RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030391
(178 letters)
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 157 bits (397), Expect = 2e-50
Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 5/145 (3%)
Query: 27 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 86
T+ PK ++ W VVDA+ LGRLA+ IA IRGK+ +TP++ G +V+V+NA
Sbjct: 2 TYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINA 56
Query: 87 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 146
+VA++GKK K+Y R++G GG+K ET + + PER+IEHAV GMLPKGR GR +
Sbjct: 57 AQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMH 116
Query: 147 THLKVYKGPNHPHEAQQPIELPIRD 171
T LKVY G HPH AQ+P L +
Sbjct: 117 TRLKVYAGETHPHSAQKPQVLKTQP 141
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 148 bits (375), Expect = 3e-47
Identities = 78/141 (55%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 27 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 86
T+ K + WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA
Sbjct: 3 TFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNA 59
Query: 87 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 146
+KVAV+G KRT K+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F
Sbjct: 60 DKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMF 119
Query: 147 THLKVYKGPNHPHEAQQPIEL 167
LKVY G H H AQQP L
Sbjct: 120 RKLKVYAGNEHNHAAQQPQVL 140
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 146 bits (370), Expect = 2e-46
Identities = 71/129 (55%), Positives = 97/129 (75%)
Query: 39 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 98
+ W ++DA K LGRLA+ IA +RGK+ +TP+V MG +V+VVNA+K+ V+GKK Q
Sbjct: 10 EPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQ 69
Query: 99 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 158
KIY R+SG PGG+K+ +++ PER++EHAV+GMLPKG LGR LF LKVY GP+HP
Sbjct: 70 KIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 129
Query: 159 HEAQQPIEL 167
H+AQ+P +L
Sbjct: 130 HQAQRPEKL 138
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 110 bits (276), Expect = 4e-32
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 38 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 97
+VDA D I+GR+AS +A G V VVNAE+ ++G++
Sbjct: 2 EFDADVIVDARDCIMGRVASQVAEQ------------ALDGETVAVVNAERAVITGREEQ 49
Query: 98 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPN 156
G + + P+ I + +RGMLP K + GRE F ++VY G
Sbjct: 50 IVEKYEKRVDIGNDNGYFYPKR----PDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 105
Query: 157 HPHEAQQPIELPIRDKRIQK 176
+ + + + K
Sbjct: 106 YDEDGEVLDGTSLDRLSNIK 125
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 100 bits (251), Expect = 2e-28
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 44 VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 103
+++A ILGRLAS +A + G V++VNAEK ++G + +
Sbjct: 3 IINADGLILGRLASRVAKML------------LEGEEVVIVNAEKAVITGNREVIFSKYK 50
Query: 104 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQ 162
+ + + I+ +RGMLP K GR+ F LKVY G + +
Sbjct: 51 QRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDK 110
Query: 163 QPIELPIRDKRIQKQR 178
Q + +
Sbjct: 111 QLETIVEAHVSRLSRP 126
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 73
Score = 26.7 bits (59), Expect = 0.43
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 98 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE 144
++ + R+ RPG +EE + R+P R+ + + +GRL
Sbjct: 15 EEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA 61
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
subtilis [TaxId: 1423]}
Length = 98
Score = 27.1 bits (60), Expect = 0.49
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 111 MKEETFDQLQHRIPERIIEHAVRGMLPKGRLGR------ELFTHLKVYKGPNHPHEAQQP 164
M ++T +Q + I + P + R EL + G +
Sbjct: 1 MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDD 60
Query: 165 IEL 167
+
Sbjct: 61 KSM 63
>d1bjaa_ a.4.5.9 (A:) Transcription factor MotA, activation domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 95
Score = 25.3 bits (55), Expect = 1.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 40 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTP----SVDMGAYVIVVN 85
K Y++ A++ +L +TI I I K+ T D+G V+ N
Sbjct: 2 KVTYIIKASNDVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSN 51
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 24.3 bits (53), Expect = 5.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 138 KGRLGRELFTHLKVYKGPNHPHEAQQP 164
K R G + HLKV+K P + +
Sbjct: 56 KVRAGDNKYMHLKVFKS--LPGQNEDL 80
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 24.3 bits (53), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 138 KGRLGRELFTHLKVYKGPNHPHEAQQPIEL 167
K +G E F HL+V++ PHE +P+ L
Sbjct: 56 KVHVGDEDFVHLRVFQS--LPHE-NKPLTL 82
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1
(FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 24.4 bits (53), Expect = 6.7
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 1 MGFVGVLLTPRHPPLTCRF---LWDIWNNTWYPKAADHRHSDKTWYV 44
M G L + C+F +++ + + + S + W++
Sbjct: 62 MNGEGYLYSSDVFTPECKFKESVFENYYVIYSSTLYRQQESGRAWFL 108
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol
dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId:
35933]}
Length = 268
Score = 24.3 bits (52), Expect = 8.9
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 108 PGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGR 143
P + + R+ E A + KG L R
Sbjct: 187 PYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLR 222
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 24.4 bits (53), Expect = 8.9
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 15/104 (14%)
Query: 43 YVVDATDKILGRLASTIAIHIRGKNLATYTPSV------DMGAYVIVVNAEKVAVSGKKR 96
Y + K L +A T+ + G+ L + D +A S R
Sbjct: 90 YSIRDEAK-LYAIAKTLGVATEGRGLLAIVGDLAAITLGDFQNQDYDKPCAWLAASLTPR 148
Query: 97 TQKIYRRHSGRPGGMKEETFDQLQHRI-------PERIIEHAVR 133
K P + + R P +I +R
Sbjct: 149 RVKRLGDLGLLPHNIDASVAQTM-SRTHVGCDADPTNLILGGLR 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.437
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 723,731
Number of extensions: 33520
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 18
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)