Query 030391
Match_columns 178
No_of_seqs 145 out of 1107
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_J 50S ribosomal protein L 100.0 6.8E-67 2.3E-71 414.6 11.5 142 25-169 1-142 (142)
2 3v2d_N 50S ribosomal protein L 100.0 1.9E-66 6.5E-71 411.2 11.4 140 25-169 1-140 (140)
3 2ftc_H L13MT, MRP-L13, 39S rib 100.0 1.4E-65 4.9E-70 409.4 12.6 147 25-171 1-147 (148)
4 3f1f_N 50S ribosomal protein L 100.0 1.6E-65 5.5E-70 414.2 8.8 152 13-169 12-163 (163)
5 3bbo_L Ribosomal protein L13; 100.0 1.6E-65 5.5E-70 435.7 8.1 158 21-178 93-250 (250)
6 2zjr_G 50S ribosomal protein L 100.0 1.2E-64 4.2E-69 412.7 11.7 152 15-171 19-170 (174)
7 1j3a_A 50S ribosomal protein L 100.0 3.7E-51 1.3E-55 324.3 5.6 118 42-172 1-120 (142)
8 4b6a_O 60S ribosomal protein L 100.0 2.2E-49 7.7E-54 328.8 5.2 127 39-177 3-130 (199)
9 1vq8_J 50S ribosomal protein L 100.0 6.7E-48 2.3E-52 306.6 4.1 116 38-172 5-121 (145)
10 4a17_I RPL13A, 60S ribosomal p 100.0 4.5E-47 1.5E-51 314.8 3.9 126 40-177 3-129 (198)
11 3iz5_K 60S ribosomal protein L 100.0 9.1E-46 3.1E-50 308.5 3.9 127 37-177 6-135 (206)
12 2zkr_j 60S ribosomal protein L 100.0 6.6E-45 2.2E-49 302.8 6.4 118 38-176 2-129 (203)
13 3jyw_M 60S ribosomal protein L 100.0 1.3E-44 4.6E-49 295.8 3.3 123 43-177 1-124 (178)
14 3koj_A Uncharacterized protein 46.0 11 0.00039 27.5 2.3 29 40-84 52-80 (108)
15 3stb_C RNA-editing complex pro 35.2 44 0.0015 26.1 4.2 33 38-85 83-115 (148)
16 4dam_A Single-stranded DNA-bin 30.6 27 0.00094 25.9 2.3 30 40-85 62-91 (128)
17 3vdy_A SSB, single-stranded DN 28.7 32 0.0011 24.6 2.3 30 39-84 48-77 (116)
18 2f1e_A Protein APAG; APAG prot 27.2 25 0.00085 26.5 1.6 14 38-51 48-61 (127)
19 1xvs_A Protein APAG; MCSG APC2 26.1 27 0.00093 26.3 1.6 14 38-51 47-60 (126)
20 3ulp_A Single-strand binding p 25.3 37 0.0013 24.6 2.2 30 39-84 52-82 (124)
21 2vw9_A Single-stranded DNA bin 25.3 39 0.0013 25.1 2.3 29 40-84 48-76 (134)
22 1tza_A APAG protein, SOR45; st 24.6 29 0.001 26.4 1.6 14 38-51 47-60 (134)
23 1z9f_A Single-strand binding p 23.9 46 0.0016 25.4 2.6 29 40-84 62-90 (153)
24 3afp_A Single-stranded DNA-bin 23.2 43 0.0015 25.9 2.3 29 40-84 52-80 (168)
25 1xq4_A Protein APAG; all beta 22.6 31 0.001 26.5 1.3 14 38-51 52-65 (139)
26 1eqq_A Single stranded DNA bin 22.2 47 0.0016 26.0 2.3 29 40-84 53-81 (178)
27 1qvc_A Single stranded DNA bin 21.7 55 0.0019 24.6 2.6 29 40-84 52-80 (145)
28 3tqy_A Single-stranded DNA-bin 20.9 52 0.0018 25.2 2.3 29 40-84 55-83 (158)
No 1
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=6.8e-67 Score=414.59 Aligned_cols=142 Identities=56% Similarity=0.925 Sum_probs=139.4
Q ss_pred hcccccCCCCCccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 030391 25 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 104 (178)
Q Consensus 25 ~~t~~~k~~~~~~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~h 104 (178)
|+||++++++ ++|+|+||||+|++||||||+||++|+|||||+||||+||||+|||||||+|.+||+||++|.|++|
T Consensus 1 mkt~~~~~~~---~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 77 (142)
T 3r8s_J 1 MKTFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHH 77 (142)
T ss_dssp CCCCCCCTTT---CCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEE
T ss_pred CCcccCChhh---ccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEe
Confidence 6799999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHhhcChhHHHHHHHHccCCCCcchHHHhcCCeeecCCCCCCCCCCCeeecc
Q 030391 105 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 169 (178)
Q Consensus 105 tgypGglk~~t~~~~~~r~P~~Il~~aVrgMLPkn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~ 169 (178)
||||||+++.+++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+|+++++
T Consensus 78 tgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~aq~p~~l~~ 142 (142)
T 3r8s_J 78 TGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp CSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCGGGCCEECCC
T ss_pred cCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998864
No 2
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=1.9e-66 Score=411.18 Aligned_cols=140 Identities=53% Similarity=0.942 Sum_probs=136.8
Q ss_pred hcccccCCCCCccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 030391 25 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 104 (178)
Q Consensus 25 ~~t~~~k~~~~~~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~h 104 (178)
|+||++| + ++|+|+||||+|++||||||+||++|+|||||+||||+||||+|||||||+|.+||+||++|.|++|
T Consensus 1 m~t~~~~--~---~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 75 (140)
T 3v2d_N 1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 75 (140)
T ss_dssp CCCCCCC--C---CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEE
T ss_pred Ccccccc--c---ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEe
Confidence 5788988 5 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHhhcChhHHHHHHHHccCCCCcchHHHhcCCeeecCCCCCCCCCCCeeecc
Q 030391 105 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 169 (178)
Q Consensus 105 tgypGglk~~t~~~~~~r~P~~Il~~aVrgMLPkn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~ 169 (178)
||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+|+++++
T Consensus 76 tgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~aq~p~~~~~ 140 (140)
T 3v2d_N 76 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp CSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCGGGCCEEECC
T ss_pred cccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 3
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.4e-65 Score=409.41 Aligned_cols=147 Identities=27% Similarity=0.502 Sum_probs=140.5
Q ss_pred hcccccCCCCCccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 030391 25 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 104 (178)
Q Consensus 25 ~~t~~~k~~~~~~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~h 104 (178)
|.|+++++++-.+++|+|+||||+|++||||||+||++|+|||||+||||+||||+|||||||+|.+||+||++|.|++|
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence 56888988883334999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHhhcChhHHHHHHHHccCCCCcchHHHhcCCeeecCCCCCCCCCCCeeecccc
Q 030391 105 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 171 (178)
Q Consensus 105 tgypGglk~~t~~~~~~r~P~~Il~~aVrgMLPkn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~ 171 (178)
||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+|+++++++
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~~ 147 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQ 147 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998753
No 4
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=1.6e-65 Score=414.19 Aligned_cols=152 Identities=50% Similarity=0.886 Sum_probs=135.3
Q ss_pred CCCccchhhhhhhcccccCCCCCccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeec
Q 030391 13 PPLTCRFLWDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVS 92 (178)
Q Consensus 13 ~~~~~~~~~~~~~~t~~~k~~~~~~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~t 92 (178)
|+..-+.-+--.|+||++| + ++|+|+||||+|++||||||+||++|+|||||+||||+||||+|||||||+|.+|
T Consensus 12 ~~~~~~~~~~~~mkt~~~k--~---~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iT 86 (163)
T 3f1f_N 12 PPIPRQEQRRALVKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVT 86 (163)
T ss_dssp -------------CCCCCC--C---CCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCS
T ss_pred CCCcHHHHHHhcCcccccc--c---ccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccC
Confidence 3333333333348999998 6 8999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeeeeccCCCCCCCCCCHHHHhhcChhHHHHHHHHccCCCCcchHHHhcCCeeecCCCCCCCCCCCeeecc
Q 030391 93 GKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 169 (178)
Q Consensus 93 G~k~~~K~Y~~htgypGglk~~t~~~~~~r~P~~Il~~aVrgMLPkn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~ 169 (178)
|+||++|.|++|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+|+++++
T Consensus 87 G~K~~~K~yy~htgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~aQ~P~~l~~ 163 (163)
T 3f1f_N 87 GKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp TTHHHHCEECCBCSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred CchhhheeeEEecCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998864
No 5
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.6e-65 Score=435.73 Aligned_cols=158 Identities=84% Similarity=1.339 Sum_probs=124.7
Q ss_pred hhhhhcccccCCCCCccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCcccccee
Q 030391 21 WDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI 100 (178)
Q Consensus 21 ~~~~~~t~~~k~~~~~~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~ 100 (178)
-|++|+||++|+++-++++|+||||||+|++||||||+||++|+|||||+||||+||||+|||||||+|.|||+||++|.
T Consensus 93 ~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~ 172 (250)
T 3bbo_L 93 PDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKL 172 (250)
T ss_dssp -------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCC
T ss_pred CCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceE
Confidence 46689999999987233599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCCCHHHHhhcChhHHHHHHHHccCCCCcchHHHhcCCeeecCCCCCCCCCCCeeeccccceeeccC
Q 030391 101 YRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 178 (178)
Q Consensus 101 Y~~htgypGglk~~t~~~~~~r~P~~Il~~aVrgMLPkn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~~~~~~~ 178 (178)
|++|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+|+++++++|++++++
T Consensus 173 Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~~~ 250 (250)
T 3bbo_L 173 YRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250 (250)
T ss_dssp CBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSCC--------------
T ss_pred EEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=1.2e-64 Score=412.74 Aligned_cols=152 Identities=47% Similarity=0.759 Sum_probs=137.4
Q ss_pred CccchhhhhhhcccccCCCCCccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCc
Q 030391 15 LTCRFLWDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGK 94 (178)
Q Consensus 15 ~~~~~~~~~~~~t~~~k~~~~~~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~ 94 (178)
..|+.....+|+||++|+ ++|+|+||||+|++||||||+||++|+|||||+||||+||||+|||||||+|.+||+
T Consensus 19 ~~~~~~~~~~m~T~~~k~-----~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~ 93 (174)
T 2zjr_G 19 AKSPLLRSFKVKTYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGK 93 (174)
T ss_dssp -----------CCCCCCC-----SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSC
T ss_pred ccccccccceeeeeccCc-----ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccc
Confidence 344455666789999887 569999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeccCCCCCCCCCCHHHHhhcChhHHHHHHHHccCCCCcchHHHhcCCeeecCCCCCCCCCCCeeecccc
Q 030391 95 KRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 171 (178)
Q Consensus 95 k~~~K~Y~~htgypGglk~~t~~~~~~r~P~~Il~~aVrgMLPkn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~ 171 (178)
||++|.|++|||||||+++++++++++++|++||++||+||||||++|+.+|+||+||+|++|||++|+|++++++.
T Consensus 94 K~~~K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aqkp~~l~~~~ 170 (174)
T 2zjr_G 94 KLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQP 170 (174)
T ss_dssp SSSSCEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCCCC
T ss_pred hhhceEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhccCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=3.7e-51 Score=324.26 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=104.5
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCCC-CCHHHHh
Q 030391 42 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE-ETFDQLQ 120 (178)
Q Consensus 42 W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~htgypGglk~-~t~~~~~ 120 (178)
|+||||+|++||||||+||++|+ |||+|||||||+|.+||+|+++|.||+||+||||++. .+ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999777 67 9999
Q ss_pred hcChhHHHHHHHHccCC-CCcchHHHhcCCeeecCCCCCCCCCCCeeeccccc
Q 030391 121 HRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 172 (178)
Q Consensus 121 ~r~P~~Il~~aVrgMLP-kn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~ 172 (178)
+++|++||++||+|||| ||++|+++|+||+||+|+||||++|+|++++.+++
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~ 120 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG
T ss_pred ccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh
Confidence 99999999999999999 89999999999999999999999999999999886
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=2.2e-49 Score=328.78 Aligned_cols=127 Identities=30% Similarity=0.460 Sum_probs=122.7
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCCCCCHHH
Q 030391 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 118 (178)
Q Consensus 39 ~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~htgypGglk~~t~~~ 118 (178)
+.+|+||||+|++||||||.||+.|+ .||+|||||||+|.|||+|+++|.|++|||||||+++.++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 36899999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HhhcChhHHHHHHHHccCC-CCcchHHHhcCCeeecCCCCCCCCCCCeeeccccceeecc
Q 030391 119 LQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQ 177 (178)
Q Consensus 119 ~~~r~P~~Il~~aVrgMLP-kn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~~~~~~ 177 (178)
+++++|++||++||+|||| ||++|+.+|++|+||+|+||||++|+++++|.++++.+++
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lk 130 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLK 130 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSC
T ss_pred HhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccC
Confidence 9999999999999999999 7999999999999999999999999999999999887664
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=6.7e-48 Score=306.60 Aligned_cols=116 Identities=30% Similarity=0.388 Sum_probs=111.9
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCCCCCHH
Q 030391 38 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD 117 (178)
Q Consensus 38 ~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~htgypGglk~~t~~ 117 (178)
..++|+||||+|++||||||+||++|+ |||+|||||||+|.+||+|+++|.||+||+|||| +++
T Consensus 5 ~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~ 68 (145)
T 1vq8_J 5 EFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNG 68 (145)
T ss_dssp CCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHH
Confidence 447899999999999999999999999 9999999999999999999999999999999998 789
Q ss_pred HHhhcChhHHHHHHHHccCC-CCcchHHHhcCCeeecCCCCCCCCCCCeeeccccc
Q 030391 118 QLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 172 (178)
Q Consensus 118 ~~~~r~P~~Il~~aVrgMLP-kn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~ 172 (178)
++++++|++||++||+|||| ||++|+++|+||+||+|+||| |+|+++|.+++
T Consensus 69 ~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~ 121 (145)
T 1vq8_J 69 YFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL 121 (145)
T ss_dssp CCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC
T ss_pred HHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh
Confidence 99999999999999999999 999999999999999999999 89999999875
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=4.5e-47 Score=314.84 Aligned_cols=126 Identities=26% Similarity=0.321 Sum_probs=121.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCCCCCHHHH
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQL 119 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~htgypGglk~~t~~~~ 119 (178)
++|+||||+|++||||||.||++|+ |||+|||||||+|.|||+||++|.||+|+.++++..+.+++++
T Consensus 3 ~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~ 70 (198)
T 4a17_I 3 DKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQ 70 (198)
T ss_dssp SSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCC
T ss_pred ccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccc
Confidence 6899999999999999999999998 9999999999999999999999999999888999988889999
Q ss_pred hhcChhHHHHHHHHccCCC-CcchHHHhcCCeeecCCCCCCCCCCCeeeccccceeecc
Q 030391 120 QHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQ 177 (178)
Q Consensus 120 ~~r~P~~Il~~aVrgMLPk-n~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~~~~~~ 177 (178)
++++|++||++||+||||+ |++|+.+|+||+||+|+||||++|+++++|.++++.+++
T Consensus 71 ~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~ 129 (198)
T 4a17_I 71 HFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLR 129 (198)
T ss_dssp CCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSC
T ss_pred cccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcC
Confidence 9999999999999999995 999999999999999999999999999999999877663
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=9.1e-46 Score=308.52 Aligned_cols=127 Identities=28% Similarity=0.402 Sum_probs=116.1
Q ss_pred cccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCCC--C
Q 030391 37 HSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE--E 114 (178)
Q Consensus 37 ~~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~htgypGglk~--~ 114 (178)
.++|+|+||||+|++||||||.||++|+ |||+|||||||+|.|||+||++|.||+| |.+.... .
T Consensus 6 ~f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np 71 (206)
T 3iz5_K 6 GVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKP 71 (206)
T ss_dssp SCCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCS
T ss_pred ccceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCC
Confidence 4899999999999999999999999998 9999999999999999999999999887 4443322 2
Q ss_pred CHHHHhhcChhHHHHHHHHccCCC-CcchHHHhcCCeeecCCCCCCCCCCCeeeccccceeecc
Q 030391 115 TFDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQ 177 (178)
Q Consensus 115 t~~~~~~r~P~~Il~~aVrgMLPk-n~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~~~~~~ 177 (178)
+++++++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+++++|.++++.+++
T Consensus 72 ~~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~ 135 (206)
T 3iz5_K 72 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQ 135 (206)
T ss_dssp SSCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCS
T ss_pred cccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcC
Confidence 468999999999999999999997 899999999999999999999999999999998887664
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.6e-45 Score=302.81 Aligned_cols=118 Identities=30% Similarity=0.472 Sum_probs=106.9
Q ss_pred ccceEEEEeCCCCCchhhHHHHHH-HHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeee-ecc-------CCC
Q 030391 38 SDKTWYVVDATDKILGRLASTIAI-HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHS-------GRP 108 (178)
Q Consensus 38 ~~r~W~vIDA~g~~LGRLAs~VAk-~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~-~ht-------gyp 108 (178)
.+++|+||||+|++||||||.||+ +|+ ||+|||||||+|.|||++|++|.|| +|+ ++|
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~ 68 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR 68 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence 458999999999999999999999 775 6899999999999999999999999 998 788
Q ss_pred CCCCCCCHHHHhhcChhHHHHHHHHccCCC-CcchHHHhcCCeeecCCCCCCCCCCCeeeccccceeec
Q 030391 109 GGMKEETFDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQK 176 (178)
Q Consensus 109 Gglk~~t~~~~~~r~P~~Il~~aVrgMLPk-n~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~~~~~ 176 (178)
|+ +++++|++||++||+||||+ |++|+.+|++|+||+|+||||++|+|+++|.++++.++
T Consensus 69 G~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~ 129 (203)
T 2zkr_j 69 GP--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL 129 (203)
T ss_dssp CC--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSS
T ss_pred Cc--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhc
Confidence 76 78999999999999999998 89999999999999999999999999999999987655
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=1.3e-44 Score=295.85 Aligned_cols=123 Identities=28% Similarity=0.436 Sum_probs=113.1
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCCCCCHHHHhhc
Q 030391 43 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR 122 (178)
Q Consensus 43 ~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~~tG~k~~~K~Y~~htgypGglk~~t~~~~~~r 122 (178)
+||||+|++||||||+||++|+ |||+|||||||+|.|||+||++|+||+|....+...+.+.++++++
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r 68 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR 68 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence 5899999999999999999998 9999999999999999999999999998444444445567999999
Q ss_pred ChhHHHHHHHHccCC-CCcchHHHhcCCeeecCCCCCCCCCCCeeeccccceeecc
Q 030391 123 IPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQ 177 (178)
Q Consensus 123 ~P~~Il~~aVrgMLP-kn~lgr~~l~rLkvy~G~~hp~~~qkp~~~~~~~~~~~~~ 177 (178)
+|++||++||+|||| ||++|+.+|+||+||+|+||||++|+++++|.++++.+++
T Consensus 69 ~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLk 124 (178)
T 3jyw_M 69 APSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLK 124 (178)
T ss_dssp STTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSS
T ss_pred CHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccC
Confidence 999999999999999 5999999999999999999999999999999999877664
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=46.04 E-value=11 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.|+=+-| -|++|..++++|. .||.|+|-
T Consensus 52 t~fi~vv~----wgk~AE~~~~yl~------------KG~~V~Ve 80 (108)
T 3koj_A 52 PARLKVVG----WGAVAQELQDRCR------------LNDEVVLE 80 (108)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhCC------------CCCEEEEE
Confidence 46777755 5799999999996 89988774
No 15
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=35.21 E-value=44 Score=26.07 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=28.3
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 030391 38 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 85 (178)
Q Consensus 38 ~~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 85 (178)
....|+-|=+-| |.||..|.++|. .|+.|+|.-
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVeG 115 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVTG 115 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEEE
Confidence 567899998877 899999999996 999988753
No 16
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=30.57 E-value=27 Score=25.94 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 85 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 85 (178)
-.|+=|-| -|++|..++++|. .||.|+|.=
T Consensus 62 t~w~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (128)
T 4dam_A 62 TNFFTVWA----NRQLATNASGSLA------------VGDPVVVQG 91 (128)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred cEEEEEEE----EcHHHHHHHHhcC------------CCCEEEEEE
Confidence 46777755 5789999999996 899988753
No 17
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=28.66 E-value=32 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 39 ~r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
.-.|+=+-| .|++|..++++|. .||.|.|.
T Consensus 48 ~t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 77 (116)
T 3vdy_A 48 EADYVNCTL----WRKTAENTALYCQ------------KGSLVGVS 77 (116)
T ss_dssp CEEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred ccEEEEEEE----ECHHHHHHHHhCC------------CCCEEEEE
Confidence 346755544 5889999999986 78888775
No 18
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=27.19 E-value=25 Score=26.52 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=11.8
Q ss_pred ccceEEEEeCCCCC
Q 030391 38 SDKTWYVVDATDKI 51 (178)
Q Consensus 38 ~~r~W~vIDA~g~~ 51 (178)
..|.|.|.||+|++
T Consensus 48 ~sRhW~Itd~~g~~ 61 (127)
T 2f1e_A 48 VARHWQITDGNGRT 61 (127)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EeceEEEEeCCCCE
Confidence 55999999999874
No 19
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=26.14 E-value=27 Score=26.29 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.8
Q ss_pred ccceEEEEeCCCCC
Q 030391 38 SDKTWYVVDATDKI 51 (178)
Q Consensus 38 ~~r~W~vIDA~g~~ 51 (178)
..|.|.|.||+|++
T Consensus 47 ~sRhW~Itd~~g~~ 60 (126)
T 1xvs_A 47 MSRRWLITDADGKQ 60 (126)
T ss_dssp EEEEEEEEETTCCE
T ss_pred EecEEEEEeCCCCE
Confidence 56999999999874
No 20
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=25.34 E-value=37 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.1
Q ss_pred cceEEEEeCCCCCch-hhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 39 DKTWYVVDATDKILG-RLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 39 ~r~W~vIDA~g~~LG-RLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
.-.|+=|-| .| ++|..++++|. .||.|.|.
T Consensus 52 ~t~~~~v~~----wg~~~Ae~~~~~l~------------KG~~V~V~ 82 (124)
T 3ulp_A 52 KTDWHRIVV----YDQNIVDLIDKYLR------------KGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEE----CCHHHHHHHHHHCC------------TTCEEEEE
T ss_pred ccEEEEEEE----EEchHHHHHHhhcC------------CCCEEEEE
Confidence 346766655 56 89999999996 89988875
No 21
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=25.28 E-value=39 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=20.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.|+=|-| .|++|..++++|. .||.|.|.
T Consensus 48 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 76 (134)
T 2vw9_A 48 VCFIDARL----FGRTAEIANQYLS------------KGSSVLIE 76 (134)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EcHHHHHHHHhCC------------CCCEEEEE
Confidence 34665544 5789999999986 67776664
No 22
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=24.59 E-value=29 Score=26.43 Aligned_cols=14 Identities=29% Similarity=0.703 Sum_probs=11.8
Q ss_pred ccceEEEEeCCCCC
Q 030391 38 SDKTWYVVDATDKI 51 (178)
Q Consensus 38 ~~r~W~vIDA~g~~ 51 (178)
..|.|.|.||+|++
T Consensus 47 ~sRhW~Itd~~g~~ 60 (134)
T 1tza_A 47 ETRHWIITDANGKT 60 (134)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EecEEEEEeCCCCE
Confidence 56999999999874
No 23
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=23.91 E-value=46 Score=25.44 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.|+=|=| .|++|..++++|. .|+.|.|.
T Consensus 62 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 90 (153)
T 1z9f_A 62 TDFFRIVT----FGRLAEFARTYLT------------KGRLVLVE 90 (153)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEE----ECHHHHHHHhhCC------------CCCEEEEE
Confidence 35766654 5789999999986 89988875
No 24
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=23.21 E-value=43 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.||=|-+ -|++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 80 (168)
T 3afp_A 52 ALFLRCNI----WREAAENVAESLT------------RGARVIVT 80 (168)
T ss_dssp CEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhCC------------CCCEEEEE
Confidence 35766654 4789999999986 78888875
No 25
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=22.60 E-value=31 Score=26.53 Aligned_cols=14 Identities=14% Similarity=0.745 Sum_probs=11.7
Q ss_pred ccceEEEEeCCCCC
Q 030391 38 SDKTWYVVDATDKI 51 (178)
Q Consensus 38 ~~r~W~vIDA~g~~ 51 (178)
..|.|.|.||+|++
T Consensus 52 ~sRhW~ItD~~G~~ 65 (139)
T 1xq4_A 52 ISRHWIITDGEERV 65 (139)
T ss_dssp EEEEEEEECTTSCE
T ss_pred EecEEEEEeCCCCE
Confidence 45899999999874
No 26
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=22.15 E-value=47 Score=26.05 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.||=|=| .|++|..++++|. .||.|+|.
T Consensus 53 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 81 (178)
T 1eqq_A 53 TEWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 81 (178)
T ss_dssp EEEEEEEE----CHHHHHHHHHHCC------------TTCEEEEC
T ss_pred cEEEEEEE----ccHHHHHHHHhcC------------CCCEEEEE
Confidence 35766644 5789999999986 78777763
No 27
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=21.67 E-value=55 Score=24.56 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.||=|-| .|++|..++++|. .||.|.|.
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 80 (145)
T 1qvc_A 52 TEWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 80 (145)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhcC------------CCCEEEEE
Confidence 45776655 5679999999986 78777764
No 28
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=20.93 E-value=52 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 030391 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 84 (178)
Q Consensus 40 r~W~vIDA~g~~LGRLAs~VAk~L~GKhKp~ytP~~d~Gd~VVVI 84 (178)
-.||=|=| .|++|..++++|. .|+.|+|.
T Consensus 55 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 83 (158)
T 3tqy_A 55 TEWHRIAF----FNRLAEIVGEYLR------------KGSKIYIE 83 (158)
T ss_dssp EEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEE----EhHHHHHHHhhcC------------CCCEEEEE
Confidence 45655544 6789999999986 78877764
Done!