Query 030393
Match_columns 178
No_of_seqs 106 out of 1190
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 21:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 5E-35 1.7E-39 228.4 15.2 153 25-177 102-260 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.4E-34 4.6E-39 225.3 16.2 151 25-177 110-272 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.8E-34 9.4E-39 223.6 16.5 153 25-177 5-175 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.6E-34 1.9E-38 222.5 13.8 147 30-177 4-166 (303)
5 3fbl_A Putative uncharacterize 43.8 44 0.0015 19.0 4.2 17 65-81 4-20 (82)
6 1g1e_B SIN3A; four-helix bundl 26.0 13 0.00045 22.8 -0.2 29 46-74 15-43 (89)
7 3vjj_A P9-1; 3.00A {Rice black 25.0 60 0.002 24.5 3.2 37 132-172 273-309 (368)
8 1e91_A Paired amphipathic heli 24.9 13 0.00045 22.6 -0.3 28 46-73 12-39 (85)
9 2cr7_A Paired amphipathic heli 22.7 13 0.00043 22.4 -0.7 26 47-72 16-41 (80)
10 2f05_A Paired amphipathic heli 21.9 18 0.0006 23.0 -0.2 28 46-73 12-39 (105)
11 2czy_A Paired amphipathic heli 21.4 14 0.00048 22.0 -0.7 26 47-72 10-35 (77)
12 2a3d_A Protein (de novo three- 21.4 1E+02 0.0035 17.1 2.9 40 46-85 9-48 (73)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5e-35 Score=228.44 Aligned_cols=153 Identities=17% Similarity=0.238 Sum_probs=140.7
Q ss_pred chhHHHHHHHHHHHHhhhhhcchHHHhHHHHhcCCC-----CCCCHHHHHHHHHHhhchhhhcccchHhHHHHhhhhhhH
Q 030393 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHPI-----KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCR 99 (178)
Q Consensus 25 ~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~-----~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 99 (178)
.+....+++|++|++++.++++|+|++|+|+|.+.. .|++..+++++++++||++|||||+.|++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999753 689999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhhhCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC-CCCCCHHHHHHHHHHhhCccccccc
Q 030393 100 FGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP-HFAKGLADGIPKLYASEGIFGYVIC 177 (178)
Q Consensus 100 ~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~iktr~q~~~-~~~~~~~~~~~~i~~~~G~~gl~~~ 177 (178)
|.+||.+++.+.+......+....+++|+++|++++++++|+|+||+|||.+. ..|.++++++++|+++||++||||+
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 99999999988765444556778899999999999999999999999999984 4689999999999999999999985
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.4e-34 Score=225.30 Aligned_cols=151 Identities=17% Similarity=0.298 Sum_probs=136.9
Q ss_pred chhHHHHHHHHHHHHhhhhhcchHHHhHHHHhcCC------CCCCCHHHHHHHHHHhhchhhhcccchHhHHHHhhhhhh
Q 030393 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHP------IKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGC 98 (178)
Q Consensus 25 ~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~------~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~ 98 (178)
..+...+++|++|++++.++++|+|++|+|+|.+. ..|++..+++++++++||++|||||+.|++++.+|..++
T Consensus 110 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 189 (297)
T 1okc_A 110 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHH
Confidence 34577889999999999999999999999999974 357899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhhhhhCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC------CCCCCHHHHHHHHHHhhCcc
Q 030393 99 RFGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP------HFAKGLADGIPKLYASEGIF 172 (178)
Q Consensus 99 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~iktr~q~~~------~~~~~~~~~~~~i~~~~G~~ 172 (178)
+|.+||.+++.+.+. ...+....+++|+++|++++++++|+|+||+|||++. ..|+++++++++|+++||++
T Consensus 190 ~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~ 267 (297)
T 1okc_A 190 YFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPK 267 (297)
T ss_dssp HHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcC
Confidence 999999999977543 3455677899999999999999999999999999874 25899999999999999999
Q ss_pred ccccc
Q 030393 173 GYVIC 177 (178)
Q Consensus 173 gl~~~ 177 (178)
||||+
T Consensus 268 glyrG 272 (297)
T 1okc_A 268 AFFKG 272 (297)
T ss_dssp GGGTT
T ss_pred eEecc
Confidence 99985
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.8e-34 Score=223.55 Aligned_cols=153 Identities=22% Similarity=0.367 Sum_probs=135.7
Q ss_pred chhHHHHHHHHHHHHhhhhhcchHHHhHHHHhcCC--------CCCCCHHHHHHHHHHhhchhhhcccchHhHHHHhhhh
Q 030393 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHP--------IKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQG 96 (178)
Q Consensus 25 ~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~--------~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 96 (178)
.+++..+++|++|++++.++.+|+|++|+|+|.+. ..|++..+++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678899999999999999999999999999974 2588999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHhhhhhCCCC----chHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 030393 97 GCRFGLYEYFKSLYSSVLGDCS----RSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP------HFAKGLADGIPKLY 166 (178)
Q Consensus 97 ~~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~g~~a~~~~~~~~~P~d~iktr~q~~~------~~~~~~~~~~~~i~ 166 (178)
+++|.+||.+++.+....+... .....+++|+++|++++++++|+|+||||+|++. ..|+++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999996543222222 2356899999999999999999999999999973 36899999999999
Q ss_pred HhhCccccccc
Q 030393 167 ASEGIFGYVIC 177 (178)
Q Consensus 167 ~~~G~~gl~~~ 177 (178)
++||++||||+
T Consensus 165 ~~eG~~glyrG 175 (297)
T 1okc_A 165 KSDGLRGLYQG 175 (297)
T ss_dssp HHHCHHHHTTT
T ss_pred HhccHHHhcCC
Confidence 99999999985
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.6e-34 Score=222.49 Aligned_cols=147 Identities=22% Similarity=0.319 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhhhhcchHHHhHHHHhcCCC-----------CCCCHHHHHHHHHHhhchhhhcccchHhHHHHhhhhhh
Q 030393 30 CAIGGMLSAGTAHLAITPLDVVKVNMQVHPI-----------KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGC 98 (178)
Q Consensus 30 ~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~-----------~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~ 98 (178)
.+++|++|++++.++.+|+|++|+|+|.+.. .|++..+++++++++||++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999753 58899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhhhhhCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCC-----CCCCHHHHHHHHHHhhCccc
Q 030393 99 RFGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQPH-----FAKGLADGIPKLYASEGIFG 173 (178)
Q Consensus 99 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~iktr~q~~~~-----~~~~~~~~~~~i~~~~G~~g 173 (178)
+|.+||.+++.+.+.. ...+....+++|+++|+++.++++|+|+||+|+|++.. .|.+.++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999886542 24567789999999999999999999999999999853 68999999999999999999
Q ss_pred cccc
Q 030393 174 YVIC 177 (178)
Q Consensus 174 l~~~ 177 (178)
|||+
T Consensus 163 lyrG 166 (303)
T 2lck_A 163 LWKG 166 (303)
T ss_dssp HHHH
T ss_pred hhCC
Confidence 9985
No 5
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=43.76 E-value=44 Score=18.99 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhchhhh
Q 030393 65 IASCYTNLLKEQGASAF 81 (178)
Q Consensus 65 ~~~~~~~i~~~~G~~gl 81 (178)
..-.++++++++|+..+
T Consensus 4 lrlaikeicktdgipni 20 (82)
T 3fbl_A 4 LRLAIKEICKTDGIPNI 20 (82)
T ss_dssp HHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHccCCCCcc
Confidence 44568899999998654
No 6
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.98 E-value=13 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred chHHHhHHHHhcCCCCCCCHHHHHHHHHH
Q 030393 46 TPLDVVKVNMQVHPIKYSSIASCYTNLLK 74 (178)
Q Consensus 46 ~P~d~ik~~~q~~~~~~~~~~~~~~~i~~ 74 (178)
.=+..||.|.|.++..|+.+..+++..-+
T Consensus 15 ~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 15 NYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 34677999999988888888888876543
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=24.95 E-value=60 Score=24.53 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHhhhccHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCcc
Q 030393 132 VFANVALCPFEAIKVQVQAQPHFAKGLADGIPKLYASEGIF 172 (178)
Q Consensus 132 ~~~~~~~~P~d~iktr~q~~~~~~~~~~~~~~~i~~~~G~~ 172 (178)
.++++=-+|||++|-.++.- -+....+.+.+++||+.
T Consensus 273 qLaTFdnypfdllRfqL~Sl----istp~~I~e~i~K~GLF 309 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL----ISTPALIREKIAKEGLF 309 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC----CCCCHHHHHHHHHSCSE
T ss_pred eeecCCCCCHHHHHHHhhhh----ccChHHHHHHHHhcCce
Confidence 34566779999998877665 34467899999999964
No 8
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=24.93 E-value=13 Score=22.58 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=21.8
Q ss_pred chHHHhHHHHhcCCCCCCCHHHHHHHHH
Q 030393 46 TPLDVVKVNMQVHPIKYSSIASCYTNLL 73 (178)
Q Consensus 46 ~P~d~ik~~~q~~~~~~~~~~~~~~~i~ 73 (178)
.=++.||.|.|.++..|..+..+++..-
T Consensus 12 ~yv~kVK~rF~~~p~~Y~~FL~il~~yk 39 (85)
T 1e91_A 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQ 39 (85)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3467799999998888888888876533
No 9
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=22.66 E-value=13 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=19.1
Q ss_pred hHHHhHHHHhcCCCCCCCHHHHHHHH
Q 030393 47 PLDVVKVNMQVHPIKYSSIASCYTNL 72 (178)
Q Consensus 47 P~d~ik~~~q~~~~~~~~~~~~~~~i 72 (178)
=++.||.|.|.++..|..+.++++..
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~f 41 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEF 41 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHH
Confidence 36778999998777777777766553
No 10
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=21.90 E-value=18 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.0
Q ss_pred chHHHhHHHHhcCCCCCCCHHHHHHHHH
Q 030393 46 TPLDVVKVNMQVHPIKYSSIASCYTNLL 73 (178)
Q Consensus 46 ~P~d~ik~~~q~~~~~~~~~~~~~~~i~ 73 (178)
.=++.||.|.|.++..|..+..+++..-
T Consensus 12 ~YvnkVK~rF~d~p~vY~~FL~IL~~yk 39 (105)
T 2f05_A 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQ 39 (105)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3467899999998888888888886543
No 11
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=21.41 E-value=14 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred hHHHhHHHHhcCCCCCCCHHHHHHHH
Q 030393 47 PLDVVKVNMQVHPIKYSSIASCYTNL 72 (178)
Q Consensus 47 P~d~ik~~~q~~~~~~~~~~~~~~~i 72 (178)
=++.||.|.|.++..|..+...++..
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~ 35 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEF 35 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHH
Confidence 46789999998777777777766653
No 12
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=21.38 E-value=1e+02 Score=17.06 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred chHHHhHHHHhcCCCCCCCHHHHHHHHHHhhchhhhcccc
Q 030393 46 TPLDVVKVNMQVHPIKYSSIASCYTNLLKEQGASAFWRGS 85 (178)
Q Consensus 46 ~P~d~ik~~~q~~~~~~~~~~~~~~~i~~~~G~~glyrG~ 85 (178)
.-+..||+|+|.-...-......-++|..-|.-..-|+|-
T Consensus 9 qrlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3456789999986543333443344444333333345553
Done!