BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030395
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXT|A Chain A, Structure Of Human Mthfs
pdb|3HY3|A Chain A, Structure Of Human Mthfs With 10-Formyltetrahydrofolate
pdb|3HY4|A Chain A, Structure Of Human Mthfs With N5-Iminium Phosphate
pdb|3HY6|A Chain A, Structure Of Human Mthfs With Adp
Length = 203
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E++T ++
Sbjct: 10 KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84 LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
+ I Q R K+ ++PR +++HM M I S I L S NI +P
Sbjct: 68 IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP--- 114
Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFD 167
+G+ RE+ + +DL +PGL FD
Sbjct: 115 -GEGDVREEALSTG-GLDLIFMPGLGFD 140
>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10-
Methenyltetrahydrofolate Synthetase: Northeast
Structural Genomics Consortium Target Qr46
Length = 194
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 26 ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE----APWFKSSQRLCAYISCSALREVDTS 81
+L+S++RK + +L E + + V+ P FK S+++ Y C EVD +
Sbjct: 1 MLKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALY--CPIKGEVDLT 58
Query: 82 KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDA 141
L ++L+ K+L +P+VE + + ++ + S L + I+EP V+
Sbjct: 59 PLFPEVLK----------EKELILPKVE--GNEISLYRVHSPACLGVGAFGIMEP--VEG 104
Query: 142 DGNEREDVMQANEPVDLFLLPGLAFD 167
+ EDV D +PG+AFD
Sbjct: 105 ERVNPEDV-------DFIAVPGVAFD 123
>pdb|2JCB|A Chain A, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
pdb|2JCB|B Chain B, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
Length = 200
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 91 PNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVM 150
P + K K++ VP+ + M IS+ D L MN+ EP P + +
Sbjct: 69 PIIEKAWKEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALTEE------V 122
Query: 151 QANEPVDLFLLPGLAF 166
A+E +DL ++PG+A+
Sbjct: 123 NADE-IDLQIVPGVAY 137
>pdb|3QM3|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
Length = 357
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 89 QIPNADGDTKTRKKLYVPRV 108
QI N +GD K KK Y PRV
Sbjct: 312 QIGNPEGDDKPNKKYYDPRV 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,572,077
Number of Sequences: 62578
Number of extensions: 158691
Number of successful extensions: 245
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)