BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030396
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 10 DLSKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACS 69
DL + C +L++TP +YLVLDEAD++ ++G + V +
Sbjct: 147 DLER-GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 205
Query: 70 NPSIVRS--LFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLL 127
P VR +FSAT P ++ LAR + + + + VGR + SE+I QK+V+ + +
Sbjct: 206 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSF 265
Query: 128 ALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174
L A + L+FV++K A L L + IH D SQ
Sbjct: 266 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 18 ILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77
I++ TP ++ VLDEAD++ G + D K SN +V L
Sbjct: 136 IIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV--L 193
Query: 78 FSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 137
SAT+P V E+ + M D +R++V ++ E I+Q + EE KL L +
Sbjct: 194 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 253
Query: 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+IF+ ++ + L ++ D +H D+ Q +
Sbjct: 254 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKE 292
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 18 ILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77
I++ TP ++ VLDEAD++ G + D K SN +V L
Sbjct: 162 IIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV--L 219
Query: 78 FSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 137
SAT+P V E+ + M D +R++V ++ E I+Q + EE KL L +
Sbjct: 220 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 279
Query: 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+IF+ ++ + L ++ D +H D+ Q +
Sbjct: 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKE 318
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74
+ +I++ TP V+Y +LDEAD+ G +K ++ ++ AC+ +
Sbjct: 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXG-FIKDVEKILNACNKDKRI 181
Query: 75 RSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEE-----GKLLAL 129
LFSAT P + LA+ D + K + +I+Q V E +LL
Sbjct: 182 -LLFSATXPREILNLAKKYXGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKN 236
Query: 130 RQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
++ + L+F ++K KEL L +AG IH DLSQ+Q
Sbjct: 237 KEFYG-------LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQ 276
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 13 KFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS 72
+ C +L++TP +Y+VLDEAD++ ++G I +++ + PS
Sbjct: 148 QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG-FEPQIRKIIEESNMPS 206
Query: 73 IVRS---LFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKL 116
+ +FSAT P +++LA +++ + + VGR + S+SIKQ++
Sbjct: 207 GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Query: 18 ILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77
I++ TP +++ +LDEAD++ G K + P+ L
Sbjct: 142 IVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTLLPPTTQVVL 199
Query: 78 FSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 137
SAT+P+ V E+ M + VR++V + E IKQ V EE K L +
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+IF ++ + +EL +L D I+SDL Q +
Sbjct: 260 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 298
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 40 VEYLVLDEADKLFEVG------NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93
++ LVLDEAD++ G ++ +++ P + L SATLP V E+
Sbjct: 144 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV--------LISATLPHEVLEMTNKF 195
Query: 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKE 153
M D +R++V R E IKQ V EE K L + +IF +K +
Sbjct: 196 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 255
Query: 154 LYGELAFDDIRAGVIHSDLSQTQ 176
L ++ + +H D+ Q +
Sbjct: 256 LTEKMREANFTVSSMHGDMPQKE 278
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 40 VEYLVLDEADKLFEVG------NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93
++ LVLDEAD++ G ++ +++ P + L SATLP + E+
Sbjct: 181 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV--------LISATLPHEILEMTNKF 232
Query: 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKE 153
M D +R++V R E IKQ V EE K L + +IF +K +
Sbjct: 233 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 292
Query: 154 LYGELAFDDIRAGVIHSDLSQTQ 176
L ++ + +H D+ Q +
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKE 315
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 40 VEYLVLDEADKLFEVG------NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93
++ LVLDEAD++ G ++ +++ P + L SATLP + E+
Sbjct: 159 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV--------LISATLPHEILEMTNKF 210
Query: 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKE 153
M D +R++V R E IKQ V EE K L + +IF +K +
Sbjct: 211 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 270
Query: 154 LYGELAFDDIRAGVIHSDLSQTQ 176
L ++ + +H D+ Q +
Sbjct: 271 LTEKMREANFTVSSMHGDMPQKE 293
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 40 VEYLVLDEADKLFEVG------NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93
++ LVLDEAD++ G ++ +++ P + L SATLP + E+
Sbjct: 180 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV--------LISATLPHEILEMTNKF 231
Query: 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKE 153
M D +R++V R E IKQ V EE K L + +IF +K +
Sbjct: 232 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 291
Query: 154 LYGELAFDDIRAGVIHSDLSQTQ 176
L ++ + +H D+ Q +
Sbjct: 292 LTEKMREANFTVSSMHGDMPQKE 314
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 40 VEYLVLDEADKLFEVG------NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93
++ LVLDEAD++ G ++ +++ P + L SATLP + E+
Sbjct: 181 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV--------LISATLPHEILEMTNKF 232
Query: 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKE 153
M D +R++V R E IKQ V EE K L + +IF +K +
Sbjct: 233 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 292
Query: 154 LYGELAFDDIRAGVIHSDLSQTQ 176
L ++ + +H D+ Q +
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKE 315
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 40 VEYLVLDEADKLFEVG------NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93
++ LVLDEAD++ G ++ +++ P + L SATLP + E+
Sbjct: 144 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV--------LISATLPHEILEMTNKF 195
Query: 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKE 153
M D +R++V R E IKQ V EE K L + +IF +K +
Sbjct: 196 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 255
Query: 154 LYGELAFDDIRAGVIHSDLSQTQ 176
L ++ + +H D+ Q +
Sbjct: 256 LTEKMREANFTVSSMHGDMPQKE 278
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 2/164 (1%)
Query: 13 KFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS 72
+ + +++ TP +++ VLDEAD + + L V + +
Sbjct: 119 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 178
Query: 73 IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQS 132
+ LFSAT D V + A+ I+ +A + + ++IKQ + +E K L +
Sbjct: 179 QL-VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL 237
Query: 133 FAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+ +IFV +K A LYG+L + ++H DL QTQ
Sbjct: 238 YGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDL-QTQ 280
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 2/164 (1%)
Query: 13 KFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS 72
+ + +++ TP +++ VLDEAD + + L V + +
Sbjct: 119 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 178
Query: 73 IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQS 132
+ LFSAT D V + A+ I+ +A + + ++IKQ + +E K L +
Sbjct: 179 QL-VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL 237
Query: 133 FAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+ +IFV +K A LYG+L + ++H DL QTQ
Sbjct: 238 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDL-QTQ 280
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74
+ DI+++TP S E +++DEAD +FE+G + I ++ SN I
Sbjct: 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG-FIDDIKIILAQTSNRKIT 163
Query: 75 RSLFSATLPDFVEELARSIM--HDAVRVIVGRKNTASESIKQKLVFAGSE-EGKLLALRQ 131
LFSAT+P+ + ++ + + ++ + +G N ++ K V + K+ ALR
Sbjct: 164 -GLFSATIPEEIRKVVKDFITNYEEIEACIGLAN-----VEHKFVHVKDDWRSKVQALR- 216
Query: 132 SFAESLNPPVLIFVQSKDRAKEL 154
E+ + V++FV++++R +L
Sbjct: 217 ---ENKDKGVIVFVRTRNRVAKL 236
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 18 ILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77
I++ TP +++ +LDEAD+ G K + P+ L
Sbjct: 141 IVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSG--FKEQIYQIFTLLPPTTQVVL 198
Query: 78 FSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 137
SAT P+ V E+ + VR++V + E IKQ V EE K L +
Sbjct: 199 LSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 258
Query: 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+IF ++ + +EL +L D I+SDL Q +
Sbjct: 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 297
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVG------NLLKHIDPVVKAC 68
C ++I+TP ++VLDEAD++ ++G ++ H+
Sbjct: 179 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV------T 232
Query: 69 SNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKL--VFAGSEEGKL 126
P +FSAT P+ ++ +A + + V V +G A +KQ + V ++ KL
Sbjct: 233 MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL 292
Query: 127 LALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
+ + A+ ++FV++K A L L+ + IH D Q+Q
Sbjct: 293 IEILSEQADG----TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQ 338
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 17 DILISTPXXXXXXXXX--XXXXXSRVEYLVLDEADKLFEVG--NLLKHIDPVVKACSNPS 72
DIL++TP + VE+LV+DE+DKLFE G + + AC++
Sbjct: 151 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 210
Query: 73 IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNT 107
+ R++FSAT VE+ + + + + V +G +N+
Sbjct: 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNS 245
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 12 SKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNL------LKHIDPVV 65
+K I+I TP ++ VLDEAD + + L +KH+ P
Sbjct: 232 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP-- 289
Query: 66 KACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGK 125
N IV LFSAT + VE+ A +A + + + + E IKQ + SEE K
Sbjct: 290 ---RNTQIV--LFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHK 344
Query: 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
L + + +IF + KD A+E+ + D + +L Q
Sbjct: 345 YNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQ 395
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74
D +++TP SRVE VLDEAD++ +G + ++ ++ A + PS
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG-FEEEVEALLSA-TPPSRQ 177
Query: 75 RSLFSATLPDFVEELARSIMHDAVRVIV 102
LFSATLP + + LA M + V + V
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74
D +++TP SRVE VLDEAD++ +G + ++ ++ A + PS
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG-FEEEVEALLSA-TPPSRQ 177
Query: 75 RSLFSATLPDFVEELARSIMHDAVRVIV 102
LFSATLP + + LA M + V + V
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSR-VEYLVLDEADKLFEVG--NLLKHIDPVVKA 67
++K +I+I+TP R V+Y VLDEAD+L E+G + L+ I ++
Sbjct: 146 MNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 205
Query: 68 CSNPS---IVRSLFSATLPDFVEELARSIMH 95
++ S I LFSATL D V++LA +IM+
Sbjct: 206 KNSKSADNIKTLLFSATLDDKVQKLANNIMN 236
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSR-VEYLVLDEADKLFEVG--NLLKHIDPVVKA 67
++K +I+I+TP R V+Y VLDEAD+L E+G + L+ I ++
Sbjct: 197 MNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 256
Query: 68 CSNPS---IVRSLFSATLPDFVEELARSIMH 95
++ S I LFSATL D V++LA +IM+
Sbjct: 257 KNSKSADNIKTLLFSATLDDKVQKLANNIMN 287
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSR-VEYLVLDEADKLFEVG--NLLKHIDPVVKA 67
++K +I+I+TP R V+Y VLDEAD+L E+G + L+ I ++
Sbjct: 146 MNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 205
Query: 68 CSNPS---IVRSLFSATLPDFVEELARSIMH 95
++ S I LFSATL D V++LA +IM+
Sbjct: 206 KNSKSADNIKTLLFSATLDDKVQKLANNIMN 236
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 17 DILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVG---NLLKHIDPVVKACSNPSI 73
+I I+TP R YLVLDEAD++ ++G + K +D + P
Sbjct: 168 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR 222
Query: 74 VRSLFSATLPDFVEELARSIMHDAVRVIVG 103
++SAT P V +LA + D + + +G
Sbjct: 223 QTLMWSATWPKEVRQLAEDFLKDYIHINIG 252
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 17 DILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVG---NLLKHIDPVVKACSNPSI 73
+I I+TP R YLVLDEAD++ ++G + K +D + P
Sbjct: 154 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR 208
Query: 74 VRSLFSATLPDFVEELARSIMHDAVRVIVG 103
++SAT P V +LA + D + + +G
Sbjct: 209 QTLMWSATWPKEVRQLAEDFLKDYIHINIG 238
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 10 DLSKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC- 68
D+SK DI+I+TP + YLV+DEADK+ ++ +P ++
Sbjct: 139 DISK-GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM-----EFEPQIRKIL 192
Query: 69 --SNPSIVRSLFSATLPDFVEELARSIMHDAVRVIV 102
P + SAT PD V +LA S + D + V V
Sbjct: 193 LDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN 70
L K I++ TP +++ +LDEADK+ E ++ + + + + +
Sbjct: 123 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPH 182
Query: 71 PSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTAS-ESIKQKLVFAGSEEG--KLL 127
V +FSATL + + R M D + + V + + ++Q V E KL
Sbjct: 183 EKQV-MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 241
Query: 128 ALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
L + V+IFV+S R L L + A IH + Q +
Sbjct: 242 DLLDVLEFN---QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEE 287
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKA----CSNPSIVRSLFSATLPDFVEELARSIM 94
+++ VLDEAD + H D ++ N ++ LFSAT D V + A+ ++
Sbjct: 168 KIKVFVLDEADVMIATQG---HQDQSIRIQRMLPRNCQML--LFSATFEDSVWKFAQKVV 222
Query: 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKEL 154
D + + R+ ++IKQ V S + K AL + +IF ++ A L
Sbjct: 223 PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWL 282
Query: 155 YGELAFDDIRAGVIHSDL 172
EL+ + + ++ ++
Sbjct: 283 AAELSKEGHQVALLSGEM 300
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKA----CSNPSIVRSLFSATLPDFVEELARSIM 94
+++ VLDEAD + H D ++ N ++ LFSAT D V + A+ ++
Sbjct: 184 KIKVFVLDEADVMIATQG---HQDQSIRIQRMLPRNCQML--LFSATFEDSVWKFAQKVV 238
Query: 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKEL 154
D + + R+ ++IKQ V S + K AL + +IF ++ A L
Sbjct: 239 PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWL 298
Query: 155 YGELAFDDIRAGVIHSDL 172
EL+ + + ++ ++
Sbjct: 299 AAELSKEGHQVALLSGEM 316
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKA----CSNPSIVRSLFSATLPDFVEELARSIM 94
+++ VLDEAD + H D ++ N ++ LFSAT D V + A+ ++
Sbjct: 205 KIKVFVLDEADVMIATQG---HQDQSIRIQRMLPRNCQML--LFSATFEDSVWKFAQKVV 259
Query: 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKEL 154
D + + R+ ++IKQ V S + K AL + +IF ++ A L
Sbjct: 260 PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWL 319
Query: 155 YGELAFDDIRAGVIHSDL 172
EL+ + + ++ ++
Sbjct: 320 AAELSKEGHQVALLSGEM 337
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKA----CSNPSIVRSLFSATLPDFVEELARSIM 94
+++ VLDEAD + H D ++ N ++ LFSAT D V + A+ ++
Sbjct: 235 KIKVFVLDEADVMIATQG---HQDQSIRIQRMLPRNCQML--LFSATFEDSVWKFAQKVV 289
Query: 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKEL 154
D + + R+ ++IKQ V S + K AL + +IF ++ A L
Sbjct: 290 PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWL 349
Query: 155 YGELAFDDIRAGVIHSDL 172
EL+ + + ++ ++
Sbjct: 350 AAELSKEGHQVALLSGEM 367
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 7/169 (4%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN 70
L K I++ TP +++ +LDE DK+ E ++ + + + + +
Sbjct: 124 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183
Query: 71 PSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTAS-ESIKQKLVFAGSEEG--KLL 127
V +FSATL + + R M D + + V + + ++Q V E KL
Sbjct: 184 EKQV-MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242
Query: 128 ALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
L + V+IFV+S R L L + A IH + Q +
Sbjct: 243 DLLDVLEFN---QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEE 288
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 7/169 (4%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN 70
L K I++ TP +++ +LDE DK+ E ++ + + + + +
Sbjct: 124 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183
Query: 71 PSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTAS-ESIKQKLVFAGSEEG--KLL 127
V +FSATL + + R M D + + V + + ++Q V E KL
Sbjct: 184 EKQV-MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242
Query: 128 ALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
L + V+IFV+S R L L + A IH + Q +
Sbjct: 243 DLLDVLEFN---QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEE 288
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 18 ILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77
I++ TP ++ VLDEAD++ G I + + N SI L
Sbjct: 152 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG-FKDQIYEIFQKL-NTSIQVVL 209
Query: 78 FSATLPDFVEELARSIMHDAVRVIVGRK 105
SAT+P V E+ + M D +R++V ++
Sbjct: 210 LSATMPTDVLEVTKKFMRDPIRILVKKE 237
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 11 LSKFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN 70
L K I++ TP +++ +LDE DK+ E ++ + + + + +
Sbjct: 130 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189
Query: 71 PSIVRSLFSATLPDFVEELARSIMHDAVRVIV 102
V +FSATL + + R M D + + V
Sbjct: 190 EKQV-MMFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 18 ILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77
I++ TP + VLDEAD++ G + D SN +V L
Sbjct: 137 IIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVV--L 194
Query: 78 FSATLPDFVEELARSIMHDAVRVIV 102
SAT+P V E+ M D +R++V
Sbjct: 195 LSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 16 CDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVR 75
I++ TP +++ +LDEAD++ G K + P+
Sbjct: 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTLLPPTTQV 189
Query: 76 SLFSATLPDFVEELARSIMHDAVRVIVGR 104
L SAT+P+ V E+ M + VR++V +
Sbjct: 190 VLLSATMPNDVLEVTTKFMRNPVRILVKK 218
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 16 CDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVR 75
I++ TP +++ +LDEAD++ G K + P+
Sbjct: 139 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTLLPPTTQV 196
Query: 76 SLFSATLPDFVEELARSIMHDAVRVIV 102
L SAT+P+ V E+ M + VR++V
Sbjct: 197 VLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 16 CDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVR 75
C I + +P + +LDEADKL E G+ + I+ + S P+ +
Sbjct: 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS--SLPASKQ 200
Query: 76 SL-FSATLPDFVEELARSIMHDAVRV 100
L SAT P+F+ M D V
Sbjct: 201 MLAVSATYPEFLANALTKYMRDPTFV 226
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 40 VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS-LFSATLPDFVEELARSIMHDAV 98
++YLV+DEAD++ + + +D ++K P ++ LFSAT+ V++L R+ + + V
Sbjct: 187 LKYLVMDEADRILNM-DFETEVDKILKVI--PRDRKTFLFSATMTKKVQKLQRAALKNPV 243
Query: 99 RVIV 102
+ V
Sbjct: 244 KCAV 247
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74
+ IL+ TP S ++DEADK+ K I + + P+
Sbjct: 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILSFLPPTHQ 196
Query: 75 RSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA 134
LFSAT P V+E +H + + + T + I Q F E KL L F+
Sbjct: 197 SLLFSATFPLTVKEFMVKHLHKPYEINLMEELTL-KGITQYYAFV-EERQKLHCLNTLFS 254
Query: 135 ESLNPPVLIFVQSKDRAKEL 154
+ +IF S +R + L
Sbjct: 255 KLQINQAIIFCNSTNRVELL 274
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 110 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169
++IKQ + +E K L + + +IFV +K A LYG+L + ++H
Sbjct: 7 DAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILH 66
Query: 170 SDLSQTQ 176
DL QTQ
Sbjct: 67 GDL-QTQ 72
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 110 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169
++IKQ +E K L + + +IFV +K A LYG+L + ++H
Sbjct: 8 DAIKQLYXDCKNEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILH 67
Query: 170 SDLSQTQ 176
DL QTQ
Sbjct: 68 GDL-QTQ 73
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 110 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169
++IKQ +E K L + + +IFV +K A LYG+L + ++H
Sbjct: 9 DAIKQLYXDCKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILH 68
Query: 170 SDLSQTQ 176
DL QTQ
Sbjct: 69 GDL-QTQ 74
>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
Length = 323
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 53 EVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESI 112
E+ N L++ D ++K +I SL DF +EL + V+V++ +T+ +S+
Sbjct: 115 EISNFLENFDQLIKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLL---DTSGDSL 171
Query: 113 KQKL 116
+Q L
Sbjct: 172 RQVL 175
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 15 SCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74
+ ++I+TP V+ +VLDEADKL + D ++ N I+
Sbjct: 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 181
Query: 75 RSLFSATLPDFVEELARS 92
L+SAT P V++ S
Sbjct: 182 --LYSATFPLSVQKFMNS 197
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 13 KFSCDILISTPXXXXXXXXXXXXXXSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS 72
+ + +++ TP +++ VLDEAD + + L V + +
Sbjct: 136 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 195
Query: 73 IVRSLFSATLPDFVEELARSIMHDA 97
+ LFSAT D V + A+ I+ +A
Sbjct: 196 QL-VLFSATFADAVRQYAKKIVPNA 219
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%)
Query: 110 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169
E IKQ V EE K L + +IF ++ + +EL +L D I+
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 170 SDLSQTQ 176
SDL Q +
Sbjct: 62 SDLPQQE 68
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 105 KNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164
+ + SE+I QK+V+ + + L A + L+FV++K A L L +
Sbjct: 13 QGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 72
Query: 165 AGVIHSDLSQ 174
IH D SQ
Sbjct: 73 CTSIHGDRSQ 82
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 40 VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS-LFSATLPDFVEELAR 91
++ LV+DEAD++ +VG + + ++K P+ ++ LFSAT VE+LAR
Sbjct: 202 LQCLVIDEADRILDVG-FEEELKQIIKLL--PTRRQTMLFSATQTRKVEDLAR 251
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 40 VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS--LFSATLPDFVEELARSIMHDA 97
++ LVLDEAD++ ++G D + N R LFSAT V++LAR + +
Sbjct: 172 LQMLVLDEADRILDMG----FADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP 227
Query: 98 VRVIVGRK 105
V V K
Sbjct: 228 EYVWVHEK 235
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 122 EEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176
EE K++ L + ++ PPVLIF + K ++ L + A IH Q +
Sbjct: 39 EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEE 92
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAK 152
+ D + VGR + + +I + + S+E KL+ L + F + +LIF Q+++ K
Sbjct: 269 LFRDLLNFTVGRLVSVARNITHVRISSRSKE-KLVELLEIFRDG----ILIFAQTEEEGK 323
Query: 153 ELYGELAFDDIRAGVIHSDLSQT 175
ELY L G S+ +
Sbjct: 324 ELYEYLKRFKFNVGETWSEFEKN 346
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 414
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAK 152
+ D + VGR + + +I + + S+E KL+ L + F + +LIF Q+++ K
Sbjct: 212 LFRDLLNFTVGRLVSVARNITHVRISSRSKE-KLVELLEIFRDG----ILIFAQTEEEGK 266
Query: 153 ELYGELAFDDIRAGVIHSDLSQ 174
ELY L G S+ +
Sbjct: 267 ELYEYLKRFKFNVGETWSEFEK 288
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 413
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAK 152
+ D + VGR + + +I + + S+E KL+ L + F + +LIF Q+++ K
Sbjct: 211 LFRDLLNFTVGRLVSVARNITHVRISSRSKE-KLVELLEIFRDG----ILIFAQTEEEGK 265
Query: 153 ELYGELAFDDIRAGVIHSDLSQ 174
ELY L G S+ +
Sbjct: 266 ELYEYLKRFKFNVGETWSEFEK 287
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
- P2 Form
Length = 415
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAK 152
+ D + VGR + + +I + + S+E KL+ L + F + +LIF Q+++ K
Sbjct: 213 LFRDLLNFTVGRLVSVARNITHVRISSRSKE-KLVELLEIFRDG----ILIFAQTEEEGK 267
Query: 153 ELYGELAFDDIRAGVIHSDLSQ 174
ELY L G S+ +
Sbjct: 268 ELYEYLKRFKFNVGETWSEFEK 289
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 111 SIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGEL 158
+K + + + GK + A+ +N P L+ +K A +LY EL
Sbjct: 31 GVKHQTLLGATGTGKTFTISNVIAQ-VNKPTLVIAHNKTLAGQLYSEL 77
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 111 SIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGEL 158
+K + + + GK + A+ +N P L+ +K A +LY EL
Sbjct: 31 GVKHQTLLGATGTGKTFTISNVIAQ-VNKPTLVIAHNKTLAGQLYSEL 77
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 111 SIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGEL 158
+K + + + GK + A+ +N P L+ +K A +LY EL
Sbjct: 31 GVKHQTLLGATGTGKTFTISNVIAQ-VNKPTLVIAHNKTLAGQLYSEL 77
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 111 SIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGEL 158
+K + + + GK + A+ +N P L+ +K A +LY EL
Sbjct: 31 GVKHQTLLGATGTGKTFTISNVIAQ-VNKPTLVIAHNKTLAGQLYSEL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,127,074
Number of Sequences: 62578
Number of extensions: 134209
Number of successful extensions: 479
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 62
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)