RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030395
         (178 letters)



>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 42.5 bits (99), Expect = 4e-06
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y              
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPL----------- 48

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                     + +     + Y  R        +   +     L      +LEP     D 
Sbjct: 49  --------PHELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGLLEPTTPPEDP 100

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                       +DL ++PGLAFDR G RLG G G
Sbjct: 101 RV----------LDLVVVPGLAFDREGYRLGHGQG 125


>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
           homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 164

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 38/156 (24%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE-APWFKSSQRLCAYISCSALREVDTSK 82
           K  LR Q+ +   ++    +SH D  I + ++         + +  Y       EV    
Sbjct: 3   KNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVD 60

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDAD 142
              + L         K  +   V      ++ +      +                    
Sbjct: 61  FFFEFL---------KINQIRAVYPKVISDTEIIFIDQETN------------------- 92

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                        +D FL+P + F++   RLG G G
Sbjct: 93  -------TFEPNQIDCFLIPLVGFNKDNYRLGFGKG 121


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
           domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 24.4 bits (53), Expect = 7.0
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSL-----RSHEDNAIQKIVLEAP 58
           +ND+S        +    ++  I +++ R   K ++  +      ++    + ++V   P
Sbjct: 11  ANDASKVLGS---IAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKP 67

Query: 59  WFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103
             +  Q+L        +RE +  K + ++LQ P  D       +L
Sbjct: 68  -NRERQKL--------MREQNILKQIFKLLQAPFTDCGDGPMLRL 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,308
Number of extensions: 25600
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)