RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 030391
         (178 letters)



>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
          Length = 250

 Score =  254 bits (650), Expect = 9e-87
 Identities = 132/157 (84%), Positives = 146/157 (92%)

Query: 22  DIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYV 81
           DIWN TWYPK+ADH  +DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+V
Sbjct: 94  DIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFV 153

Query: 82  IVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 141
           IVVNA+KVAVSGKKRTQK+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGRL
Sbjct: 154 IVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRL 213

Query: 142 GRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 178
           GR LF HLKVYKG  HPH+AQQPI+LP+RDKRI+ ++
Sbjct: 214 GRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250


>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA,
           transfer RNA, 23S ribosomal subunit, ribosome recycling
           factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
           1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H
           1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J
           2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
          Length = 142

 Score =  240 bits (615), Expect = 6e-83
 Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 3/143 (2%)

Query: 27  TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 86
           T+  K        + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA
Sbjct: 3   TFTAKPETV---KRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNA 59

Query: 87  EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 146
           +KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG LGR +F
Sbjct: 60  DKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMF 119

Query: 147 THLKVYKGPNHPHEAQQPIELPI 169
             LKVY G  H H AQQP  L I
Sbjct: 120 RKLKVYAGNEHNHAAQQPQVLDI 142


>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
           {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
          Length = 163

 Score =  239 bits (612), Expect = 3e-82
 Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 5/159 (3%)

Query: 11  RHPPLTCRFLWDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLAT 70
           R PP+  +        T+ PK  +       W ++DA  K LGRLA+ IA  +RGK+   
Sbjct: 10  RGPPIPRQEQRRALVKTYVPKQVE-----PRWVLIDAEGKTLGRLATKIATLLRGKHRPD 64

Query: 71  YTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEH 130
           +TP+V MG +V+VVNA+K+ V+GKK  QKIY R+SG PGG+K+   +++    PER++EH
Sbjct: 65  WTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEH 124

Query: 131 AVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 169
           AV+GMLPKG LGR LF  LKVY GP+HPH+AQ+P +L +
Sbjct: 125 AVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163


>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA,
           protein Y, stress RES stationary phase, ribosome
           hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
           2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N
           2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N
           2wro_N 2wrr_N 2x9s_N 2x9u_N ...
          Length = 140

 Score =  237 bits (606), Expect = 1e-81
 Identities = 74/143 (51%), Positives = 102/143 (71%), Gaps = 5/143 (3%)

Query: 27  TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 86
           T+ PK  +       W ++DA  K LGRLA+ IA  +RGK+   +TP+V MG +V+VVNA
Sbjct: 3   TYVPKQVE-----PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNA 57

Query: 87  EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 146
           +K+ V+GKK  QKIY R+SG PGG+K+   +++    PER++EHAV+GMLPKG LGR LF
Sbjct: 58  DKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLF 117

Query: 147 THLKVYKGPNHPHEAQQPIELPI 169
             LKVY GP+HPH+AQ+P +L +
Sbjct: 118 KRLKVYAGPDHPHQAQRPEKLEV 140


>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit,
           ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H*
           1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G*
           3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
          Length = 174

 Score =  234 bits (599), Expect = 4e-80
 Identities = 67/133 (50%), Positives = 91/133 (68%)

Query: 39  DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
           ++ W VVDA+   LGRLA+ IA  IRGK+   +TP++  G +V+V+NA +VA++GKK   
Sbjct: 38  EQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 97

Query: 99  KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
           K+Y R++G  GG+K ET  +   + PER+IEHAV GMLPKGR GR + T LKVY G  HP
Sbjct: 98  KVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHP 157

Query: 159 HEAQQPIELPIRD 171
           H AQ+P  L  + 
Sbjct: 158 HSAQKPQVLKTQP 170


>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial;
           mitochondrial ribosome, large ribosomal subunit,
           ribosomal R ribosome; 12.10A {Bos taurus}
          Length = 148

 Score =  229 bits (585), Expect = 3e-78
 Identities = 40/144 (27%), Positives = 71/144 (49%)

Query: 27  TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 86
           ++           + WY++D   +  G+LA+  +I ++G +   Y    D G +V+++N 
Sbjct: 3   SFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNT 62

Query: 87  EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 146
             +A SG K  QK+Y  H+G PGG ++ T  QL  R P  I++ A+ GMLPK    R + 
Sbjct: 63  RHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMM 122

Query: 147 THLKVYKGPNHPHEAQQPIELPIR 170
             L ++     P +  + +   + 
Sbjct: 123 ERLHLFPDEYIPEDILKNLVEELP 146


>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly,
           ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
          Length = 142

 Score =  171 bits (435), Expect = 1e-55
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 43  YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR 102
            +++A   ILGRLAS +A  +              G  V++VNAEK  ++G +       
Sbjct: 2   RIINADGLILGRLASRVAKMLLE------------GEEVVIVNAEKAVITGNREVIFSKY 49

Query: 103 RHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEA 161
           +       +          +  + I+   +RGMLP K   GR+ F  LKVY G     + 
Sbjct: 50  KQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109

Query: 162 QQPIELPIRDKRIQKQR 178
           +Q   +         + 
Sbjct: 110 KQLETIVEAHVSRLSRP 126


>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex,
           RNA-RNA complex, PROT complex, peptidyl transferase
           reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
           {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M
           1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I*
           1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K*
           1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
          Length = 145

 Score =  171 bits (435), Expect = 1e-55
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 38  SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
                 +VDA D I+GR+AS +A                 G  V VVNAE+  ++G++  
Sbjct: 5   EFDADVIVDARDCIMGRVASQVAEQ------------ALDGETVAVVNAERAVITGREEQ 52

Query: 98  QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPN 156
                      G            + P+ I +  +RGMLP K + GRE F  ++VY G  
Sbjct: 53  IVEKYEKRVDIGNDNGY----FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108

Query: 157 HPHEAQQPIELPIRDKRIQK 176
           +  + +      +      K
Sbjct: 109 YDEDGEVLDGTSLDRLSNIK 128


>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
           flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
           1s1i_M
          Length = 178

 Score =  147 bits (372), Expect = 1e-45
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 44  VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
           V+D    ++GRLAS +A  +              G  ++VV AE++ +SG+    K+   
Sbjct: 2   VIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYH 49

Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
              R      +T      R P RI   A+RGM+  K   G+     LKV++G   P++ +
Sbjct: 50  DFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKK 109

Query: 163 QPIELP--IRDKRIQKQR 178
           + + +P  +R  R++  R
Sbjct: 110 KRVVVPQALRVLRLKPGR 127


>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
           modeling,de novo modeling,ribos proteins,novel ribosomal
           proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
           3o58_P 3o5h_P 3u5e_O 3u5i_O
          Length = 199

 Score =  145 bits (368), Expect = 9e-45
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 38  SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
           S +   V+D    ++GRLAS +A  +              G  ++VV AE++ +SG+   
Sbjct: 2   SVEPVVVIDGKGHLVGRLASVVAKQLLN------------GQKIVVVRAEELNISGEFFR 49

Query: 98  QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPN 156
            K+      R      +T      R P RI   A+RGM+  K   G+     LKV++G  
Sbjct: 50  NKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIP 109

Query: 157 HPHEAQQPIELP 168
            P++ ++ + +P
Sbjct: 110 PPYDKKKRVVVP 121


>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
           modeling,de novo modeling,ribos proteins,novel ribosomal
           proteins, ribosome; 5.50A {Triticum aestivum} PDB:
           3izr_K
          Length = 206

 Score =  145 bits (368), Expect = 1e-44
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 39  DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
                VVDA   +LGRLAS +A  +              G  V+VV  E++ +SG    Q
Sbjct: 8   CAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQ 55

Query: 99  KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNH 157
           K+      R     + +   +  R P +I+   +RGM+P K   G      LK Y+G   
Sbjct: 56  KMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPP 115

Query: 158 PHEAQQPIELP 168
           P++  + + +P
Sbjct: 116 PYDRTKRMVIP 126


>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
           eukaryotic initiation factor 60S, translation, large
           ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
           4a1a_I 4a1c_I 4a1e_I
          Length = 198

 Score =  145 bits (367), Expect = 1e-44
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 39  DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
                V+DA   +LGRLAS +A  +              G  ++VV  E + +SG     
Sbjct: 2   FDKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRN 49

Query: 99  KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNH 157
           ++                     R P RI   AVRGMLP K   G      LK+++G   
Sbjct: 50  RVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPT 109

Query: 158 PHEAQQPIELP 168
           P++  +   + 
Sbjct: 110 PYDRVKKQVVV 120


>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 203

 Score =  137 bits (346), Expect = 2e-41
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 13/138 (9%)

Query: 38  SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
           ++    V+D    +LGRLA+ +A  +             +G  V+VV  E + +SG    
Sbjct: 2   AEVQVLVLDGRGHLLGRLAAIVAKQVL------------LGRKVVVVRCEGINISGNFYR 49

Query: 98  QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPN 156
            K+      R       +      R P RI    VRGMLP K + G+     LKV+ G  
Sbjct: 50  NKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 109

Query: 157 HPHEAQQPIELPIRDKRI 174
            P++ ++ + +P   K +
Sbjct: 110 PPYDKKKRMVVPAALKVV 127


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 36/164 (21%), Positives = 48/164 (29%), Gaps = 55/164 (33%)

Query: 6   VLLTPRHPPLTCRFLWDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRL--------AS 57
           +  + R    + RFL         P A+   HS     +V A+D I   L        A 
Sbjct: 407 IPFSERKLKFSNRFL---------PVAS-PFHSH---LLVPASDLINKDLVKNNVSFNAK 453

Query: 58  TIAI---HIR-GKNLATYTPS-----VDMGAYVIV---VNAEKVAVSGKKRTQKIYRRHS 105
            I I       G +L   + S     VD     I+   V  E                H 
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDC----IIRLPVKWETTTQFKA--------THI 501

Query: 106 ---GRPGGMKEETFDQLQHRIPE----RIIEHAVRGMLPKGRLG 142
              G PGG        L HR  +    R+I      + P    G
Sbjct: 502 LDFG-PGGAS--GLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542



 Score = 28.9 bits (64), Expect = 1.3
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 21/84 (25%)

Query: 62  HIRGKNLATYTPSVDMGAYVIVVNAEK--VAVSGKKRT----QKIYRRHSGRPGGMKEET 115
           ++   N  ++ P+      + +VN  K  V VSG  ++        R+     G      
Sbjct: 352 YVNKTN--SHLPA-GKQVEISLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSG------ 401

Query: 116 FDQLQHRIP--ERIIEHAVRGMLP 137
            DQ   RIP  ER ++ + R  LP
Sbjct: 402 LDQ--SRIPFSERKLKFSNRF-LP 422



 Score = 26.2 bits (57), Expect = 7.5
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 51/198 (25%)

Query: 1   MGFVGVLLTPRHPPLTCRFLWDIWN--NTWYPKAADHRHSDKTWYVV----DATDKILGR 54
           +G+V  L+ P       + L          Y +  D  H+     +        D  L +
Sbjct: 65  LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHA-----LAAKLLQENDTTLVK 118

Query: 55  LASTI-----AIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPG 109
               I     A  +  +     + S        +  A      G  +   I+    G  G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNS-------ALFRA---VGEGNAQLVAIF----G--G 162

Query: 110 -GMKEETFDQLQHR------IPERIIEHAVRGMLPKGRLGRE---LFTH-LKVYK----- 153
            G  ++ F++L+        +   +I+ +   +    R   +   +FT  L + +     
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222

Query: 154 --GPNHPHEAQQPIELPI 169
              P+  +    PI  P+
Sbjct: 223 SNTPDKDYLLSIPISCPL 240


>2v9v_A Selenocysteine-specific elongation factor; transcription, protein
           conformational change, transcription elongation factor
           SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35
           a.4.5.35
          Length = 135

 Score = 26.5 bits (58), Expect = 3.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 101 YRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE 144
           + R+  RPG  +EE   +   R+P R+ +  +     +GRL   
Sbjct: 79  HSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA 122


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 4.4
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)

Query: 143 RELFTHLKVYKGPNHPHEAQQPIELPIR 170
           ++L   LK+Y        A  P  L I+
Sbjct: 23  KKLQASLKLYA----DDSA--P-ALAIK 43


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,947,785
Number of extensions: 177089
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 35
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)