZ7 MINT:MINT-1665265 PRIDE:Q8IJZ7
EnsemblProtists:PF10_0043:mRNA GeneID:810201 KEGG:pfa:PF10_0043
EuPathDB:PlasmoDB:PF3D7_1004000 OMA:VAVRCED Uniprot:Q8IJZ7
Length = 202
Score = 114 (45.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 44/142 (30%), Positives = 63/142 (44%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 99
K YV+D +LGRLAS IA K L G ++ V E + +SG K
Sbjct: 3 KKEYVIDCKGHLLGRLASLIA-----KELLN-------GQRIVAVRCEDINISGSLYRNK 50
Query: 100 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHP 158
+ + R L R P +I+ VRGMLP K G+ LKV G +P
Sbjct: 51 LKYQEFLRLRTNTNPKKGPLHLREPSKILWRCVRGMLPHKTYKGQLALKKLKVCVGMPYP 110
Query: 159 HEAQQPIELP--IRDKRIQKQR 178
++ ++ LP +R R++K R
Sbjct: 111 YDKKKKYVLPSALRAFRLKKHR 132
>CGD|CAL0005216 [details] [associations]
symbol:RPL16A species:5476 "Candida albicans" [GO:0032040
"small-subunit processome" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 CGD:CAL0005216
GO:GO:0071216 GO:GO:0036180 GO:GO:0016020 GO:GO:0006412
GO:GO:0003735 GO:GO:0009267 EMBL:AACQ01000036 EMBL:AACQ01000035
GO:GO:0036170 GO:GO:0032040 GO:GO:0015934 eggNOG:COG0102
HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 RefSeq:XP_718943.1 RefSeq:XP_719047.1
ProteinModelPortal:Q5AB87 SMR:Q5AB87 STRING:Q5AB87 GeneID:3639338
GeneID:3639461 KEGG:cal:CaO19.13504 KEGG:cal:CaO19.6085
Uniprot:Q5AB87
Length = 200
Score = 113 (44.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 38/138 (27%), Positives = 64/138 (46%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+D +LGRLAS ++ I G V+VV E++ +SG+ K+
Sbjct: 9 VIDGKGHLLGRLASIVSKQILN------------GQKVVVVRCEELNISGEFFRNKLKYH 56
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R + R P RI+ A+RGM+P K G+ LKV++G P++ +
Sbjct: 57 DYLRKATRYNKKKGPFHFRAPSRILYKAIRGMIPHKTARGKAALERLKVFEGVPPPYDKK 116
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 117 KRVVVPQALRVLRLKPGR 134
>UNIPROTKB|Q5AB87 [details] [associations]
symbol:RPL16A "Likely cytosolic ribosomal protein L16"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0016020 "membrane"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0032040 "small-subunit processome" evidence=IDA] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 CGD:CAL0005216
GO:GO:0071216 GO:GO:0036180 GO:GO:0016020 GO:GO:0006412
GO:GO:0003735 GO:GO:0009267 EMBL:AACQ01000036 EMBL:AACQ01000035
GO:GO:0036170 GO:GO:0032040 GO:GO:0015934 eggNOG:COG0102
HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 RefSeq:XP_718943.1 RefSeq:XP_719047.1
ProteinModelPortal:Q5AB87 SMR:Q5AB87 STRING:Q5AB87 GeneID:3639338
GeneID:3639461 KEGG:cal:CaO19.13504 KEGG:cal:CaO19.6085
Uniprot:Q5AB87
Length = 200
Score = 113 (44.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 38/138 (27%), Positives = 64/138 (46%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+D +LGRLAS ++ I G V+VV E++ +SG+ K+
Sbjct: 9 VIDGKGHLLGRLASIVSKQILN------------GQKVVVVRCEELNISGEFFRNKLKYH 56
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R + R P RI+ A+RGM+P K G+ LKV++G P++ +
Sbjct: 57 DYLRKATRYNKKKGPFHFRAPSRILYKAIRGMIPHKTARGKAALERLKVFEGVPPPYDKK 116
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 117 KRVVVPQALRVLRLKPGR 134
>WB|WBGene00004428 [details] [associations]
symbol:rpl-16 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006412
GO:GO:0003735 GO:GO:0015934 eggNOG:COG0102 EMBL:Z46381
HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 OMA:FYRNKIK GeneTree:ENSGT00390000010799
EMBL:U31528 PIR:T23654 RefSeq:NP_497721.1 UniGene:Cel.23339
ProteinModelPortal:Q27389 SMR:Q27389 DIP:DIP-25636N
MINT:MINT-1065156 STRING:Q27389 PaxDb:Q27389
EnsemblMetazoa:M01F1.2.1 EnsemblMetazoa:M01F1.2.2 GeneID:175455
KEGG:cel:CELE_M01F1.2 UCSC:M01F1.2.2 CTD:175455 WormBase:M01F1.2
InParanoid:Q27389 NextBio:888232 Uniprot:Q27389
Length = 202
Score = 112 (44.5 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 38/137 (27%), Positives = 61/137 (44%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
++D + +LGRLAS +A K L G V+V+ AE++ +SG K+
Sbjct: 9 IIDGKNHLLGRLASIVA-----KKLL-------QGDKVVVLRAEEIVISGNFHRSKLKYM 56
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R +R P +I VRGMLP K G E +L+ Y+G ++
Sbjct: 57 SFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKT 116
Query: 163 QPIELPIRDK-RIQKQR 178
+ + P + R+Q +R
Sbjct: 117 KSLHAPSASRFRLQPRR 133
>SGD|S000001395 [details] [associations]
symbol:RPL16A "Ribosomal 60S subunit protein L16A"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;TAS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=TAS] [GO:0002181 "cytoplasmic translation" evidence=TAS]
[GO:0003723 "RNA binding" evidence=IDA] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 SGD:S000001395
EMBL:BK006942 GO:GO:0003723 GO:GO:0003735 GO:GO:0002181 EMBL:Z38059
PDB:4B6A PDBsum:4B6A GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 OMA:EFGPYFP PDB:1K5Y PDB:1S1I
PDB:3IZS PDB:3O58 PDB:3O5H PDB:3U5E PDB:3U5I PDBsum:1K5Y
PDBsum:1S1I PDBsum:3IZS PDBsum:3O58 PDBsum:3O5H PDBsum:3U5E
PDBsum:3U5I GeneTree:ENSGT00390000010799 OrthoDB:EOG4C2MKV
PIR:S48401 RefSeq:NP_012133.1 ProteinModelPortal:P26784 SMR:P26784
IntAct:P26784 MINT:MINT-2981627 STRING:P26784 PeptideAtlas:P26784
EnsemblFungi:YIL133C GeneID:854673 KEGG:sce:YIL133C
EvolutionaryTrace:P26784 NextBio:977265 ArrayExpress:P26784
Genevestigator:P26784 GermOnline:YIL133C Uniprot:P26784
Length = 199
Score = 110 (43.8 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 39/138 (28%), Positives = 65/138 (47%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+D ++GRLAS +A K L G ++VV AE++ +SG+ K+
Sbjct: 8 VIDGKGHLVGRLASVVA-----KQLLN-------GQKIVVVRAEELNISGEFFRNKLKYH 55
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R +T R P RI A+RGM+ K G+ LKV++G P++ +
Sbjct: 56 DFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKK 115
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 116 KRVVVPQALRVLRLKPGR 133
>TAIR|locus:2119335 [details] [associations]
symbol:AT4G13170 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0016020 GO:GO:0006412 GO:GO:0003735
EMBL:AL049751 EMBL:AL161535 eggNOG:COG0102 GO:GO:0022625
HOGENOM:HOG000225289 KO:K02872 ProtClustDB:CLSN2684535
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 EMBL:AY052263 EMBL:AY060518
IPI:IPI00537926 PIR:T07697 RefSeq:NP_193053.1 UniGene:At.3259
ProteinModelPortal:Q9SVR0 SMR:Q9SVR0 STRING:Q9SVR0 PaxDb:Q9SVR0
PRIDE:Q9SVR0 EnsemblPlants:AT4G13170.1 GeneID:826931
KEGG:ath:AT4G13170 GeneFarm:217 TAIR:At4g13170 InParanoid:Q9SVR0
OMA:FYRNKIK PhylomeDB:Q9SVR0 Genevestigator:Q9SVR0
GermOnline:AT4G13170 Uniprot:Q9SVR0
Length = 206
Score = 110 (43.8 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 40/127 (31%), Positives = 59/127 (46%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI-YR 102
VVD +LGRLAS A K L G V+VV E++ +SG QK+ Y
Sbjct: 13 VVDGRHHMLGRLASNTA-----KELLN-------GQEVVVVRCEEICLSGGLVRQKMKYM 60
Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
R + K + + R P +I VRGM+P K + G LKV++G P++
Sbjct: 61 RFLRKRMNTKP-SHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDK 119
Query: 162 QQPIELP 168
+ + +P
Sbjct: 120 IKRMVIP 126
>POMBASE|SPBC2G2.05 [details] [associations]
symbol:rpl1603 "60S ribosomal protein L13/L16
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002181
"cytoplasmic translation" evidence=NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
"translation" evidence=ISO] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 PomBase:SPBC2G2.05 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003735 GO:GO:0002181
eggNOG:COG0102 GO:GO:0022625 HOGENOM:HOG000225289 KO:K02872
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 OrthoDB:EOG4C2MKV PIR:T40144
RefSeq:NP_596434.1 ProteinModelPortal:O43004 SMR:O43004
STRING:O43004 EnsemblFungi:SPBC2G2.05.1 GeneID:2540373
KEGG:spo:SPBC2G2.05 OMA:GPKIPRR NextBio:20801501 Uniprot:O43004
Length = 197
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 41/138 (29%), Positives = 62/138 (44%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
++DA ++GRLAST+A K L G V+VV E++ +SG K+
Sbjct: 9 IIDAKGHLMGRLASTVA-----KQLLA-------GQKVVVVRCEELNISGHFFRNKLKYL 56
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R + R P RI AVRGMLP K G +L+ +G P + Q
Sbjct: 57 AYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQ 116
Query: 163 QPIELP--IRDKRIQKQR 178
+ + +P +R R++ R
Sbjct: 117 KRLVVPAALRVLRLKPSR 134
>UNIPROTKB|F1LYZ7 [details] [associations]
symbol:F1LYZ7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005822
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 IPI:IPI00769027 Ensembl:ENSRNOT00000061678
Uniprot:F1LYZ7
Length = 172
Score = 104 (41.7 bits), Expect = 0.00024, P = 0.00024
Identities = 30/126 (23%), Positives = 58/126 (46%)
Query: 53 GRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMK 112
G+LA+ + +G + D G ++++++ +A SG K K+ H G PGG +
Sbjct: 22 GKLAAVASNKWKGLHKPVCHQLGDCGDHIVIISTRHIAFSGNKWEGKVCSSHPGYPGGFR 81
Query: 113 EETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPI--ELPIR 170
+ Q + P +++ A LP+ R L ++ + P E + + ELP +
Sbjct: 82 QAAAAQRHLKDPVAMVKLATCDTLPEILHRRTRMQRLHLFPDEDIPEEILKDLVEELP-Q 140
Query: 171 DKRIQK 176
+R+ K
Sbjct: 141 PRRVPK 146
>FB|FBgn0037351 [details] [associations]
symbol:RpL13A "Ribosomal protein L13A" species:7227
"Drosophila melanogaster" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA]
[GO:0007219 "Notch signaling pathway" evidence=IGI] [GO:0008407
"chaeta morphogenesis" evidence=IMP] [GO:0005840 "ribosome"
evidence=IDA] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AE014297 GO:GO:0051298 GO:GO:0006412 GO:GO:0007219
GO:GO:0005840 GO:GO:0003735 GO:GO:0008407 GO:GO:0015934
eggNOG:COG0102 KO:K02872 Gene3D:3.90.1180.10 PANTHER:PTHR11545
PANTHER:PTHR11545:SF3 SUPFAM:SSF52161 TIGRFAMs:TIGR01077
OMA:FYRNKIK CTD:23521 GeneTree:ENSGT00390000010799 EMBL:AY051640
RefSeq:NP_649560.1 UniGene:Dm.4531 ProteinModelPortal:Q9VNE9
SMR:Q9VNE9 DIP:DIP-19002N IntAct:Q9VNE9 MINT:MINT-790225
STRING:Q9VNE9 PaxDb:Q9VNE9 PRIDE:Q9VNE9 EnsemblMetazoa:FBtr0078705
GeneID:40687 KEGG:dme:Dmel_CG1475 FlyBase:FBgn0037351
InParanoid:Q9VNE9 OrthoDB:EOG451C6S PhylomeDB:Q9VNE9 ChiTaRS:RPL13A
GenomeRNAi:40687 NextBio:820056 GermOnline:CG1475 Uniprot:Q9VNE9
Length = 205
Score = 104 (41.7 bits), Expect = 0.00050, P = 0.00050
Identities = 37/127 (29%), Positives = 56/127 (44%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
V+D +LGRLAS +A ++ G V VV E++ +SG KI
Sbjct: 10 VIDGRGHLLGRLASVVAKYLL------------QGGKVAVVRCEELNLSGHFYRNKIKFL 57
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
R R P RI AVRGM+P K + G+ L+V+ G P++ +
Sbjct: 58 AYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKR 117
Query: 163 QPIELPI 169
+ + +PI
Sbjct: 118 RRVVVPI 124
>UNIPROTKB|Q3SZ90 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9913
"Bos taurus" [GO:1901194 "negative regulation of formation of
translation preinitiation complex" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572 PROSITE:PS00783
GO:GO:0017148 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934
eggNOG:COG0102 HOGENOM:HOG000225289 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 OMA:FYRNKIK HOVERGEN:HBG062176 EMBL:BC103039
IPI:IPI00712384 RefSeq:NP_001070466.1 UniGene:Bt.49211
ProteinModelPortal:Q3SZ90 SMR:Q3SZ90 STRING:Q3SZ90 PRIDE:Q3SZ90
Ensembl:ENSBTAT00000005007 GeneID:767925 KEGG:bta:767925 CTD:23521
GeneTree:ENSGT00390000010799 InParanoid:Q3SZ90 OrthoDB:EOG479F83
NextBio:20918282 GO:GO:1901194 Uniprot:Q3SZ90
Length = 203
Score = 103 (41.3 bits), Expect = 0.00064, P = 0.00064
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 73
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 74 RAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVP 121
>UNIPROTKB|F1PI16 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9615
"Canis lupus familiaris" [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PROSITE:PS00783 GO:GO:0006412
GO:GO:0003735 GO:GO:0022625 KO:K02872 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 OMA:FYRNKIK CTD:23521
GeneTree:ENSGT00390000010799 UniGene:Cfa.40191 EMBL:AAEX03000800
RefSeq:XP_003432774.1 Ensembl:ENSCAFT00000005848 GeneID:403680
KEGG:cfa:403680 NextBio:20817184 Uniprot:F1PI16
Length = 203
Score = 103 (41.3 bits), Expect = 0.00064, P = 0.00064
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 73
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 74 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 121
>UNIPROTKB|Q9XSU0 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9615
"Canis lupus familiaris" [GO:1901194 "negative regulation of
formation of translation preinitiation complex" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005755 InterPro:IPR005822
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572 PROSITE:PS00783
GO:GO:0017148 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934
eggNOG:COG0102 HOGENOM:HOG000225289 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 HOVERGEN:HBG062176 PDB:2ZKR PDBsum:2ZKR
GO:GO:1901194 EMBL:DN325227 EMBL:AJ388525 EMBL:CO660712
UniGene:Cfa.40191 STRING:Q9XSU0 PRIDE:Q9XSU0
EvolutionaryTrace:Q9XSU0 Uniprot:Q9XSU0
Length = 203
Score = 103 (41.3 bits), Expect = 0.00064, P = 0.00064
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDF 73
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 74 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 121
>UNIPROTKB|P40429 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9606
"Homo sapiens" [GO:0006412 "translation" evidence=NAS;TAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IMP;IDA]
[GO:1901194 "negative regulation of formation of translation
preinitiation complex" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PROSITE:PS00783
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0017148 GO:GO:0006413
GO:GO:0003735 EMBL:CH471177 GO:GO:0071346 GO:GO:0006415
GO:GO:0006414 Reactome:REACT_1762 eggNOG:COG0102 GO:GO:0006614
GO:GO:0022625 GO:GO:0019083 HOGENOM:HOG000225289 KO:K02872
Gene3D:3.90.1180.10 PANTHER:PTHR11545 PANTHER:PTHR11545:SF3
SUPFAM:SSF52161 TIGRFAMs:TIGR01077 OMA:FYRNKIK HOVERGEN:HBG062176
CTD:23521 OrthoDB:EOG479F83 GO:GO:1901194 ChiTaRS:RPL13A
EMBL:X56932 EMBL:AB028893 EMBL:AK291120 EMBL:BC000514 EMBL:BC001675
EMBL:BC001836 EMBL:BC062537 EMBL:BC065236 EMBL:BC070223
EMBL:BC071929 IPI:IPI00304612 PIR:S29539 RefSeq:NP_001257420.1
RefSeq:NP_036555.1 UniGene:Hs.523185 ProteinModelPortal:P40429
SMR:P40429 IntAct:P40429 MINT:MINT-1417412 STRING:P40429
PhosphoSite:P40429 DMDM:730451 PaxDb:P40429 PRIDE:P40429
DNASU:23521 Ensembl:ENST00000391857 GeneID:23521 KEGG:hsa:23521
UCSC:uc002pny.3 GeneCards:GC19P049991 H-InvDB:HIX0027968
H-InvDB:HIX0158081 HGNC:HGNC:10304 HPA:HPA038751 neXtProt:NX_P40429
PharmGKB:PA38122 InParanoid:P40429 PhylomeDB:P40429
GenomeRNAi:23521 NextBio:45973 ArrayExpress:P40429 Bgee:P40429
CleanEx:HS_RPL13A Genevestigator:P40429 GermOnline:ENSG00000142541
Uniprot:P40429
Length = 203
Score = 103 (41.3 bits), Expect = 0.00064, P = 0.00064
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 73
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 74 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 121
>UNIPROTKB|Q4R8Z2 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9541
"Macaca fascicularis" [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:1901194 "negative regulation of
formation of translation preinitiation complex" evidence=ISS]
InterPro:IPR005755 InterPro:IPR005822 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PROSITE:PS00783 GO:GO:0017148
GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.1180.10
PANTHER:PTHR11545 PANTHER:PTHR11545:SF3 SUPFAM:SSF52161
TIGRFAMs:TIGR01077 HOVERGEN:HBG062176 GO:GO:1901194 EMBL:AB168305
ProteinModelPortal:Q4R8Z2 SMR:Q4R8Z2 PRIDE:Q4R8Z2 Uniprot:Q4R8Z2
Length = 203
Score = 103 (41.3 bits), Expect = 0.00064, P = 0.00064
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 73
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 74 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 121
>UNIPROTKB|Q5RA38 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9601
"Pongo abelii" [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:1901194 "negative regulation of formation of
translation preinitiation complex" evidence=ISS] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 GO:GO:0017148 GO:GO:0006412
GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.1180.10 PANTHER:PTHR11545
PANTHER:PTHR11545:SF3 SUPFAM:SSF52161 TIGRFAMs:TIGR01077
HOVERGEN:HBG062176 CTD:23521 GO:GO:1901194 EMBL:CR859183
RefSeq:NP_001125810.1 UniGene:Pab.7590 ProteinModelPortal:Q5RA38
SMR:Q5RA38 GeneID:100172738 KEGG:pon:100172738 InParanoid:Q5RA38
Uniprot:Q5RA38
Length = 203
Score = 103 (41.3 bits), Expect = 0.00064, P = 0.00064
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHF 73
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 74 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 121
>UNIPROTKB|F1RI01 [details] [associations]
symbol:RPL13A "60S ribosomal protein L13a" species:9823
"Sus scrofa" [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005755
InterPro:IPR005822 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 GO:GO:0006412 GO:GO:0003735
GO:GO:0015934 KO:K02872 Gene3D:3.90.1180.10 PANTHER:PTHR11545
PANTHER:PTHR11545:SF3 SUPFAM:SSF52161 TIGRFAMs:TIGR01077
OMA:FYRNKIK CTD:23521 GeneTree:ENSGT00390000010799 EMBL:FP102665
RefSeq:NP_001230997.1 UniGene:Ssc.17024 UniGene:Ssc.27927
Ensembl:ENSSSCT00000003516 GeneID:780432 KEGG:ssc:780432
ArrayExpress:F1RI01 Uniprot:F1RI01
Length = 204
Score = 103 (41.3 bits), Expect = 0.00065, P = 0.00065
Identities = 31/108 (28%), Positives = 48/108 (44%)
Query: 62 HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 121
H+ G+ A V +G V+VV E + +SG K+ R +
Sbjct: 15 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF 74
Query: 122 RIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELP 168
R P RI VRGMLP K + G+ LKV+ G P++ ++ + +P
Sbjct: 75 RAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.437 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 178 178 0.00086 109 3 11 22 0.40 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 61
No. of states in DFA: 607 (65 KB)
Total size of DFA: 174 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.58u 0.09s 16.67t Elapsed: 00:00:01
Total cpu time: 16.58u 0.09s 16.67t Elapsed: 00:00:01
Start: Fri May 10 23:10:50 2013 End: Fri May 10 23:10:51 2013