Query 030395
Match_columns 178
No_of_seqs 249 out of 1072
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02812 5-formyltetrahydrofol 100.0 1.2E-38 2.5E-43 258.0 17.4 149 19-178 2-154 (211)
2 TIGR02727 MTHFS_bact 5,10-meth 100.0 1.3E-36 2.8E-41 240.5 16.1 137 24-178 1-138 (181)
3 PF01812 5-FTHF_cyc-lig: 5-for 100.0 3.1E-37 6.7E-42 244.4 12.0 137 24-178 1-140 (186)
4 PRK10333 5-formyltetrahydrofol 100.0 2.4E-36 5.2E-41 239.5 15.6 130 31-178 2-132 (182)
5 KOG3093 5-formyltetrahydrofola 100.0 3.3E-34 7.1E-39 223.8 14.2 147 18-178 2-151 (200)
6 COG0212 5-formyltetrahydrofola 100.0 8.8E-32 1.9E-36 214.9 16.2 137 21-178 2-140 (191)
7 KOG4410 5-formyltetrahydrofola 97.3 0.00077 1.7E-08 57.0 7.1 131 18-178 28-180 (396)
8 PF03263 Cucumo_2B: Cucumoviru 41.9 1.1E+02 0.0024 21.9 5.7 36 18-53 12-50 (103)
9 KOG4005 Transcription factor X 34.6 54 0.0012 27.4 3.6 32 13-44 57-88 (292)
10 PRK15055 anaerobic sulfite red 25.6 1.6E+02 0.0034 25.8 5.2 41 79-129 9-55 (344)
11 PF03242 LEA_3: Late embryogen 24.6 66 0.0014 22.8 2.2 29 60-88 64-92 (93)
12 PLN02910 polygalacturonate 4-a 24.5 2.5E+02 0.0054 26.9 6.4 35 3-37 117-151 (657)
13 COG2359 SpoVS Stage V sporulat 22.8 60 0.0013 22.3 1.6 14 152-165 54-67 (87)
14 KOG2843 Fumarylacetoacetase [C 21.6 37 0.00081 29.2 0.5 21 155-176 387-407 (420)
15 PHA03325 nuclear-egress-membra 21.3 4.9E+02 0.011 23.3 7.2 76 3-89 10-85 (418)
16 TIGR02910 sulfite_red_A sulfit 21.2 2.1E+02 0.0045 25.0 5.1 41 79-129 9-55 (334)
17 COG1167 ARO8 Transcriptional r 20.4 3.8E+02 0.0082 24.0 6.7 67 27-105 348-415 (459)
No 1
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=1.2e-38 Score=258.03 Aligned_cols=149 Identities=72% Similarity=1.175 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCC--CCChHHHHHHHHhCCCCCCC
Q 030395 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR--EVDTSKLLSQILQIPNADGD 96 (178)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~--Evdt~~li~~~~~~~~~~~~ 96 (178)
.+.+.|++||++++++|++++++++...|..|+++|..++.++++++|++|+|++ + ||||.+|++.+++
T Consensus 2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~~~Evdt~~li~~~~~------- 72 (211)
T PLN02812 2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCA--KLREVDTSKILSEILQ------- 72 (211)
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECC--CCCCcCHHHHHHHHHH-------
Confidence 4667899999999999999999999999999999999999999999999999998 6 9999999999999
Q ss_pred CCCC-cEEEEeeeeCCCCceEEEEeCCC-CCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccc
Q 030395 97 TKTR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG 174 (178)
Q Consensus 97 ~~~g-k~v~lP~v~~~~~~m~f~~~~~~-~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG 174 (178)
.| |+|+||+|...+..|.|+.|.+. ++|..|.|||+||.........+.+.......+|||||||||||++|+|||
T Consensus 73 --~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG 150 (211)
T PLN02812 73 --NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLG 150 (211)
T ss_pred --cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCc
Confidence 89 99999999765446999999986 789999999999975321110000011135678999999999999999999
Q ss_pred cCCC
Q 030395 175 RGGG 178 (178)
Q Consensus 175 ~GgG 178 (178)
||||
T Consensus 151 ~GgG 154 (211)
T PLN02812 151 RGGG 154 (211)
T ss_pred CCCc
Confidence 9999
No 2
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=1.3e-36 Score=240.52 Aligned_cols=137 Identities=31% Similarity=0.496 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 030395 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (178)
Q Consensus 24 K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v 103 (178)
|++||++++++|++++.+++...+..|+++|.+++.++++++|++|+|++ +|+||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v 69 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV 69 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence 67999999999999999999999999999999999999999999999999 79999999999998 89999
Q ss_pred EEeeeeCCC-CceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 104 ~lP~v~~~~-~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
+||+|...+ ..|.|..|...++|..|.|||+||..... .......+|+|||||||||++|+|||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~-------~~~~~~~idlvivP~lafD~~G~RLG~GgG 138 (181)
T TIGR02727 70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDST-------EPVDPDEIDLIIVPGVAFDRRGYRLGYGGG 138 (181)
T ss_pred EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCccc-------CcCCcccCCEEEeCceEEcCCCccccCCcc
Confidence 999997653 23667778877789999999999974310 013456899999999999999999999999
No 3
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=3.1e-37 Score=244.36 Aligned_cols=137 Identities=35% Similarity=0.598 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 030395 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (178)
Q Consensus 24 K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v 103 (178)
|++||++++++|++|+++++...|..|+++|.+++.++++++|++|+|++ +||||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v 69 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV 69 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence 89999999999999999999999999999999999999999999999998 79999999999999 99999
Q ss_pred EEeeeeCCC---CceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 104 ~lP~v~~~~---~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
++|++..+. ..|.|+.+...++|.+|.|||+||..... .......+|+|||||||||++|+|||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgG 140 (186)
T PF01812_consen 70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGG 140 (186)
T ss_dssp EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSST
T ss_pred ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCC
Confidence 999998765 35778889888999999999999986421 111123799999999999999999999999
No 4
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=239.52 Aligned_cols=130 Identities=22% Similarity=0.432 Sum_probs=116.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeeeC
Q 030395 31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED 110 (178)
Q Consensus 31 ~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~ 110 (178)
++++|++++++++...|++|+++|.+++.|+++++|++|+|++ +||||.+||+.+++ .||+|+||+|.+
T Consensus 2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~ 70 (182)
T PRK10333 2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP 70 (182)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence 5788999999999999999999999999999999999999998 79999999999999 899999999975
Q ss_pred C-CCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 111 ~-~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
. ...|.|+.|.+.++|.+|.|||+||..... .......+|+|||||||||++|+|||||||
T Consensus 71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~iDlviVP~laFD~~G~RLG~GgG 132 (182)
T PRK10333 71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR-------DVLPLSRLDVLITPLVAFDEYGQRLGMGGG 132 (182)
T ss_pred CCCCEEEEEECCCCCccccCCCCCCCCCcccc-------ccCCcccCCEEEeCceEECCCCCcccCCcc
Confidence 4 246999999998999999999999975311 112356789999999999999999999999
No 5
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.3e-34 Score=223.79 Aligned_cols=147 Identities=39% Similarity=0.749 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCC
Q 030395 18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDT 97 (178)
Q Consensus 18 ~~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~ 97 (178)
+.+...|+.||+.+++..++|+++.+..+|+.|++++++++.|+++++|++|+||.+ +||+|..||+.+++
T Consensus 2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq-------- 72 (200)
T KOG3093|consen 2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ-------- 72 (200)
T ss_pred chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence 457888999999999999999999999999999999999999999999999999995 59999999999999
Q ss_pred CCCcEEEEeeeeCCCCceEEEEeCCCCC---cccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccc
Q 030395 98 KTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG 174 (178)
Q Consensus 98 ~~gk~v~lP~v~~~~~~m~f~~~~~~~~---l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG 174 (178)
.||.||+|+|...+..|.+.++...+. |..+.|||++|.+.. .+++.......+|||||||||||+.|.|||
T Consensus 73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~----~re~~~~t~~~lDLiivPGvAFd~~g~RlG 147 (200)
T KOG3093|consen 73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGG----PREDALETGHPLDLIIVPGVAFDRKGARLG 147 (200)
T ss_pred -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCC----chhhhccCCCcceEEEecccccchhhhhcc
Confidence 999999999977667899999987654 456789999998642 334433333369999999999999999999
Q ss_pred cCCC
Q 030395 175 RGGG 178 (178)
Q Consensus 175 ~GgG 178 (178)
+|+|
T Consensus 148 hGkG 151 (200)
T KOG3093|consen 148 HGKG 151 (200)
T ss_pred CCcc
Confidence 9998
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=8.8e-32 Score=214.95 Aligned_cols=137 Identities=30% Similarity=0.495 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 030395 21 FQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR 100 (178)
Q Consensus 21 ~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g 100 (178)
.+.|++||+.++++|.++++..+...+..+++++..++.+.++++|++|+|++ +|+||.++++.+|+ +|
T Consensus 2 ~~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~g 70 (191)
T COG0212 2 MATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RG 70 (191)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cC
Confidence 36799999999999999999999999999999999999999999999999999 79999999999999 99
Q ss_pred cEEEEeeeeCCCCceEEEEeCCC--CCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 101 KKLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 101 k~v~lP~v~~~~~~m~f~~~~~~--~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
|+|+||++.+ ..+.|..|.+. ..+..+.|||.||..... . ..+..+|+||||+||||++|+|||||||
T Consensus 71 k~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~-------~-~~~~~iDlvlvP~Vafd~~G~RLG~GgG 140 (191)
T COG0212 71 KRLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGR-------K-IPPPEIDLVLVPLVAFDKQGYRLGYGGG 140 (191)
T ss_pred CEEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCC-------c-cCCCcCCEEEeCceeECCCCccccCCCc
Confidence 9999999985 35889999888 889999999999986421 1 1226789999999999999999999999
No 7
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.00077 Score=56.97 Aligned_cols=131 Identities=20% Similarity=0.286 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCHH---HHH---HHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHH
Q 030395 18 ESIFQQKRILRSQVRKTLKS----MDPS---LRS---HEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87 (178)
Q Consensus 18 ~~~~~~K~~LR~~~~~~R~~----ls~~---~~~---~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~ 87 (178)
+++...|..||.+++....+ +++. .|. ..+...|+.|.++..|+.|+.|-+-..- .+..+-..+
T Consensus 28 qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD~------pl~~~r~L~ 101 (396)
T KOG4410|consen 28 QDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPDR------PLHEFRELA 101 (396)
T ss_pred CCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCCc------hHHHHHHHH
Confidence 45677899999999987654 2221 111 3456778888888899999998865322 244555555
Q ss_pred HhCCCCCCCCCCCcEEEEeeeeCCCCceEEEEeCCCCC-----c-----ccC--cCccCCCCCCCCCCCccccccCCCCC
Q 030395 88 LQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-----L-----IAN--SMNILEPAPVDADGNEREDVMQANEP 155 (178)
Q Consensus 88 ~~~~~~~~~~~~gk~v~lP~v~~~~~~m~f~~~~~~~~-----l-----~~g--~~GI~EP~~~~~~~~~~~~~~~~~~~ 155 (178)
+. ..|.+++|-..... =.|..++...+ + ..| .|+ -|.+- -+--.
T Consensus 102 L~---------~~Ksll~PspRlrt--glf~kv~~~~~ate~i~~~c~tsqgv~ky~--~~IGL-----------Ds~lk 157 (396)
T KOG4410|consen 102 LL---------ADKSLLLPSPRLRT--GLFLKVDVLADATEEIKKECLTSQGVQKYR--SEIGL-----------DSGLK 157 (396)
T ss_pred hh---------cccceecCCchhhc--ceeeeeccCCCCcHHHHHHHHhhhhHHHhC--ccccc-----------ccCce
Confidence 65 67999999875432 23555544211 1 111 232 22211 11225
Q ss_pred ccEEEEccceecCCCCccccCCC
Q 030395 156 VDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 156 iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
+|||+|-.||+++.|+|||.|-|
T Consensus 158 vDlvViGSVavs~~G~RiGkGeG 180 (396)
T KOG4410|consen 158 VDLVVIGSVAVSREGYRIGKGEG 180 (396)
T ss_pred EEEEEEeeEEecccceeeccCCc
Confidence 79999999999999999999977
No 8
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=41.89 E-value=1.1e+02 Score=21.95 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Q 030395 18 ESIFQQKRILRSQVRKTLKS---MDPSLRSHEDNAIQKI 53 (178)
Q Consensus 18 ~~~~~~K~~LR~~~~~~R~~---ls~~~~~~~s~~i~~~ 53 (178)
+.+.+.|+.-|+..++.|+. =|+.++......++..
T Consensus 12 arm~Ekkk~rR~~Hk~NRkeRGhKSPSEr~Rs~lrlf~~ 50 (103)
T PF03263_consen 12 ARMVEKKKQRRRSHKKNRKERGHKSPSERARSELRLFRF 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhcCCCCHHHHHHHHHHHHHh
Confidence 34667788889999988876 4666666555544333
No 9
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.62 E-value=54 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=22.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 030395 13 KEHDLESIFQQKRILRSQVRKTLKSMDPSLRS 44 (178)
Q Consensus 13 ~~~~~~~~~~~K~~LR~~~~~~R~~ls~~~~~ 44 (178)
+...++.+....+.+|++++.+-.+-+..+|+
T Consensus 57 Kr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrK 88 (292)
T KOG4005|consen 57 KRRRLDHLSWEEKVQRRKLKNRVAAQTARDRK 88 (292)
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45566677777888999999887776654433
No 10
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=25.62 E-value=1.6e+02 Score=25.81 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=30.3
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCcEEEEeeeeCCCC------ceEEEEeCCCCCcccC
Q 030395 79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNS------HMRMFHISSIDDLIAN 129 (178)
Q Consensus 79 dt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~~~~------~m~f~~~~~~~~l~~g 129 (178)
++..+++.+.+ + ++|+.|+....++ ...|..|.+.+++.-+
T Consensus 9 ~l~~ll~~L~~---------~-y~v~aP~~~~~~g~~~~td~i~f~~i~~~~el~~~ 55 (344)
T PRK15055 9 EFNLLLKRLKK---------E-YKIYAPKRFEGKGRFSDTDNIRYGEINSIEDIVFD 55 (344)
T ss_pred HHHHHHHHHHh---------C-CEEEeeEEECCCCcccccceEEEEecCChhhcccC
Confidence 46678888765 4 9999999865433 5778888887777655
No 11
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=24.64 E-value=66 Score=22.80 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=22.1
Q ss_pred ccCCCeEEEEecCCCCCCCChHHHHHHHH
Q 030395 60 FKSSQRLCAYISCSALREVDTSKLLSQIL 88 (178)
Q Consensus 60 ~~~a~~I~~Y~~~~~~~Evdt~~li~~~~ 88 (178)
|-..-.=+.|.|-++.+|||...|-+.+|
T Consensus 64 W~pDPvTGyyrPen~~~EiD~AeLR~~lL 92 (93)
T PF03242_consen 64 WMPDPVTGYYRPENHFGEIDAAELRAKLL 92 (93)
T ss_pred cccCCCCccccCCCCCCCCCHHHHHHHHh
Confidence 33334457889988778999999988876
No 12
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=24.46 E-value=2.5e+02 Score=26.86 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCCCCCCCCccccchHHHHHHHHHHHHHHHHHHhc
Q 030395 3 QSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKS 37 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~K~~LR~~~~~~R~~ 37 (178)
|+.+|-...++..+++.+....+.+|++.+..|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (657)
T PLN02910 117 QTDESGIQFPNKLPASPVKLQRQILRQERRDLRTA 151 (657)
T ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777777777888877777754
No 13
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=22.77 E-value=60 Score=22.34 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=10.8
Q ss_pred CCCCccEEEEccce
Q 030395 152 ANEPVDLFLLPGLA 165 (178)
Q Consensus 152 ~~~~iDlvlVP~lA 165 (178)
.++.+||++||+.+
T Consensus 54 apsGidL~~vPaF~ 67 (87)
T COG2359 54 APSGIDLVCVPAFT 67 (87)
T ss_pred CccCCcEEEeeeeE
Confidence 34578999999864
No 14
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=21.63 E-value=37 Score=29.21 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=14.6
Q ss_pred CccEEEEccceecCCCCccccC
Q 030395 155 PVDLFLLPGLAFDRSGRRLGRG 176 (178)
Q Consensus 155 ~iDlvlVP~lAFD~~G~RLG~G 176 (178)
+-|-|++-|. +..+|+|||||
T Consensus 387 DgDEVii~G~-CeknG~RIGFG 407 (420)
T KOG2843|consen 387 DGDEVIIRGH-CEKNGLRIGFG 407 (420)
T ss_pred cCCeEEEEee-ecCCceEEecc
Confidence 3466667665 46788888887
No 15
>PHA03325 nuclear-egress-membrane-like protein; Provisional
Probab=21.27 E-value=4.9e+02 Score=23.29 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=41.7
Q ss_pred CCCCCCCCCccccchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHH
Q 030395 3 QSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~ 82 (178)
-|||+|+...+.++.+....--+.+=+.++..+++ +.++ +.+.++|-..+.-+.+.+.++|+ ...|-+.
T Consensus 10 fs~d~sv~~~~a~~~~~~d~~~~siS~~YK~~~RA---E~kK---rlL~~~LP~~i~sk~~~n~FiFC-----t~~D~~~ 78 (418)
T PHA03325 10 FSNDSSVTRTKAERAEMADNFARSISKAYKGTNRA---EGKK---RLLSNHLPDCICSKRNTNSFIFC-----TSRDYRK 78 (418)
T ss_pred CCCccccccchhhhhhHHHHHHHHHHHHHHHHHhh---hhHH---HHHHhhCCcccccccccceEEEE-----ecchHHH
Confidence 48999999887666544333333344444444333 2222 23344443334445556667776 3667777
Q ss_pred HHHHHHh
Q 030395 83 LLSQILQ 89 (178)
Q Consensus 83 li~~~~~ 89 (178)
+-+.+.+
T Consensus 79 ~~~gI~q 85 (418)
T PHA03325 79 FEQGIAQ 85 (418)
T ss_pred HHHHHHH
Confidence 7666655
No 16
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=21.23 E-value=2.1e+02 Score=24.96 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=29.6
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCcEEEEeeeeC-CC-----CceEEEEeCCCCCcccC
Q 030395 79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVED-KN-----SHMRMFHISSIDDLIAN 129 (178)
Q Consensus 79 dt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~-~~-----~~m~f~~~~~~~~l~~g 129 (178)
++..+++.+.+ + ++|+.|+... ++ ....|..|.+.+++..+
T Consensus 9 ~l~~ll~~L~~---------~-y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~ 55 (334)
T TIGR02910 9 EFNLLLQKLNK---------D-YKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFH 55 (334)
T ss_pred HHHHHHHHHHh---------C-CEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccC
Confidence 46678888765 4 9999999863 21 36778888887777655
No 17
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=20.42 E-value=3.8e+02 Score=24.01 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCC-CeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEE
Q 030395 27 LRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS-QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYV 105 (178)
Q Consensus 27 LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a-~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v~l 105 (178)
.++++++.|..+... +...-+.+.+.+-....|... .-+++.+-++ .-+|...+++.+.+ +|..|+.
T Consensus 348 ~~~hl~~lR~~y~~r-r~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~--~~~~~~~l~~~a~~---------~gv~i~~ 415 (459)
T COG1167 348 YDRHLRRLRREYARR-RDALLEALAEYLPELATWTRPEGGLFLWLELP--EGIDARELLAAALE---------KGVVVTP 415 (459)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCeeeecCCceEEEEEEcC--CCCCHHHHHHHHHH---------CCCEEEc
Confidence 444444444443221 122233344444333344443 3477888887 56899999999998 7776665
Done!