Query 030395
Match_columns 178
No_of_seqs 249 out of 1072
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy3_A 5-formyltetrahydrofolat 100.0 1.3E-40 4.6E-45 266.6 15.1 147 16-178 2-151 (203)
2 2jcb_A 5-formyltetrahydrofolat 100.0 6.5E-40 2.2E-44 262.3 11.4 142 19-178 8-149 (200)
3 1ydm_A Hypothetical protein YQ 100.0 2.4E-39 8.4E-44 256.3 9.8 138 23-178 1-138 (187)
4 1sou_A 5,10-methenyltetrahydro 100.0 8.5E-38 2.9E-42 248.9 10.6 133 23-178 2-134 (194)
5 1wkc_A HB8 TT1367 protein; str 100.0 5.1E-35 1.7E-39 231.2 10.2 124 23-178 2-125 (184)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 1.4E-33 4.7E-38 223.9 9.2 119 22-178 26-146 (189)
7 2gdt_A Leader protein; P65 hom 17.6 47 0.0016 23.2 1.2 15 163-177 76-90 (116)
8 2xrh_A Protein HP0721; unknown 17.2 2.6E+02 0.0088 19.1 5.1 33 24-56 54-86 (100)
9 1waz_A MERF; protein structure 14.3 14 0.00048 21.9 -1.8 13 154-166 18-30 (46)
10 2zi0_A Protein 2B, TAV2B; RNAI 14.3 2.6E+02 0.0089 17.8 6.1 36 19-54 17-55 (75)
No 1
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=1.3e-40 Score=266.59 Aligned_cols=147 Identities=31% Similarity=0.563 Sum_probs=129.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCC
Q 030395 16 DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADG 95 (178)
Q Consensus 16 ~~~~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~ 95 (178)
.|+++.+.|++||++++++|++|+++++..+|..|+++|++++.|+++++|++|+|++ +||||.+||+.+|+
T Consensus 2 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------ 73 (203)
T 3hy3_A 2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------ 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH------
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH------
Confidence 3667889999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred CCCCCcEEEEeeeeCCCCceEEEEeCCCC---CcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCc
Q 030395 96 DTKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRR 172 (178)
Q Consensus 96 ~~~~gk~v~lP~v~~~~~~m~f~~~~~~~---~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~R 172 (178)
.||+|+||+|...+..|.|+.|.+.+ +|.+|.|||+||..... ..+. ..+..+|||||||||||++|+|
T Consensus 74 ---~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~~~-~~~~~~DlvlVP~vaFD~~G~R 145 (203)
T 3hy3_A 74 ---RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----REEA-LSTGGLDLIFMPGLGFDKHGNR 145 (203)
T ss_dssp ---TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CCBG-GGTTCCSEEEECCSEECTTCCE
T ss_pred ---CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----cccc-cCccCCCEEEeCCeEECCCCce
Confidence 99999999997655579999998764 57899999999975311 0111 2345799999999999999999
Q ss_pred cccCCC
Q 030395 173 LGRGGG 178 (178)
Q Consensus 173 LG~GgG 178 (178)
||||||
T Consensus 146 LG~GgG 151 (203)
T 3hy3_A 146 LGRGKG 151 (203)
T ss_dssp ECSSSC
T ss_pred ecCCCc
Confidence 999999
No 2
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=6.5e-40 Score=262.35 Aligned_cols=142 Identities=25% Similarity=0.421 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 030395 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK 98 (178)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~ 98 (178)
.+++.|++||++++++|++|+++++..+|..|+++|.+++.|+++++|++|+|++ +||||.+|++.+|+
T Consensus 8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------- 76 (200)
T 2jcb_A 8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK--------- 76 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence 5788999999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred CCcEEEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 99 ~gk~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
.||+|+||++...++.|.|+.|++.++|.+|.|||+||.... .. ...+..+|+|||||||||++|+|||||||
T Consensus 77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~------~~-~~~~~~iDlvlVP~vAfD~~G~RLG~GgG 149 (200)
T 2jcb_A 77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPAL------TE-EVNADEIDLQIVPGVAYTERGERIGYGGG 149 (200)
T ss_dssp TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGG------CE-ECCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCcc------cc-cCCccCCCEEEECCeEECCCCCeeccCCc
Confidence 999999999975455799999999889999999999997421 00 12345789999999999999999999999
No 3
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.4e-39 Score=256.30 Aligned_cols=138 Identities=22% Similarity=0.385 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395 23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK 102 (178)
Q Consensus 23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~ 102 (178)
.|++||++++++|++++++++...|..|+++|.+++.|+++++|++|+|++ +||||.+|++.+|+ .||+
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~ 69 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ 69 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence 388999999999999999999999999999999999999999999999998 79999999999999 9999
Q ss_pred EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
|+||++...++.|.|+.|++.++|.+|.|||+||..... . ......+|+|||||||||++|+|||||||
T Consensus 70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~------~-~~~~~~iDlvivP~vafD~~G~RLG~GgG 138 (187)
T 1ydm_A 70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKT------K-EVNPSQIDLMIVPGVCFDVNGFRVGFGGG 138 (187)
T ss_dssp EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CC------C-CCCGGGCCEEECCCSEEETTSCEECCSCC
T ss_pred EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCccc------c-cCCccCCCEEEeCCeEECCCCCcccCCcc
Confidence 999999643457999999998899999999999974210 0 12345789999999999999999999999
No 4
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=8.5e-38 Score=248.91 Aligned_cols=133 Identities=29% Similarity=0.471 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395 23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK 102 (178)
Q Consensus 23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~ 102 (178)
.|++||++++++|++++++++...|..|+++|.+++.|+++++|++|+|++ +||||.+|++.+|+ . |+
T Consensus 2 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~ 69 (194)
T 1sou_A 2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KE 69 (194)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SE
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CC
Confidence 489999999999999999999999999999999999999999999999998 79999999999999 8 99
Q ss_pred EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
|+||+| . ++.|.|+.|++.++|.+|.|||+||.. .. . ..+..+|+|||||||||++|+|||||||
T Consensus 70 v~lP~~-~-~~~m~f~~~~~~~~L~~g~~GI~EP~~-~~-------~-~~~~~iDlvlvP~vafD~~G~RLG~GgG 134 (194)
T 1sou_A 70 LILPKV-E-GNEISLYRVHSPACLGVGAFGIMEPVE-GE-------R-VNPEDVDFIAVPGVAFDLEGYRLGFGKG 134 (194)
T ss_dssp EEEEEE-S-SSSEEEEEESSSCCCEECSSSCEECCS-SE-------E-ECGGGCSEEEECCSCBCSSSCBCCSCCS
T ss_pred EEEEEe-c-CCeeEEEEECCCCccCCCCCCCCCCCc-cc-------c-CCCCCCCEEEECCeEECCCCceeccCCc
Confidence 999999 3 347999999998999999999999973 10 1 1345789999999999999999999999
No 5
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=5.1e-35 Score=231.20 Aligned_cols=124 Identities=27% Similarity=0.453 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 030395 23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK 102 (178)
Q Consensus 23 ~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~ 102 (178)
.|++||++++++|++++.++ .|..|+++|.+++.|+++++|++|+|++ +||||.+|++ |+ . |+
T Consensus 2 ~K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~ 64 (184)
T 1wkc_A 2 TKAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-AR 64 (184)
T ss_dssp CHHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CE
T ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CC
Confidence 38999999999999999987 7889999999999999999999999998 7999999999 77 8 99
Q ss_pred EEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
|+||+|..+ .|.|+.|+ +|.+|.|||+|| ... . ..+..+|+|||||||||++|+|||||||
T Consensus 65 v~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~--------~-~~~~~iDlvlvP~vafD~~G~RLG~GgG 125 (184)
T 1wkc_A 65 YYLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP--------P-EDPRVLDLVVVPGLAFDREGYRLGHGQG 125 (184)
T ss_dssp EEEEEEETT--EEEEEESC---CBC-------CB-CSC--------C-BCGGGCSEEEECCSEEETTSCEECCSSC
T ss_pred EEEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc--------c-CCCCCCCEEEECcEEECCCCCEeeCCcc
Confidence 999998643 79999998 899999999999 321 0 1345789999999999999999999999
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=1.4e-33 Score=223.90 Aligned_cols=119 Identities=21% Similarity=0.332 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCeEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 030395 22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR 100 (178)
Q Consensus 22 ~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g 100 (178)
+.|++||++++++|++++++++...|..|+++|.+++.|+ ++++|++|+|++ +||||.+|++.+|+ .|
T Consensus 26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g 94 (189)
T 1sbq_A 26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN 94 (189)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence 4599999999999999999999999999999999999999 999999999999 79999999999999 89
Q ss_pred c-EEEEeeeeCCCCceEEEEeCCCCCcccCcCccCCCCCCCCCCCccccccCCCCCccEEEEccceecCCCCccccCCC
Q 030395 101 K-KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (178)
Q Consensus 101 k-~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~GI~EP~~~~~~~~~~~~~~~~~~~iDlvlVP~lAFD~~G~RLG~GgG 178 (178)
| +|+||+|..+ +.|.|+.|++. |. .+..+|+|||||||||++|+|||||||
T Consensus 95 k~~v~lP~~~~~-~~m~f~~~~~~------------~~--------------~~~~iDlvlVP~vAfD~~G~RLG~GgG 146 (189)
T 1sbq_A 95 QIRAVYPKVISD-TEIIFIDQETN------------TF--------------EPNQIDCFLIPLVGFNKDNYRLGFGKG 146 (189)
T ss_dssp TCEEEEEEECSS-SCEEEECTTCC------------EE--------------CGGGCCEEEEECSEECTTCCEECCSSC
T ss_pred CCeEEEeEEccC-CceEEEEeCCC------------CC--------------CcccCCEEEECceEECCCCCEeecCCc
Confidence 9 9999999643 46999999754 21 113689999999999999999999999
No 7
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=17.57 E-value=47 Score=23.21 Aligned_cols=15 Identities=33% Similarity=0.590 Sum_probs=13.8
Q ss_pred cceecCCCCccccCC
Q 030395 163 GLAFDRSGRRLGRGG 177 (178)
Q Consensus 163 ~lAFD~~G~RLG~Gg 177 (178)
=|+||++|-|-|++|
T Consensus 76 EL~a~~dgV~YGRsG 90 (116)
T 2gdt_A 76 ELVAEMDGIQYGRSG 90 (116)
T ss_dssp EEEEESSCTTTTSSS
T ss_pred hhhhhhcCcccccCc
Confidence 789999999999987
No 8
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=17.21 E-value=2.6e+02 Score=19.13 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 030395 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE 56 (178)
Q Consensus 24 K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~ 56 (178)
++.+++.+.+...+||.+++...-..|.+.+..
T Consensus 54 ~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~k 86 (100)
T 2xrh_A 54 HKQLHEYATKNTDKMTVADFEARQKAVKEALKK 86 (100)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445666666677789998888888888887764
No 9
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=14.31 E-value=14 Score=21.85 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=10.7
Q ss_pred CCccEEEEcccee
Q 030395 154 EPVDLFLLPGLAF 166 (178)
Q Consensus 154 ~~iDlvlVP~lAF 166 (178)
.-+|.|+.|+|+|
T Consensus 18 gyLDyVLlPaLa~ 30 (46)
T 1waz_A 18 GYLDYVLLPALAI 30 (46)
T ss_dssp SCCCCCSCCHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3579999999987
No 10
>2zi0_A Protein 2B, TAV2B; RNAI suppression, nucleus, suppressor of RNA silencing; 2.82A {Tomato aspermy virus} PDB: 3cz3_A
Probab=14.29 E-value=2.6e+02 Score=17.82 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHH
Q 030395 19 SIFQQKRILRSQVRKTLKS---MDPSLRSHEDNAIQKIV 54 (178)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~---ls~~~~~~~s~~i~~~l 54 (178)
.+.+.|+.-|+..++.|+. =||.++.......+.++
T Consensus 17 rm~Ekkk~rRk~Hk~NRkeRGHKSPSEr~RS~l~~~~~~ 55 (75)
T 2zi0_A 17 RMNQKKQAQRKRHKLNRKERGHKSPSEQRRSELWHARQV 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHhccCCCHHHHHHHHHHHHHhh
Confidence 4556677888888887775 47877766555544443
Done!