Query 030396
Match_columns 178
No_of_seqs 106 out of 1168
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 6.5E-39 1.4E-43 235.9 12.9 172 4-177 134-305 (400)
2 COG0513 SrmB Superfamily II DN 100.0 5.6E-37 1.2E-41 250.6 18.6 171 5-177 140-312 (513)
3 KOG0331 ATP-dependent RNA heli 100.0 1.3E-36 2.9E-41 242.6 15.2 170 6-177 206-380 (519)
4 KOG0330 ATP-dependent RNA heli 100.0 2.8E-36 6E-41 230.0 9.5 172 4-178 168-340 (476)
5 KOG0338 ATP-dependent RNA heli 100.0 2.5E-33 5.4E-38 220.1 9.0 173 4-178 291-466 (691)
6 KOG0326 ATP-dependent RNA heli 100.0 5.2E-33 1.1E-37 207.9 9.9 163 11-177 199-361 (459)
7 KOG4284 DEAD box protein [Tran 100.0 2.6E-32 5.7E-37 219.4 11.0 164 14-178 142-312 (980)
8 KOG0333 U5 snRNP-like RNA heli 100.0 1.7E-31 3.6E-36 210.4 15.1 164 11-177 368-556 (673)
9 PRK11776 ATP-dependent RNA hel 100.0 7.3E-31 1.6E-35 213.1 18.9 169 5-177 113-281 (460)
10 KOG0339 ATP-dependent RNA heli 100.0 3.5E-31 7.6E-36 208.1 15.8 169 7-177 338-507 (731)
11 PRK11634 ATP-dependent RNA hel 100.0 1.2E-30 2.6E-35 217.3 18.8 171 4-177 114-284 (629)
12 KOG0327 Translation initiation 100.0 3.9E-31 8.5E-36 201.5 13.0 160 13-177 143-302 (397)
13 PRK04837 ATP-dependent RNA hel 100.0 4.5E-30 9.7E-35 206.5 19.4 170 5-177 123-294 (423)
14 PRK10590 ATP-dependent RNA hel 100.0 4.1E-30 8.8E-35 208.4 19.0 170 5-177 115-284 (456)
15 KOG0342 ATP-dependent RNA heli 100.0 1.5E-30 3.2E-35 203.5 14.9 168 7-177 197-369 (543)
16 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-30 3E-35 206.4 14.6 170 5-178 181-355 (758)
17 KOG0335 ATP-dependent RNA heli 100.0 1.1E-30 2.5E-35 205.9 13.5 171 4-177 191-376 (482)
18 PTZ00110 helicase; Provisional 100.0 6.4E-30 1.4E-34 210.7 18.0 169 6-177 244-416 (545)
19 KOG0332 ATP-dependent RNA heli 100.0 9.4E-31 2E-35 199.0 11.1 162 15-177 207-369 (477)
20 PRK11192 ATP-dependent RNA hel 100.0 2.8E-29 6.1E-34 202.5 19.6 170 6-177 114-284 (434)
21 PRK04537 ATP-dependent RNA hel 100.0 2.2E-29 4.7E-34 208.4 18.0 170 5-177 124-296 (572)
22 KOG0341 DEAD-box protein abstr 100.0 5.4E-31 1.2E-35 201.6 5.8 170 4-177 291-460 (610)
23 KOG0336 ATP-dependent RNA heli 100.0 1.6E-29 3.5E-34 194.6 13.0 169 6-177 334-504 (629)
24 KOG0346 RNA helicase [RNA proc 100.0 4.4E-29 9.4E-34 193.3 13.9 166 10-178 140-308 (569)
25 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-28 4.5E-33 201.0 18.6 169 5-177 236-407 (518)
26 KOG0345 ATP-dependent RNA heli 100.0 5E-29 1.1E-33 194.2 13.9 163 12-177 128-296 (567)
27 KOG0347 RNA helicase [RNA proc 100.0 3.9E-30 8.5E-35 203.6 4.0 171 5-178 303-503 (731)
28 PTZ00424 helicase 45; Provisio 100.0 2.9E-27 6.3E-32 189.0 19.3 169 7-177 138-306 (401)
29 PRK01297 ATP-dependent RNA hel 100.0 2.3E-27 5E-32 193.3 18.6 170 6-177 203-374 (475)
30 KOG0340 ATP-dependent RNA heli 99.9 3.6E-27 7.8E-32 178.5 9.9 171 5-178 115-294 (442)
31 KOG0334 RNA helicase [RNA proc 99.9 1.7E-26 3.6E-31 194.0 11.7 172 4-177 477-652 (997)
32 KOG0337 ATP-dependent RNA heli 99.9 2.9E-26 6.4E-31 176.9 11.3 171 4-177 129-300 (529)
33 KOG0348 ATP-dependent RNA heli 99.9 2.1E-26 4.5E-31 182.2 8.8 170 6-177 253-486 (708)
34 KOG0329 ATP-dependent RNA heli 99.9 2.9E-26 6.3E-31 167.4 5.9 146 5-152 151-297 (387)
35 TIGR02621 cas3_GSU0051 CRISPR- 99.9 5.6E-23 1.2E-27 173.4 17.0 163 4-177 124-309 (844)
36 PRK09401 reverse gyrase; Revie 99.9 4.6E-22 9.9E-27 174.6 16.5 156 6-172 169-365 (1176)
37 KOG0349 Putative DEAD-box RNA 99.9 4.6E-23 1E-27 160.3 9.0 171 5-177 329-547 (725)
38 TIGR03817 DECH_helic helicase/ 99.9 3.5E-21 7.5E-26 163.6 15.0 164 7-177 121-318 (742)
39 KOG0344 ATP-dependent RNA heli 99.9 4E-22 8.8E-27 159.3 7.9 170 7-177 254-427 (593)
40 TIGR00614 recQ_fam ATP-depende 99.9 8.1E-21 1.8E-25 154.7 14.6 159 13-177 99-265 (470)
41 PLN03137 ATP-dependent DNA hel 99.9 1.2E-20 2.7E-25 162.2 15.2 158 14-177 551-719 (1195)
42 TIGR01389 recQ ATP-dependent D 99.8 2.7E-20 5.8E-25 155.5 15.0 160 12-177 100-263 (591)
43 PRK09751 putative ATP-dependen 99.8 3E-20 6.5E-25 164.7 15.9 166 7-177 91-316 (1490)
44 PRK11057 ATP-dependent DNA hel 99.8 6.4E-20 1.4E-24 153.4 15.8 159 13-177 113-275 (607)
45 TIGR01054 rgy reverse gyrase. 99.8 2.4E-19 5.3E-24 157.7 16.6 154 10-174 172-365 (1171)
46 PRK13767 ATP-dependent helicas 99.8 3.3E-19 7.2E-24 154.1 14.2 165 8-177 139-329 (876)
47 TIGR01587 cas3_core CRISPR-ass 99.8 7.3E-20 1.6E-24 144.4 9.1 160 15-177 94-263 (358)
48 PRK00254 ski2-like helicase; P 99.8 3E-19 6.5E-24 152.1 12.9 154 14-177 113-310 (720)
49 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.4E-18 2.9E-23 148.5 16.5 156 12-177 87-251 (819)
50 PRK14701 reverse gyrase; Provi 99.8 1.4E-18 3E-23 156.2 16.9 153 11-172 173-367 (1638)
51 COG1202 Superfamily II helicas 99.8 6.4E-19 1.4E-23 141.3 12.6 156 14-177 314-479 (830)
52 PRK02362 ski2-like helicase; P 99.8 5.2E-19 1.1E-23 151.0 12.6 159 14-177 112-318 (737)
53 COG0514 RecQ Superfamily II DN 99.8 3.8E-19 8.2E-24 145.2 10.7 160 13-177 105-269 (590)
54 PRK11664 ATP-dependent RNA hel 99.8 3E-18 6.5E-23 146.5 16.0 155 13-177 91-254 (812)
55 PHA02653 RNA helicase NPH-II; 99.8 3.6E-18 7.7E-23 143.0 15.0 150 14-176 273-435 (675)
56 PRK11131 ATP-dependent RNA hel 99.8 7.8E-18 1.7E-22 147.5 16.3 155 13-177 161-328 (1294)
57 PRK10689 transcription-repair 99.8 1.1E-17 2.4E-22 147.1 16.5 147 14-177 702-850 (1147)
58 TIGR03158 cas3_cyano CRISPR-as 99.8 2.3E-17 5E-22 130.1 16.6 161 14-177 112-313 (357)
59 COG1201 Lhr Lhr-like helicases 99.8 1.1E-17 2.4E-22 141.0 14.6 165 7-178 115-294 (814)
60 KOG0350 DEAD-box ATP-dependent 99.8 6.7E-19 1.5E-23 138.9 6.7 173 3-177 253-472 (620)
61 PRK01172 ski2-like helicase; P 99.8 6.3E-18 1.4E-22 143.2 10.7 157 14-177 110-300 (674)
62 TIGR00580 mfd transcription-re 99.7 1E-16 2.2E-21 138.4 16.1 155 6-177 544-701 (926)
63 TIGR01967 DEAH_box_HrpA ATP-de 99.6 4.8E-15 1E-19 130.5 15.1 155 13-177 154-321 (1283)
64 PRK10917 ATP-dependent DNA hel 99.6 1.9E-14 4E-19 122.0 16.1 154 8-177 356-520 (681)
65 cd00268 DEADc DEAD-box helicas 99.6 5.7E-15 1.2E-19 107.7 10.3 90 9-100 113-202 (203)
66 PHA02558 uvsW UvsW helicase; P 99.6 2.9E-15 6.3E-20 123.1 9.2 153 15-177 201-383 (501)
67 KOG0351 ATP-dependent DNA heli 99.6 8.2E-15 1.8E-19 125.9 11.9 159 15-177 356-524 (941)
68 TIGR00643 recG ATP-dependent D 99.5 2.1E-13 4.6E-18 114.8 15.1 153 8-177 330-497 (630)
69 COG1205 Distinct helicase fami 99.5 2.7E-13 5.8E-18 116.7 15.1 164 10-177 162-353 (851)
70 COG1204 Superfamily II helicas 99.5 2.3E-13 5E-18 115.8 11.3 144 14-159 121-274 (766)
71 PF00270 DEAD: DEAD/DEAH box h 99.5 1.6E-13 3.5E-18 97.0 7.6 81 7-88 87-168 (169)
72 PRK13766 Hef nuclease; Provisi 99.4 4.4E-12 9.5E-17 109.4 16.0 68 13-82 105-172 (773)
73 KOG0952 DNA/RNA helicase MER3/ 99.4 3.8E-13 8.2E-18 114.3 8.9 141 14-161 210-372 (1230)
74 PRK09694 helicase Cas3; Provis 99.4 1.7E-12 3.6E-17 111.8 12.4 158 16-177 411-602 (878)
75 KOG0352 ATP-dependent DNA heli 99.4 1.8E-13 3.8E-18 107.1 5.4 164 11-177 109-294 (641)
76 TIGR03714 secA2 accessory Sec 99.4 3.9E-12 8.5E-17 107.4 13.4 57 121-177 405-463 (762)
77 KOG0353 ATP-dependent DNA heli 99.4 5.9E-12 1.3E-16 97.6 11.1 162 14-177 185-356 (695)
78 KOG0948 Nuclear exosomal RNA h 99.3 1E-11 2.2E-16 102.9 11.0 148 11-163 207-408 (1041)
79 PRK09200 preprotein translocas 99.3 1.5E-10 3.3E-15 98.5 14.0 57 121-177 409-467 (790)
80 KOG0951 RNA helicase BRR2, DEA 99.3 2.2E-11 4.8E-16 105.4 8.9 158 15-177 411-622 (1674)
81 COG4581 Superfamily II RNA hel 99.2 6E-10 1.3E-14 96.5 14.5 146 11-161 201-402 (1041)
82 PRK12904 preprotein translocas 99.2 5.8E-10 1.3E-14 95.1 12.8 51 121-171 411-463 (830)
83 TIGR00963 secA preprotein tran 99.2 4.8E-10 1E-14 94.5 11.8 51 121-171 386-438 (745)
84 KOG0947 Cytoplasmic exosomal R 99.2 4.5E-10 9.6E-15 95.4 11.5 74 11-86 375-448 (1248)
85 PRK13104 secA preprotein trans 99.2 3E-10 6.5E-15 97.2 10.5 55 123-177 427-483 (896)
86 COG1111 MPH1 ERCC4-like helica 99.1 2.4E-09 5.3E-14 85.7 13.2 69 14-84 106-174 (542)
87 TIGR00595 priA primosomal prot 99.1 1.5E-08 3.2E-13 83.5 16.6 64 13-85 74-142 (505)
88 smart00487 DEXDc DEAD-like hel 99.1 2.1E-09 4.6E-14 77.0 10.2 92 11-104 100-192 (201)
89 PRK04914 ATP-dependent helicas 99.1 2.9E-09 6.2E-14 92.8 12.6 54 124-177 479-533 (956)
90 COG1203 CRISPR-associated heli 99.1 5.9E-10 1.3E-14 95.5 8.3 159 16-177 311-479 (733)
91 PRK05580 primosome assembly pr 99.0 6.8E-08 1.5E-12 82.3 16.6 70 12-89 238-311 (679)
92 COG1643 HrpA HrpA-like helicas 98.9 1.2E-08 2.6E-13 87.6 11.9 155 14-176 138-301 (845)
93 PF06862 DUF1253: Protein of u 98.8 3.5E-07 7.6E-12 73.5 15.9 160 15-176 131-338 (442)
94 TIGR00603 rad25 DNA repair hel 98.8 1.7E-08 3.7E-13 85.5 8.5 149 16-177 344-530 (732)
95 PRK12898 secA preprotein trans 98.8 2.4E-08 5.2E-13 83.7 8.9 100 75-177 411-512 (656)
96 PRK13107 preprotein translocas 98.8 6.4E-08 1.4E-12 83.1 10.5 55 123-177 432-488 (908)
97 KOG0950 DNA polymerase theta/e 98.7 9E-08 1.9E-12 81.8 10.3 77 14-95 314-398 (1008)
98 COG1061 SSL2 DNA or RNA helica 98.7 2.3E-07 4.9E-12 75.5 10.0 154 16-177 123-321 (442)
99 KOG0922 DEAH-box RNA helicase 98.6 5.5E-07 1.2E-11 74.5 11.8 152 15-176 140-304 (674)
100 COG4098 comFA Superfamily II D 98.6 3.1E-06 6.8E-11 65.4 14.2 146 16-172 186-341 (441)
101 cd00046 DEXDc DEAD-like helica 98.5 8.1E-07 1.8E-11 59.9 7.5 68 13-82 77-144 (144)
102 COG1110 Reverse gyrase [DNA re 98.4 2.3E-06 5E-11 74.0 10.3 145 13-171 179-371 (1187)
103 KOG0920 ATP-dependent RNA heli 98.4 6.1E-06 1.3E-10 71.5 12.5 155 15-174 264-456 (924)
104 PRK11448 hsdR type I restricti 98.4 9.7E-06 2.1E-10 72.5 13.6 67 14-83 510-595 (1123)
105 COG1200 RecG RecG-like helicas 98.4 2.1E-05 4.5E-10 65.9 14.2 150 11-176 360-521 (677)
106 COG1197 Mfd Transcription-repa 98.3 1.3E-05 2.8E-10 70.6 12.7 145 14-176 696-843 (1139)
107 TIGR00631 uvrb excinuclease AB 98.3 3.3E-06 7.1E-11 71.7 7.9 56 122-177 424-481 (655)
108 PRK12899 secA preprotein trans 98.2 7.9E-07 1.7E-11 76.8 3.7 48 124-171 552-601 (970)
109 KOG0354 DEAD-box like helicase 98.2 4E-06 8.7E-11 70.9 6.8 75 12-87 151-226 (746)
110 PF14617 CMS1: U3-containing 9 98.2 2.1E-06 4.6E-11 64.4 4.6 47 3-49 164-211 (252)
111 PLN03142 Probable chromatin-re 98.2 1.9E-05 4.1E-10 69.9 10.9 54 124-177 471-526 (1033)
112 COG0556 UvrB Helicase subunit 98.1 2.6E-05 5.7E-10 63.6 9.7 98 72-177 386-485 (663)
113 cd00079 HELICc Helicase superf 98.1 1.6E-05 3.5E-10 53.3 7.5 54 124-177 12-67 (131)
114 PRK05298 excinuclease ABC subu 98.1 8.7E-06 1.9E-10 69.3 6.8 54 124-177 430-485 (652)
115 COG4096 HsdR Type I site-speci 97.9 3.2E-05 7E-10 65.9 7.2 152 15-174 256-467 (875)
116 PRK12906 secA preprotein trans 97.9 6.1E-05 1.3E-09 64.8 7.8 57 121-177 421-479 (796)
117 KOG0923 mRNA splicing factor A 97.7 0.00074 1.6E-08 56.7 11.5 150 17-176 357-520 (902)
118 TIGR00348 hsdR type I site-spe 97.6 0.0027 5.9E-08 54.5 13.2 62 15-83 338-403 (667)
119 KOG0949 Predicted helicase, DE 97.5 0.00017 3.7E-09 62.7 5.7 67 15-85 605-674 (1330)
120 PRK12900 secA preprotein trans 97.5 0.00054 1.2E-08 60.1 8.5 51 121-171 579-631 (1025)
121 TIGR02562 cas3_yersinia CRISPR 97.5 0.00018 3.8E-09 63.4 4.8 72 15-89 562-641 (1110)
122 KOG0925 mRNA splicing factor A 97.4 0.00087 1.9E-08 54.5 7.7 140 21-170 133-294 (699)
123 KOG0385 Chromatin remodeling c 97.4 0.0035 7.6E-08 53.6 11.0 54 124-177 471-526 (971)
124 PF02399 Herpes_ori_bp: Origin 97.3 0.006 1.3E-07 52.7 12.4 157 15-175 121-319 (824)
125 KOG0926 DEAH-box RNA helicase 97.2 0.0013 2.7E-08 56.5 7.3 142 13-161 347-504 (1172)
126 PF04851 ResIII: Type III rest 97.2 0.0011 2.4E-08 46.9 6.0 66 11-83 107-183 (184)
127 KOG0951 RNA helicase BRR2, DEA 97.1 0.0025 5.5E-08 57.1 8.1 136 13-159 1232-1380(1674)
128 KOG2340 Uncharacterized conser 96.9 0.00081 1.8E-08 55.1 3.3 154 14-169 384-583 (698)
129 KOG0924 mRNA splicing factor A 96.9 0.013 2.8E-07 49.8 10.1 148 16-175 446-610 (1042)
130 KOG3089 Predicted DEAD-box-con 96.6 0.0043 9.3E-08 45.3 4.6 42 6-47 186-228 (271)
131 PF07652 Flavi_DEAD: Flaviviru 96.3 0.0099 2.1E-07 40.9 4.8 68 15-86 72-140 (148)
132 TIGR00596 rad1 DNA repair prot 96.2 0.025 5.4E-07 49.6 8.1 67 15-83 7-73 (814)
133 KOG4150 Predicted ATP-dependen 96.2 0.084 1.8E-06 44.3 10.4 147 10-158 379-545 (1034)
134 COG1198 PriA Primosomal protei 95.8 0.18 3.9E-06 43.8 11.3 131 11-152 292-434 (730)
135 KOG0952 DNA/RNA helicase MER3/ 95.5 0.003 6.4E-08 55.6 -0.6 50 15-66 1020-1071(1230)
136 PF00176 SNF2_N: SNF2 family N 95.4 0.058 1.3E-06 41.2 6.2 59 14-82 106-172 (299)
137 cd01524 RHOD_Pyr_redox Member 95.0 0.045 9.7E-07 34.3 4.0 37 138-174 51-87 (90)
138 smart00450 RHOD Rhodanese Homo 95.0 0.055 1.2E-06 33.9 4.4 40 135-174 53-93 (100)
139 cd01523 RHOD_Lact_B Member of 94.8 0.044 9.6E-07 35.0 3.5 38 137-174 60-97 (100)
140 KOG0384 Chromodomain-helicase 94.8 0.15 3.3E-06 46.1 7.6 40 138-177 699-738 (1373)
141 KOG1000 Chromatin remodeling p 94.7 0.69 1.5E-05 38.4 10.7 40 138-177 492-531 (689)
142 TIGR03117 cas_csf4 CRISPR-asso 94.7 0.058 1.3E-06 46.1 4.9 41 13-53 180-220 (636)
143 KOG1123 RNA polymerase II tran 94.3 0.24 5.3E-06 41.0 7.3 59 13-83 388-459 (776)
144 PRK12898 secA preprotein trans 94.3 0.044 9.6E-07 46.9 3.2 45 8-52 185-255 (656)
145 KOG0387 Transcription-coupled 93.9 1.1 2.3E-05 39.3 10.6 55 123-177 529-586 (923)
146 cd01529 4RHOD_Repeats Member o 93.9 0.14 3E-06 32.4 4.3 38 136-173 54-92 (96)
147 cd01518 RHOD_YceA Member of th 93.8 0.12 2.5E-06 33.1 4.0 38 136-173 59-97 (101)
148 PF06733 DEAD_2: DEAD_2; Inte 93.4 0.059 1.3E-06 38.2 2.1 43 11-54 115-160 (174)
149 PF13872 AAA_34: P-loop contai 93.3 0.17 3.6E-06 39.2 4.5 45 42-88 175-226 (303)
150 cd01521 RHOD_PspE2 Member of t 93.3 0.16 3.5E-06 33.0 4.0 37 137-173 63-101 (110)
151 cd01534 4RHOD_Repeat_3 Member 93.2 0.13 2.8E-06 32.5 3.3 36 138-173 56-91 (95)
152 cd01526 RHOD_ThiF Member of th 93.2 0.11 2.4E-06 34.5 3.2 37 137-173 71-109 (122)
153 cd01533 4RHOD_Repeat_2 Member 93.1 0.25 5.4E-06 32.0 4.7 38 137-174 65-104 (109)
154 PRK12326 preprotein translocas 93.0 1 2.2E-05 39.2 9.2 93 75-171 365-460 (764)
155 cd00158 RHOD Rhodanese Homolog 92.9 0.23 4.9E-06 30.4 4.1 39 135-173 47-86 (89)
156 PRK06893 DNA replication initi 92.9 0.13 2.7E-06 38.3 3.4 49 37-85 89-137 (229)
157 cd01527 RHOD_YgaP Member of th 92.9 0.22 4.8E-06 31.5 4.1 37 137-173 53-90 (99)
158 cd01449 TST_Repeat_2 Thiosulfa 92.8 0.25 5.4E-06 32.4 4.4 37 137-173 77-114 (118)
159 cd01519 RHOD_HSP67B2 Member of 92.8 0.16 3.5E-06 32.6 3.4 37 137-173 65-102 (106)
160 cd01448 TST_Repeat_1 Thiosulfa 92.7 0.23 4.9E-06 32.9 4.1 39 136-174 77-117 (122)
161 cd01520 RHOD_YbbB Member of th 92.6 0.17 3.7E-06 34.0 3.4 38 137-174 85-123 (128)
162 cd01532 4RHOD_Repeat_1 Member 92.6 0.22 4.7E-06 31.3 3.7 36 138-173 50-88 (92)
163 cd01528 RHOD_2 Member of the R 92.4 0.25 5.4E-06 31.5 3.9 38 137-174 57-95 (101)
164 cd01525 RHOD_Kc Member of the 92.4 0.32 6.9E-06 31.1 4.4 36 138-173 65-101 (105)
165 cd01444 GlpE_ST GlpE sulfurtra 92.2 0.26 5.7E-06 30.9 3.8 37 137-173 55-92 (96)
166 TIGR01407 dinG_rel DnaQ family 92.1 1.4 3.1E-05 39.3 9.4 40 13-52 414-453 (850)
167 TIGR01407 dinG_rel DnaQ family 92.0 0.22 4.8E-06 44.3 4.2 24 137-160 673-696 (850)
168 PF05872 DUF853: Bacterial pro 91.9 0.33 7.1E-06 39.8 4.7 47 35-81 250-299 (502)
169 cd01447 Polysulfide_ST Polysul 91.6 0.21 4.5E-06 31.8 2.8 37 137-173 60-97 (103)
170 PRK14087 dnaA chromosomal repl 91.5 0.31 6.8E-06 40.1 4.3 79 7-85 163-252 (450)
171 smart00489 DEXDc3 DEAD-like he 91.4 0.21 4.6E-06 38.6 3.2 40 13-53 209-250 (289)
172 smart00488 DEXDc2 DEAD-like he 91.4 0.21 4.6E-06 38.6 3.2 40 13-53 209-250 (289)
173 PRK12903 secA preprotein trans 91.4 0.96 2.1E-05 40.1 7.2 51 121-171 407-459 (925)
174 PRK12422 chromosomal replicati 91.2 0.55 1.2E-05 38.6 5.5 74 14-87 168-250 (445)
175 PF11019 DUF2608: Protein of u 91.1 3.7 8E-05 31.1 9.5 110 60-169 85-209 (252)
176 PRK05642 DNA replication initi 90.9 0.3 6.4E-06 36.5 3.4 48 37-85 95-142 (234)
177 PF07517 SecA_DEAD: SecA DEAD- 90.9 0.26 5.7E-06 37.6 3.1 40 15-54 166-212 (266)
178 PRK08727 hypothetical protein; 90.6 0.38 8.2E-06 35.9 3.8 71 14-85 68-138 (233)
179 cd01535 4RHOD_Repeat_4 Member 90.3 1.1 2.4E-05 30.9 5.6 37 137-173 48-85 (145)
180 PRK05320 rhodanese superfamily 90.3 0.64 1.4E-05 35.4 4.8 37 137-173 174-211 (257)
181 KOG0921 Dosage compensation co 90.1 0.64 1.4E-05 41.3 5.1 44 17-63 474-517 (1282)
182 PRK07246 bifunctional ATP-depe 90.0 0.52 1.1E-05 41.8 4.7 41 11-52 409-449 (820)
183 PRK08074 bifunctional ATP-depe 89.6 0.53 1.1E-05 42.4 4.4 40 13-52 429-468 (928)
184 PRK14088 dnaA chromosomal repl 89.2 1.3 2.7E-05 36.5 6.0 75 14-88 159-243 (440)
185 PF02463 SMC_N: RecF/RecN/SMC 89.0 0.34 7.3E-06 35.6 2.4 40 38-79 157-196 (220)
186 PRK11747 dinG ATP-dependent DN 88.9 0.66 1.4E-05 40.4 4.4 40 13-52 217-259 (697)
187 PRK14873 primosome assembly pr 88.9 9.1 0.0002 33.4 11.1 71 11-88 236-309 (665)
188 PF13086 AAA_11: AAA domain; P 88.7 0.4 8.7E-06 34.9 2.6 39 11-53 166-206 (236)
189 PRK00162 glpE thiosulfate sulf 88.6 0.73 1.6E-05 29.7 3.5 37 137-173 57-94 (108)
190 KOG0964 Structural maintenance 88.4 0.25 5.4E-06 43.7 1.5 50 42-95 1122-1171(1200)
191 cd01522 RHOD_1 Member of the R 88.1 0.82 1.8E-05 30.1 3.6 38 137-174 63-101 (117)
192 PF00308 Bac_DnaA: Bacterial d 88.0 0.28 6E-06 36.3 1.4 114 7-136 56-182 (219)
193 PLN02160 thiosulfate sulfurtra 88.0 0.87 1.9E-05 31.0 3.7 37 137-173 80-117 (136)
194 PF13401 AAA_22: AAA domain; P 88.0 2.2 4.9E-05 28.1 5.8 35 41-79 89-123 (131)
195 PRK14086 dnaA chromosomal repl 88.0 0.92 2E-05 38.8 4.5 80 6-85 335-423 (617)
196 PRK06526 transposase; Provisio 87.9 1.9 4E-05 32.8 5.8 70 13-83 124-202 (254)
197 CHL00122 secA preprotein trans 87.9 2.9 6.3E-05 37.2 7.5 51 121-171 405-457 (870)
198 PRK10287 thiosulfate:cyanide s 87.8 2.1 4.6E-05 27.7 5.3 36 138-173 60-95 (104)
199 PRK01415 hypothetical protein; 87.6 1.1 2.4E-05 33.8 4.4 38 136-173 169-207 (247)
200 PRK00149 dnaA chromosomal repl 87.5 1.9 4.1E-05 35.5 6.1 69 15-84 178-255 (450)
201 PF13177 DNA_pol3_delta2: DNA 87.3 1.4 2.9E-05 31.0 4.5 65 14-82 66-142 (162)
202 PF09848 DUF2075: Uncharacteri 87.2 1.6 3.5E-05 34.7 5.3 120 37-168 81-223 (352)
203 cd01445 TST_Repeats Thiosulfat 86.6 1.9 4.1E-05 29.4 4.8 49 125-173 82-134 (138)
204 KOG0989 Replication factor C, 86.4 1.4 3E-05 34.4 4.4 54 37-93 127-183 (346)
205 TIGR03865 PQQ_CXXCW PQQ-depend 86.1 1.2 2.5E-05 31.4 3.6 38 136-173 114-153 (162)
206 PF15586 Imm47: Immunity prote 85.9 1 2.2E-05 29.9 3.0 49 14-67 43-91 (116)
207 TIGR00362 DnaA chromosomal rep 85.9 1.2 2.7E-05 36.0 4.1 70 15-85 166-244 (405)
208 PRK12902 secA preprotein trans 85.8 4.2 9.1E-05 36.4 7.4 51 121-171 420-472 (939)
209 KOG0389 SNF2 family DNA-depend 85.8 3.3 7.3E-05 36.4 6.7 74 13-91 497-572 (941)
210 PF00581 Rhodanese: Rhodanese- 85.8 2.3 4.9E-05 27.1 4.7 36 138-173 67-108 (113)
211 COG1199 DinG Rad3-related DNA 85.7 7.5 0.00016 33.6 9.0 47 125-172 467-514 (654)
212 PRK13103 secA preprotein trans 85.6 0.75 1.6E-05 40.9 2.9 49 123-171 432-482 (913)
213 TIGR02981 phageshock_pspE phag 85.6 3.5 7.6E-05 26.5 5.4 36 138-173 58-93 (101)
214 PRK08084 DNA replication initi 85.2 0.87 1.9E-05 34.0 2.8 47 38-85 96-143 (235)
215 cd01530 Cdc25 Cdc25 phosphatas 85.2 1.1 2.4E-05 29.7 3.0 38 137-174 67-118 (121)
216 PRK00142 putative rhodanese-re 85.0 1.6 3.5E-05 34.2 4.2 38 136-173 169-207 (314)
217 PRK06835 DNA replication prote 84.6 4.5 9.8E-05 32.0 6.6 73 11-84 207-290 (329)
218 KOG2170 ATPase of the AAA+ sup 84.6 1.5 3.3E-05 34.1 3.8 56 37-95 176-238 (344)
219 PF10100 DUF2338: Uncharacteri 84.6 4.7 0.0001 32.7 6.6 58 44-102 80-143 (429)
220 KOG2228 Origin recognition com 84.6 7.3 0.00016 31.1 7.5 90 3-93 97-190 (408)
221 PF05621 TniB: Bacterial TniB 84.3 1 2.2E-05 35.0 2.8 41 37-78 143-184 (302)
222 TIGR00604 rad3 DNA repair heli 84.1 10 0.00023 33.2 9.2 26 137-162 521-546 (705)
223 KOG0354 DEAD-box like helicase 83.9 2.3 5.1E-05 37.0 5.0 50 122-171 393-449 (746)
224 PRK12899 secA preprotein trans 83.5 7.1 0.00015 35.3 7.8 47 5-53 175-229 (970)
225 PRK08181 transposase; Validate 83.2 5.2 0.00011 30.7 6.2 71 13-85 132-211 (269)
226 COG0607 PspE Rhodanese-related 83.1 1.4 3.1E-05 28.1 2.8 38 136-173 59-97 (110)
227 COG1054 Predicted sulfurtransf 82.6 3.7 8.1E-05 31.8 5.2 82 91-172 121-207 (308)
228 KOG1132 Helicase of the DEAD s 82.6 1.3 2.9E-05 39.0 3.1 43 10-53 217-261 (945)
229 PRK07764 DNA polymerase III su 82.4 2.4 5.2E-05 37.7 4.7 43 38-84 119-161 (824)
230 COG1199 DinG Rad3-related DNA 82.3 1.6 3.5E-05 37.6 3.6 41 14-54 193-235 (654)
231 PRK08116 hypothetical protein; 82.0 7.4 0.00016 29.7 6.7 72 15-86 142-225 (268)
232 PRK12902 secA preprotein trans 81.8 1.3 2.9E-05 39.4 2.8 39 14-52 173-218 (939)
233 cd01446 DSP_MapKP N-terminal r 81.7 4.3 9.2E-05 27.1 4.8 38 137-174 74-123 (132)
234 PRK13103 secA preprotein trans 81.5 4.9 0.00011 36.0 6.2 37 16-52 172-215 (913)
235 KOG0991 Replication factor C, 81.4 2 4.3E-05 32.5 3.3 39 37-78 111-149 (333)
236 PF13173 AAA_14: AAA domain 81.1 3.4 7.3E-05 27.5 4.2 40 39-83 61-100 (128)
237 PRK11493 sseA 3-mercaptopyruva 81.1 3.1 6.7E-05 31.9 4.4 37 137-173 230-267 (281)
238 PRK11747 dinG ATP-dependent DN 80.8 18 0.00039 31.8 9.3 34 137-171 533-567 (697)
239 KOG0390 DNA repair protein, SN 80.8 33 0.00072 30.5 10.7 76 18-100 357-434 (776)
240 PRK05580 primosome assembly pr 80.6 6.8 0.00015 34.2 6.7 62 116-177 166-230 (679)
241 PLN03025 replication factor C 80.4 3 6.4E-05 32.6 4.2 41 38-82 98-138 (319)
242 PRK12323 DNA polymerase III su 80.4 2.7 5.9E-05 36.4 4.2 40 37-79 122-161 (700)
243 COG4408 Uncharacterized protei 80.0 18 0.00039 28.8 8.0 150 11-176 47-209 (431)
244 PRK08074 bifunctional ATP-depe 79.7 11 0.00024 34.2 7.9 25 137-161 751-775 (928)
245 COG2519 GCD14 tRNA(1-methylade 79.1 23 0.00049 27.0 8.2 112 47-163 94-213 (256)
246 cd00561 CobA_CobO_BtuR ATP:cor 79.1 5.6 0.00012 27.9 4.8 54 37-91 93-147 (159)
247 COG4555 NatA ABC-type Na+ tran 78.7 3.6 7.9E-05 30.4 3.8 54 37-92 149-202 (245)
248 PRK05597 molybdopterin biosynt 78.4 3.3 7.2E-05 33.0 3.9 38 137-174 313-351 (355)
249 TIGR03167 tRNA_sel_U_synt tRNA 78.4 6.7 0.00014 30.8 5.5 36 138-173 74-110 (311)
250 TIGR00604 rad3 DNA repair heli 78.2 1.4 2.9E-05 38.5 1.8 40 13-53 193-234 (705)
251 KOG0018 Structural maintenance 78.2 2.5 5.5E-05 38.1 3.4 34 42-79 1076-1109(1141)
252 TIGR00595 priA primosomal prot 77.7 6 0.00013 33.2 5.4 55 123-177 8-65 (505)
253 PRK07003 DNA polymerase III su 77.6 3 6.6E-05 36.7 3.6 42 38-83 118-159 (830)
254 PHA02544 44 clamp loader, smal 77.5 3.8 8.3E-05 31.7 4.0 40 38-79 99-138 (316)
255 PRK14873 primosome assembly pr 77.1 4.8 0.0001 35.0 4.7 56 123-178 171-230 (665)
256 PF12846 AAA_10: AAA-like doma 76.9 6.4 0.00014 29.8 5.1 31 37-67 218-248 (304)
257 COG0610 Type I site-specific r 76.8 6.9 0.00015 35.6 5.8 61 16-82 351-413 (962)
258 PRK08903 DnaA regulatory inact 76.6 8.6 0.00019 28.3 5.5 44 38-84 89-133 (227)
259 PRK07940 DNA polymerase III su 76.6 12 0.00025 30.5 6.6 68 15-87 84-161 (394)
260 cd01443 Cdc25_Acr2p Cdc25 enzy 76.4 9.8 0.00021 24.6 5.2 37 137-173 65-109 (113)
261 COG1198 PriA Primosomal protei 76.3 4.8 0.0001 35.3 4.5 64 115-178 220-286 (730)
262 COG4152 ABC-type uncharacteriz 75.7 8.5 0.00019 29.4 5.1 159 3-163 105-276 (300)
263 KOG1133 Helicase of the DEAD s 75.3 2.8 6.1E-05 36.3 2.8 34 19-53 326-362 (821)
264 PRK12901 secA preprotein trans 75.2 9.2 0.0002 35.0 6.0 51 121-171 609-661 (1112)
265 PLN02955 8-amino-7-oxononanoat 75.1 3.3 7.2E-05 34.4 3.2 29 141-169 396-424 (476)
266 TIGR00678 holB DNA polymerase 75.1 4.3 9.3E-05 28.9 3.5 39 37-78 94-132 (188)
267 PRK00440 rfc replication facto 75.1 12 0.00026 28.8 6.2 38 39-79 102-139 (319)
268 KOG0990 Replication factor C, 75.0 3.3 7.1E-05 32.6 2.9 37 38-77 130-166 (360)
269 PRK11784 tRNA 2-selenouridine 74.9 5.1 0.00011 31.9 4.0 37 137-173 87-124 (345)
270 TIGR00708 cobA cob(I)alamin ad 74.6 13 0.00029 26.5 5.7 54 37-91 95-149 (173)
271 COG1196 Smc Chromosome segrega 74.4 3.2 6.8E-05 38.5 3.2 68 12-81 1046-1128(1163)
272 PRK14958 DNA polymerase III su 74.1 4.2 9.1E-05 34.2 3.6 38 38-78 118-155 (509)
273 PRK04296 thymidine kinase; Pro 74.1 7.6 0.00017 27.9 4.5 39 38-82 77-115 (190)
274 PRK07399 DNA polymerase III su 74.1 15 0.00032 28.9 6.4 39 38-80 123-161 (314)
275 PLN02723 3-mercaptopyruvate su 74.1 8.6 0.00019 30.2 5.1 47 127-173 255-305 (320)
276 PF13245 AAA_19: Part of AAA d 74.0 9.6 0.00021 23.0 4.3 52 118-170 16-74 (76)
277 COG0593 DnaA ATPase involved i 74.0 9.4 0.0002 31.1 5.4 83 4-87 132-223 (408)
278 PF07999 RHSP: Retrotransposon 74.0 12 0.00026 30.8 6.1 40 14-53 124-173 (439)
279 COG0470 HolB ATPase involved i 74.0 5.6 0.00012 30.7 4.1 43 38-84 108-150 (325)
280 PRK04132 replication factor C 73.8 10 0.00022 34.0 5.9 41 39-83 630-670 (846)
281 PRK14956 DNA polymerase III su 73.7 4.3 9.3E-05 33.8 3.5 28 38-67 120-147 (484)
282 KOG0933 Structural maintenance 73.1 2.9 6.4E-05 37.5 2.5 69 4-80 1075-1143(1174)
283 PRK09112 DNA polymerase III su 73.0 4.4 9.6E-05 32.3 3.3 39 38-79 140-178 (351)
284 PF01637 Arch_ATPase: Archaeal 73.0 4.4 9.6E-05 29.3 3.2 43 41-83 120-166 (234)
285 PRK12377 putative replication 72.2 6.9 0.00015 29.6 4.1 68 13-80 127-204 (248)
286 cd01531 Acr2p Eukaryotic arsen 72.2 23 0.0005 22.8 6.5 37 137-173 61-107 (113)
287 PRK05986 cob(I)alamin adenolsy 72.1 19 0.0004 26.2 6.0 55 37-92 113-168 (191)
288 PRK07276 DNA polymerase III su 72.0 12 0.00026 29.0 5.4 64 15-81 71-143 (290)
289 PRK05600 thiamine biosynthesis 71.7 7.9 0.00017 31.1 4.5 37 137-173 331-369 (370)
290 PRK08762 molybdopterin biosynt 71.6 5.7 0.00012 31.9 3.7 37 137-173 56-93 (376)
291 TIGR00596 rad1 DNA repair prot 71.4 7.6 0.00016 34.6 4.6 39 122-160 268-317 (814)
292 PF09413 DUF2007: Domain of un 71.2 6.4 0.00014 22.9 3.0 32 141-172 2-33 (67)
293 COG3973 Superfamily I DNA and 71.2 26 0.00057 30.3 7.4 83 75-161 591-678 (747)
294 PRK12723 flagellar biosynthesi 71.1 42 0.00091 27.3 8.5 70 20-93 239-309 (388)
295 PRK05707 DNA polymerase III su 70.8 15 0.00032 29.1 5.8 62 15-79 71-143 (328)
296 PRK07952 DNA replication prote 70.7 11 0.00025 28.4 4.9 72 14-85 126-208 (244)
297 cd00268 DEADc DEAD-box helicas 70.7 12 0.00027 26.6 5.1 39 137-175 68-110 (203)
298 PF04273 DUF442: Putative phos 70.6 27 0.00058 22.9 6.1 44 112-156 58-104 (110)
299 PRK08451 DNA polymerase III su 70.5 6.9 0.00015 33.1 4.1 40 37-79 115-154 (535)
300 PRK07411 hypothetical protein; 70.3 7.2 0.00016 31.6 4.0 37 137-173 341-377 (390)
301 PRK07878 molybdopterin biosynt 70.2 7 0.00015 31.6 3.9 37 137-173 342-379 (392)
302 PRK11493 sseA 3-mercaptopyruva 70.1 8.1 0.00018 29.6 4.2 49 125-173 74-124 (281)
303 PF05707 Zot: Zonular occluden 69.9 9.4 0.0002 27.5 4.2 54 39-93 79-136 (193)
304 PRK14952 DNA polymerase III su 69.7 12 0.00026 32.1 5.3 44 37-84 116-159 (584)
305 PRK14961 DNA polymerase III su 69.4 6.2 0.00014 31.5 3.5 38 38-78 118-155 (363)
306 PRK08058 DNA polymerase III su 68.7 16 0.00035 28.7 5.6 61 15-79 77-147 (329)
307 PF00004 AAA: ATPase family as 68.4 8.4 0.00018 25.1 3.5 16 40-55 59-74 (132)
308 COG1660 Predicted P-loop-conta 68.4 8.3 0.00018 29.5 3.7 29 146-174 256-285 (286)
309 PF12340 DUF3638: Protein of u 68.1 7 0.00015 29.2 3.2 41 15-55 130-188 (229)
310 PRK14949 DNA polymerase III su 68.0 8.2 0.00018 34.8 4.1 44 38-85 118-161 (944)
311 COG0466 Lon ATP-dependent Lon 68.0 10 0.00022 33.2 4.5 42 21-66 402-446 (782)
312 PRK07993 DNA polymerase III su 67.9 14 0.00031 29.2 5.2 62 15-80 73-146 (334)
313 PRK14951 DNA polymerase III su 67.8 6.1 0.00013 34.1 3.2 43 38-84 123-165 (618)
314 PRK07414 cob(I)yrinic acid a,c 67.5 29 0.00062 24.9 6.1 53 37-90 113-166 (178)
315 PRK07994 DNA polymerase III su 67.5 6.3 0.00014 34.1 3.3 42 38-83 118-159 (647)
316 TIGR03420 DnaA_homol_Hda DnaA 67.3 4.8 0.0001 29.4 2.3 46 38-84 89-134 (226)
317 PTZ00112 origin recognition co 67.2 14 0.00029 33.7 5.2 41 38-80 868-908 (1164)
318 PRK08769 DNA polymerase III su 67.1 6.8 0.00015 30.8 3.2 41 37-80 111-151 (319)
319 PRK10869 recombination and rep 66.9 6.9 0.00015 33.3 3.4 84 39-134 452-535 (553)
320 PRK14964 DNA polymerase III su 66.8 14 0.0003 31.0 5.0 45 37-85 114-158 (491)
321 PRK09762 galactosamine-6-phosp 66.6 8.3 0.00018 28.8 3.4 36 13-48 27-69 (232)
322 PRK14969 DNA polymerase III su 66.2 8.1 0.00018 32.6 3.7 39 38-79 118-156 (527)
323 COG0553 HepA Superfamily II DN 66.2 17 0.00038 32.2 5.9 54 124-177 692-750 (866)
324 COG0497 RecN ATPase involved i 66.1 8.6 0.00019 32.6 3.7 85 39-135 453-537 (557)
325 KOG0391 SNF2 family DNA-depend 65.9 9.5 0.00021 35.5 4.1 54 123-177 1262-1315(1958)
326 PRK15483 type III restriction- 65.7 9.5 0.00021 34.6 4.1 64 15-84 162-240 (986)
327 PRK14960 DNA polymerase III su 65.7 12 0.00026 32.7 4.6 42 38-83 117-158 (702)
328 PRK07246 bifunctional ATP-depe 65.7 41 0.00089 30.2 8.0 29 137-165 646-674 (820)
329 cd00046 DEXDc DEAD-like helica 65.7 21 0.00045 23.0 5.1 56 120-175 8-70 (144)
330 PLN02723 3-mercaptopyruvate su 65.3 13 0.00028 29.2 4.4 49 125-173 90-140 (320)
331 PRK08691 DNA polymerase III su 64.8 9.9 0.00021 33.3 3.9 39 38-79 118-156 (709)
332 PF01695 IstB_IS21: IstB-like 64.7 3.2 6.9E-05 29.6 0.9 72 11-84 71-151 (178)
333 TIGR02881 spore_V_K stage V sp 64.5 15 0.00033 27.7 4.6 45 41-86 107-155 (261)
334 PRK07471 DNA polymerase III su 64.5 9.3 0.0002 30.7 3.6 41 37-80 139-179 (365)
335 PRK14965 DNA polymerase III su 63.8 15 0.00033 31.4 4.9 43 38-84 118-160 (576)
336 PRK14959 DNA polymerase III su 63.7 13 0.00028 32.1 4.4 44 38-85 118-161 (624)
337 PRK14974 cell division protein 63.7 15 0.00033 29.1 4.6 55 39-94 222-276 (336)
338 cd03239 ABC_SMC_head The struc 63.5 8.9 0.00019 27.3 3.0 43 37-80 114-156 (178)
339 PRK06090 DNA polymerase III su 63.4 22 0.00048 28.0 5.4 64 15-81 73-147 (319)
340 PF13514 AAA_27: AAA domain 63.1 14 0.00029 34.3 4.7 56 42-101 1054-1109(1111)
341 PF02572 CobA_CobO_BtuR: ATP:c 62.9 20 0.00043 25.6 4.6 54 37-91 94-148 (172)
342 PF13304 AAA_21: AAA domain; P 62.8 8.3 0.00018 28.0 2.9 42 41-85 259-300 (303)
343 PRK12903 secA preprotein trans 62.7 5.7 0.00012 35.5 2.2 38 15-52 167-211 (925)
344 TIGR00067 glut_race glutamate 62.7 27 0.00058 26.5 5.6 81 17-97 107-197 (251)
345 TIGR00634 recN DNA repair prot 62.4 8.7 0.00019 32.7 3.2 84 39-134 462-545 (563)
346 TIGR03817 DECH_helic helicase/ 62.2 13 0.00028 32.9 4.3 41 137-177 80-123 (742)
347 KOG1002 Nucleotide excision re 61.9 6.8 0.00015 32.9 2.3 54 124-177 620-677 (791)
348 KOG0390 DNA repair protein, SN 61.6 14 0.00031 32.6 4.4 54 123-177 577-634 (776)
349 COG2109 BtuR ATP:corrinoid ade 60.7 33 0.00072 25.0 5.4 54 38-92 121-175 (198)
350 PRK12402 replication factor C 59.9 14 0.0003 28.8 3.7 42 38-83 124-165 (337)
351 KOG0391 SNF2 family DNA-depend 59.9 13 0.00027 34.8 3.7 64 11-81 710-774 (1958)
352 PRK05728 DNA polymerase III su 59.7 32 0.0007 23.5 5.1 38 121-158 10-49 (142)
353 PRK06871 DNA polymerase III su 59.6 12 0.00025 29.7 3.2 64 14-80 72-145 (325)
354 CHL00181 cbbX CbbX; Provisiona 59.5 25 0.00054 27.2 5.0 47 41-88 124-175 (287)
355 PRK14957 DNA polymerase III su 59.3 13 0.00029 31.6 3.7 39 38-79 118-156 (546)
356 KOG0347 RNA helicase [RNA proc 59.2 11 0.00024 32.1 3.1 35 140-174 265-303 (731)
357 PRK05563 DNA polymerase III su 59.1 15 0.00033 31.3 4.1 44 37-84 117-160 (559)
358 PTZ00209 retrotransposon hot s 58.9 1.1E+02 0.0023 26.9 8.8 35 127-161 284-318 (693)
359 PHA03368 DNA packaging termina 58.5 15 0.00032 32.2 3.8 42 38-84 351-392 (738)
360 PRK10536 hypothetical protein; 58.5 18 0.00039 27.6 4.0 42 28-78 168-209 (262)
361 PF13604 AAA_30: AAA domain; P 58.5 21 0.00046 25.8 4.3 40 37-81 91-130 (196)
362 PRK11634 ATP-dependent RNA hel 58.3 18 0.00039 31.3 4.4 38 137-174 73-115 (629)
363 PRK00411 cdc6 cell division co 57.8 17 0.00037 29.1 4.0 28 39-67 138-165 (394)
364 PRK06620 hypothetical protein; 57.8 14 0.0003 27.2 3.2 42 39-85 85-126 (214)
365 PF11823 DUF3343: Protein of u 57.6 29 0.00063 20.6 4.1 29 140-168 3-31 (73)
366 PRK06964 DNA polymerase III su 57.4 14 0.0003 29.4 3.4 42 37-81 130-171 (342)
367 PRK13341 recombination factor 57.3 18 0.0004 31.9 4.4 40 39-85 109-148 (725)
368 cd04908 ACT_Bt0572_1 N-termina 56.9 36 0.00077 19.5 5.7 52 114-166 3-65 (66)
369 PRK09111 DNA polymerase III su 56.2 22 0.00048 30.6 4.6 40 37-79 130-169 (598)
370 PRK05818 DNA polymerase III su 55.7 29 0.00063 26.6 4.7 63 15-80 54-126 (261)
371 PF08704 GCD14: tRNA methyltra 55.7 23 0.0005 26.8 4.1 108 52-163 45-164 (247)
372 COG1474 CDC6 Cdc6-related prot 55.6 62 0.0013 26.1 6.8 45 37-83 121-165 (366)
373 PF10740 DUF2529: Protein of u 55.3 16 0.00034 26.0 3.0 32 138-169 82-115 (172)
374 PRK13342 recombination factor 55.2 33 0.00072 27.9 5.3 37 39-82 92-128 (413)
375 cd00009 AAA The AAA+ (ATPases 54.7 20 0.00043 23.3 3.4 29 37-67 82-110 (151)
376 COG4889 Predicted helicase [Ge 54.5 12 0.00027 33.8 2.8 39 14-52 279-317 (1518)
377 PRK09629 bifunctional thiosulf 54.4 27 0.00058 30.2 4.8 46 128-173 210-259 (610)
378 TIGR02673 FtsE cell division A 54.3 9.9 0.00021 27.6 2.0 50 37-88 153-202 (214)
379 PRK04195 replication factor C 54.2 18 0.00039 30.1 3.7 15 39-53 98-112 (482)
380 PF13361 UvrD_C: UvrD-like hel 54.2 88 0.0019 24.0 7.5 55 116-171 50-109 (351)
381 PRK10917 ATP-dependent DNA hel 54.1 35 0.00075 29.9 5.5 40 138-177 310-353 (681)
382 PRK05917 DNA polymerase III su 54.1 18 0.00039 28.1 3.4 41 38-81 94-134 (290)
383 PF04364 DNA_pol3_chi: DNA pol 54.0 44 0.00096 22.7 5.0 33 126-158 15-49 (137)
384 TIGR02746 TraC-F-type type-IV 53.9 20 0.00043 31.8 4.1 31 37-67 635-667 (797)
385 KOG0330 ATP-dependent RNA heli 53.9 38 0.00082 27.7 5.1 49 126-174 117-169 (476)
386 KOG0392 SNF2 family DNA-depend 53.4 51 0.0011 31.1 6.4 39 139-177 1341-1382(1549)
387 PRK14953 DNA polymerase III su 53.4 19 0.0004 30.2 3.7 28 38-67 118-145 (486)
388 PRK06581 DNA polymerase III su 53.3 43 0.00093 25.6 5.1 64 14-80 49-127 (263)
389 TIGR01447 recD exodeoxyribonuc 53.0 25 0.00055 30.2 4.4 37 37-79 257-293 (586)
390 TIGR03117 cas_csf4 CRISPR-asso 53.0 1.6E+02 0.0034 25.8 9.9 46 126-172 459-504 (636)
391 PRK07413 hypothetical protein; 52.9 45 0.00097 27.1 5.5 61 24-91 295-358 (382)
392 PRK06646 DNA polymerase III su 52.8 55 0.0012 22.8 5.4 42 116-158 6-49 (154)
393 PRK14955 DNA polymerase III su 52.5 32 0.00069 27.9 4.8 39 37-78 125-163 (397)
394 PF13344 Hydrolase_6: Haloacid 52.5 26 0.00056 22.4 3.5 35 130-165 23-58 (101)
395 PRK10865 protein disaggregatio 52.4 20 0.00043 32.3 3.8 46 41-87 273-320 (857)
396 cd01132 F1_ATPase_alpha F1 ATP 52.3 53 0.0012 25.3 5.7 48 127-174 114-172 (274)
397 cd03278 ABC_SMC_barmotin Barmo 52.3 22 0.00048 25.7 3.5 39 38-78 134-172 (197)
398 cd01120 RecA-like_NTPases RecA 52.0 14 0.00031 24.8 2.5 45 38-83 84-137 (165)
399 TIGR02169 SMC_prok_A chromosom 51.4 15 0.00033 33.8 3.1 42 38-81 1095-1136(1164)
400 KOG1001 Helicase-like transcri 51.3 37 0.0008 29.8 5.2 68 14-91 233-302 (674)
401 TIGR01198 pgl 6-phosphoglucono 51.3 17 0.00038 27.1 2.9 141 15-159 29-202 (233)
402 PRK06921 hypothetical protein; 51.2 23 0.00049 27.1 3.6 70 15-85 146-227 (266)
403 PRK14963 DNA polymerase III su 51.1 22 0.00048 29.9 3.7 17 37-53 114-130 (504)
404 PRK09087 hypothetical protein; 51.0 24 0.00051 26.2 3.6 40 41-84 89-128 (226)
405 PRK06305 DNA polymerase III su 50.6 17 0.00038 30.0 3.0 38 38-78 120-157 (451)
406 PRK11034 clpA ATP-dependent Cl 50.4 21 0.00046 31.7 3.6 45 41-86 280-327 (758)
407 PRK09629 bifunctional thiosulf 50.4 29 0.00063 30.0 4.4 50 124-173 67-118 (610)
408 PF08901 DUF1847: Protein of u 50.1 41 0.00089 23.6 4.3 46 123-168 40-87 (157)
409 TIGR02397 dnaX_nterm DNA polym 50.1 19 0.00042 28.3 3.2 18 38-55 116-133 (355)
410 PRK14962 DNA polymerase III su 49.9 21 0.00046 29.8 3.4 18 38-55 116-133 (472)
411 COG1135 AbcC ABC-type metal io 49.8 38 0.00082 26.8 4.5 123 38-174 158-300 (339)
412 TIGR01389 recQ ATP-dependent D 49.3 25 0.00054 30.1 3.9 39 138-176 53-91 (591)
413 TIGR00643 recG ATP-dependent D 49.3 44 0.00096 29.0 5.4 40 138-177 284-327 (630)
414 PRK11776 ATP-dependent RNA hel 49.0 40 0.00088 27.7 5.0 37 139-175 73-114 (460)
415 cd03275 ABC_SMC1_euk Eukaryoti 48.5 27 0.00058 26.1 3.6 41 39-80 177-217 (247)
416 TIGR03346 chaperone_ClpB ATP-d 48.5 27 0.00059 31.5 4.1 48 39-87 266-315 (852)
417 cd03273 ABC_SMC2_euk Eukaryoti 48.4 26 0.00056 26.3 3.5 42 38-81 187-228 (251)
418 PRK14971 DNA polymerase III su 48.4 24 0.00051 30.6 3.6 42 37-82 119-160 (614)
419 cd03263 ABC_subfamily_A The AB 48.3 24 0.00052 25.6 3.3 50 37-89 149-198 (220)
420 PF02562 PhoH: PhoH-like prote 48.2 34 0.00073 25.2 3.9 33 41-79 121-153 (205)
421 cd05212 NAD_bind_m-THF_DH_Cycl 48.1 82 0.0018 21.5 5.6 46 127-172 13-62 (140)
422 PF12689 Acid_PPase: Acid Phos 48.1 98 0.0021 22.0 8.4 120 43-175 35-157 (169)
423 PRK14970 DNA polymerase III su 48.0 25 0.00054 28.0 3.5 17 37-53 106-122 (367)
424 PRK14701 reverse gyrase; Provi 48.0 53 0.0011 32.1 6.0 40 137-176 121-166 (1638)
425 PRK14950 DNA polymerase III su 47.7 33 0.00072 29.4 4.4 41 37-81 118-158 (585)
426 PRK14948 DNA polymerase III su 47.7 26 0.00057 30.3 3.8 28 38-67 120-147 (620)
427 cd03274 ABC_SMC4_euk Eukaryoti 47.5 26 0.00057 25.6 3.3 39 39-79 149-187 (212)
428 PRK12900 secA preprotein trans 47.5 8.5 0.00018 35.0 0.8 39 14-52 226-271 (1025)
429 PRK08699 DNA polymerase III su 47.3 83 0.0018 24.9 6.2 40 37-79 111-150 (325)
430 PF03668 ATP_bind_2: P-loop AT 47.3 21 0.00044 27.7 2.8 30 146-175 255-284 (284)
431 KOG1513 Nuclear helicase MOP-3 47.1 28 0.0006 31.3 3.7 39 41-81 407-453 (1300)
432 cd03028 GRX_PICOT_like Glutare 46.9 45 0.00098 20.6 3.9 31 138-168 7-43 (90)
433 PF05221 AdoHcyase: S-adenosyl 46.7 48 0.001 25.5 4.6 57 118-174 48-104 (268)
434 COG1131 CcmA ABC-type multidru 46.6 19 0.00042 27.8 2.6 53 37-91 152-205 (293)
435 TIGR00614 recQ_fam ATP-depende 46.6 29 0.00063 28.8 3.8 38 138-175 51-88 (470)
436 KOG0392 SNF2 family DNA-depend 46.6 29 0.00062 32.6 3.8 35 14-53 1077-1114(1549)
437 KOG1015 Transcription regulato 46.6 24 0.00052 32.4 3.3 45 38-86 820-864 (1567)
438 TIGR01448 recD_rel helicase, p 46.1 37 0.0008 30.0 4.5 36 38-79 415-450 (720)
439 PRK06645 DNA polymerase III su 46.1 29 0.00064 29.2 3.7 19 37-55 126-144 (507)
440 COG2812 DnaX DNA polymerase II 46.0 21 0.00046 30.1 2.8 19 37-55 117-135 (515)
441 PF12710 HAD: haloacid dehalog 45.9 83 0.0018 21.9 5.7 96 57-154 90-191 (192)
442 PF11496 HDA2-3: Class II hist 45.9 89 0.0019 24.4 6.1 54 123-176 95-155 (297)
443 cd00401 AdoHcyase S-adenosyl-L 45.7 67 0.0014 26.4 5.6 57 118-174 41-97 (413)
444 cd03240 ABC_Rad50 The catalyti 45.7 27 0.00059 25.3 3.1 41 38-80 138-181 (204)
445 PRK04841 transcriptional regul 45.7 28 0.00061 31.1 3.8 45 38-84 120-164 (903)
446 PF03354 Terminase_1: Phage Te 45.6 31 0.00067 28.7 3.8 42 34-78 118-159 (477)
447 cd00267 ABC_ATPase ABC (ATP-bi 45.5 30 0.00065 23.7 3.2 49 38-88 97-145 (157)
448 cd03225 ABC_cobalt_CbiO_domain 45.4 15 0.00033 26.5 1.8 50 37-88 150-199 (211)
449 KOG0740 AAA+-type ATPase [Post 45.1 55 0.0012 27.0 5.0 61 38-98 244-315 (428)
450 PRK11264 putative amino-acid A 45.0 19 0.00042 26.8 2.4 51 37-89 160-210 (250)
451 COG2909 MalT ATP-dependent tra 44.7 44 0.00095 30.1 4.6 46 37-84 127-172 (894)
452 cd03216 ABC_Carb_Monos_I This 44.6 28 0.0006 24.2 3.0 50 37-88 98-147 (163)
453 PRK13766 Hef nuclease; Provisi 44.5 72 0.0016 28.3 6.1 42 136-177 56-101 (773)
454 cd03269 ABC_putative_ATPase Th 44.5 20 0.00044 25.9 2.3 51 37-89 144-194 (210)
455 PRK05564 DNA polymerase III su 44.4 25 0.00054 27.4 2.9 39 37-78 91-129 (313)
456 PRK07132 DNA polymerase III su 44.4 65 0.0014 25.1 5.2 40 38-80 89-128 (299)
457 cd03215 ABC_Carb_Monos_II This 44.4 27 0.00059 24.6 3.0 50 37-88 120-169 (182)
458 cd03276 ABC_SMC6_euk Eukaryoti 44.2 19 0.00041 26.1 2.1 49 37-86 129-179 (198)
459 cd01538 PBP1_ABC_xylose_bindin 44.2 57 0.0012 24.6 4.9 39 126-164 177-215 (288)
460 cd03229 ABC_Class3 This class 44.1 23 0.0005 24.9 2.5 50 37-88 116-166 (178)
461 TIGR00929 VirB4_CagE type IV s 44.0 17 0.00037 32.1 2.2 29 39-67 629-657 (785)
462 TIGR02880 cbbX_cfxQ probable R 43.9 48 0.001 25.5 4.4 48 41-88 123-174 (284)
463 PRK07133 DNA polymerase III su 43.9 45 0.00098 29.5 4.6 43 38-84 117-159 (725)
464 TIGR00936 ahcY adenosylhomocys 43.1 63 0.0014 26.5 5.1 56 119-174 38-93 (406)
465 cd00860 ThrRS_anticodon ThrRS 43.1 41 0.00089 20.3 3.3 12 159-170 48-59 (91)
466 PF02617 ClpS: ATP-dependent C 43.0 41 0.00089 20.5 3.2 25 138-162 47-71 (82)
467 TIGR01277 thiQ thiamine ABC tr 43.0 16 0.00036 26.5 1.7 51 37-88 144-194 (213)
468 TIGR02928 orc1/cdc6 family rep 42.9 36 0.00078 26.9 3.7 15 39-53 129-143 (365)
469 cd06280 PBP1_LacI_like_4 Ligan 42.6 70 0.0015 23.6 5.1 38 125-163 159-196 (263)
470 smart00382 AAA ATPases associa 42.5 69 0.0015 20.3 4.6 16 40-55 79-94 (148)
471 cd03226 ABC_cobalt_CbiO_domain 42.2 26 0.00056 25.2 2.6 49 37-87 142-190 (205)
472 PHA00012 I assembly protein 42.1 1.6E+02 0.0034 23.7 6.9 20 36-55 78-97 (361)
473 COG1875 NYN ribonuclease and A 41.8 39 0.00085 27.4 3.6 72 23-100 325-416 (436)
474 PRK06647 DNA polymerase III su 41.7 51 0.0011 28.2 4.6 29 37-67 117-145 (563)
475 cd03300 ABC_PotA_N PotA is an 41.7 14 0.00031 27.2 1.2 51 37-89 146-197 (232)
476 TIGR00963 secA preprotein tran 41.6 72 0.0016 28.4 5.4 51 127-177 86-140 (745)
477 TIGR02168 SMC_prok_B chromosom 41.2 34 0.00075 31.4 3.7 42 38-81 1110-1151(1179)
478 COG0560 SerB Phosphoserine pho 41.2 1.4E+02 0.0031 21.9 7.7 91 61-155 82-177 (212)
479 COG0513 SrmB Superfamily II DN 41.0 62 0.0013 27.3 4.9 36 141-176 102-142 (513)
480 PF05127 Helicase_RecD: Helica 40.8 36 0.00078 24.4 3.0 35 40-84 91-125 (177)
481 PRK13543 cytochrome c biogenes 40.6 21 0.00047 25.9 2.0 51 37-89 153-203 (214)
482 PRK13536 nodulation factor exp 40.5 18 0.0004 28.6 1.7 54 37-92 188-241 (340)
483 PRK08939 primosomal protein Dn 40.5 43 0.00094 26.2 3.7 71 13-84 182-262 (306)
484 PRK09280 F0F1 ATP synthase sub 40.4 83 0.0018 26.3 5.4 50 125-174 188-249 (463)
485 KOG2004 Mitochondrial ATP-depe 40.4 62 0.0013 28.8 4.8 31 19-53 488-519 (906)
486 COG0653 SecA Preprotein transl 40.4 87 0.0019 28.2 5.7 50 121-170 410-461 (822)
487 cd06287 PBP1_LacI_like_8 Ligan 40.4 64 0.0014 24.2 4.6 37 126-163 166-202 (269)
488 PRK09281 F0F1 ATP synthase sub 40.2 1.4E+02 0.003 25.3 6.8 47 128-174 208-265 (502)
489 PF02863 Arg_repressor_C: Argi 40.1 44 0.00096 19.7 2.9 23 138-160 47-69 (70)
490 PRK09493 glnQ glutamine ABC tr 40.0 22 0.00047 26.4 1.9 50 37-88 152-201 (240)
491 PF03853 YjeF_N: YjeF-related 39.9 58 0.0013 22.9 4.0 30 138-167 25-57 (169)
492 cd03260 ABC_PstB_phosphate_tra 39.9 26 0.00055 25.7 2.3 49 37-88 157-205 (227)
493 cd03213 ABCG_EPDR ABCG transpo 39.9 26 0.00057 25.1 2.3 45 37-83 127-171 (194)
494 cd01979 Pchlide_reductase_N Pc 39.8 2E+02 0.0044 23.3 9.2 146 11-166 23-184 (396)
495 cd03218 ABC_YhbG The ABC trans 39.7 21 0.00046 26.2 1.8 51 37-89 149-199 (232)
496 TIGR03522 GldA_ABC_ATP gliding 39.6 27 0.00059 27.0 2.5 53 37-92 149-201 (301)
497 cd01400 6PGL 6PGL: 6-Phosphogl 39.5 31 0.00067 25.4 2.6 149 15-168 24-208 (219)
498 PRK13889 conjugal transfer rel 39.4 84 0.0018 29.0 5.7 40 36-80 430-469 (988)
499 PRK10875 recD exonuclease V su 39.4 50 0.0011 28.7 4.2 37 37-79 263-299 (615)
500 TIGR03191 benz_CoA_bzdO benzoy 39.4 1.1E+02 0.0025 25.2 6.1 54 121-174 345-403 (430)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-39 Score=235.94 Aligned_cols=172 Identities=27% Similarity=0.363 Sum_probs=164.7
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
++-+-.+.+.-|++++.|||||++++++++++..+.++++|+||||.|++.| |.+++.+|.++ +|+..|++++|||+|
T Consensus 134 n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg-fk~Qiydiyr~-lp~~~Qvv~~SATlp 211 (400)
T KOG0328|consen 134 NLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG-FKEQIYDIYRY-LPPGAQVVLVSATLP 211 (400)
T ss_pred ccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh-HHHHHHHHHHh-CCCCceEEEEeccCc
Confidence 3444556677899999999999999999999999999999999999999999 99999999999 899999999999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.++.+..++|+.||..+.+.+++.+..+++|+|+.+..++.|++.|+++.+.....+++|||||++.+++|.+.|.+..+
T Consensus 212 ~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 212 HEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred HHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
.+.++||+|+|+||
T Consensus 292 tVssmHGDm~qkER 305 (400)
T KOG0328|consen 292 TVSSMHGDMEQKER 305 (400)
T ss_pred eeeeccCCcchhHH
Confidence 99999999999998
No 2
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-37 Score=250.61 Aligned_cols=171 Identities=36% Similarity=0.496 Sum_probs=161.2
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...|.+.++.++||||||||||++++.++.++++.++++|+||||.|++.| |.+++..|+.. .+.++|+++||||+|.
T Consensus 140 ~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G-f~~~i~~I~~~-~p~~~qtllfSAT~~~ 217 (513)
T COG0513 140 IRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG-FIDDIEKILKA-LPPDRQTLLFSATMPD 217 (513)
T ss_pred HHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC-CHHHHHHHHHh-CCcccEEEEEecCCCH
Confidence 467888888899999999999999999999999999999999999999999 99999999999 7889999999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCcc--ccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 85 FVEELARSIMHDAVRVIVGRKNT--ASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
.+..+...++.+|..+.+..... ....+.|+++.+.+..+|...|..+++.....++||||+|+..|+.++..|...|
T Consensus 218 ~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g 297 (513)
T COG0513 218 DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG 297 (513)
T ss_pred HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC
Confidence 99999999999999888886655 8899999999987766799999999998888899999999999999999999999
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+++..+||+|+|++|
T Consensus 298 ~~~~~lhG~l~q~~R 312 (513)
T COG0513 298 FKVAALHGDLPQEER 312 (513)
T ss_pred CeEEEecCCCCHHHH
Confidence 999999999999988
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=242.58 Aligned_cols=170 Identities=31% Similarity=0.435 Sum_probs=154.7
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
..|++.++++++|+|||||||.++++.+.++++++.|+|+||||.|+++| |.++++.|++.+.+..+|++++|||||.+
T Consensus 206 ~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG-Fe~qI~~Il~~i~~~~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 206 GPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG-FEPQIRKILSQIPRPDRQTLMFSATWPKE 284 (519)
T ss_pred cHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc-cHHHHHHHHHhcCCCcccEEEEeeeccHH
Confidence 56999999999999999999999999999999999999999999999999 99999999999437778999999999999
Q ss_pred HHHHHHHhccCcEEEEEcCCc--cccCCceEEEEEcCChhhHHHHHHHHHHhc---CCCCEEEEeCCchHHHHHHHHhhh
Q 030396 86 VEELARSIMHDAVRVIVGRKN--TASESIKQKLVFAGSEEGKLLALRQSFAES---LNPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
++.++..|+.+|..+.+.... ....++.|....+ +...|...|..+|... ...|+||||+|++.|+.|+..|+.
T Consensus 285 v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~-~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~ 363 (519)
T KOG0331|consen 285 VRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVC-DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR 363 (519)
T ss_pred HHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhc-CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh
Confidence 999999999999999887553 5556777766555 5778999999999866 466899999999999999999999
Q ss_pred CCCceEeeecCCCcccc
Q 030396 161 DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 161 ~g~~~~~lh~~~~~~~R 177 (178)
.|+++.++||+.+|.||
T Consensus 364 ~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 364 KGWPAVAIHGDKSQSER 380 (519)
T ss_pred cCcceeeecccccHHHH
Confidence 99999999999999998
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=229.96 Aligned_cols=172 Identities=26% Similarity=0.340 Sum_probs=163.2
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHH-cCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIR-RKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~-~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
+.+.|..++.+.|||+|+|||||++++. .+.++++.++++|+||||.++++. |.+.+..|++. +|..+|+++||||+
T Consensus 168 ~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d-F~~~ld~ILk~-ip~erqt~LfsATM 245 (476)
T KOG0330|consen 168 DMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD-FEEELDYILKV-IPRERQTFLFSATM 245 (476)
T ss_pred hHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh-hHHHHHHHHHh-cCccceEEEEEeec
Confidence 4678899999999999999999999998 478899999999999999999999 99999999999 89999999999999
Q ss_pred cHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 83 PDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
|..+.++....+.+|..+.+.....+.+.+.|.|.+++ ...|..+|..+++......+||||||...+++++-.|...|
T Consensus 246 t~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~-~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg 324 (476)
T KOG0330|consen 246 TKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP-GKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG 324 (476)
T ss_pred chhhHHHHhhccCCCeEEeccchhcchHHhhhheEecc-ccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998884 45799999999999989999999999999999999999999
Q ss_pred CceEeeecCCCccccC
Q 030396 163 IRAGVIHSDLSQTQVF 178 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R~ 178 (178)
+.+..+||+|+|..|+
T Consensus 325 ~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 325 FQAIPLHGQMSQSKRL 340 (476)
T ss_pred cceecccchhhHHHHH
Confidence 9999999999999884
No 5
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=220.11 Aligned_cols=173 Identities=27% Similarity=0.422 Sum_probs=160.6
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
+++.|...|+.+|||||+||||+.+++++ .+++++++..+|+||||+|++.| |.+++..|++. .+.++|+++||||+
T Consensus 291 ~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg-FademnEii~l-cpk~RQTmLFSATM 368 (691)
T KOG0338|consen 291 DLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG-FADEMNEIIRL-CPKNRQTMLFSATM 368 (691)
T ss_pred cHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH-HHHHHHHHHHh-ccccccceeehhhh
Confidence 46789999999999999999999999987 57899999999999999999999 99999999999 89999999999999
Q ss_pred cHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC--hhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh
Q 030396 83 PDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS--EEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~--~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
+..+..++...++.|+.+.+.+.......+.|.|+.+-. +.++-..+..++.+.-...+|||+.|++.|+.+.-.|.-
T Consensus 369 teeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGL 448 (691)
T KOG0338|consen 369 TEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGL 448 (691)
T ss_pred HHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986643 345777788888877678899999999999999999999
Q ss_pred CCCceEeeecCCCccccC
Q 030396 161 DDIRAGVIHSDLSQTQVF 178 (178)
Q Consensus 161 ~g~~~~~lh~~~~~~~R~ 178 (178)
.|+++..+||+|+|+||+
T Consensus 449 lgl~agElHGsLtQ~QRl 466 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRL 466 (691)
T ss_pred hhchhhhhcccccHHHHH
Confidence 999999999999999995
No 6
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-33 Score=207.91 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=154.4
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
.+.++++++||||||++++.+++.-++++..++|+||||+|++.. |.+.++.++.. +|.++|++++|||||-.+..+.
T Consensus 199 Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~-F~~~~e~li~~-lP~~rQillySATFP~tVk~Fm 276 (459)
T KOG0326|consen 199 RLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD-FQPIVEKLISF-LPKERQILLYSATFPLTVKGFM 276 (459)
T ss_pred eecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh-hhhHHHHHHHh-CCccceeeEEecccchhHHHHH
Confidence 356789999999999999999999999999999999999999999 99999999999 9999999999999999999999
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
.++++.|..+.+- ++.++.++.|+|.++ .+..|+..|.-++.+....+.||||||..++|.+|....+.||+|+++|+
T Consensus 277 ~~~l~kPy~INLM-~eLtl~GvtQyYafV-~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHa 354 (459)
T KOG0326|consen 277 DRHLKKPYEINLM-EELTLKGVTQYYAFV-EERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHA 354 (459)
T ss_pred HHhccCcceeehh-hhhhhcchhhheeee-chhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHH
Confidence 9999999999885 677889999999888 55679999999999998999999999999999999999999999999999
Q ss_pred CCCcccc
Q 030396 171 DLSQTQV 177 (178)
Q Consensus 171 ~~~~~~R 177 (178)
.|-|+.|
T Consensus 355 kM~Q~hR 361 (459)
T KOG0326|consen 355 KMAQEHR 361 (459)
T ss_pred HHHHhhh
Confidence 9999988
No 7
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.98 E-value=2.6e-32 Score=219.37 Aligned_cols=164 Identities=26% Similarity=0.313 Sum_probs=155.7
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
+.++|+||||||+..+++.+.+|++++++||+||||.|++.++|..+|..|+.. +|..+|+++||||.|..+..++.++
T Consensus 142 k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s-lP~~rQv~a~SATYp~nLdn~Lsk~ 220 (980)
T KOG4284|consen 142 KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS-LPQIRQVAAFSATYPRNLDNLLSKF 220 (980)
T ss_pred hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh-cchhheeeEEeccCchhHHHHHHHH
Confidence 568999999999999999999999999999999999999988899999999999 9999999999999999999999999
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChh-------hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEE-------GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~-------~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
+++|..|........+.+|+|+++..+..+ .|...|..+++..+..++||||+...+|+-++.+|...|++|.
T Consensus 221 mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~ 300 (980)
T KOG4284|consen 221 MRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVT 300 (980)
T ss_pred hcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeE
Confidence 999999999999999999999998776653 4788888888999999999999999999999999999999999
Q ss_pred eeecCCCccccC
Q 030396 167 VIHSDLSQTQVF 178 (178)
Q Consensus 167 ~lh~~~~~~~R~ 178 (178)
++.|.|+|.+|+
T Consensus 301 ~ISgaM~Q~~Rl 312 (980)
T KOG4284|consen 301 FISGAMSQKDRL 312 (980)
T ss_pred EeccccchhHHH
Confidence 999999999995
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.98 E-value=1.7e-31 Score=210.35 Aligned_cols=164 Identities=29% Similarity=0.479 Sum_probs=154.4
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCC------------------
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS------------------ 72 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~------------------ 72 (178)
+++.+|+|+|+|||||.+.+.+.-+-++.+-+||+||||.|+++| |.+++..|+.+ +|..
T Consensus 368 qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg-fE~dv~~iL~~-mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 368 QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG-FEPDVQKILEQ-MPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc-ccHHHHHHHHh-CCccccCCCccchhhHHHHHhh
Confidence 677899999999999999999998999999999999999999999 99999999999 6631
Q ss_pred -------ceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEe
Q 030396 73 -------IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFV 145 (178)
Q Consensus 73 -------~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ 145 (178)
+|+++||||+|+.+..++..|+.+|.++.++..+...+.+.|.++.++.+ .|...|.++++....+++|||+
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed-~k~kkL~eil~~~~~ppiIIFv 524 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSED-EKRKKLIEILESNFDPPIIIFV 524 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecch-HHHHHHHHHHHhCCCCCEEEEE
Confidence 79999999999999999999999999999999999999999999888655 5699999999998889999999
Q ss_pred CCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 146 QSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 146 ~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
|+++.|+.+|+.|.+.||+++.+||+-+|+||
T Consensus 525 N~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 525 NTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred echhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 99999999999999999999999999999998
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.98 E-value=7.3e-31 Score=213.10 Aligned_cols=169 Identities=25% Similarity=0.405 Sum_probs=153.0
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...|.+.++.+++|+|||||++.+++.++.+++++++++|+||||.+++++ |...+..+++. ++..+|+++||||+|+
T Consensus 113 ~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g-~~~~l~~i~~~-~~~~~q~ll~SAT~~~ 190 (460)
T PRK11776 113 MGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG-FQDAIDAIIRQ-APARRQTLLFSATYPE 190 (460)
T ss_pred hHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC-cHHHHHHHHHh-CCcccEEEEEEecCcH
Confidence 345677778899999999999999999999999999999999999999999 99999999999 8899999999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.+..+...++.+|..+.+.... ....+.+.++.+.. .+|...+..++......++||||||++.|+.+++.|.+.|++
T Consensus 191 ~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~ 268 (460)
T PRK11776 191 GIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFS 268 (460)
T ss_pred HHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCc
Confidence 9999999999999988886554 44568888876654 459999999998887889999999999999999999999999
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++.+|
T Consensus 269 v~~~hg~~~~~eR 281 (460)
T PRK11776 269 ALALHGDLEQRDR 281 (460)
T ss_pred EEEEeCCCCHHHH
Confidence 9999999999887
No 10
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.5e-31 Score=208.07 Aligned_cols=169 Identities=36% Similarity=0.504 Sum_probs=159.8
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+|.+.|+.+|.|||+|||||.+++.-+..++.++.++||||||.|++.| |.++++.|.+. ..+.+|+++|||||+..+
T Consensus 338 eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG-fe~qVrSI~~h-irpdrQtllFsaTf~~kI 415 (731)
T KOG0339|consen 338 EQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG-FEPQVRSIKQH-IRPDRQTLLFSATFKKKI 415 (731)
T ss_pred HHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccc-cHHHHHHHHhh-cCCcceEEEeeccchHHH
Confidence 6788889999999999999999999999999999999999999999999 99999999999 899999999999999999
Q ss_pred HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhCCCce
Q 030396 87 EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKDRAKELYGELAFDDIRA 165 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~~~ 165 (178)
+.+++.++.+|+.+...........|.|.+..+.+...|...|..-|... ..+++|||+..+..++.++..|.-.|+++
T Consensus 416 e~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v 495 (731)
T KOG0339|consen 416 EKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNV 495 (731)
T ss_pred HHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccccee
Confidence 99999999999999998888888899999999999999999988877654 46799999999999999999999999999
Q ss_pred EeeecCCCcccc
Q 030396 166 GVIHSDLSQTQV 177 (178)
Q Consensus 166 ~~lh~~~~~~~R 177 (178)
..+||+|.|.+|
T Consensus 496 ~llhgdkdqa~r 507 (731)
T KOG0339|consen 496 SLLHGDKDQAER 507 (731)
T ss_pred eeecCchhhHHH
Confidence 999999999888
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=1.2e-30 Score=217.34 Aligned_cols=171 Identities=23% Similarity=0.327 Sum_probs=156.4
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
++..|.+.++.+++|||||||++.+++.++.+++++++++|+||||.|++++ |.+.+..|++. ++...|+++||||+|
T Consensus 114 ~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g-f~~di~~Il~~-lp~~~q~llfSAT~p 191 (629)
T PRK11634 114 RYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG-FIEDVETIMAQ-IPEGHQTALFSATMP 191 (629)
T ss_pred CHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc-cHHHHHHHHHh-CCCCCeEEEEEccCC
Confidence 3456777888899999999999999999999999999999999999999999 99999999999 888999999999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
+.+..+...++.+|..+.+.........+.+.++.+ ....|...+..++......++||||+|+..|+.++..|...|+
T Consensus 192 ~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v-~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~ 270 (629)
T PRK11634 192 EAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGY 270 (629)
T ss_pred hhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEe-chhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC
Confidence 999999999999999988877777777888888666 4556888999999888788999999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
.+..+||+|++.+|
T Consensus 271 ~~~~lhgd~~q~~R 284 (629)
T PRK11634 271 NSAALNGDMNQALR 284 (629)
T ss_pred CEEEeeCCCCHHHH
Confidence 99999999999887
No 12
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.9e-31 Score=201.49 Aligned_cols=160 Identities=26% Similarity=0.391 Sum_probs=153.0
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
...++|++|||||+.+++..+.+....++++|+||||.+++.| |.++|..|+++ ++++.|++++|||.|.++....++
T Consensus 143 ~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g-fkdqI~~if~~-lp~~vQv~l~SAT~p~~vl~vt~~ 220 (397)
T KOG0327|consen 143 KDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG-FKDQIYDIFQE-LPSDVQVVLLSATMPSDVLEVTKK 220 (397)
T ss_pred ccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc-hHHHHHHHHHH-cCcchhheeecccCcHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999 99999999999 999999999999999999999999
Q ss_pred hccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
|+.+|..+.+..+..+..+++|+++.+..+. |+..|+++.+ ...+.+|||||++.+.++...|...|+.+.++||+|
T Consensus 221 f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~ 297 (397)
T KOG0327|consen 221 FMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDM 297 (397)
T ss_pred hccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeeccc
Confidence 9999999999999999999999999886665 9999999999 569999999999999999999999999999999999
Q ss_pred Ccccc
Q 030396 173 SQTQV 177 (178)
Q Consensus 173 ~~~~R 177 (178)
.|.+|
T Consensus 298 ~q~~R 302 (397)
T KOG0327|consen 298 EQNER 302 (397)
T ss_pred chhhh
Confidence 99988
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=4.5e-30 Score=206.54 Aligned_cols=170 Identities=31% Similarity=0.453 Sum_probs=152.6
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCC--CCceEEEEeecC
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN--PSIVRSLFSATL 82 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~--~~~q~i~~SAT~ 82 (178)
...|.+.++++++|+|||||++.+++..+.+++++++++|+||||.+++++ |..++..+++. ++ ..+|.+++|||+
T Consensus 123 ~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~-f~~~i~~i~~~-~~~~~~~~~~l~SAT~ 200 (423)
T PRK04837 123 YDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG-FIKDIRWLFRR-MPPANQRLNMLFSATL 200 (423)
T ss_pred HHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc-cHHHHHHHHHh-CCCccceeEEEEeccC
Confidence 456677778899999999999999999999999999999999999999999 99999999998 55 357889999999
Q ss_pred cHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 83 PDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
+..+..+...++.+|..+.+.........+.+.++.. +...|...+..+++.....++||||+|+..|+.++..|...|
T Consensus 201 ~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g 279 (423)
T PRK04837 201 SYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADG 279 (423)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 9999999999999999998887777777777776544 566789999999988778899999999999999999999999
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+++..+||+|++++|
T Consensus 280 ~~v~~lhg~~~~~~R 294 (423)
T PRK04837 280 HRVGLLTGDVAQKKR 294 (423)
T ss_pred CcEEEecCCCChhHH
Confidence 999999999999987
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.97 E-value=4.1e-30 Score=208.39 Aligned_cols=170 Identities=32% Similarity=0.440 Sum_probs=153.1
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
+.+|...+.++++|+|+|||+|++++..+.+++++++++|+||||.+++++ |...+..++.. ++...|++++|||+++
T Consensus 115 ~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~-~~~~i~~il~~-l~~~~q~l~~SAT~~~ 192 (456)
T PRK10590 115 INPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG-FIHDIRRVLAK-LPAKRQNLLFSATFSD 192 (456)
T ss_pred HHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc-cHHHHHHHHHh-CCccCeEEEEeCCCcH
Confidence 345666677889999999999999999998999999999999999999999 99999999999 8889999999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.+..+...++.+|..+.+.........+.+++..+ +...|...+..++......++||||||+..|+.++..|.+.|++
T Consensus 193 ~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~ 271 (456)
T PRK10590 193 DIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFV-DKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIR 271 (456)
T ss_pred HHHHHHHHHcCCCeEEEEecccccccceeEEEEEc-CHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCC
Confidence 99999999999999888877766777788877655 55677888888888877889999999999999999999999999
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++++|
T Consensus 272 ~~~lhg~~~~~~R 284 (456)
T PRK10590 272 SAAIHGNKSQGAR 284 (456)
T ss_pred EEEEECCCCHHHH
Confidence 9999999999887
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=203.53 Aligned_cols=168 Identities=27% Similarity=0.367 Sum_probs=147.5
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
...+.+.++|+|+|+|||||++++++. .+-+..++++|+||||++++.| |.++++.|++. ++.++|+++||||.|+.
T Consensus 197 ~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~G-F~~di~~Ii~~-lpk~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 197 VEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIG-FEEDVEQIIKI-LPKQRQTLLFSATQPSK 274 (543)
T ss_pred HHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcc-cHHHHHHHHHh-ccccceeeEeeCCCcHH
Confidence 344455569999999999999999884 4557888999999999999999 99999999999 89999999999999999
Q ss_pred HHHHHHHhcc-CcEEEEEc--CCccccCCceEEEEEcCChhhHHHHHHHHHHhcCC-CCEEEEeCCchHHHHHHHHhhhC
Q 030396 86 VEELARSIMH-DAVRVIVG--RKNTASESIKQKLVFAGSEEGKLLALRQSFAESLN-PPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 86 ~~~~~~~~~~-~~~~v~~~--~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~-~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
|++++...+. +|..+... ....+..++.|-|+.++.. .++..+..+++++.. .++||||.|...+..+++.|...
T Consensus 275 V~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~ 353 (543)
T KOG0342|consen 275 VKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI 353 (543)
T ss_pred HHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc
Confidence 9999999877 57777664 3456778899988766554 469999999998876 89999999999999999999999
Q ss_pred CCceEeeecCCCcccc
Q 030396 162 DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 g~~~~~lh~~~~~~~R 177 (178)
.++|..+||+++|..|
T Consensus 354 dlpv~eiHgk~~Q~kR 369 (543)
T KOG0342|consen 354 DLPVLEIHGKQKQNKR 369 (543)
T ss_pred CCchhhhhcCCccccc
Confidence 9999999999999987
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=206.36 Aligned_cols=170 Identities=26% Similarity=0.339 Sum_probs=152.8
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.+-....+ ++.+|+|||||||++++..+ .++..+++++|+||||+++++| |...++.|+.. +|..+|+++||||-+
T Consensus 181 ~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG-Fk~tL~~Ii~~-lP~~RQTLLFSATqt 257 (758)
T KOG0343|consen 181 VKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG-FKKTLNAIIEN-LPKKRQTLLFSATQT 257 (758)
T ss_pred hHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh-HHHHHHHHHHh-CChhheeeeeecccc
Confidence 34444555 47999999999999999774 6789999999999999999999 99999999999 999999999999999
Q ss_pred HHHHHHHHHhccCcEEEEEc--CCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 84 DFVEELARSIMHDAVRVIVG--RKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
..+..+++..+.||..|.+. ....+|.++.|+|+.+ +..+|++.|-.+++.+...++|||+.|.+++.++++.|...
T Consensus 258 ~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v-~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl 336 (758)
T KOG0343|consen 258 KSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIV-PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL 336 (758)
T ss_pred hhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEE-ehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc
Confidence 99999999999999777665 3367888898888766 66789999999999999999999999999999999999765
Q ss_pred --CCceEeeecCCCccccC
Q 030396 162 --DIRAGVIHSDLSQTQVF 178 (178)
Q Consensus 162 --g~~~~~lh~~~~~~~R~ 178 (178)
|++...+||.|+|..|.
T Consensus 337 rpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 337 RPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred CCCCceeeeccchhHHHHH
Confidence 99999999999999883
No 17
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=205.90 Aligned_cols=171 Identities=35% Similarity=0.492 Sum_probs=154.8
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccc-cCCChhhHHHHHhhCCC----CCceEEEE
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFE-VGNLLKHIDPVVKACSN----PSIVRSLF 78 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~-~~~~~~~i~~i~~~~~~----~~~q~i~~ 78 (178)
++..|.+.+.++|||+|+|||||.++++.+.+.+..+++||+||||.|++ .+ |.++|++|+... . .++|+++|
T Consensus 191 ~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mg-F~p~Ir~iv~~~-~~~~~~~~qt~mF 268 (482)
T KOG0335|consen 191 DLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMG-FEPQIRKIVEQL-GMPPKNNRQTLLF 268 (482)
T ss_pred chhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcc-ccccHHHHhccc-CCCCccceeEEEE
Confidence 46688999999999999999999999999999999999999999999999 77 999999999984 3 47999999
Q ss_pred eecCcHHHHHHHHHhccC-cEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcC----CC-----CEEEEeCCc
Q 030396 79 SATLPDFVEELARSIMHD-AVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL----NP-----PVLIFVQSK 148 (178)
Q Consensus 79 SAT~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~----~~-----~~lIF~~t~ 148 (178)
|||+|..+..++..|+.+ ...+.+...+....++.|.+.++ ++.+|...|++++.... .. +++|||.|+
T Consensus 269 SAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V-~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~ 347 (482)
T KOG0335|consen 269 SATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV-NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETK 347 (482)
T ss_pred eccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee-cchhhHHHHHHHhhcccCCcccCCcccceEEEEeecc
Confidence 999999999988888886 88888999999999999999888 55567788888887432 22 799999999
Q ss_pred hHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 149 DRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+.|..++.+|...|+++..+||+.+|.||
T Consensus 348 ~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 348 RGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred chhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 99999999999999999999999999987
No 18
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=6.4e-30 Score=210.72 Aligned_cols=169 Identities=33% Similarity=0.417 Sum_probs=147.8
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
..|...+.++++|+|+|||+|.+++..+..++++++++|+||||.+++++ |.+++..|+.. +++.+|++++|||+|..
T Consensus 244 ~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g-f~~~i~~il~~-~~~~~q~l~~SAT~p~~ 321 (545)
T PTZ00110 244 RGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVSQ-IRPDRQTLMWSATWPKE 321 (545)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc-hHHHHHHHHHh-CCCCCeEEEEEeCCCHH
Confidence 45667778899999999999999999998999999999999999999999 99999999999 78899999999999999
Q ss_pred HHHHHHHhcc-CcEEEEEcCCc-cccCCceEEEEEcCChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 86 VEELARSIMH-DAVRVIVGRKN-TASESIKQKLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 86 ~~~~~~~~~~-~~~~v~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
+..+...++. +|..+.+.... ....++.+.+..+ ....|...|.+++... ...++||||+|++.|+.++..|...
T Consensus 322 v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 322 VQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVV-EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred HHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEE-echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc
Confidence 9999998886 57777776544 3345677777555 5566888888888764 4679999999999999999999999
Q ss_pred CCceEeeecCCCcccc
Q 030396 162 DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 g~~~~~lh~~~~~~~R 177 (178)
|+++..+||+|++++|
T Consensus 401 g~~~~~ihg~~~~~eR 416 (545)
T PTZ00110 401 GWPALCIHGDKKQEER 416 (545)
T ss_pred CCcEEEEECCCcHHHH
Confidence 9999999999999987
No 19
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.4e-31 Score=198.97 Aligned_cols=162 Identities=27% Similarity=0.349 Sum_probs=155.7
Q ss_pred CCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 15 SCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
..+|+|||||.+.+++.. +-+++..++.+|+||||.|++.+.|.++-.+|.+. ++.+.|.++||||+.+.++.++.+.
T Consensus 207 ~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~-lP~~~QllLFSATf~e~V~~Fa~ki 285 (477)
T KOG0332|consen 207 TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRS-LPRNQQLLLFSATFVEKVAAFALKI 285 (477)
T ss_pred hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhh-cCCcceEEeeechhHHHHHHHHHHh
Confidence 368999999999999988 88999999999999999999876699999999999 8899999999999999999999999
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.++|..+.+..+.....+|+|+++.|..+.+|+..|.++......+++||||.|++.|++++..|...|+.+.++||+|.
T Consensus 286 vpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 286 VPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred cCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccch
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred cccc
Q 030396 174 QTQV 177 (178)
Q Consensus 174 ~~~R 177 (178)
..+|
T Consensus 366 ~~~R 369 (477)
T KOG0332|consen 366 VEQR 369 (477)
T ss_pred hHHH
Confidence 9988
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=2.8e-29 Score=202.52 Aligned_cols=170 Identities=26% Similarity=0.363 Sum_probs=154.6
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH-
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD- 84 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~- 84 (178)
.+|...+.++++|+|||||+|.+++..+.+++.+++++|+||||.+++++ |...+..+... .+...|+++||||++.
T Consensus 114 ~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~-~~~~~~~i~~~-~~~~~q~~~~SAT~~~~ 191 (434)
T PRK11192 114 MNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG-FAQDIETIAAE-TRWRKQTLLFSATLEGD 191 (434)
T ss_pred HHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC-cHHHHHHHHHh-CccccEEEEEEeecCHH
Confidence 45666777899999999999999999999999999999999999999999 99999999998 7888999999999985
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.+..+...++.+|..+..........++.+.++.+.....|...+..+++.....++||||+|+++|+.++..|.+.|++
T Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 271 (434)
T PRK11192 192 AVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN 271 (434)
T ss_pred HHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC
Confidence 47888888899999998887777778888888777777789999999998777889999999999999999999999999
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++.+|
T Consensus 272 ~~~l~g~~~~~~R 284 (434)
T PRK11192 272 CCYLEGEMVQAKR 284 (434)
T ss_pred EEEecCCCCHHHH
Confidence 9999999999887
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.2e-29 Score=208.38 Aligned_cols=170 Identities=27% Similarity=0.416 Sum_probs=150.8
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCC--CceEEEEeec
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNP--SIVRSLFSAT 81 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~--~~q~i~~SAT 81 (178)
...|.+.++++++|||+|||+|++++.++ .+++..+++||+||||.+++++ |...+..|++. ++. ..|+++||||
T Consensus 124 ~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g-f~~~i~~il~~-lp~~~~~q~ll~SAT 201 (572)
T PRK04537 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG-FIKDIRFLLRR-MPERGTRQTLLFSAT 201 (572)
T ss_pred HHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc-hHHHHHHHHHh-cccccCceEEEEeCC
Confidence 34667778888999999999999999775 5789999999999999999999 99999999998 554 7899999999
Q ss_pred CcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 82 LPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
++..+..+...++.+|..+...........+.+.++.+ ....|...+..++......++||||||++.|+.+++.|.+.
T Consensus 202 l~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~ 280 (572)
T PRK04537 202 LSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH 280 (572)
T ss_pred ccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc
Confidence 99999999999999998887776666677788877655 56678899999998877889999999999999999999999
Q ss_pred CCceEeeecCCCcccc
Q 030396 162 DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 g~~~~~lh~~~~~~~R 177 (178)
|+++..+||+|++.+|
T Consensus 281 g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 281 GYRVGVLSGDVPQKKR 296 (572)
T ss_pred CCCEEEEeCCCCHHHH
Confidence 9999999999999887
No 22
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=5.4e-31 Score=201.62 Aligned_cols=170 Identities=28% Similarity=0.452 Sum_probs=159.4
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.+.+|++.++.+.+|+|+|||||.+++.++.+++.-++++++||||+|++.| |.++++.|+.+ ....+|+++||||+|
T Consensus 291 ~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmG-FEddir~iF~~-FK~QRQTLLFSATMP 368 (610)
T KOG0341|consen 291 PVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMG-FEDDIRTIFSF-FKGQRQTLLFSATMP 368 (610)
T ss_pred cHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhcc-chhhHHHHHHH-Hhhhhheeeeecccc
Confidence 3578999999999999999999999999999999999999999999999999 99999999999 899999999999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
..+..+++..+-.|+.+.+++.+...-++.|.+-++ ..+.|+-++++.|.+. .+|++|||..+.+++.+.++|.-.|.
T Consensus 369 ~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV-kqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGV 446 (610)
T KOG0341|consen 369 KKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV-KQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGV 446 (610)
T ss_pred HHHHHHHHhhcccceEEecccccccchhHHHHHHHH-HhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccc
Confidence 999999999999999999999999888888888666 5567888888888877 78999999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
.++++|||-.|++|
T Consensus 447 EavaIHGGKDQedR 460 (610)
T KOG0341|consen 447 EAVAIHGGKDQEDR 460 (610)
T ss_pred eeEEeecCcchhHH
Confidence 99999999999998
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.6e-29 Score=194.62 Aligned_cols=169 Identities=28% Similarity=0.403 Sum_probs=155.0
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.+|.+.++++.+|+|+|||||.++.-.+.+++.++-|+|+||||+|+++| |.++|+.|+-- ..+++|+++.|||||+.
T Consensus 334 ~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg-FEpqIrkilld-iRPDRqtvmTSATWP~~ 411 (629)
T KOG0336|consen 334 NEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG-FEPQIRKILLD-IRPDRQTVMTSATWPEG 411 (629)
T ss_pred hhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc-ccHHHHHHhhh-cCCcceeeeecccCchH
Confidence 46889999999999999999999999999999999999999999999999 99999999988 88999999999999999
Q ss_pred HHHHHHHhccCcEEEEEcCCcccc-CCceEEEEEcCChhhHHHHHHHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 86 VEELARSIMHDAVRVIVGRKNTAS-ESIKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~-~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
++.+...|+++|..+.++.-+... ..++|.+ .+..+.+|.+.+..+++.+ .+.++||||..+..|+.|.+-|.-.|+
T Consensus 412 VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi 490 (629)
T KOG0336|consen 412 VRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGI 490 (629)
T ss_pred HHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhccc
Confidence 999999999999999888766554 4566666 7778888999999998865 467999999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
.+-.+||+.+|.+|
T Consensus 491 ~~q~lHG~r~Q~Dr 504 (629)
T KOG0336|consen 491 SSQSLHGNREQSDR 504 (629)
T ss_pred chhhccCChhhhhH
Confidence 99999999999876
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.4e-29 Score=193.32 Aligned_cols=166 Identities=25% Similarity=0.270 Sum_probs=151.2
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcCC-CCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRKK-IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~~-~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
.+|...|+||||||++++.++..+. ..+..++++|+||||.+++-| |.+++..+.++ +|...|.+++|||++.++..
T Consensus 140 ~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfG-Yeedlk~l~~~-LPr~~Q~~LmSATl~dDv~~ 217 (569)
T KOG0346|consen 140 VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFG-YEEDLKKLRSH-LPRIYQCFLMSATLSDDVQA 217 (569)
T ss_pred HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcc-cHHHHHHHHHh-CCchhhheeehhhhhhHHHH
Confidence 5777899999999999999999987 678999999999999999999 99999999999 89999999999999999999
Q ss_pred HHHHhccCcEEEEEcCCccc-cCCceEEEEEcCChhhHHHHHHHHHH-hcCCCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 89 LARSIMHDAVRVIVGRKNTA-SESIKQKLVFAGSEEGKLLALRQSFA-ESLNPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~-~~~i~~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
+-..++++|..+.+...+.. ++.+.|+++.|. +.+|+..+..+++ +...+++|||+||..+|.+|.-.|.+.|++.+
T Consensus 218 LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksc 296 (569)
T KOG0346|consen 218 LKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSC 296 (569)
T ss_pred HHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhh
Confidence 99999999999888655544 466777777665 7889999999998 55689999999999999999999999999999
Q ss_pred eeecCCCccccC
Q 030396 167 VIHSDLSQTQVF 178 (178)
Q Consensus 167 ~lh~~~~~~~R~ 178 (178)
++.|+||.+.|+
T Consensus 297 iLNseLP~NSR~ 308 (569)
T KOG0346|consen 297 ILNSELPANSRC 308 (569)
T ss_pred hhcccccccchh
Confidence 999999999885
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=2.1e-28 Score=200.99 Aligned_cols=169 Identities=25% Similarity=0.368 Sum_probs=147.3
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...|...+..+++|+|||||+|.+++.++.+++++++++|+||||.|+++| |.+.+..|++. + ++.|++++|||+++
T Consensus 236 ~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g-f~~~i~~i~~~-l-~~~q~l~~SATl~~ 312 (518)
T PLN00206 236 MPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG-FRDQVMQIFQA-L-SQPQVLLFSATVSP 312 (518)
T ss_pred hHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc-hHHHHHHHHHh-C-CCCcEEEEEeeCCH
Confidence 345667778899999999999999999999999999999999999999999 99999999998 4 47899999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcC--CCCEEEEeCCchHHHHHHHHhhh-C
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL--NPPVLIFVQSKDRAKELYGELAF-D 161 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~l~~~L~~-~ 161 (178)
.+..+...++.++..+...........+.+.++.+ ....|...+.+++.... ..++||||||+..|+.++..|.. .
T Consensus 313 ~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~-~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~ 391 (518)
T PLN00206 313 EVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWV-ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT 391 (518)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEec-cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc
Confidence 99999999999999888877666666777777655 44557778888887532 46899999999999999999975 6
Q ss_pred CCceEeeecCCCcccc
Q 030396 162 DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 g~~~~~lh~~~~~~~R 177 (178)
|+++..+||+|++++|
T Consensus 392 g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 392 GLKALSIHGEKSMKER 407 (518)
T ss_pred CcceEEeeCCCCHHHH
Confidence 9999999999999887
No 26
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5e-29 Score=194.21 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=147.6
Q ss_pred ccCCCcEEEeCcHHHHHHHHcC--CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~--~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..++|+|+|||||||.+++.+. .++++++.++|+||||+|++.| |...++.|++. +|.++++.+||||....+.++
T Consensus 128 kee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg-Fe~~~n~ILs~-LPKQRRTGLFSATq~~~v~dL 205 (567)
T KOG0345|consen 128 KEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG-FEASVNTILSF-LPKQRRTGLFSATQTQEVEDL 205 (567)
T ss_pred HHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc-HHHHHHHHHHh-cccccccccccchhhHHHHHH
Confidence 3478999999999999999874 4567799999999999999999 99999999999 999999999999999999999
Q ss_pred HHHhccCcEEEEEcCCcc--ccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC--CCce
Q 030396 90 ARSIMHDAVRVIVGRKNT--ASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD--DIRA 165 (178)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~--g~~~ 165 (178)
....++||..|.+...+. +|..+.-+|..| +...|...+.+++......++|||+.|.+.++.-...|... +.++
T Consensus 206 ~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i 284 (567)
T KOG0345|consen 206 ARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREI 284 (567)
T ss_pred HHhhccCceeeeecccccccCchhhcceeeEe-cHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcE
Confidence 999999999998876665 787888878666 66679999999999999999999999999999999998654 6799
Q ss_pred EeeecCCCcccc
Q 030396 166 GVIHSDLSQTQV 177 (178)
Q Consensus 166 ~~lh~~~~~~~R 177 (178)
..+||.|.+.+|
T Consensus 285 ~~iHGK~~q~~R 296 (567)
T KOG0345|consen 285 FSIHGKMSQKAR 296 (567)
T ss_pred EEecchhcchhH
Confidence 999999999887
No 27
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.9e-30 Score=203.65 Aligned_cols=171 Identities=25% Similarity=0.284 Sum_probs=147.0
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCC---CCCCeeEEEEeccccccccCCChhhHHHHHhhCC----CCCceEEE
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKI---DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACS----NPSIVRSL 77 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~---~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~----~~~~q~i~ 77 (178)
.++|.++|+..|+|||+||||||+++..++. +++.++++|+||+|+|++.| +.+.+..|+..+. +..+|+++
T Consensus 303 vqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekg-hF~Els~lL~~L~e~~~~~qrQTlV 381 (731)
T KOG0347|consen 303 VQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKG-HFEELSKLLKHLNEEQKNRQRQTLV 381 (731)
T ss_pred HHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhc-cHHHHHHHHHHhhhhhcccccceEE
Confidence 5789999999999999999999999988765 68999999999999999999 8888999988842 35689999
Q ss_pred EeecCcH---------------------HHHHHHHH--hccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHH
Q 030396 78 FSATLPD---------------------FVEELARS--IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA 134 (178)
Q Consensus 78 ~SAT~~~---------------------~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 134 (178)
||||++- .+..++.. +...|.++++.+...+...+.+..+.| +..+|..+|..+|.
T Consensus 382 FSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~ 460 (731)
T KOG0347|consen 382 FSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLT 460 (731)
T ss_pred EEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEe
Confidence 9999873 12333433 344678899988888888888888888 44567788888888
Q ss_pred hcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCccccC
Q 030396 135 ESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQVF 178 (178)
Q Consensus 135 ~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R~ 178 (178)
++ ++++|||||++..+..|+.+|...+++...+|+.|.|.+|+
T Consensus 461 ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRL 503 (731)
T KOG0347|consen 461 RY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRL 503 (731)
T ss_pred ec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Confidence 88 89999999999999999999999999999999999999985
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=2.9e-27 Score=189.00 Aligned_cols=169 Identities=24% Similarity=0.382 Sum_probs=151.9
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
++.+.+.++++|+||||+++.+++..+...+++++++|+||+|.+++.+ +...+..+++. .+.+.|++++|||+|+++
T Consensus 138 ~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~-~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 215 (401)
T PTZ00424 138 DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG-FKGQIYDVFKK-LPPDVQVALFSATMPNEI 215 (401)
T ss_pred HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc-hHHHHHHHHhh-CCCCcEEEEEEecCCHHH
Confidence 4555667789999999999999999888889999999999999999988 89999999999 788999999999999999
Q ss_pred HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 87 EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
..+...++.+|..+..........++.++++.+.....+...+.+++......++||||+|++.|+.++..|.+.|+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~ 295 (401)
T PTZ00424 216 LELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVS 295 (401)
T ss_pred HHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEE
Confidence 99999999999888877767777788888877766666888888888877788999999999999999999999999999
Q ss_pred eeecCCCcccc
Q 030396 167 VIHSDLSQTQV 177 (178)
Q Consensus 167 ~lh~~~~~~~R 177 (178)
.+||+|++++|
T Consensus 296 ~~h~~~~~~~R 306 (401)
T PTZ00424 296 CMHGDMDQKDR 306 (401)
T ss_pred EEeCCCCHHHH
Confidence 99999999887
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=2.3e-27 Score=193.30 Aligned_cols=170 Identities=27% Similarity=0.386 Sum_probs=148.6
Q ss_pred HHhHHhc-cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCC-CCceEEEEeecCc
Q 030396 6 VRSTDLS-KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN-PSIVRSLFSATLP 83 (178)
Q Consensus 6 ~~q~~~l-~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~-~~~q~i~~SAT~~ 83 (178)
..|.+.+ ++.++|+|+||++|++++..+...+++++++|+||+|.+++.+ |.+.+..|++.+.. .+.|++++|||++
T Consensus 203 ~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~-~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 203 DKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG-FIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred HHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcc-cHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 3455544 3579999999999999999888899999999999999999999 99999999998422 3689999999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.++..+...++.+|..+.+.........+.+.++.+ ...+|...+..++......++||||+++++|+.++..|...|+
T Consensus 282 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~ 360 (475)
T PRK01297 282 DDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV-AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI 360 (475)
T ss_pred HHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEe-cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999999999999999888877776667777777655 4456888899999887778999999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
++..+||+|++++|
T Consensus 361 ~~~~~~g~~~~~~R 374 (475)
T PRK01297 361 NAAQLSGDVPQHKR 374 (475)
T ss_pred CEEEEECCCCHHHH
Confidence 99999999999887
No 30
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.6e-27 Score=178.52 Aligned_cols=171 Identities=21% Similarity=0.262 Sum_probs=148.3
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcC----CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRK----KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~----~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
...|...|..+||+||+||||+.+++..+ ..-+++++++|+||||.+++.+ |...++.|.+. +|..+|+.+|||
T Consensus 115 ~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~-f~d~L~~i~e~-lP~~RQtLlfSA 192 (442)
T KOG0340|consen 115 MIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC-FPDILEGIEEC-LPKPRQTLLFSA 192 (442)
T ss_pred HhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc-hhhHHhhhhcc-CCCccceEEEEe
Confidence 45677788899999999999999999875 2348999999999999999998 99999999999 888899999999
Q ss_pred cCcHHHHHHHHHhccC--cEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcC---CCCEEEEeCCchHHHHHH
Q 030396 81 TLPDFVEELARSIMHD--AVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL---NPPVLIFVQSKDRAKELY 155 (178)
Q Consensus 81 T~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~---~~~~lIF~~t~~~~~~l~ 155 (178)
|+++.+.++...-... +..+...+....++.+.+.|+.+ +...|..++..++.... ...++||+||...|+.|+
T Consensus 193 Titd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~-~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~ 271 (442)
T KOG0340|consen 193 TITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILV-SIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLS 271 (442)
T ss_pred ehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeec-chhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHH
Confidence 9999888876665554 56666667778888899999887 55568899999997543 567999999999999999
Q ss_pred HHhhhCCCceEeeecCCCccccC
Q 030396 156 GELAFDDIRAGVIHSDLSQTQVF 178 (178)
Q Consensus 156 ~~L~~~g~~~~~lh~~~~~~~R~ 178 (178)
..|...++.+.++||.|+|.+|+
T Consensus 272 ~~l~~le~r~~~lHs~m~Q~eR~ 294 (442)
T KOG0340|consen 272 MTLKNLEVRVVSLHSQMPQKERL 294 (442)
T ss_pred HHHhhhceeeeehhhcchHHHHH
Confidence 99999999999999999999984
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=194.00 Aligned_cols=172 Identities=28% Similarity=0.455 Sum_probs=157.9
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcC---CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRK---KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~---~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
...+|+..+++++.|+|+||||..+++..+ ..++.++.++|+||||+|++.+ |.|++..|++. +++.+|+++|||
T Consensus 477 ~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmg-fePq~~~Ii~n-lrpdrQtvlfSa 554 (997)
T KOG0334|consen 477 GISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMG-FEPQITRILQN-LRPDRQTVLFSA 554 (997)
T ss_pred cHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheec-cCcccchHHhh-cchhhhhhhhhh
Confidence 357899999999999999999999998643 4567777899999999999999 99999999999 899999999999
Q ss_pred cCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHh-cCCCCEEEEeCCchHHHHHHHHhh
Q 030396 81 TLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE-SLNPPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 81 T~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~ 159 (178)
|||..++.+.+..++-|..+.+.........+.+.+..+..++.|+..|.++|.. ....++||||.+...|..+...|.
T Consensus 555 tfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 555 TFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 9999999999999999999999888888889999998887689999999999984 457899999999999999999999
Q ss_pred hCCCceEeeecCCCcccc
Q 030396 160 FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 160 ~~g~~~~~lh~~~~~~~R 177 (178)
+.||+|..+||+.+|.+|
T Consensus 635 ~ag~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDR 652 (997)
T ss_pred hcCcchhhhcCCCchHHH
Confidence 999999999999999987
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.9e-26 Score=176.85 Aligned_cols=171 Identities=28% Similarity=0.311 Sum_probs=155.6
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.+.+|-..|..+||||++|||++..+.-.-.+.++++.|+||||+|.+++.| |.+++.+++.. ++.++|+++||||+|
T Consensus 129 ~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg-fqeql~e~l~r-l~~~~QTllfSatlp 206 (529)
T KOG0337|consen 129 SIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG-FQEQLHEILSR-LPESRQTLLFSATLP 206 (529)
T ss_pred hHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh-hHHHHHHHHHh-CCCcceEEEEeccCc
Confidence 4678888999999999999999998887777999999999999999999999 99999999999 899999999999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcC-CCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL-NPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
..+....+.-+.+|..|.++-+....+.+...+..+ ...+|..+|+.++.... .++++|||.|...++.+.+.|...|
T Consensus 207 ~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~-~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g 285 (529)
T KOG0337|consen 207 RDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV-RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG 285 (529)
T ss_pred hhhHHHHHccCCCCceEEeehhhhcchhhhhheeee-ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC
Confidence 999999999999999999888888888888888666 45568899999988653 5689999999999999999999999
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+.+..+-|.|.++-|
T Consensus 286 ~~~s~iysslD~~aR 300 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEAR 300 (529)
T ss_pred CCccccccccChHhh
Confidence 999999999998876
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.1e-26 Score=182.19 Aligned_cols=170 Identities=28% Similarity=0.374 Sum_probs=138.3
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC------------CCCC
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------------SNPS 72 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------------~~~~ 72 (178)
+++...|++|++|+|||||||.+++.+ .++.+++++|+||||+|++++.| |...|..|++.+ ++..
T Consensus 253 KSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLG-fekdit~Il~~v~~~~~~e~~~~~lp~q 331 (708)
T KOG0348|consen 253 KSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELG-FEKDITQILKAVHSIQNAECKDPKLPHQ 331 (708)
T ss_pred ccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhcc-chhhHHHHHHHHhhccchhcccccccHH
Confidence 445667789999999999999999987 78899999999999999999999 999999999884 1124
Q ss_pred ceEEEEeecCcHHHHHHHHHhccCcEEEEEcCC-------------------------ccccCCceEEEEEcCChhhHHH
Q 030396 73 IVRSLFSATLPDFVEELARSIMHDAVRVIVGRK-------------------------NTASESIKQKLVFAGSEEGKLL 127 (178)
Q Consensus 73 ~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~-------------------------~~~~~~i~~~~~~~~~~~~k~~ 127 (178)
.|.+++|||+.+.|..+....++||..+..+.. ...|.++.|.|..+++. -+.-
T Consensus 332 ~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV 410 (708)
T KOG0348|consen 332 LQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLV 410 (708)
T ss_pred HHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc-hhHH
Confidence 789999999999999999999999998873111 23456677888777654 3544
Q ss_pred HHHHHH----HhcCCCCEEEEeCCchHHHHHHHHhhhC----------------------CCceEeeecCCCcccc
Q 030396 128 ALRQSF----AESLNPPVLIFVQSKDRAKELYGELAFD----------------------DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 128 ~l~~ll----~~~~~~~~lIF~~t~~~~~~l~~~L~~~----------------------g~~~~~lh~~~~~~~R 177 (178)
.|..+| +....+++|||+.+...+++=++.|.+. +.+++-+||+|+|++|
T Consensus 411 ~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 411 ALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred HHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 555544 3455779999999999999988887531 3578999999999998
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.9e-26 Score=167.35 Aligned_cols=146 Identities=24% Similarity=0.350 Sum_probs=131.4
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
+++-.+.+++.|+|+||||||++.+.+.+.+++++++.+|+||+|+|+++-..+.++++|.+. .|...|+++||||++.
T Consensus 151 Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~-tp~~KQvmmfsatlsk 229 (387)
T KOG0329|consen 151 IKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM-TPHEKQVMMFSATLSK 229 (387)
T ss_pred ccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhc-Ccccceeeeeeeecch
Confidence 566778889999999999999999999999999999999999999999886699999999999 9999999999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCC-ccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHH
Q 030396 85 FVEELARSIMHDAVRVIVGRK-NTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAK 152 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~ 152 (178)
+++..+.+|+.||..+.++.+ ..+..++-|+|+.. .+..|...+.++++.....+++||+.+..+..
T Consensus 230 eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkL-ke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 230 EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKL-KENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS 297 (387)
T ss_pred hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhh-hhhhhhhhhhhhhhhhhhcceeEeeehhhhhh
Confidence 999999999999988877665 45667787777666 56679999999999988999999999988854
No 35
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.91 E-value=5.6e-23 Score=173.42 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=126.9
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCC----------------CCCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKID----------------LSRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~----------------~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
+...|.+.+..+|+|||||+ +++.++.++ +++++++|+|||| ++.+ |.+.+..|++.
T Consensus 124 ~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g-F~~~l~~Il~~ 196 (844)
T TIGR02621 124 ADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPA-FQELLKQIMNE 196 (844)
T ss_pred ChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccc-cHHHHHHHHHh
Confidence 35678888999999999995 666666652 7899999999999 6788 99999999997
Q ss_pred C-CCC---CceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHH---HhcCCCC
Q 030396 68 C-SNP---SIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSF---AESLNPP 140 (178)
Q Consensus 68 ~-~~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll---~~~~~~~ 140 (178)
+ .+. .+|+++||||++.++......++.+|..+.+........++.+++ .+. ...|...+...+ .....++
T Consensus 197 l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v-~v~-~e~Kl~~lv~~L~~ll~e~g~~ 274 (844)
T TIGR02621 197 QQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLV-PPS-DEKFLSTMVKELNLLMKDSGGA 274 (844)
T ss_pred cccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEE-ecC-hHHHHHHHHHHHHHHHhhCCCc
Confidence 3 133 269999999999988888888888887776665556666666643 443 333443333322 1234678
Q ss_pred EEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 141 VLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+||||||+++|+.+++.|.+.|+ ..+||+|++.+|
T Consensus 275 vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 275 ILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred EEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 99999999999999999999987 999999999987
No 36
>PRK09401 reverse gyrase; Reviewed
Probab=99.89 E-value=4.6e-22 Score=174.63 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=124.4
Q ss_pred HHhHHhcc-CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccc-----------cCCCh-hhHHHHHhhCCCC-
Q 030396 6 VRSTDLSK-FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFE-----------VGNLL-KHIDPVVKACSNP- 71 (178)
Q Consensus 6 ~~q~~~l~-~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~-----------~~~~~-~~i~~i~~~~~~~- 71 (178)
.++.+.++ +.++|+|||||+|.+++. .+...+++++|+||||.+++ .| |. +++..+++. ++.
T Consensus 169 ~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG-F~~~~i~~i~~~-i~~~ 244 (1176)
T PRK09401 169 EEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG-FSEEDIEKAMEL-IRLK 244 (1176)
T ss_pred HHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCC-CCHHHHHHHHHh-cccc
Confidence 33444455 469999999999999887 45667799999999999996 45 74 678888877 443
Q ss_pred -----------------------CceEEEEeecCcHH-HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHH
Q 030396 72 -----------------------SIVRSLFSATLPDF-VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLL 127 (178)
Q Consensus 72 -----------------------~~q~i~~SAT~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~ 127 (178)
..|+++||||+++. +.. .++.++..+.++.......++.|.++.+. +|..
T Consensus 245 ~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~---~k~~ 318 (1176)
T PRK09401 245 RKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE---DSVE 318 (1176)
T ss_pred cccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc---cHHH
Confidence 68999999999875 332 34456666677766667788999887654 5777
Q ss_pred HHHHHHHhcCCCCEEEEeCCchH---HHHHHHHhhhCCCceEeeecCC
Q 030396 128 ALRQSFAESLNPPVLIFVQSKDR---AKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 128 ~l~~ll~~~~~~~~lIF~~t~~~---~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
.+.++++.. ..++||||+|+.. |+++++.|...|+++..+||+|
T Consensus 319 ~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 319 KLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred HHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 888888876 4689999999888 9999999999999999999998
No 37
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.89 E-value=4.6e-23 Score=160.30 Aligned_cols=171 Identities=20% Similarity=0.185 Sum_probs=144.6
Q ss_pred hHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCC------CCceEEEE
Q 030396 5 LVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN------PSIVRSLF 78 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~------~~~q~i~~ 78 (178)
.+.|.++++++.+|+||||||+.+++..+.+.+..++++|+||+|.++..+ +-+.|.+...+ ++ ...|.+++
T Consensus 329 ~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qg-y~d~I~r~h~q-ip~~tsdg~rlq~~vC 406 (725)
T KOG0349|consen 329 KRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQG-YDDKIYRFHGQ-IPHMTSDGFRLQSPVC 406 (725)
T ss_pred hHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcc-cHHHHHHHhcc-chhhhcCCccccccee
Confidence 567899999999999999999999999999999999999999999999999 88999998888 44 35799999
Q ss_pred eecCcH-HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhh---------------------------------
Q 030396 79 SATLPD-FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEG--------------------------------- 124 (178)
Q Consensus 79 SAT~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~--------------------------------- 124 (178)
|||+.. ++..+.++.++-|.||++..++..+..++|.+..+++.-+
T Consensus 407 satlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~ 486 (725)
T KOG0349|consen 407 SATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSS 486 (725)
T ss_pred eeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhh
Confidence 999985 5888999999999999999999888888887765544310
Q ss_pred -----HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCC---CceEeeecCCCcccc
Q 030396 125 -----KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDD---IRAGVIHSDLSQTQV 177 (178)
Q Consensus 125 -----k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g---~~~~~lh~~~~~~~R 177 (178)
|-++-...++++...++||||.|+.+|+.|...|.+.| |.|.++||+..+.||
T Consensus 487 a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Er 547 (725)
T KOG0349|consen 487 ATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDER 547 (725)
T ss_pred hhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHH
Confidence 22222334556667899999999999999999998764 799999999976665
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=3.5e-21 Score=163.60 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=116.1
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcC----CCCCCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEE
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRK----KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRS 76 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~----~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i 76 (178)
+|.+.++++++|||+||+++...+... ...+++++++|+||||.+.+ . |...+..+++.+ .+.+.|++
T Consensus 121 ~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~-fg~~~~~il~rL~ri~~~~g~~~q~i 198 (742)
T TIGR03817 121 EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-V-FGSHVALVLRRLRRLCARYGASPVFV 198 (742)
T ss_pred HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-c-cHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 455667778999999999987543211 12378999999999999965 3 666655554442 35678999
Q ss_pred EEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC----------------hhhHHHHHHHHHHhcCCCC
Q 030396 77 LFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS----------------EEGKLLALRQSFAESLNPP 140 (178)
Q Consensus 77 ~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~----------------~~~k~~~l~~ll~~~~~~~ 140 (178)
++|||+++... .+..+++.|..+ +..+. .+....+..+..+. ...+...+.++++. ..+
T Consensus 199 ~~SATi~n~~~-~~~~l~g~~~~~-i~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~ 273 (742)
T TIGR03817 199 LASATTADPAA-AASRLIGAPVVA-VTEDG-SPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GAR 273 (742)
T ss_pred EEecCCCCHHH-HHHHHcCCCeEE-ECCCC-CCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCC
Confidence 99999998754 677788877554 33222 22222333322221 12466677777765 479
Q ss_pred EEEEeCCchHHHHHHHHhhhC--------CCceEeeecCCCcccc
Q 030396 141 VLIFVQSKDRAKELYGELAFD--------DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~~--------g~~~~~lh~~~~~~~R 177 (178)
+||||||++.|+.++..|.+. +.++..+||++++++|
T Consensus 274 ~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 274 TLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHH
Confidence 999999999999999998753 6789999999999988
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4e-22 Score=159.31 Aligned_cols=170 Identities=52% Similarity=0.756 Sum_probs=157.9
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCC--CCCCCeeEEEEecccccccc-CCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKK--IDLSRVEYLVLDEADKLFEV-GNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~--~~~~~l~~lViDE~d~ll~~-~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
++.......++|+|+||-|+..++..+. ++++.+.++|+||+|.+++. + |..++..|++.+..+...+-+||||++
T Consensus 254 k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~-f~~Qla~I~sac~s~~i~~a~FSat~~ 332 (593)
T KOG0344|consen 254 KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEF-FVEQLADIYSACQSPDIRVALFSATIS 332 (593)
T ss_pred ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhh-HHHHHHHHHHHhcCcchhhhhhhcccc
Confidence 4444555678999999999999998876 78999999999999999999 7 999999999998888888899999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHh-hhCC
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGEL-AFDD 162 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L-~~~g 162 (178)
..++++++....++..+.++..+.....+.|..++|.+...|+-.+.+++...-.+|++||+.+.++|..|...| ...+
T Consensus 333 ~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~ 412 (593)
T KOG0344|consen 333 VYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDN 412 (593)
T ss_pred HHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccC
Confidence 999999999999999999998888888999999999999999999999999998999999999999999999999 8889
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+.+..+||+.++.+|
T Consensus 413 i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 413 INVDVIHGERSQKQR 427 (593)
T ss_pred cceeeEecccchhHH
Confidence 999999999999887
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=8.1e-21 Score=154.70 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=114.9
Q ss_pred cCCCcEEEeCcHHHHHHH-HcCCC-CCCCeeEEEEeccccccccC-CChhhHHHHH--hhCCCCCceEEEEeecCcHHHH
Q 030396 13 KFSCDILISTPLRLRLAI-RRKKI-DLSRVEYLVLDEADKLFEVG-NLLKHIDPVV--KACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l-~~~~~-~~~~l~~lViDE~d~ll~~~-~~~~~i~~i~--~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
.+.++|+++||+++.... ....+ ...+++++|+||||.+.+|| .|++.+..+. .. ..++.+++++|||.++.+.
T Consensus 99 ~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~~l~lTAT~~~~~~ 177 (470)
T TIGR00614 99 DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ-KFPNVPIMALTATASPSVR 177 (470)
T ss_pred cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH-HcCCCceEEEecCCCHHHH
Confidence 356899999999976422 11112 56889999999999999987 5778776652 22 2357889999999999887
Q ss_pred HHHHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHH-hcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 88 ELARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA-ESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 88 ~~~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
..+...+. +|..+... ...+++...+.. ...+....+..++. ....+++||||+|+++|+.++..|...|++
T Consensus 178 ~di~~~l~l~~~~~~~~s---~~r~nl~~~v~~--~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~ 252 (470)
T TIGR00614 178 EDILRQLNLKNPQIFCTS---FDRPNLYYEVRR--KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIA 252 (470)
T ss_pred HHHHHHcCCCCCcEEeCC---CCCCCcEEEEEe--CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCC
Confidence 76666543 55444332 233444333322 22245566777776 444556799999999999999999999999
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++++|
T Consensus 253 ~~~~H~~l~~~eR 265 (470)
T TIGR00614 253 AGAYHAGLEISAR 265 (470)
T ss_pred eeEeeCCCCHHHH
Confidence 9999999999887
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.86 E-value=1.2e-20 Score=162.25 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=115.2
Q ss_pred CCCcEEEeCcHHHHH---HHHc-CCC-CCCCeeEEEEeccccccccC-CChhhHHHH--HhhCCCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRL---AIRR-KKI-DLSRVEYLVLDEADKLFEVG-NLLKHIDPV--VKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~---~l~~-~~~-~~~~l~~lViDE~d~ll~~~-~~~~~i~~i--~~~~~~~~~q~i~~SAT~~~~ 85 (178)
+.++||++|||+|.. ++.. ..+ ....+.+|||||||++.+|| .|++.+..+ +.. ..+..|++++|||.++.
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~-~fp~vPilALTATAT~~ 629 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ-KFPNIPVLALTATATAS 629 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHH-hCCCCCeEEEEecCCHH
Confidence 578999999999862 2221 111 24568999999999999998 788988874 444 33578899999999999
Q ss_pred HHHHHHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 86 VEELARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 86 ~~~~~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
+.+.+...+. ++..+. .....+++...+ +.........+..++... ...+.||||+|+++|+.++..|...|
T Consensus 630 V~eDI~~~L~l~~~~vfr---~Sf~RpNL~y~V--v~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G 704 (1195)
T PLN03137 630 VKEDVVQALGLVNCVVFR---QSFNRPNLWYSV--VPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG 704 (1195)
T ss_pred HHHHHHHHcCCCCcEEee---cccCccceEEEE--eccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC
Confidence 8876666554 333322 223344553333 223223345667777644 35689999999999999999999999
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+++..+||+|++++|
T Consensus 705 ika~~YHAGLs~eeR 719 (1195)
T PLN03137 705 HKAAFYHGSMDPAQR 719 (1195)
T ss_pred CCeeeeeCCCCHHHH
Confidence 999999999999988
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.85 E-value=2.7e-20 Score=155.51 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=121.6
Q ss_pred ccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHHHHHhhC-CCCCceEEEEeecCcHHHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDPVVKAC-SNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~-~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+.++|+++||+++......+.+...+++++|+||||.+.+|| .|++.+..+.... .-++.+++++|||.++.+...
T Consensus 100 ~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~ 179 (591)
T TIGR01389 100 VNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQD 179 (591)
T ss_pred hCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHH
Confidence 34678999999999976544444566789999999999999987 6888877764431 113455999999999998877
Q ss_pred HHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEe
Q 030396 90 ARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 90 ~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~ 167 (178)
+..++. ++..+. .....+++...+. ....+...+.+++......++||||+|++.|+.+++.|...|+++..
T Consensus 180 i~~~l~~~~~~~~~---~~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~ 253 (591)
T TIGR01389 180 IRELLRLADANEFI---TSFDRPNLRFSVV---KKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALA 253 (591)
T ss_pred HHHHcCCCCCCeEe---cCCCCCCcEEEEE---eCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEE
Confidence 777665 333332 2233344433332 33456778888888777789999999999999999999999999999
Q ss_pred eecCCCcccc
Q 030396 168 IHSDLSQTQV 177 (178)
Q Consensus 168 lh~~~~~~~R 177 (178)
+||+|+.++|
T Consensus 254 ~H~~l~~~~R 263 (591)
T TIGR01389 254 YHAGLSNKVR 263 (591)
T ss_pred EECCCCHHHH
Confidence 9999999887
No 43
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.85 E-value=3e-20 Score=164.67 Aligned_cols=166 Identities=21% Similarity=0.231 Sum_probs=109.5
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccC---CChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVG---NLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~---~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
++.++++++|+|||+|||+|..++.++ ...+++++++|+||+|.+++.. .+...++++... .+.+.|+|++|||+
T Consensus 91 eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l-~~~~~QrIgLSATI 169 (1490)
T PRK09751 91 ERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL-LHTSAQRIGLSATV 169 (1490)
T ss_pred HHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh-CCCCCeEEEEEeeC
Confidence 444567788999999999999988654 3468999999999999998753 233455555555 66789999999999
Q ss_pred cHHHHHHHHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhh----------------H----HHHHHHHHHh-cCCC
Q 030396 83 PDFVEELARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEG----------------K----LLALRQSFAE-SLNP 139 (178)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~----------------k----~~~l~~ll~~-~~~~ 139 (178)
++. +++. .|+. +|..+.. ........+. .++...+..+ . -.....++.. ....
T Consensus 170 ~n~-eevA-~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~ 245 (1490)
T PRK09751 170 RSA-SDVA-AFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHR 245 (1490)
T ss_pred CCH-HHHH-HHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCC
Confidence 974 4544 4543 3554433 2222222332 2222211100 0 0111122322 2357
Q ss_pred CEEEEeCCchHHHHHHHHhhhCC---------------------------------CceEeeecCCCcccc
Q 030396 140 PVLIFVQSKDRAKELYGELAFDD---------------------------------IRAGVIHSDLSQTQV 177 (178)
Q Consensus 140 ~~lIF~~t~~~~~~l~~~L~~~g---------------------------------~~~~~lh~~~~~~~R 177 (178)
++||||||++.|+.++..|.+.+ +.+..+||+|++++|
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 89999999999999999997531 236789999999988
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.84 E-value=6.4e-20 Score=153.36 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=115.2
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHHHHHhhC-CCCCceEEEEeecCcHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDPVVKAC-SNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~-~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
.+.++++++||+++........+...+++++|+||||.+.+|| +|++.+..+.... ..++.+++++|||.++.+...+
T Consensus 113 ~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di 192 (607)
T PRK11057 113 TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDI 192 (607)
T ss_pred CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHH
Confidence 3568999999999874322222344578999999999999987 5777776552210 2257899999999998876654
Q ss_pred HHhc--cCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEee
Q 030396 91 RSIM--HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 91 ~~~~--~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~l 168 (178)
...+ .+|..... ....+++...+ + ....+...+..++......++||||+|+++|+.++..|...|+++..+
T Consensus 193 ~~~l~l~~~~~~~~---~~~r~nl~~~v--~-~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~ 266 (607)
T PRK11057 193 VRLLGLNDPLIQIS---SFDRPNIRYTL--V-EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAY 266 (607)
T ss_pred HHHhCCCCeEEEEC---CCCCCcceeee--e-eccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEe
Confidence 4443 35543322 22233443222 2 233456677777777778899999999999999999999999999999
Q ss_pred ecCCCcccc
Q 030396 169 HSDLSQTQV 177 (178)
Q Consensus 169 h~~~~~~~R 177 (178)
||+|++++|
T Consensus 267 Ha~l~~~~R 275 (607)
T PRK11057 267 HAGLDNDVR 275 (607)
T ss_pred cCCCCHHHH
Confidence 999999887
No 45
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.83 E-value=2.4e-19 Score=157.72 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=115.6
Q ss_pred Hhcc-CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccc-----------cCCChhh-HHHHHhhC--------
Q 030396 10 DLSK-FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFE-----------VGNLLKH-IDPVVKAC-------- 68 (178)
Q Consensus 10 ~~l~-~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~-----------~~~~~~~-i~~i~~~~-------- 68 (178)
+.++ ++++|+|||||+|.+.+..- .. +++++|+||||.|++ .| |.++ ++.|+..+
T Consensus 172 ~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~vd~il~llG-F~~e~i~~il~~~~~~~~~~~ 247 (1171)
T TIGR01054 172 ERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNVDKLLKLLG-FSEELIEKAWKLIRLRLKLYR 247 (1171)
T ss_pred HHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccHHHHHHHcC-CCHHHHHHHHHHhhhccccch
Confidence 3344 45999999999999887652 12 899999999999998 56 7664 56654320
Q ss_pred -------------CCCCce--EEEEeec-CcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHH
Q 030396 69 -------------SNPSIV--RSLFSAT-LPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQS 132 (178)
Q Consensus 69 -------------~~~~~q--~i~~SAT-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 132 (178)
.+..+| ++++||| .|..+.. .++.++..+.+........++.+.++.... +...+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~---~~~~L~~l 321 (1171)
T TIGR01054 248 ALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDED---LKETLLEI 321 (1171)
T ss_pred HHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEeccc---HHHHHHHH
Confidence 334445 5678999 5654432 456666677777777778889888865533 24567788
Q ss_pred HHhcCCCCEEEEeCCc---hHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 133 FAESLNPPVLIFVQSK---DRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 133 l~~~~~~~~lIF~~t~---~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
++.. ..++||||+|+ +.|+.++..|.+.|+++..+||+|++
T Consensus 322 l~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 322 VKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred HHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 8776 47899999999 99999999999999999999999964
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.81 E-value=3.3e-19 Score=154.09 Aligned_cols=165 Identities=24% Similarity=0.291 Sum_probs=105.0
Q ss_pred hHHhccCCCcEEEeCcHHHHHHHHcCCC--CCCCeeEEEEeccccccccCCChhhHH----HHHhhCCCCCceEEEEeec
Q 030396 8 STDLSKFSCDILISTPLRLRLAIRRKKI--DLSRVEYLVLDEADKLFEVGNLLKHID----PVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 8 q~~~l~~~~~Iii~TP~~l~~~l~~~~~--~~~~l~~lViDE~d~ll~~~~~~~~i~----~i~~~~~~~~~q~i~~SAT 81 (178)
+.++++++|+|+|+|||++..++..... .+++++++|+||+|.+.+.. ....+. ++... .+...|++++|||
T Consensus 139 r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~-RG~~l~~~L~rL~~l-~~~~~q~IglSAT 216 (876)
T PRK13767 139 KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK-RGVHLSLSLERLEEL-AGGEFVRIGLSAT 216 (876)
T ss_pred HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc-cHHHHHHHHHHHHHh-cCCCCeEEEEecc
Confidence 4456677899999999999888865543 47899999999999998765 444443 33343 4467899999999
Q ss_pred CcHH--HHHHHHHhc----cCcEEEEEcCCccccCCceEE-----EEEcCCh---hhHHHHHHHHHHhcCCCCEEEEeCC
Q 030396 82 LPDF--VEELARSIM----HDAVRVIVGRKNTASESIKQK-----LVFAGSE---EGKLLALRQSFAESLNPPVLIFVQS 147 (178)
Q Consensus 82 ~~~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~i~~~-----~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~t 147 (178)
+++. +..++.... ..+..+. .........+... ....... ......+.++++. .+++||||||
T Consensus 217 l~~~~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nT 293 (876)
T PRK13767 217 IEPLEEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNT 293 (876)
T ss_pred cCCHHHHHHHhcCccccCCCCceEEE-ccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 9863 222222211 1122221 1111111111000 0011111 1223444444443 4789999999
Q ss_pred chHHHHHHHHhhh------CCCceEeeecCCCcccc
Q 030396 148 KDRAKELYGELAF------DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 148 ~~~~~~l~~~L~~------~g~~~~~lh~~~~~~~R 177 (178)
++.|+.++..|.+ .+..+..+||+|++++|
T Consensus 294 r~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 294 RSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred HHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 9999999999976 25789999999999987
No 47
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.81 E-value=7.3e-20 Score=144.45 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=107.2
Q ss_pred CCcEEEeCcHHHHHHHHcCC----CCC--CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 15 SCDILISTPLRLRLAIRRKK----IDL--SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~----~~~--~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
.++|+|+||+++...+..+. ..+ -..+++|+||+|.+.+.+ +. .+..+++.+...+.|++++|||+|+.+.+
T Consensus 94 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~-~~-~l~~~l~~l~~~~~~~i~~SATlp~~l~~ 171 (358)
T TIGR01587 94 LDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT-LA-LILAVLEVLKDNDVPILLMSATLPKFLKE 171 (358)
T ss_pred hCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH-HH-HHHHHHHHHHHcCCCEEEEecCchHHHHH
Confidence 36799999999998776521 111 123799999999998865 33 36666666334578999999999987777
Q ss_pred HHHHhccCcEEEEEcCCccccCCceEEEEEc-CChhhHHHHHHHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhCCC--c
Q 030396 89 LARSIMHDAVRVIVGRKNTASESIKQKLVFA-GSEEGKLLALRQSFAES-LNPPVLIFVQSKDRAKELYGELAFDDI--R 164 (178)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~-~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~--~ 164 (178)
+...+...+.......... .....+.+..+ .....+...+..+++.. ..+++||||||+++|+.++..|.+.+. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~ 250 (358)
T TIGR01587 172 YAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEE 250 (358)
T ss_pred HHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCe
Confidence 7666544321111111100 00112333222 22234556666666543 467999999999999999999988876 5
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++.+|
T Consensus 251 ~~~~h~~~~~~~r 263 (358)
T TIGR01587 251 IMLLHSRFTEKDR 263 (358)
T ss_pred EEEEECCCCHHHH
Confidence 9999999999877
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=99.81 E-value=3e-19 Score=152.08 Aligned_cols=154 Identities=19% Similarity=0.144 Sum_probs=108.8
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
+.++|+|+||+++..+++++...+++++++|+||+|.+.+.+ +.+.++.++.. +..+.|++++|||+++. .++. .|
T Consensus 113 ~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~-rg~~le~il~~-l~~~~qiI~lSATl~n~-~~la-~w 188 (720)
T PRK00254 113 GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD-RGATLEMILTH-MLGRAQILGLSATVGNA-EELA-EW 188 (720)
T ss_pred ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc-chHHHHHHHHh-cCcCCcEEEEEccCCCH-HHHH-HH
Confidence 468999999999999998877778999999999999998887 89999999999 77889999999999863 4443 35
Q ss_pred ccCcEEEEEcCCccccCCc-----eEEEEEcCCh------hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC-
Q 030396 94 MHDAVRVIVGRKNTASESI-----KQKLVFAGSE------EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD- 161 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i-----~~~~~~~~~~------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~- 161 (178)
++.+.... ...+..+ .+.+....+. ......+.+.++. .+++||||||++.|+.++..|...
T Consensus 189 l~~~~~~~----~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~ 262 (720)
T PRK00254 189 LNAELVVS----DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKI 262 (720)
T ss_pred hCCccccC----CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHH
Confidence 55332111 1111111 1112222221 1112334444443 579999999999999988777421
Q ss_pred --------------------------------CCceEeeecCCCcccc
Q 030396 162 --------------------------------DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 --------------------------------g~~~~~lh~~~~~~~R 177 (178)
+..+..+||+|++++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 263 KRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 2358999999999988
No 49
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.81 E-value=1.4e-18 Score=148.45 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=114.8
Q ss_pred ccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccc-ccccCCChh-hHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADK-LFEVGNLLK-HIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~-ll~~~~~~~-~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
.+.+.+|+|+|||+|++++... .++++++++||||+|. .++.+ +.- .+..+.+. ++.+.|+++||||++...
T Consensus 87 ~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~D-l~L~ll~~i~~~-lr~dlqlIlmSATl~~~~--- 160 (819)
T TIGR01970 87 VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDAD-LGLALALDVQSS-LREDLKILAMSATLDGER--- 160 (819)
T ss_pred cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccc-hHHHHHHHHHHh-cCCCceEEEEeCCCCHHH---
Confidence 3456899999999999998764 5799999999999995 67655 433 34556666 678899999999999653
Q ss_pred HHHhccCcEEEEEcCCccccCCceEEEEEcCChhhH----HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh---CC
Q 030396 90 ARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGK----LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF---DD 162 (178)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~---~g 162 (178)
+..++.++..+.+.... ..+.++|......... ...+..+++. ..+++||||++..+++.+++.|.+ .+
T Consensus 161 l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~ 236 (819)
T TIGR01970 161 LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSD 236 (819)
T ss_pred HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCC
Confidence 46677776666554322 2355666544332211 2334444444 367899999999999999999987 48
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+.+..+||+|++++|
T Consensus 237 ~~v~pLHg~L~~~eq 251 (819)
T TIGR01970 237 VLICPLYGELSLAAQ 251 (819)
T ss_pred cEEEEecCCCCHHHH
Confidence 999999999999876
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.81 E-value=1.4e-18 Score=156.17 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=116.5
Q ss_pred hccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccccc-----------CCChhhHHH----HHh--------
Q 030396 11 LSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV-----------GNLLKHIDP----VVK-------- 66 (178)
Q Consensus 11 ~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~-----------~~~~~~i~~----i~~-------- 66 (178)
.+.+ .++|+|+|||+|.+.+... .. .+++++|+||||.++++ | |.+++.. |++
T Consensus 173 ~l~~g~~dILV~TPgrL~~~~~~l-~~-~~i~~iVVDEAD~ml~~~knid~~L~llG-F~~e~~~~~~~il~~~~~~~~~ 249 (1638)
T PRK14701 173 RIENGDFDILVTTAQFLARNFPEM-KH-LKFDFIFVDDVDAFLKASKNIDRSLQLLG-FYEEIIEKAWKIIYLKKQGNIE 249 (1638)
T ss_pred HHhcCCCCEEEECCchhHHhHHHH-hh-CCCCEEEEECceeccccccccchhhhcCC-ChHHHHHHHHHhhhcccccccc
Confidence 3444 5999999999999877642 22 77999999999999873 5 8888875 432
Q ss_pred --------------hCCCCCce-EEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHH
Q 030396 67 --------------ACSNPSIV-RSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQ 131 (178)
Q Consensus 67 --------------~~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 131 (178)
. .+...| .+++|||.++. .....+++++..+.++.......++.|.++.+. ...+ ..+.+
T Consensus 250 ~~~~~~~~l~~~~~~-~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~-~~~k-~~L~~ 324 (1638)
T PRK14701 250 DAMEKREILNKEIEK-IGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE-KIIK-EHVRE 324 (1638)
T ss_pred hhhhhhhhhhhhhhh-cCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC-HHHH-HHHHH
Confidence 1 234455 67799999964 112244577888888887778888999887653 3334 57888
Q ss_pred HHHhcCCCCEEEEeCCchH---HHHHHHHhhhCCCceEeeecCC
Q 030396 132 SFAESLNPPVLIFVQSKDR---AKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 132 ll~~~~~~~~lIF~~t~~~---~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
+++.. ..++||||+|++. |+.+++.|.+.|+++..+||+.
T Consensus 325 ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R 367 (1638)
T PRK14701 325 LLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKN 367 (1638)
T ss_pred HHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchH
Confidence 88876 5789999999886 4899999999999999999974
No 51
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.80 E-value=6.4e-19 Score=141.29 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=123.2
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC--CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG--NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~--~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
..+||||||=+-+-.+++.+ -++.++..+|+||+|.|-+.. ...+=+-.-+++ +-+..|++.+|||..++ .+++.
T Consensus 314 ~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~-l~~~AQ~i~LSATVgNp-~elA~ 390 (830)
T COG1202 314 PDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY-LFPGAQFIYLSATVGNP-EELAK 390 (830)
T ss_pred CCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHH-hCCCCeEEEEEeecCCh-HHHHH
Confidence 46899999999998889887 689999999999999997643 333334444555 55799999999999876 56666
Q ss_pred HhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhc--------CCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES--------LNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--------~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.+...++...- .|-.+..+.+++.++.+|-+.+..+.+.. -.+|+|||+||++.|..+++.|...|+
T Consensus 391 ~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~ 465 (830)
T COG1202 391 KLGAKLVLYDE-----RPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGL 465 (830)
T ss_pred HhCCeeEeecC-----CCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCc
Confidence 66555443322 22334556778888889989888888632 266999999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
++..+|+||++.+|
T Consensus 466 ~a~pYHaGL~y~eR 479 (830)
T COG1202 466 KAAPYHAGLPYKER 479 (830)
T ss_pred ccccccCCCcHHHH
Confidence 99999999999887
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.80 E-value=5.2e-19 Score=150.98 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=106.0
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC--CCCCceEEEEeecCcHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
+.++|+|+|||++..+++++...+++++++|+||+|.+.+.+ +.+.++.++..+ .+++.|++++|||+++. .++ .
T Consensus 112 ~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~-rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~l-a 188 (737)
T PRK02362 112 GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSAN-RGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DEL-A 188 (737)
T ss_pred CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCc-chHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHH-H
Confidence 458999999999999998876678999999999999998877 888888776652 35689999999999853 222 2
Q ss_pred HhccC--------cEEEEE--cCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 92 SIMHD--------AVRVIV--GRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 92 ~~~~~--------~~~v~~--~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
.|++. |..+.. .........-.+..+...........+.+.+. ..+++||||+|++.|+.++..|...
T Consensus 189 ~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 189 DWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred HHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHH
Confidence 33331 111110 00000000001111111122234444555444 3589999999999999999888643
Q ss_pred C------------------------------------CceEeeecCCCcccc
Q 030396 162 D------------------------------------IRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 g------------------------------------~~~~~lh~~~~~~~R 177 (178)
. ..++.+||||++++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR 318 (737)
T PRK02362 267 LKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHR 318 (737)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHH
Confidence 1 368899999999987
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=3.8e-19 Score=145.17 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=121.5
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHHHHHhhC--CCCCceEEEEeecCcHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDPVVKAC--SNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~--~~~~~q~i~~SAT~~~~~~~~ 89 (178)
....+++.-+|+++..---...+.-.++..+||||||++.+|| +|++++.++-... + ++..++++|||.++.+.+.
T Consensus 105 ~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~-~~~p~~AlTATA~~~v~~D 183 (590)
T COG0514 105 SGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL-PNPPVLALTATATPRVRDD 183 (590)
T ss_pred cCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC-CCCCEEEEeCCCChHHHHH
Confidence 3458999999999885433333346778899999999999998 8999999986653 2 3789999999999998887
Q ss_pred HHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEe
Q 030396 90 ARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 90 ~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~ 167 (178)
+...+. ++..+. .+...+++...++...+...+...+.+ ......+..||||.|++.|+.++++|...|+++..
T Consensus 184 I~~~L~l~~~~~~~---~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~ 259 (590)
T COG0514 184 IREQLGLQDANIFR---GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGA 259 (590)
T ss_pred HHHHhcCCCcceEE---ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEE
Confidence 777655 332332 334556665555444334445554443 22455677999999999999999999999999999
Q ss_pred eecCCCcccc
Q 030396 168 IHSDLSQTQV 177 (178)
Q Consensus 168 lh~~~~~~~R 177 (178)
|||||+.++|
T Consensus 260 YHaGl~~~eR 269 (590)
T COG0514 260 YHAGLSNEER 269 (590)
T ss_pred ecCCCCHHHH
Confidence 9999999887
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.79 E-value=3e-18 Score=146.49 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=113.7
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccc-ccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADK-LFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~-ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
.+..+|+|+|||+|++++... ..+++++++||||+|. .++.+-....+..+.+. ++.+.|++++|||++.. ...
T Consensus 91 ~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~-lr~~lqlilmSATl~~~---~l~ 165 (812)
T PRK11664 91 GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQG-LRDDLKLLIMSATLDND---RLQ 165 (812)
T ss_pred CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHh-CCccceEEEEecCCCHH---HHH
Confidence 345689999999999998764 5799999999999997 34443123445566676 67889999999999965 235
Q ss_pred HhccCcEEEEEcCCccccCCceEEEEEcCChhhHHH-----HHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh---CCC
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLL-----ALRQSFAESLNPPVLIFVQSKDRAKELYGELAF---DDI 163 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~---~g~ 163 (178)
.++.++..+..... ...+.++|..... .++.. .+..+++. ..+.+||||++.++++.+++.|.+ .++
T Consensus 166 ~~~~~~~~I~~~gr---~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~ 240 (812)
T PRK11664 166 QLLPDAPVIVSEGR---SFPVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDV 240 (812)
T ss_pred HhcCCCCEEEecCc---cccceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCc
Confidence 67776666655432 2236666654433 33332 34444443 368899999999999999999987 588
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
.+..+||+|++++|
T Consensus 241 ~v~~Lhg~l~~~eq 254 (812)
T PRK11664 241 LLCPLYGALSLAEQ 254 (812)
T ss_pred eEEEeeCCCCHHHH
Confidence 99999999998765
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.79 E-value=3.6e-18 Score=143.04 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=109.2
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
++.+|+|+||+. ...++++++++|+||||.+...+ +.+..+++...+..+|+++||||++.++..+ ..+
T Consensus 273 k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~---DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~ 341 (675)
T PHA02653 273 KPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG---DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEF 341 (675)
T ss_pred CCCCEEEEeCcc-------cccccccCCEEEccccccCccch---hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHH
Confidence 467999999862 12357899999999999997765 4556666653444569999999999888776 678
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCC---------hhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhC-
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGS---------EEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFD- 161 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~---------~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~- 161 (178)
+++|..+.++. .....+.+.++.... ...+...+..+.+. ...+++||||+++++|+.+++.|.+.
T Consensus 342 ~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~ 419 (675)
T PHA02653 342 FPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL 419 (675)
T ss_pred hcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc
Confidence 89998888753 334567776654321 12232333333222 23468999999999999999999887
Q ss_pred -CCceEeeecCCCccc
Q 030396 162 -DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 162 -g~~~~~lh~~~~~~~ 176 (178)
|+++..+||+|++.+
T Consensus 420 ~~~~v~~LHG~Lsq~e 435 (675)
T PHA02653 420 PIYDFYIIHGKVPNID 435 (675)
T ss_pred CCceEEeccCCcCHHH
Confidence 799999999999853
No 56
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.78 E-value=7.8e-18 Score=147.52 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=109.5
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccc-cccccCCChh-hHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEAD-KLFEVGNLLK-HIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d-~ll~~~~~~~-~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
.++++|+++|||+|++.+.... .+++++++|+|||| .+++.+ |.. .+..++.. .++.|++++|||++. ..+.
T Consensus 161 s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~D-fLLg~Lk~lL~~--rpdlKvILmSATid~--e~fs 234 (1294)
T PRK11131 161 SDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNID-FILGYLKELLPR--RPDLKVIITSATIDP--ERFS 234 (1294)
T ss_pred CCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccc-hHHHHHHHhhhc--CCCceEEEeeCCCCH--HHHH
Confidence 4678999999999999987654 48999999999999 577777 654 34444432 257899999999985 3555
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCCh-----hhHHHHHHHHHH---hcCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSE-----EGKLLALRQSFA---ESLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~ll~---~~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
+.|.+.| .+.+.... ..+.++|...... .+....+.+.+. ....+++||||++..+++.+++.|.+.|
T Consensus 235 ~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~ 310 (1294)
T PRK11131 235 RHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLN 310 (1294)
T ss_pred HHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcC
Confidence 5555555 45554322 2245555444221 123333333322 2346789999999999999999999887
Q ss_pred Cc---eEeeecCCCcccc
Q 030396 163 IR---AGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~---~~~lh~~~~~~~R 177 (178)
++ +..+||+|++++|
T Consensus 311 ~~~~~VlpLhg~Ls~~eQ 328 (1294)
T PRK11131 311 LRHTEILPLYARLSNSEQ 328 (1294)
T ss_pred CCcceEeecccCCCHHHH
Confidence 75 6789999999876
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.78 E-value=1.1e-17 Score=147.05 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=109.9
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
++++||||||+.+ .+.+.+++++++|+||+|.+ | +. ....++. ++.+.|++++|||.++....+....
T Consensus 702 g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf---G-~~--~~e~lk~-l~~~~qvLl~SATpiprtl~l~~~g 769 (1147)
T PRK10689 702 GKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF---G-VR--HKERIKA-MRADVDILTLTATPIPRTLNMAMSG 769 (1147)
T ss_pred CCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc---c-hh--HHHHHHh-cCCCCcEEEEcCCCCHHHHHHHHhh
Confidence 4699999999633 24567889999999999997 4 22 2344566 6789999999999888877777778
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC--CCceEeeecC
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD--DIRAGVIHSD 171 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~--g~~~~~lh~~ 171 (178)
+.++..+...+.. ...+.+.+........+...+.++. ..++++||||+++.++.+++.|.+. ++++..+||+
T Consensus 770 l~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~ 844 (1147)
T PRK10689 770 MRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 (1147)
T ss_pred CCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 8888877665433 2345555544433333434444443 2478999999999999999999887 7899999999
Q ss_pred CCcccc
Q 030396 172 LSQTQV 177 (178)
Q Consensus 172 ~~~~~R 177 (178)
|++++|
T Consensus 845 m~q~eR 850 (1147)
T PRK10689 845 MREREL 850 (1147)
T ss_pred CCHHHH
Confidence 999887
No 58
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=2.3e-17 Score=130.11 Aligned_cols=161 Identities=14% Similarity=-0.006 Sum_probs=108.0
Q ss_pred CCCcEEEeCcHHHHHHHHcCC----C----CCCCeeEEEEeccccccccC-CChh---hHHHHHhhCCCCCceEEEEeec
Q 030396 14 FSCDILISTPLRLRLAIRRKK----I----DLSRVEYLVLDEADKLFEVG-NLLK---HIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~----~----~~~~l~~lViDE~d~ll~~~-~~~~---~i~~i~~~~~~~~~q~i~~SAT 81 (178)
+.|+|+++||+.+..+++... . .+.+++++|+||+|.+-.++ .... ....+++. .....+++++|||
T Consensus 112 ~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~i~lSAT 190 (357)
T TIGR03158 112 STPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRF-FECRRKFVFLSAT 190 (357)
T ss_pred CCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHh-hhcCCcEEEEecC
Confidence 579999999999887765321 1 15799999999999986443 1111 23334444 3345799999999
Q ss_pred CcHHHHHHHHHh--ccCcEEEEEcCCc------------------cccCCceEEEEEcCChhhHHHHHHHHHH-------
Q 030396 82 LPDFVEELARSI--MHDAVRVIVGRKN------------------TASESIKQKLVFAGSEEGKLLALRQSFA------- 134 (178)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~v~~~~~~------------------~~~~~i~~~~~~~~~~~~k~~~l~~ll~------- 134 (178)
+++.+.+.+... ++.|..+..+..- ...+.+.+.+.. ....|...+..+++
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~ 268 (357)
T TIGR03158 191 PDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFR 268 (357)
T ss_pred CCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHh
Confidence 999988887765 5555433332200 011256665544 22233333333222
Q ss_pred hcCCCCEEEEeCCchHHHHHHHHhhhCC--CceEeeecCCCcccc
Q 030396 135 ESLNPPVLIFVQSKDRAKELYGELAFDD--IRAGVIHSDLSQTQV 177 (178)
Q Consensus 135 ~~~~~~~lIF~~t~~~~~~l~~~L~~~g--~~~~~lh~~~~~~~R 177 (178)
....+++||||||++.|+.++..|++.| +++..+||.+++.+|
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 2346799999999999999999998865 688999999999877
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=141.04 Aligned_cols=165 Identities=21% Similarity=0.193 Sum_probs=115.3
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCC--CCCCeeEEEEeccccccccC--CChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKI--DLSRVEYLVLDEADKLFEVG--NLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~--~~~~l~~lViDE~d~ll~~~--~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
+..++.+++|||+|+|||.|.-++..+.+ .+++++++|+||+|.+.++. .....-..-++.+.+ +.|.+.+|||.
T Consensus 115 er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV 193 (814)
T COG1201 115 EKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATV 193 (814)
T ss_pred HhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhcc
Confidence 34456778999999999999888876443 48999999999999998664 333333333444244 99999999999
Q ss_pred cHHHHHHHHHhccC--cEEEEEcCCccccCCceEEEEEcCCh--------hhHHHHHHHHHHhcCCCCEEEEeCCchHHH
Q 030396 83 PDFVEELARSIMHD--AVRVIVGRKNTASESIKQKLVFAGSE--------EGKLLALRQSFAESLNPPVLIFVQSKDRAK 152 (178)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~i~~~~~~~~~~--------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~ 152 (178)
.+. .+..+...+. +..+....... .....++..... ......+.++++++ ..++||+||+..|+
T Consensus 194 ~~~-~~varfL~g~~~~~~Iv~~~~~k---~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE 267 (814)
T COG1201 194 GPP-EEVAKFLVGFGDPCEIVDVSAAK---KLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAE 267 (814)
T ss_pred CCH-HHHHHHhcCCCCceEEEEcccCC---cceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHH
Confidence 854 3333333333 44444332222 122223222222 23456666666666 59999999999999
Q ss_pred HHHHHhhhCC-CceEeeecCCCccccC
Q 030396 153 ELYGELAFDD-IRAGVIHSDLSQTQVF 178 (178)
Q Consensus 153 ~l~~~L~~~g-~~~~~lh~~~~~~~R~ 178 (178)
.++..|.+.+ .++...||.++.++|.
T Consensus 268 ~l~~~L~~~~~~~i~~HHgSlSre~R~ 294 (814)
T COG1201 268 RLAFRLKKLGPDIIEVHHGSLSRELRL 294 (814)
T ss_pred HHHHHHHHhcCCceeeecccccHHHHH
Confidence 9999999887 8999999999999873
No 60
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=6.7e-19 Score=138.88 Aligned_cols=173 Identities=25% Similarity=0.326 Sum_probs=131.3
Q ss_pred hHhHHhHHhccC-CC----cEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCC-----
Q 030396 3 KELVRSTDLSKF-SC----DILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNP----- 71 (178)
Q Consensus 3 ~~~~~q~~~l~~-~~----~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~----- 71 (178)
+.++.+.++|.+ .+ ||+|+|||||.+++.. +.+++++++|+|+||||+|++.. |.+-+..++..+...
T Consensus 253 ~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs-fQ~Wl~~v~~~~~~~k~~~~ 331 (620)
T KOG0350|consen 253 NSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS-FQEWLDTVMSLCKTMKRVAC 331 (620)
T ss_pred cchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHH-HHHHHHHHHHHhCCchhhcC
Confidence 445555665554 34 8999999999999985 88999999999999999999876 555444444442111
Q ss_pred ----------------------------CceEEEEeecCcHHHHHHHHHhccCcEEEEEc----CCccccCCceEEEEEc
Q 030396 72 ----------------------------SIVRSLFSATLPDFVEELARSIMHDAVRVIVG----RKNTASESIKQKLVFA 119 (178)
Q Consensus 72 ----------------------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~i~~~~~~~ 119 (178)
..+.+++|||++.+-..+...-++.|....+. .....+..+.|+.+.+
T Consensus 332 ~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~ 411 (620)
T KOG0350|consen 332 LDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVT 411 (620)
T ss_pred hhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeec
Confidence 13477899999987778888888888555554 3345666777777666
Q ss_pred CChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhh----hCCCceEeeecCCCcccc
Q 030396 120 GSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELA----FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 120 ~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~----~~g~~~~~lh~~~~~~~R 177 (178)
.. .-|--.+..++......++|+|+|+.+.+.+++..|. ...+++..+.|++++..|
T Consensus 412 ~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r 472 (620)
T KOG0350|consen 412 EP-KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRR 472 (620)
T ss_pred cc-ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHH
Confidence 44 3466777788888889999999999999999999886 446788889999988776
No 61
>PRK01172 ski2-like helicase; Provisional
Probab=99.75 E-value=6.3e-18 Score=143.24 Aligned_cols=157 Identities=20% Similarity=0.202 Sum_probs=103.5
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC--CCCCceEEEEeecCcHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
+.++|+|+|||++..+++++...+.+++++|+||+|.+.+.+ +.+.++.++..+ .++..|++++|||+++. .++.
T Consensus 110 ~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~-rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la- 186 (674)
T PRK01172 110 KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED-RGPTLETVLSSARYVNPDARILALSATVSNA-NELA- 186 (674)
T ss_pred ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCC-ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHH-
Confidence 468999999999999988876678999999999999998776 777777765542 45689999999999853 3433
Q ss_pred HhccCcEEEEEcCCccccCCceEEEE-----EcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCC--
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLV-----FAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDD-- 162 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~-----~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g-- 162 (178)
.|++.+... . ...+..+...+. ...........+..++.. ...+++||||+|+++|+.++..|.+..
T Consensus 187 ~wl~~~~~~-~---~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~ 262 (674)
T PRK01172 187 QWLNASLIK-S---NFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPE 262 (674)
T ss_pred HHhCCCccC-C---CCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhh
Confidence 354432111 0 001111111110 111111111112233332 236799999999999999999886531
Q ss_pred -----------------------CceEeeecCCCcccc
Q 030396 163 -----------------------IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 -----------------------~~~~~lh~~~~~~~R 177 (178)
..+..+||+|++++|
T Consensus 263 ~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR 300 (674)
T PRK01172 263 FNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQR 300 (674)
T ss_pred cccccccccccccccHHHHHHHhcCEEEecCCCCHHHH
Confidence 247889999999987
No 62
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.74 E-value=1e-16 Score=138.44 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=107.2
Q ss_pred HHhHHhccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 6 VRSTDLSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 6 ~~q~~~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.++.+.++. .++||||||. + + .+.+.+++++++|+||+|.+ | ......++. ++.+.|++++|||..+
T Consensus 544 ~~~~~~l~~g~~dIVIGTp~-l---l-~~~v~f~~L~llVIDEahrf---g---v~~~~~L~~-~~~~~~vL~~SATpip 611 (926)
T TIGR00580 544 NEILKELASGKIDILIGTHK-L---L-QKDVKFKDLGLLIIDEEQRF---G---VKQKEKLKE-LRTSVDVLTLSATPIP 611 (926)
T ss_pred HHHHHHHHcCCceEEEchHH-H---h-hCCCCcccCCEEEeeccccc---c---hhHHHHHHh-cCCCCCEEEEecCCCH
Confidence 344444544 5999999994 2 2 35578899999999999996 2 223445566 6678999999999877
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC--C
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD--D 162 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~--g 162 (178)
...........++..+...+.. ...+..++.... ...-...+..-+. ..++++||||++++++.+++.|.+. +
T Consensus 612 rtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~-~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~ 686 (926)
T TIGR00580 612 RTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD-PELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPE 686 (926)
T ss_pred HHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC-HHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCC
Confidence 6555555556677766654433 223555554332 2111222222222 3579999999999999999999885 7
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+++..+||+|++++|
T Consensus 687 ~~v~~lHG~m~~~eR 701 (926)
T TIGR00580 687 ARIAIAHGQMTENEL 701 (926)
T ss_pred CeEEEecCCCCHHHH
Confidence 899999999999887
No 63
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.65 E-value=4.8e-15 Score=130.50 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=108.7
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccc-cccccCCChh-hHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEAD-KLFEVGNLLK-HIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d-~ll~~~~~~~-~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
+.+.+|+++|||+|+..+.... .+++++++|||||| ..++.+ +.- .+..++.. .++.|++++|||++. ..+.
T Consensus 154 s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D-~LL~lLk~il~~--rpdLKlIlmSATld~--~~fa 227 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNID-FLLGYLKQLLPR--RPDLKIIITSATIDP--ERFS 227 (1283)
T ss_pred CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccch-hHHHHHHHHHhh--CCCCeEEEEeCCcCH--HHHH
Confidence 4567899999999999887654 48899999999999 488877 554 36666654 357899999999984 4555
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCC-----hhhHHHHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGS-----EEGKLLALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~-----~~~k~~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
+.|.+.| .+.+..... .+..+|..... ..++...+.+.+.. ...+.+|||+++..+++.+++.|.+.+
T Consensus 228 ~~F~~ap-vI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~ 303 (1283)
T TIGR01967 228 RHFNNAP-IIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRN 303 (1283)
T ss_pred HHhcCCC-EEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcC
Confidence 5554455 354543222 23334433221 11233444444432 246889999999999999999998775
Q ss_pred C---ceEeeecCCCcccc
Q 030396 163 I---RAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~---~~~~lh~~~~~~~R 177 (178)
+ .+..+||+|++++|
T Consensus 304 ~~~~~VlpLhg~Ls~~eQ 321 (1283)
T TIGR01967 304 LRHTEILPLYARLSNKEQ 321 (1283)
T ss_pred CCCcEEEeccCCCCHHHH
Confidence 4 58899999998875
No 64
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.63 E-value=1.9e-14 Score=122.03 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=94.9
Q ss_pred hHHhccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 8 STDLSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 8 q~~~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+.+.+.+ .++|+||||+++.+ ...+++++++|+||+|.+... ....+.. .....+++++|||..+..
T Consensus 356 ~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~------qr~~l~~-~~~~~~iL~~SATp~prt 423 (681)
T PRK10917 356 ILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE------QRLALRE-KGENPHVLVMTATPIPRT 423 (681)
T ss_pred HHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH------HHHHHHh-cCCCCCEEEEeCCCCHHH
Confidence 3344444 59999999988743 346789999999999997322 2233334 445789999999976653
Q ss_pred HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCc--------hHHHHHHHHh
Q 030396 87 EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSK--------DRAKELYGEL 158 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~--------~~~~~l~~~L 158 (178)
..+......++..+...+ .....+...++.......-...+.+.+ ....+++|||++. ..++.+++.|
T Consensus 424 l~~~~~g~~~~s~i~~~p--~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L 499 (681)
T PRK10917 424 LAMTAYGDLDVSVIDELP--PGRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEEL 499 (681)
T ss_pred HHHHHcCCCceEEEecCC--CCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHH
Confidence 333221111333332222 222335554433322222223333333 2357999999954 4567778888
Q ss_pred hhC--CCceEeeecCCCcccc
Q 030396 159 AFD--DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 159 ~~~--g~~~~~lh~~~~~~~R 177 (178)
.+. ++++..+||+|++++|
T Consensus 500 ~~~~~~~~v~~lHG~m~~~eR 520 (681)
T PRK10917 500 QEAFPELRVGLLHGRMKPAEK 520 (681)
T ss_pred HHHCCCCcEEEEeCCCCHHHH
Confidence 765 5799999999999887
No 65
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.61 E-value=5.7e-15 Score=107.71 Aligned_cols=90 Identities=39% Similarity=0.579 Sum_probs=81.6
Q ss_pred HHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 9 TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 9 ~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
...+.++++|+|+||+++.+++.++..++.+++++|+||+|.+.+.+ +...+..+.+. ++...|++++|||+++++..
T Consensus 113 ~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~-~~~~~~~~~~~-l~~~~~~~~~SAT~~~~~~~ 190 (203)
T cd00268 113 IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG-FEDQIREILKL-LPKDRQTLLFSATMPKEVRD 190 (203)
T ss_pred HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC-hHHHHHHHHHh-CCcccEEEEEeccCCHHHHH
Confidence 34445689999999999999999888889999999999999998877 99999999999 77899999999999999999
Q ss_pred HHHHhccCcEEE
Q 030396 89 LARSIMHDAVRV 100 (178)
Q Consensus 89 ~~~~~~~~~~~v 100 (178)
++..++.+|..+
T Consensus 191 ~~~~~~~~~~~~ 202 (203)
T cd00268 191 LARKFLRNPVRI 202 (203)
T ss_pred HHHHHCCCCEEe
Confidence 999999998776
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.61 E-value=2.9e-15 Score=123.06 Aligned_cols=153 Identities=9% Similarity=0.068 Sum_probs=97.4
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH--HHH
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL--ARS 92 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~--~~~ 92 (178)
+++|+|+||+++.+... ..+++++++|+||||.+.... +..++.. .+..+|++++|||.+...... ...
T Consensus 201 ~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~-----~~~il~~-~~~~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 201 DAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS-----LTSIITK-LDNCKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred CCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh-----HHHHHHh-hhccceEEEEeccCCCccccHHHHHH
Confidence 47899999999875432 246789999999999996544 6677777 666789999999997532111 111
Q ss_pred hccCcEEEEEcCCccc------cCCceEEEE--------------------EcCChhhHHHHHHHHHHh--cCCCCEEEE
Q 030396 93 IMHDAVRVIVGRKNTA------SESIKQKLV--------------------FAGSEEGKLLALRQSFAE--SLNPPVLIF 144 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~------~~~i~~~~~--------------------~~~~~~~k~~~l~~ll~~--~~~~~~lIF 144 (178)
+++ |....+...... ...+..... ...+...+...+.++... ....+++||
T Consensus 272 ~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~ 350 (501)
T PHA02558 272 LFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVM 350 (501)
T ss_pred hhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 222 111111100000 000000000 011122344445544432 235789999
Q ss_pred eCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 145 VQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 145 ~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
|++.++|+.+++.|.+.|+++..+||+|++++|
T Consensus 351 ~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR 383 (501)
T PHA02558 351 FKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDR 383 (501)
T ss_pred EEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 999999999999999999999999999999987
No 67
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.60 E-value=8.2e-15 Score=125.92 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=118.7
Q ss_pred CCcEEEeCcHHHHHH--HHcCCCCCCC---eeEEEEeccccccccC-CChhhHHHHHhhCC-CCCceEEEEeecCcHHHH
Q 030396 15 SCDILISTPLRLRLA--IRRKKIDLSR---VEYLVLDEADKLFEVG-NLLKHIDPVVKACS-NPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~--l~~~~~~~~~---l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~-~~~~q~i~~SAT~~~~~~ 87 (178)
..+|+..||+.+... +.....++.. +..+|+||||+..+|| +|++++.++..... .....+++++||.+..++
T Consensus 356 ~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~ 435 (941)
T KOG0351|consen 356 IIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVR 435 (941)
T ss_pred eEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHH
Confidence 589999999998743 2222223333 8999999999999998 99999999755421 134789999999999988
Q ss_pred HHHHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHH-hcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 88 ELARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA-ESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 88 ~~~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
+-+-..++ +|. +......++|+...+. .....+....+.+..+ ....+.+||||.++.+|+.++..|...|++
T Consensus 436 ~DIi~~L~l~~~~---~~~~sfnR~NL~yeV~-~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~ 511 (941)
T KOG0351|consen 436 EDVIRSLGLRNPE---LFKSSFNRPNLKYEVS-PKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS 511 (941)
T ss_pred HHHHHHhCCCCcc---eecccCCCCCceEEEE-eccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh
Confidence 87766655 554 3345567777766663 3232233333333333 456778999999999999999999999999
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..||+||+..+|
T Consensus 512 a~~YHAGl~~~~R 524 (941)
T KOG0351|consen 512 AAFYHAGLPPKER 524 (941)
T ss_pred hHhhhcCCCHHHH
Confidence 9999999999988
No 68
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.55 E-value=2.1e-13 Score=114.85 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred hHHhcc-CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCC--CCceEEEEeecCcH
Q 030396 8 STDLSK-FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN--PSIVRSLFSATLPD 84 (178)
Q Consensus 8 q~~~l~-~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~--~~~q~i~~SAT~~~ 84 (178)
+.+.+. +.++|+||||+.+.+ ...+++++++|+||+|.+.... .. .+... .. ...+++++|||..+
T Consensus 330 ~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q--r~---~l~~~-~~~~~~~~~l~~SATp~p 398 (630)
T TIGR00643 330 LLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ--RK---KLREK-GQGGFTPHVLVMSATPIP 398 (630)
T ss_pred HHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH--HH---HHHHh-cccCCCCCEEEEeCCCCc
Confidence 333444 468999999997753 3567899999999999973322 22 23333 22 26899999999765
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHH-h-cCCCCEEEEeCCc--------hHHHHH
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA-E-SLNPPVLIFVQSK--------DRAKEL 154 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~-~~~~~~lIF~~t~--------~~~~~l 154 (178)
....+ ....+.....+...+.....+...++.. ..+ ..+.+.+. . ....+++|||++. +.++.+
T Consensus 399 rtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~---~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~ 472 (630)
T TIGR00643 399 RTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKH---DEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEAL 472 (630)
T ss_pred HHHHH--HhcCCcceeeeccCCCCCCceEEEEeCc---chH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHH
Confidence 43222 1122211111111111122343433222 222 33333333 2 2357899999876 456677
Q ss_pred HHHhhh--CCCceEeeecCCCcccc
Q 030396 155 YGELAF--DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 155 ~~~L~~--~g~~~~~lh~~~~~~~R 177 (178)
++.|.+ .++++..+||+|++++|
T Consensus 473 ~~~L~~~~~~~~v~~lHG~m~~~eR 497 (630)
T TIGR00643 473 YERLKKAFPKYNVGLLHGRMKSDEK 497 (630)
T ss_pred HHHHHhhCCCCcEEEEeCCCCHHHH
Confidence 888865 37899999999999887
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.54 E-value=2.7e-13 Score=116.74 Aligned_cols=164 Identities=19% Similarity=0.208 Sum_probs=111.7
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcC----CCCCCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEEEEe
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRK----KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRSLFS 79 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~----~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i~~S 79 (178)
+.+.++|+||+++|..|..++-.. ...+++++++|+||+|.+- |.|..++.-+++.+ .+...|+++.|
T Consensus 162 ~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr--Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~S 239 (851)
T COG1205 162 AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR--GVQGSEVALLLRRLLRRLRRYGSPLQIICTS 239 (851)
T ss_pred HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc--ccchhHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 567789999999999999855332 2347889999999999993 33455554444443 44689999999
Q ss_pred ecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC--------hhhHHHHHHHHHHhc--CCCCEEEEeCCch
Q 030396 80 ATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS--------EEGKLLALRQSFAES--LNPPVLIFVQSKD 149 (178)
Q Consensus 80 AT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~--------~~~k~~~l~~ll~~~--~~~~~lIF~~t~~ 149 (178)
||+... .+....+++.+....+. ++..+...++++..-+. ...+...+..+.... ..-++|+|+.+++
T Consensus 240 AT~~np-~e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~ 317 (851)
T COG1205 240 ATLANP-GEFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRK 317 (851)
T ss_pred ccccCh-HHHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhh
Confidence 999977 45555565654444333 33444455554543330 123334444444322 3679999999999
Q ss_pred HHHHHH----HHhhhCC----CceEeeecCCCcccc
Q 030396 150 RAKELY----GELAFDD----IRAGVIHSDLSQTQV 177 (178)
Q Consensus 150 ~~~~l~----~~L~~~g----~~~~~lh~~~~~~~R 177 (178)
.++.+. ..+...| ..+..++|+|..++|
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er 353 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREER 353 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeeccccCCHHHH
Confidence 999997 5555555 689999999999887
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.49 E-value=2.3e-13 Score=115.81 Aligned_cols=144 Identities=23% Similarity=0.212 Sum_probs=92.7
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC--CCCCceEEEEeecCcHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
.+++|+|+||+++..++++.......++++|+||+|.+.+.. ..+.++.|+... .....|++.+|||+|+. .+++.
T Consensus 121 ~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~-RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~ 198 (766)
T COG1204 121 ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT-RGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVAD 198 (766)
T ss_pred ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc-cCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHH
Confidence 468999999999999999887788999999999999998874 466666666552 33458999999999974 33333
Q ss_pred HhccCcEEEEEcCCccccC-CceEEEEEcCChh------hHHHHHHHHHHh-cCCCCEEEEeCCchHHHHHHHHhh
Q 030396 92 SIMHDAVRVIVGRKNTASE-SIKQKLVFAGSEE------GKLLALRQSFAE-SLNPPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~-~i~~~~~~~~~~~------~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~ 159 (178)
..-.++..-...+.+.... ...+.+....... .....+...+.. ...++++|||+|++.+...|..|.
T Consensus 199 wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~ 274 (766)
T COG1204 199 WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274 (766)
T ss_pred HhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHH
Confidence 3322333111112211111 1222332222111 112222223332 235899999999999999999987
No 71
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.47 E-value=1.6e-13 Score=97.00 Aligned_cols=81 Identities=31% Similarity=0.432 Sum_probs=67.7
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCC-CCceEEEEeecCcHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN-PSIVRSLFSATLPDF 85 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~-~~~q~i~~SAT~~~~ 85 (178)
.+...+.++++|+|+||+++.+++..+..++.+++++|+||+|.+..++ +...+..|++.+.. .+.|++++|||+++.
T Consensus 87 ~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~-~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 87 DQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDET-FRAMLKSILRRLKRFKNIQIILLSATLPSN 165 (169)
T ss_dssp HHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTT-HHHHHHHHHHHSHTTTTSEEEEEESSSTHH
T ss_pred cccccccccccccccCcchhhccccccccccccceeeccCccccccccc-HHHHHHHHHHHhcCCCCCcEEEEeeCCChh
Confidence 3444556789999999999999999866688889999999999999987 88889999888422 368999999999976
Q ss_pred HHH
Q 030396 86 VEE 88 (178)
Q Consensus 86 ~~~ 88 (178)
++.
T Consensus 166 ~~~ 168 (169)
T PF00270_consen 166 VEK 168 (169)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.45 E-value=4.4e-12 Score=109.39 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=53.1
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
-.+++|+|+||+.+...+..+.+++.+++++|+||||.+.... ....+...... .....+++++|||-
T Consensus 105 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~-~~~~i~~~~~~-~~~~~~il~lTaTP 172 (773)
T PRK13766 105 WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNY-AYVYIAERYHE-DAKNPLVLGLTASP 172 (773)
T ss_pred HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccc-cHHHHHHHHHh-cCCCCEEEEEEcCC
Confidence 3467999999999998888888889999999999999997654 33334444443 44567899999996
No 73
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=3.8e-13 Score=114.35 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=100.8
Q ss_pred CCCcEEEeCcHHHHHHHHcC-CC---CCCCeeEEEEeccccccccCCChhhHHHHHhhCC------CCCceEEEEeecCc
Q 030396 14 FSCDILISTPLRLRLAIRRK-KI---DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACS------NPSIVRSLFSATLP 83 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~-~~---~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~------~~~~q~i~~SAT~~ 83 (178)
..++|||+||++ ++.+.++ .- -++.++++|+||+|.|-++. ++.++.|+.+.+ ....+++++|||+|
T Consensus 210 ~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R--GpvlEtiVaRtlr~vessqs~IRivgLSATlP 286 (1230)
T KOG0952|consen 210 ADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR--GPVLETIVARTLRLVESSQSMIRIVGLSATLP 286 (1230)
T ss_pred HhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeehhhcCcc--cchHHHHHHHHHHHHHhhhhheEEEEeeccCC
Confidence 368999999998 6666443 32 27899999999999997765 788888877632 14578999999999
Q ss_pred HHHHHHHHHhcc-C-cEEEEEcCCccccCCceEEEEEcCChh----------hHHHHHHHHHHhcCCCCEEEEeCCchHH
Q 030396 84 DFVEELARSIMH-D-AVRVIVGRKNTASESIKQKLVFAGSEE----------GKLLALRQSFAESLNPPVLIFVQSKDRA 151 (178)
Q Consensus 84 ~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~i~~~~~~~~~~~----------~k~~~l~~ll~~~~~~~~lIF~~t~~~~ 151 (178)
+- .++ -.|++ + +.-+........|--+.+.++.++..+ -......+++.+. .+++|||.+++.+
T Consensus 287 N~-eDv-A~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g--~qVlvFvhsR~~T 362 (1230)
T KOG0952|consen 287 NY-EDV-ARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEG--HQVLVFVHSRNET 362 (1230)
T ss_pred CH-HHH-HHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcC--CeEEEEEecChHH
Confidence 74 333 33444 3 355555566677777888887665541 1234444454444 8999999999999
Q ss_pred HHHHHHhhhC
Q 030396 152 KELYGELAFD 161 (178)
Q Consensus 152 ~~l~~~L~~~ 161 (178)
...|..|.+.
T Consensus 363 i~tA~~l~~~ 372 (1230)
T KOG0952|consen 363 IRTAKKLRER 372 (1230)
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 74
>PRK09694 helicase Cas3; Provisional
Probab=99.43 E-value=1.7e-12 Score=111.80 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=96.2
Q ss_pred CcEEEeCcHHHHHHHHc-CC-----CCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 16 CDILISTPLRLRLAIRR-KK-----IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~-~~-----~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..|+|||+..++...-. +. +.+. -+.+||||+|.+-. ++...+..+++.+......++++|||+|...++.
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La-~svvIiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~ 487 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLG-RSVLIVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQK 487 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhc-cCeEEEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHH
Confidence 68999999998854322 21 1222 25899999999932 2566677777764344677999999999887654
Q ss_pred -HHHhccC-c--------EEEEEcC--------Ccc-ccCCceEEEEEc-----CChhhHHHHHHHHHHh-cCCCCEEEE
Q 030396 90 -ARSIMHD-A--------VRVIVGR--------KNT-ASESIKQKLVFA-----GSEEGKLLALRQSFAE-SLNPPVLIF 144 (178)
Q Consensus 90 -~~~~~~~-~--------~~v~~~~--------~~~-~~~~i~~~~~~~-----~~~~~k~~~l~~ll~~-~~~~~~lIF 144 (178)
.+.+... + ....... ... ......+.+ .+ .........+..+++. ...++++||
T Consensus 488 L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf 566 (878)
T PRK09694 488 LLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTI-QLEPICLADMLPDLTLLQRMIAAANAGAQVCLI 566 (878)
T ss_pred HHHHhccccccccccccccccccccccceeeeccccccccCcceEE-EEEeeccccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 3333211 1 0000000 000 000011111 11 1111223334444443 335789999
Q ss_pred eCCchHHHHHHHHhhhCC---CceEeeecCCCcccc
Q 030396 145 VQSKDRAKELYGELAFDD---IRAGVIHSDLSQTQV 177 (178)
Q Consensus 145 ~~t~~~~~~l~~~L~~~g---~~~~~lh~~~~~~~R 177 (178)
|||+++|+.+++.|++.+ .++..+||.+++.+|
T Consensus 567 ~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 567 CNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred ECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 999999999999998765 689999999998877
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.43 E-value=1.8e-13 Score=107.12 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=113.9
Q ss_pred hccCCCcEEEeCcHHHHHHHH----cCCCCCCCeeEEEEeccccccccC-CChhhHHHHH--hhCCCCCceEEEEeecCc
Q 030396 11 LSKFSCDILISTPLRLRLAIR----RKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDPVV--KACSNPSIVRSLFSATLP 83 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~----~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~i~--~~~~~~~~q~i~~SAT~~ 83 (178)
.-+.+..++..||+.-..-.. ++..+-.-+.++|+||||+.-+|| +|++++..+- ++ .-+....++++||.+
T Consensus 109 ~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS-~~~~vpwvALTATA~ 187 (641)
T KOG0352|consen 109 KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS-VCPGVPWVALTATAN 187 (641)
T ss_pred hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh-hCCCCceEEeecccC
Confidence 334566799999998654332 233346778999999999999998 8999999873 33 336788999999999
Q ss_pred HHHHHHHHHh--ccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhc-------------CCCCEEEEeCCc
Q 030396 84 DFVEELARSI--MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES-------------LNPPVLIFVQSK 148 (178)
Q Consensus 84 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-------------~~~~~lIF~~t~ 148 (178)
+.+.+.+-.. ++.|+.+.-. +.-..++-.-+.+-..-.+-+..|.++-... ..+-.||||.|+
T Consensus 188 ~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR 265 (641)
T KOG0352|consen 188 AKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTR 265 (641)
T ss_pred hhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccH
Confidence 9988765554 4577555432 2333333211111111123344444443211 133589999999
Q ss_pred hHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 149 DRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..|+.++-.|...|+++.++|+|+...||
T Consensus 266 ~~cEq~AI~l~~~Gi~A~AYHAGLK~~ER 294 (641)
T KOG0352|consen 266 NECEQVAIMLEIAGIPAMAYHAGLKKKER 294 (641)
T ss_pred HHHHHHHHHhhhcCcchHHHhcccccchh
Confidence 99999999999999999999999998887
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.42 E-value=3.9e-12 Score=107.36 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=50.2
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
....|...+.+.+.. ...+|+||||+|++.++.++..|.+.|+++..+||++.+++|
T Consensus 405 ~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~ 463 (762)
T TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEA 463 (762)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHH
Confidence 445688888888865 457899999999999999999999999999999999998775
No 77
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.38 E-value=5.9e-12 Score=97.57 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=122.8
Q ss_pred CCCcEEEeCcHHHHHH---HH--cCCCCCCCeeEEEEeccccccccC-CChhhHHH--HHhhCCCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRLA---IR--RKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDP--VVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~---l~--~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~--i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.....+..||+.+... +. .+.+....++.+-+||+|+-.+|| +|++++.. |++. .-++..++.++||.+..
T Consensus 185 se~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr-qf~~~~iigltatatn~ 263 (695)
T KOG0353|consen 185 SEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR-QFKGAPIIGLTATATNH 263 (695)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH-hCCCCceeeeehhhhcc
Confidence 3577999999998842 32 256778899999999999999998 89998876 5666 55788899999999988
Q ss_pred HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC-hhhHHHHHHHHHH-hcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 86 VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS-EEGKLLALRQSFA-ESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~-~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
+.......+.-...+. ...+...+++...+..-+. .++=.+-+..+++ .+..+..||||-++++|+.++..|+.+|+
T Consensus 264 vl~d~k~il~ie~~~t-f~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi 342 (695)
T KOG0353|consen 264 VLDDAKDILCIEAAFT-FRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI 342 (695)
T ss_pred hhhHHHHHHhHHhhhe-eecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc
Confidence 7776666554222221 2345566677666654333 3334555555665 45577899999999999999999999999
Q ss_pred ceEeeecCCCcccc
Q 030396 164 RAGVIHSDLSQTQV 177 (178)
Q Consensus 164 ~~~~lh~~~~~~~R 177 (178)
.+..+|++|.+++|
T Consensus 343 ~a~~yha~lep~dk 356 (695)
T KOG0353|consen 343 HAGAYHANLEPEDK 356 (695)
T ss_pred cccccccccCcccc
Confidence 99999999999887
No 78
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.34 E-value=1e-11 Score=102.92 Aligned_cols=148 Identities=17% Similarity=0.204 Sum_probs=110.9
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH--HHH
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF--VEE 88 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~--~~~ 88 (178)
.++..+.++|.|.+-|.+++.+|+--++.+.|+||||+|.|-+.. .+-.|++-+-. +|.+.+.+++|||+|+. ..+
T Consensus 207 TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE-RGVVWEETIIl-lP~~vr~VFLSATiPNA~qFAe 284 (1041)
T KOG0948|consen 207 TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE-RGVVWEETIIL-LPDNVRFVFLSATIPNARQFAE 284 (1041)
T ss_pred eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc-cceeeeeeEEe-ccccceEEEEeccCCCHHHHHH
Confidence 356788999999999999999999889999999999999998776 67778777777 88999999999999975 345
Q ss_pred HHHHhccCcEEEEEcCCccccCCceEEEEEcCC---------h-----hhH-----------------------------
Q 030396 89 LARSIMHDAVRVIVGRKNTASESIKQKLVFAGS---------E-----EGK----------------------------- 125 (178)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~---------~-----~~k----------------------------- 125 (178)
|+......|..|....-..+| +-| |++... . ++.
T Consensus 285 WI~~ihkQPcHVVYTdyRPTP--LQH-yifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~ 361 (1041)
T KOG0948|consen 285 WICHIHKQPCHVVYTDYRPTP--LQH-YIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGT 361 (1041)
T ss_pred HHHHHhcCCceEEeecCCCCc--cee-eeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCc
Confidence 777777788777765433333 223 322211 1 111
Q ss_pred ---------HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 126 ---------LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 126 ---------~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
+..+..++-.....|+|||+-++++|+.+|-.|.+..+
T Consensus 362 ~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldf 408 (1041)
T KOG0948|consen 362 GGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDF 408 (1041)
T ss_pred CCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcC
Confidence 23444444444567999999999999999999987654
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=1.5e-10 Score=98.54 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+..+|...+.+.+.. ...+|+||||+|++.++.++..|.+.|+++..+||++.+++|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~ 467 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEA 467 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHH
Confidence 445788989888875 357899999999999999999999999999999999887765
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.26 E-value=2.2e-11 Score=105.40 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=111.2
Q ss_pred CCcEEEeCcHHHHHHHHcCCCC---CCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEEEEeecCcHH
Q 030396 15 SCDILISTPLRLRLAIRRKKID---LSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRSLFSATLPDF 85 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~---~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i~~SAT~~~~ 85 (178)
+-+|+||||+. ++.+.++..| .+-++.+|+||+|.+.++. ++.++.|.... -....+.+.+|||+|+-
T Consensus 411 eTqVIV~TPEK-~DiITRk~gdraY~qlvrLlIIDEIHLLhDdR--GpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy 487 (1674)
T KOG0951|consen 411 ETQVIVTTPEK-WDIITRKSGDRAYEQLVRLLIIDEIHLLHDDR--GPVLESIVARTFRRSESTEEGSRLVGLSATLPNY 487 (1674)
T ss_pred cceeEEeccch-hhhhhcccCchhHHHHHHHHhhhhhhhccccc--chHHHHHHHHHHHHhhhcccCceeeeecccCCch
Confidence 56899999998 6677665444 4566888999999997754 67777765552 12357899999999974
Q ss_pred HHHHHHHhcc-CcEEEEEcCCccccCCceEEEEEcCChh--hHHH-----HHHHHHHhcCCCCEEEEeCCchHHHHHHHH
Q 030396 86 VEELARSIMH-DAVRVIVGRKNTASESIKQKLVFAGSEE--GKLL-----ALRQSFAESLNPPVLIFVQSKDRAKELYGE 157 (178)
Q Consensus 86 ~~~~~~~~~~-~~~~v~~~~~~~~~~~i~~~~~~~~~~~--~k~~-----~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~ 157 (178)
.+ ...|++ +|.-+.....+..|--+.|+|+.+...+ .++. .....++-....|+|||+.+++++-++|..
T Consensus 488 -~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~a 565 (1674)
T KOG0951|consen 488 -ED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARA 565 (1674)
T ss_pred -hh-hHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHH
Confidence 22 233333 4444445555667777899998776543 2222 233344555579999999999999998887
Q ss_pred hhh-------------------------------------CCCceEeeecCCCcccc
Q 030396 158 LAF-------------------------------------DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 158 L~~-------------------------------------~g~~~~~lh~~~~~~~R 177 (178)
++. ..+-.+..|+||+..+|
T Consensus 566 IRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR 622 (1674)
T KOG0951|consen 566 IRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDR 622 (1674)
T ss_pred HHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchH
Confidence 762 13678899999999887
No 81
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.20 E-value=6e-10 Score=96.46 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=106.5
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHH--H
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVE--E 88 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~--~ 88 (178)
.+++++.|+|.|-+-|.+++.++...+..+.++||||+|.+-+.. -+..++.++-+ ++...|++++|||+|+..+ .
T Consensus 201 ~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~e-RG~VWEE~Ii~-lP~~v~~v~LSATv~N~~EF~~ 278 (1041)
T COG4581 201 SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRE-RGVVWEEVIIL-LPDHVRFVFLSATVPNAEEFAE 278 (1041)
T ss_pred eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccc-cchhHHHHHHh-cCCCCcEEEEeCCCCCHHHHHH
Confidence 566789999999999999999999999999999999999998877 88999999999 8889999999999997633 3
Q ss_pred HHHHhccCcEEEEEcCCccccCCceEEEEEcCC-------hhhH------------------------------------
Q 030396 89 LARSIMHDAVRVIVGRKNTASESIKQKLVFAGS-------EEGK------------------------------------ 125 (178)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~-------~~~k------------------------------------ 125 (178)
++...-..|..+........| +.|++ .+.. .+.+
T Consensus 279 Wi~~~~~~~~~vv~t~~RpvP--L~~~~-~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~ 355 (1041)
T COG4581 279 WIQRVHSQPIHVVSTEHRPVP--LEHFV-YVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTK 355 (1041)
T ss_pred HHHhccCCCeEEEeecCCCCC--eEEEE-ecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccccccccc
Confidence 444444456666554433332 33333 2221 0000
Q ss_pred -----------HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 126 -----------LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 126 -----------~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
...+...+.....-|+|+|+-+++.|+..+..+...
T Consensus 356 ~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~l 402 (1041)
T COG4581 356 ALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTL 402 (1041)
T ss_pred ccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccc
Confidence 011233333444669999999999999999998643
No 82
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=5.8e-10 Score=95.10 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
...+|...+.+.+.. ...+|+||||+|+..++.++..|.+.|++...+||.
T Consensus 411 t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 411 TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 455788999998865 557899999999999999999999999999999996
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.16 E-value=4.8e-10 Score=94.54 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=43.1
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
+..+|...+.+.+.. ...+|+||||+|+..++.++..|.+.|++...+||.
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 345677777776632 357899999999999999999999999999999998
No 84
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=4.5e-10 Score=95.41 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=67.6
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
++...+.++|.|-+-|.+++.++.--.+++.++||||+|.+-+.. .+-.+++++-+ +|...++|++|||.|+..
T Consensus 375 qinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~e-RGvVWEEViIM-lP~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 375 QINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVE-RGVVWEEVIIM-LPRHVNFILLSATVPNTL 448 (1248)
T ss_pred eeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccc-ccccceeeeee-ccccceEEEEeccCCChH
Confidence 566788999999999999999998888999999999999997776 88899999999 899999999999999763
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=3e-10 Score=97.15 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 123 EGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 123 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..|...+.+-+.. ...+|+||||+|++.++.++..|.+.|++...+||.+.+.+|
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea 483 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEA 483 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHH
Confidence 4577777666643 347899999999999999999999999999999999998876
No 86
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.4e-09 Score=85.67 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=57.0
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...+|+|+||+.+.+-+..|.+|+.++.++||||||+-..+-.+.......+++ ..+..++.+|||-..
T Consensus 106 ~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~--~k~~~ilgLTASPGs 174 (542)
T COG1111 106 AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS--AKNPLILGLTASPGS 174 (542)
T ss_pred hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh--ccCceEEEEecCCCC
Confidence 456899999999999999999999999999999999987665355555555554 467789999999764
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.5e-08 Score=83.55 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=43.7
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC--CC---hhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG--NL---LKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~--~~---~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.+.++|||||+..+. ..+++++++|+||.|...-.+ .. ..++..... ...+.+++++|||-+.+
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra--~~~~~~vil~SATPsle 142 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA--KKFNCPVVLGSATPSLE 142 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH--HhcCCCEEEEeCCCCHH
Confidence 456899999998763 357789999999999875433 11 122222333 33678999999996544
No 88
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.06 E-value=2.1e-09 Score=77.00 Aligned_cols=92 Identities=30% Similarity=0.435 Sum_probs=78.0
Q ss_pred hccCCC-cEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 11 LSKFSC-DILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 11 ~l~~~~-~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
.+..+. +++++||+++.+.+........+++++|+||+|.+.... +...+..+++. .+...+++++|||.++.....
T Consensus 100 ~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~-~~~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 100 KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGG-FGDQLEKLLKL-LPKNVQLLLLSATPPEEIENL 177 (201)
T ss_pred HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCC-cHHHHHHHHHh-CCccceEEEEecCCchhHHHH
Confidence 344455 999999999999998877788899999999999998755 78999999998 677899999999999999999
Q ss_pred HHHhccCcEEEEEcC
Q 030396 90 ARSIMHDAVRVIVGR 104 (178)
Q Consensus 90 ~~~~~~~~~~v~~~~ 104 (178)
...++.+...+....
T Consensus 178 ~~~~~~~~~~~~~~~ 192 (201)
T smart00487 178 LELFLNDPVFIDVGP 192 (201)
T ss_pred HHHhcCCCEEEeCCc
Confidence 999888766665543
No 89
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.06 E-value=2.9e-09 Score=92.79 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHh-hhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGEL-AFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L-~~~g~~~~~lh~~~~~~~R 177 (178)
.|...|.++++.....|+||||+++..+..+++.| ...|+++..+||+|++.+|
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR 533 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIER 533 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHH
Confidence 57788999998887889999999999999999999 5679999999999999887
No 90
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.06 E-value=5.9e-10 Score=95.52 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=100.6
Q ss_pred CcEEEeCcHHHHHHHH-cCCCC---CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 16 CDILISTPLRLRLAIR-RKKID---LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~-~~~~~---~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
..+.++||-.+..... ..... .=..+.+||||+|.+-... ....+..++..+......++++|||+|+..++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~ 389 (733)
T COG1203 311 LALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLK 389 (733)
T ss_pred ccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHH
Confidence 4566677766555221 11112 1233688999999998874 46666666665344678899999999999998888
Q ss_pred HhccCcEEEEEcCCc---cccCCceEEEEEcCChhhH--HHHHHHHHH-hcCCCCEEEEeCCchHHHHHHHHhhhCCCce
Q 030396 92 SIMHDAVRVIVGRKN---TASESIKQKLVFAGSEEGK--LLALRQSFA-ESLNPPVLIFVQSKDRAKELYGELAFDDIRA 165 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~---~~~~~i~~~~~~~~~~~~k--~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~ 165 (178)
..+.....+...... ..-..+.+.. .. +..+. ......... .....+++|-|||+..|..++..|+..+.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v 467 (733)
T COG1203 390 KALGKGREVVENAKFCPKEDEPGLKRKE-RV-DVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKV 467 (733)
T ss_pred HHHhcccceecccccccccccccccccc-ch-hhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCE
Confidence 877765444332110 0011111111 00 11111 011111122 2336799999999999999999999999899
Q ss_pred EeeecCCCcccc
Q 030396 166 GVIHSDLSQTQV 177 (178)
Q Consensus 166 ~~lh~~~~~~~R 177 (178)
..+||.+...+|
T Consensus 468 ~LlHSRf~~~dR 479 (733)
T COG1203 468 LLLHSRFTLKDR 479 (733)
T ss_pred EEEecccchhhH
Confidence 999999999887
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.95 E-value=6.8e-08 Score=82.33 Aligned_cols=70 Identities=17% Similarity=0.061 Sum_probs=47.3
Q ss_pred ccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC--CChhhHHHH--HhhCCCCCceEEEEeecCcHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG--NLLKHIDPV--VKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~--~~~~~i~~i--~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
..+.++||||||+.+. ..++++.++|+||+|...-.+ ...-+.+.+ .+. ...+.|++++|||.+.+..
T Consensus 238 ~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra-~~~~~~~il~SATps~~s~ 309 (679)
T PRK05580 238 KRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA-KLENIPVVLGSATPSLESL 309 (679)
T ss_pred HcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh-hccCCCEEEEcCCCCHHHH
Confidence 3456899999998764 457889999999999864332 111122332 223 4468999999999775544
Q ss_pred HH
Q 030396 88 EL 89 (178)
Q Consensus 88 ~~ 89 (178)
..
T Consensus 310 ~~ 311 (679)
T PRK05580 310 AN 311 (679)
T ss_pred HH
Confidence 43
No 92
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.2e-08 Score=87.56 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc-cccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l-l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
..-.|-+.|.|.|+..+.... .++..+++|+||+|.= ++..-..-.+..++.. .+....++++|||+.. +.+..
T Consensus 138 ~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~-rr~DLKiIimSATld~---~rfs~ 212 (845)
T COG1643 138 PRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLAR-RRDDLKLIIMSATLDA---ERFSA 212 (845)
T ss_pred CCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhh-cCCCceEEEEecccCH---HHHHH
Confidence 455799999999999988654 3789999999999984 3332123445555665 6667899999999994 44556
Q ss_pred hccCcEEEEEcCCccccCCceEEEEEcCChh----hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh----CCCc
Q 030396 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEE----GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF----DDIR 164 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~----~g~~ 164 (178)
+++++..+.++...... .-+|....... ..+....+.......+.++||.+-.++.+.+++.|.+ ....
T Consensus 213 ~f~~apvi~i~GR~fPV---ei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~ 289 (845)
T COG1643 213 YFGNAPVIEIEGRTYPV---EIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLE 289 (845)
T ss_pred HcCCCCEEEecCCccce---EEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcE
Confidence 66766566655433222 22231221111 2233333333344588999999999999999999987 4589
Q ss_pred eEeeecCCCccc
Q 030396 165 AGVIHSDLSQTQ 176 (178)
Q Consensus 165 ~~~lh~~~~~~~ 176 (178)
+..+||.|+.++
T Consensus 290 i~PLy~~L~~~e 301 (845)
T COG1643 290 ILPLYGALSAEE 301 (845)
T ss_pred EeeccccCCHHH
Confidence 999999998764
No 93
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.83 E-value=3.5e-07 Score=73.53 Aligned_cols=160 Identities=22% Similarity=0.255 Sum_probs=113.6
Q ss_pred CCcEEEeCcHHHHHHHHc-----CCCC-CCCeeEEEEeccccccccCCChhhHHHHHhhC--CCC---------------
Q 030396 15 SCDILISTPLRLRLAIRR-----KKID-LSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNP--------------- 71 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~-----~~~~-~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~--------------- 71 (178)
++||||++|=-|...+.. +..| ++++..+|+|.||.++-.. -+.+..+++.+ .|.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN--W~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN--WEHVLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh--HHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 689999999888888874 2223 8999999999999987544 45555555553 222
Q ss_pred ------CceEEEEeecCcHHHHHHHHHhccCc-EEEEEcC--C-----ccccCCceEEEEEcCCh------hhHHHHHHH
Q 030396 72 ------SIVRSLFSATLPDFVEELARSIMHDA-VRVIVGR--K-----NTASESIKQKLVFAGSE------EGKLLALRQ 131 (178)
Q Consensus 72 ------~~q~i~~SAT~~~~~~~~~~~~~~~~-~~v~~~~--~-----~~~~~~i~~~~~~~~~~------~~k~~~l~~ 131 (178)
-+|++++|+...+++..+....+.|. ..+.+.. . ......+.|.|...+.. ..++.....
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 17999999999999999999966653 3333322 2 23445677877654332 234444433
Q ss_pred ----HHH-hcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCccc
Q 030396 132 ----SFA-ESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 132 ----ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~ 176 (178)
-+. ....+.+|||++|=-+=-.+-.+|.+.++..+.+|...++.+
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~ 338 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSD 338 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHH
Confidence 222 445678999999999999999999999999999888766543
No 94
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=1.7e-08 Score=85.54 Aligned_cols=149 Identities=13% Similarity=0.004 Sum_probs=87.6
Q ss_pred CcEEEeCcHHHHHHHHcC--------CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH--
Q 030396 16 CDILISTPLRLRLAIRRK--------KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF-- 85 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~~--------~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~-- 85 (178)
..|+|+|...+.....+. .+.-....++|+||+|.+-. +.+..++.. +. ....+.+|||....
T Consensus 344 ~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-----~~fr~il~~-l~-a~~RLGLTATP~ReD~ 416 (732)
T TIGR00603 344 AGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-----AMFRRVLTI-VQ-AHCKLGLTATLVREDD 416 (732)
T ss_pred CcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-----HHHHHHHHh-cC-cCcEEEEeecCcccCC
Confidence 679999998765332211 12224567999999999943 446667766 33 44569999998632
Q ss_pred HHHHHHHhccCcEEEEEcCC-----c-cccCCceEEEEEc--------------------CChhhHHHHHHHHHHhc--C
Q 030396 86 VEELARSIMHDAVRVIVGRK-----N-TASESIKQKLVFA--------------------GSEEGKLLALRQSFAES--L 137 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~-----~-~~~~~i~~~~~~~--------------------~~~~~k~~~l~~ll~~~--~ 137 (178)
-...+..+ -.|......-. + ..+.......+.. .....|+..+..+++.+ .
T Consensus 417 ~~~~L~~L-iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~ 495 (732)
T TIGR00603 417 KITDLNFL-IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQR 495 (732)
T ss_pred chhhhhhh-cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhc
Confidence 11112111 22332222111 1 0110000001010 11234667777777654 5
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..++||||++...++.++..|. +..+||++++.+|
T Consensus 496 g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER 530 (732)
T TIGR00603 496 GDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQER 530 (732)
T ss_pred CCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHH
Confidence 7899999999999999999883 4569999999988
No 95
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=2.4e-08 Score=83.75 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=77.2
Q ss_pred EEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcC--CCCEEEEeCCchHHH
Q 030396 75 RSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL--NPPVLIFVQSKDRAK 152 (178)
Q Consensus 75 ~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~ 152 (178)
...||||.+....++.+.|.-++..+-... .......+.++++ +..+|...+.+.++... .+++||||+|++.++
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~k--p~~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNR--PSQRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCC--CccceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 558999999887788887877865554332 2333344445455 56679999999997643 578999999999999
Q ss_pred HHHHHhhhCCCceEeeecCCCcccc
Q 030396 153 ELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 153 ~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.++..|.+.|+++..+||++.+++|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~rE~ 512 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDAEEA 512 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHHHHH
Confidence 9999999999999999999876654
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=6.4e-08 Score=83.10 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 123 EGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 123 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..|...+.+-+.. ...+|+||||+|++.++.++..|...|++...+|+.+.+.+|
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea 488 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREA 488 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHH
Confidence 3566666665553 247899999999999999999999999999999999988775
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.74 E-value=9e-08 Score=81.75 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCcEEEeCcHHHHHHH----HcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC----CCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRLAI----RRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC----SNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l----~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~----~~~~~q~i~~SAT~~~~ 85 (178)
+.-++-|+|-++-+.++ +.+ .+..+.++|+||.|.+.+.+ ....++.++..+ .....|+|.+|||+|+-
T Consensus 314 k~~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElhmi~d~~-rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 314 KRESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELHMIGDKG-RGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred cceeeeeeehHhhHhHHHHHHhcC--CccccCcEEEeeeeeeeccc-cchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 45679999999855444 445 45678899999999999988 666676666554 33457899999999963
Q ss_pred HHHHHHHhcc
Q 030396 86 VEELARSIMH 95 (178)
Q Consensus 86 ~~~~~~~~~~ 95 (178)
.++..|++
T Consensus 391 --~lL~~~L~ 398 (1008)
T KOG0950|consen 391 --SLLQDWLD 398 (1008)
T ss_pred --HHHHHHhh
Confidence 44444544
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.66 E-value=2.3e-07 Score=75.50 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=89.4
Q ss_pred CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH---HHHHHH
Q 030396 16 CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV---EELARS 92 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~---~~~~~~ 92 (178)
..|.|+|=..+...-...........++|+||+|++.... ...+.+.+ ....-.+.+|||.+..- ...+..
T Consensus 123 ~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~-----~~~~~~~~-~~~~~~LGLTATp~R~D~~~~~~l~~ 196 (442)
T COG1061 123 AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS-----YRRILELL-SAAYPRLGLTATPEREDGGRIGDLFD 196 (442)
T ss_pred CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH-----HHHHHHhh-hcccceeeeccCceeecCCchhHHHH
Confidence 3699999988776421122223367899999999997766 44444442 21111899999976211 011111
Q ss_pred hccCcEEEEEcCCcccc----CCceEEEEEc-------------------------------------CChhhHHHHHHH
Q 030396 93 IMHDAVRVIVGRKNTAS----ESIKQKLVFA-------------------------------------GSEEGKLLALRQ 131 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~----~~i~~~~~~~-------------------------------------~~~~~k~~~l~~ 131 (178)
.+ .|............ .......+.+ .....+...+..
T Consensus 197 ~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (442)
T COG1061 197 LI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRG 275 (442)
T ss_pred hc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHH
Confidence 11 12222221110000 0000000011 011234455555
Q ss_pred HHHhc-CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 132 SFAES-LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 132 ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
++..+ ...+++|||.+..+++.++..|...|+ +..+.|+.++.+|
T Consensus 276 ~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR 321 (442)
T COG1061 276 LLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEER 321 (442)
T ss_pred HHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHH
Confidence 55544 367999999999999999999999988 9999999999887
No 99
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.65 E-value=5.5e-07 Score=74.52 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=96.2
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc-cccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l-l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
.-.|.+.|-|.|+.-+.... .++.-+.+|+||||.= +..+-..-.+..|++. +....++++|||+.. +....|
T Consensus 140 ~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~--R~~LklIimSATlda---~kfS~y 213 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK--RPDLKLIIMSATLDA---EKFSEY 213 (674)
T ss_pred ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc--CCCceEEEEeeeecH---HHHHHH
Confidence 44699999999997665443 4677799999999984 1111133344445543 356789999999993 445566
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChhhH----HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC----C--C
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGK----LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD----D--I 163 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~----g--~ 163 (178)
+.+...+.++..... +..+|.. .+..+- .....++-...+.+-++||....++.+.+++.|.+. + .
T Consensus 214 F~~a~i~~i~GR~fP---Vei~y~~-~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~ 289 (674)
T KOG0922|consen 214 FNNAPILTIPGRTFP---VEILYLK-EPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDC 289 (674)
T ss_pred hcCCceEeecCCCCc---eeEEecc-CCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccC
Confidence 666445555432222 2223322 122221 222233333456778999999999999999999764 1 1
Q ss_pred --ceEeeecCCCccc
Q 030396 164 --RAGVIHSDLSQTQ 176 (178)
Q Consensus 164 --~~~~lh~~~~~~~ 176 (178)
-+..+||.|+.++
T Consensus 290 ~~~~lply~aL~~e~ 304 (674)
T KOG0922|consen 290 PELILPLYGALPSEE 304 (674)
T ss_pred cceeeeecccCCHHH
Confidence 2578999998765
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.1e-06 Score=65.39 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=91.2
Q ss_pred CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhcc
Q 030396 16 CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMH 95 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 95 (178)
..++|+|--.|+..-. -.+++|+||+|.+--.. -+.+..-.+.-...+.-++.+|||-+...+.-+.. .
T Consensus 186 ~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~--d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~--g 254 (441)
T COG4098 186 APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD--DQSLQYAVKKARKKEGATIYLTATPTKKLERKILK--G 254 (441)
T ss_pred ccEEEEehHHHHHHHh-------hccEEEEeccccccccC--CHHHHHHHHHhhcccCceEEEecCChHHHHHHhhh--C
Confidence 5678888866554432 34589999999984322 23333333332456777899999999765553332 2
Q ss_pred CcEEEEEcCCccccCCceEEEEEcCChhhHHH------HHHHHHHhc--CCCCEEEEeCCchHHHHHHHHh-hhCCC-ce
Q 030396 96 DAVRVIVGRKNTASESIKQKLVFAGSEEGKLL------ALRQSFAES--LNPPVLIFVQSKDRAKELYGEL-AFDDI-RA 165 (178)
Q Consensus 96 ~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~------~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L-~~~g~-~~ 165 (178)
+-..+.++..-...+-..-.++...+-.+++. .|...+++. ...|++||+++++..+.+++.| ...+. .+
T Consensus 255 ~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i 334 (441)
T COG4098 255 NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETI 334 (441)
T ss_pred CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccce
Confidence 33344444433333333334556656555542 455666543 3579999999999999999999 44454 55
Q ss_pred EeeecCC
Q 030396 166 GVIHSDL 172 (178)
Q Consensus 166 ~~lh~~~ 172 (178)
+..|+.-
T Consensus 335 ~~Vhs~d 341 (441)
T COG4098 335 ASVHSED 341 (441)
T ss_pred eeeeccC
Confidence 7888763
No 101
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.48 E-value=8.1e-07 Score=59.87 Aligned_cols=68 Identities=29% Similarity=0.314 Sum_probs=51.4
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
..+++|+++|++.+..............+++|+||+|.+.... ........... .....+++++|||.
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~-~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLK-LPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhh-CCccceEEEEeccC
Confidence 4679999999999998887765556778899999999997765 33332222333 45778899999994
No 102
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.43 E-value=2.3e-06 Score=74.02 Aligned_cols=145 Identities=22% Similarity=0.237 Sum_probs=99.1
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC-------------------CC---
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC-------------------SN--- 70 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~-------------------~~--- 70 (178)
+++.||+|+|.+-|..-...= .--+.+++.+|.+|.++..+ ..+.+++..+ +.
T Consensus 179 ~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lkas---kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~ 253 (1187)
T COG1110 179 SGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKAS---KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEK 253 (1187)
T ss_pred cCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhcc---ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 357999999997766555421 11356799999999998765 2222222221 00
Q ss_pred ---------------------CCceEEEEeecCcHHH--HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHH
Q 030396 71 ---------------------PSIVRSLFSATLPDFV--EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLL 127 (178)
Q Consensus 71 ---------------------~~~q~i~~SAT~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~ 127 (178)
...+.++.|||..+.- ..+.+..++ ..++.......||..-++.. .-..
T Consensus 254 ~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~~LRNIvD~y~~~----~~~e 325 (1187)
T COG1110 254 RAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGEGLRNIVDIYVES----ESLE 325 (1187)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccchhhhheeeeeccC----ccHH
Confidence 1257889999998652 234444444 24455566677777777544 3445
Q ss_pred HHHHHHHhcCCCCEEEEeCC---chHHHHHHHHhhhCCCceEeeecC
Q 030396 128 ALRQSFAESLNPPVLIFVQS---KDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 128 ~l~~ll~~~~~~~~lIF~~t---~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
...+++++. ..=.|||+++ ++-|+.++++|..+|+++..+|++
T Consensus 326 ~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 326 KVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred HHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 566677776 3469999999 999999999999999999999986
No 103
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.41 E-value=6.1e-06 Score=71.50 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=102.0
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
.-.++++|-|-|++.+.. .-.+..+..+|+||+|.=--+.+|.-.+.+-+-. .++..++|++|||+. .+....|+
T Consensus 264 ~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~-~~p~LkvILMSAT~d---ae~fs~YF 338 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP-RNPDLKVILMSATLD---AELFSDYF 338 (924)
T ss_pred ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhh-hCCCceEEEeeeecc---hHHHHHHh
Confidence 467999999999999887 4568899999999999964444355555444444 568999999999999 45556666
Q ss_pred cCcEEEEEcCCccc----------------cCCceEEEEEcC-----------ChhhHHHHHHHHHH----hcCCCCEEE
Q 030396 95 HDAVRVIVGRKNTA----------------SESIKQKLVFAG-----------SEEGKLLALRQSFA----ESLNPPVLI 143 (178)
Q Consensus 95 ~~~~~v~~~~~~~~----------------~~~i~~~~~~~~-----------~~~~k~~~l~~ll~----~~~~~~~lI 143 (178)
++...+.+...... ...-.+...... ..+-..+.+.+++. ....+.+||
T Consensus 339 ~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILV 418 (924)
T KOG0920|consen 339 GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILV 418 (924)
T ss_pred CCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEE
Confidence 66555555322110 000011100000 11123344444443 333778999
Q ss_pred EeCCchHHHHHHHHhhhC-------CCceEeeecCCCc
Q 030396 144 FVQSKDRAKELYGELAFD-------DIRAGVIHSDLSQ 174 (178)
Q Consensus 144 F~~t~~~~~~l~~~L~~~-------g~~~~~lh~~~~~ 174 (178)
|.+...+...+...|... .+-+..+||.|+.
T Consensus 419 FLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s 456 (924)
T KOG0920|consen 419 FLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPS 456 (924)
T ss_pred EcCCHHHHHHHHHHhhhccccccccceEEEeccccCCh
Confidence 999999999999999642 3578899999987
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.38 E-value=9.7e-06 Score=72.52 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCCcEEEeCcHHHHHHHHcC-----CCCCCCeeEEEEeccccccc------cC--------CChhhHHHHHhhCCCCCce
Q 030396 14 FSCDILISTPLRLRLAIRRK-----KIDLSRVEYLVLDEADKLFE------VG--------NLLKHIDPVVKACSNPSIV 74 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~-----~~~~~~l~~lViDE~d~ll~------~~--------~~~~~i~~i~~~~~~~~~q 74 (178)
....|+|+|..++...+... ...+...+++|+||||+-.. .+ .+...++.++.++ +.-
T Consensus 510 ~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF---dA~ 586 (1123)
T PRK11448 510 DETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF---DAV 586 (1123)
T ss_pred CCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc---Ccc
Confidence 35789999999987765321 23567888999999999631 11 1246788888873 356
Q ss_pred EEEEeecCc
Q 030396 75 RSLFSATLP 83 (178)
Q Consensus 75 ~i~~SAT~~ 83 (178)
.+.||||-.
T Consensus 587 ~IGLTATP~ 595 (1123)
T PRK11448 587 KIGLTATPA 595 (1123)
T ss_pred EEEEecCCc
Confidence 799999975
No 105
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.36 E-value=2.1e-05 Score=65.85 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=91.5
Q ss_pred hccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCC-CceEEEEeecCcHHHHH
Q 030396 11 LSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNP-SIVRSLFSATLPDFVEE 88 (178)
Q Consensus 11 ~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~-~~q~i~~SAT~~~~~~~ 88 (178)
.+.+ ..+|||||.. +-+...+++++.++|+||=|++--.+ +..++. ... ..-.+++|||-=|. .
T Consensus 360 ~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHRFGV~Q------R~~L~~-KG~~~Ph~LvMTATPIPR--T 425 (677)
T COG1200 360 QLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHRFGVHQ------RLALRE-KGEQNPHVLVMTATPIPR--T 425 (677)
T ss_pred HHhCCCCCEEEEcch-----hhhcceeecceeEEEEeccccccHHH------HHHHHH-hCCCCCcEEEEeCCCchH--H
Confidence 4444 4999999984 44556779999999999999984333 333443 444 57789999996543 3
Q ss_pred HHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCch--------HHHHHHHHhhh
Q 030396 89 LARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKD--------RAKELYGELAF 160 (178)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~--------~~~~l~~~L~~ 160 (178)
++-..+.|-..-.++.-+.-+..|.-..+......+-.+.+..-+. ...|+-+-|+-++ .|+.+++.|+.
T Consensus 426 LAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~ 503 (677)
T COG1200 426 LALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKS 503 (677)
T ss_pred HHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHH
Confidence 3334444422222222222223344445444333333444433333 4588999996554 45567777764
Q ss_pred C--CCceEeeecCCCccc
Q 030396 161 D--DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 161 ~--g~~~~~lh~~~~~~~ 176 (178)
. ++++..+||.|+..|
T Consensus 504 ~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 504 FLPELKVGLVHGRMKPAE 521 (677)
T ss_pred HcccceeEEEecCCChHH
Confidence 3 568999999999765
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.33 E-value=1.3e-05 Score=70.59 Aligned_cols=145 Identities=15% Similarity=0.104 Sum_probs=98.2
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
+..||||||.- +-++.+.++++..+|+||=|++--.. . +-++. +..+.-++-+|||-=|.-....-.-
T Consensus 696 G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqRFGVk~--K----EkLK~-Lr~~VDvLTLSATPIPRTL~Msm~G 763 (1139)
T COG1197 696 GKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQRFGVKH--K----EKLKE-LRANVDVLTLSATPIPRTLNMSLSG 763 (1139)
T ss_pred CCccEEEechH-----hhCCCcEEecCCeEEEechhhcCccH--H----HHHHH-HhccCcEEEeeCCCCcchHHHHHhc
Confidence 56999999983 23466789999999999999984333 3 33444 6678889999999655544444445
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChh-hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC--CCceEeeec
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEE-GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD--DIRAGVIHS 170 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~--g~~~~~lh~ 170 (178)
.++-..+..++.+..+ +.=++ ...+.. -+-+.+.++ ...+|+-.-+|.+++.+.++..|++. ..+++.-||
T Consensus 764 iRdlSvI~TPP~~R~p--V~T~V-~~~d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHG 837 (1139)
T COG1197 764 IRDLSVIATPPEDRLP--VKTFV-SEYDDLLIREAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHG 837 (1139)
T ss_pred chhhhhccCCCCCCcc--eEEEE-ecCChHHHHHHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeec
Confidence 5565566555544433 33333 322222 222222222 23588888899999999999999887 568999999
Q ss_pred CCCccc
Q 030396 171 DLSQTQ 176 (178)
Q Consensus 171 ~~~~~~ 176 (178)
.|+.++
T Consensus 838 QM~e~e 843 (1139)
T COG1197 838 QMRERE 843 (1139)
T ss_pred CCCHHH
Confidence 998754
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.27 E-value=3.3e-06 Score=71.72 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 122 EEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 122 ~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
...++..+.+-++. ....+++|||+|++.|+.+++.|.+.|+++..+||++++.+|
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR 481 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLER 481 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHH
Confidence 34456666666653 346789999999999999999999999999999999998776
No 108
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.25 E-value=7.9e-07 Score=76.83 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 124 GKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 124 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
.|...+.+-+... ..+|+||-|.|....+.++..|.+.|++...+++.
T Consensus 552 ~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak 601 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAK 601 (970)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccc
Confidence 4666665555432 46789999999999999999999999988877764
No 109
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.21 E-value=4e-06 Score=70.85 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=59.2
Q ss_pred ccCCCcEEEeCcHHHHHHHHcCCCC-CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRKKID-LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~~~~-~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
+-...+|+|.||+-|.+.|..+..+ ++++.++||||||+-..+..+...++..+.. .....|++++|||......
T Consensus 151 i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~-k~~~~qILgLTASpG~~~~ 226 (746)
T KOG0354|consen 151 IVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL-KNQGNQILGLTASPGSKLE 226 (746)
T ss_pred hhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh-hhccccEEEEecCCCccHH
Confidence 3457899999999999999887665 5999999999999998776455555566665 4555699999999986433
No 110
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.20 E-value=2.1e-06 Score=64.38 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=42.8
Q ss_pred hHhHHhHHhccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccc
Q 030396 3 KELVRSTDLSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 3 ~~~~~q~~~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d 49 (178)
-++.+|...+++ ..+|.|||||||..+++.+.+.+++++++|+|--|
T Consensus 164 ~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 164 IKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred ccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCCc
Confidence 468899999985 79999999999999999999999999999999753
No 111
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.19 E-value=1.9e-05 Score=69.89 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|+..|..++... ...++|||+......+.+.++|...|++...++|+++..+|
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eR 526 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDR 526 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 5677777777643 36799999999999999999999999999999999998877
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.13 E-value=2.6e-05 Score=63.57 Aligned_cols=98 Identities=21% Similarity=0.156 Sum_probs=64.7
Q ss_pred CceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHH--hcCCCCEEEEeCCch
Q 030396 72 SIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA--ESLNPPVLIFVQSKD 149 (178)
Q Consensus 72 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~--~~~~~~~lIF~~t~~ 149 (178)
..|++++|||-.+.-.+. ..++-..-.+.+.+...+-+ .+.+....++-|++-++ ...+.+++|=+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~---s~~~vveQiIRPTGLlDP~i-----evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQ---SGGNVVEQIIRPTGLLDPEI-----EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHh---ccCceeEEeecCCCCCCCce-----eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 369999999988653332 22232333444444443332 22232333343443333 234689999999999
Q ss_pred HHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 150 RAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 150 ~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|+.|.++|.+.|+++..+||+...-+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER 485 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLER 485 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHH
Confidence 9999999999999999999999877665
No 113
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.13 E-value=1.6e-05 Score=53.26 Aligned_cols=54 Identities=37% Similarity=0.366 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhcC--CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAESL--NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|...+.+++.... .+++||||++...++.+++.|.+.+.++..+||+++..+|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 67 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEER 67 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHH
Confidence 68888888888664 7899999999999999999999999999999999987765
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.10 E-value=8.7e-06 Score=69.34 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.++..+.+.+.. ....+++|||+|++.|+.+++.|.+.|+++..+||++++.+|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R 485 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLER 485 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHH
Confidence 445566666653 236789999999999999999999999999999999998765
No 115
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.94 E-value=3.2e-05 Score=65.91 Aligned_cols=152 Identities=15% Similarity=0.150 Sum_probs=86.7
Q ss_pred CCcEEEeCcHHHHHHHHcC-----CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 15 SCDILISTPLRLRLAIRRK-----KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~-----~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
.++|.++|=.++...+.+. .+.....+++|+||||+=+ ......|+.++ ..-.| .++||....+..-
T Consensus 256 s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi-----~~~~~~I~dYF-dA~~~--gLTATP~~~~d~~ 327 (875)
T COG4096 256 SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI-----YSEWSSILDYF-DAATQ--GLTATPKETIDRS 327 (875)
T ss_pred ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-----HhhhHHHHHHH-HHHHH--hhccCcccccccc
Confidence 5799999999999888765 3446779999999999853 34455777773 32333 3377766533332
Q ss_pred HHHhc-cCc------------------EEEEE----cCCccccCCc-------------eEEEEEc----------CChh
Q 030396 90 ARSIM-HDA------------------VRVIV----GRKNTASESI-------------KQKLVFA----------GSEE 123 (178)
Q Consensus 90 ~~~~~-~~~------------------~~v~~----~~~~~~~~~i-------------~~~~~~~----------~~~~ 123 (178)
--.++ +.| ..+.+ ..++..+... ..+.... ....
T Consensus 328 T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~ 407 (875)
T COG4096 328 TYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTE 407 (875)
T ss_pred cccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHH
Confidence 22333 222 11111 1112222111 0011000 0111
Q ss_pred hHHHHHHHHHHh--cC--CCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCc
Q 030396 124 GKLLALRQSFAE--SL--NPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQ 174 (178)
Q Consensus 124 ~k~~~l~~ll~~--~~--~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~ 174 (178)
.-...+.+.++. .. .+||||||.+..+|+.+...|.+. |--+..+.|+-.+
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~ 467 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ 467 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh
Confidence 234555566665 33 679999999999999999999653 3345555555443
No 116
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.87 E-value=6.1e-05 Score=64.81 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 121 SEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+...|...+.+.+... ..+|+||||+|+..++.++..|.+.|++...+||++.++++
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea 479 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEA 479 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHH
Confidence 4567888888888643 57899999999999999999999999999999999887664
No 117
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.72 E-value=0.00074 Score=56.70 Aligned_cols=150 Identities=16% Similarity=0.150 Sum_probs=93.6
Q ss_pred cEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc-cccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhcc
Q 030396 17 DILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMH 95 (178)
Q Consensus 17 ~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l-l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 95 (178)
-+-+.|-|.|+.-+... .++.+-+.+|+||||.= +...=....+..|.+ ..+....++.|||+.. +-...|+.
T Consensus 357 vlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar--~RpdLKllIsSAT~DA---ekFS~fFD 430 (902)
T KOG0923|consen 357 VLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIAR--FRPDLKLLISSATMDA---EKFSAFFD 430 (902)
T ss_pred eeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHh--hCCcceEEeeccccCH---HHHHHhcc
Confidence 46678999888655433 46888899999999984 222213455666666 4578899999999984 34455666
Q ss_pred CcEEEEEcCCccccCCceEEEEEcCChhhHHH-HHHHHHH---hcCCCCEEEEeCCchHHHHHHHHhhhC---------C
Q 030396 96 DAVRVIVGRKNTASESIKQKLVFAGSEEGKLL-ALRQSFA---ESLNPPVLIFVQSKDRAKELYGELAFD---------D 162 (178)
Q Consensus 96 ~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~-~l~~ll~---~~~~~~~lIF~~t~~~~~~l~~~L~~~---------g 162 (178)
+.....++..... +.-+|-.. ++.+-+. .+.-+++ ..+.+-+|||..-....+...+.|.+. .
T Consensus 431 dapIF~iPGRRyP---Vdi~Yt~~-PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~e 506 (902)
T KOG0923|consen 431 DAPIFRIPGRRYP---VDIFYTKA-PEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRE 506 (902)
T ss_pred CCcEEeccCcccc---eeeecccC-CchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccce
Confidence 6544444432222 22334233 3323332 3333333 223567999998888888777776542 3
Q ss_pred CceEeeecCCCccc
Q 030396 163 IRAGVIHSDLSQTQ 176 (178)
Q Consensus 163 ~~~~~lh~~~~~~~ 176 (178)
+-+..+|+++|.+.
T Consensus 507 liv~PiYaNLPsel 520 (902)
T KOG0923|consen 507 LIVLPIYANLPSEL 520 (902)
T ss_pred EEEeeccccCChHH
Confidence 57788899998753
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.56 E-value=0.0027 Score=54.55 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=40.2
Q ss_pred CCcEEEeCcHHHHHHHHcC--CCC--CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 15 SCDILISTPLRLRLAIRRK--KID--LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~--~~~--~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
...|+|+|.+++...+... ... ..+ -++|+||||+..... +...++. .-++...+.||||--
T Consensus 338 ~~~iivtTiQk~~~~~~~~~~~~~~~~~~-~lvIvDEaHrs~~~~-----~~~~l~~-~~p~a~~lGfTaTP~ 403 (667)
T TIGR00348 338 DGGIIITTIQKFDKKLKEEEEKFPVDRKE-VVVIFDEAHRSQYGE-----LAKNLKK-ALKNASFFGFTGTPI 403 (667)
T ss_pred CCCEEEEEhHHhhhhHhhhhhccCCCCCC-EEEEEEcCccccchH-----HHHHHHh-hCCCCcEEEEeCCCc
Confidence 4689999999998654321 111 122 279999999874333 4444433 224678899999974
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.54 E-value=0.00017 Score=62.69 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=53.2
Q ss_pred CCcEEEeCcHHHHHHHHc---CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 15 SCDILISTPLRLRLAIRR---KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~---~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
+|+|+|+-|+++-+++-. -.-...+++++|+||+|.+.+.. -.-.++.++-. ....++++|||+.+.
T Consensus 605 nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~e-d~l~~Eqll~l---i~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 605 NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEE-DGLLWEQLLLL---IPCPFLVLSATIGNP 674 (1330)
T ss_pred hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccc-cchHHHHHHHh---cCCCeeEEecccCCH
Confidence 799999999999998866 33457899999999999997655 34455555555 467899999999864
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.52 E-value=0.00054 Score=60.14 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=45.3
Q ss_pred ChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
....|...+.+.+... ..+|+||||+|++.++.++..|...|++...+|+.
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnak 631 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAK 631 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCC
Confidence 5567889999988654 57899999999999999999999999999999974
No 121
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.46 E-value=0.00018 Score=63.39 Aligned_cols=72 Identities=26% Similarity=0.165 Sum_probs=50.5
Q ss_pred CCcEEEeCcHHHHHHHH--c-CCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 15 SCDILISTPLRLRLAIR--R-KKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~--~-~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
...++|||+..++.... + +-. .+. =+.|||||+|.+-.. ....+.++++.+-.-...++++|||+|+.+
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaYD~~--~~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDYEPE--DLPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccCCHH--HHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 46899999999997762 2 211 122 268899999999443 356677777653335678899999999986
Q ss_pred HHH
Q 030396 87 EEL 89 (178)
Q Consensus 87 ~~~ 89 (178)
...
T Consensus 639 ~~~ 641 (1110)
T TIGR02562 639 VKT 641 (1110)
T ss_pred HHH
Confidence 653
No 122
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.40 E-value=0.00087 Score=54.49 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred eCcHHHHHHHHcCCC--------CCCCeeEEEEeccccc-cccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 21 STPLRLRLAIRRKKI--------DLSRVEYLVLDEADKL-FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 21 ~TP~~l~~~l~~~~~--------~~~~l~~lViDE~d~l-l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
+||..++..+..+.+ .+++-+.+|+||||.= +......-.+.++... .++..++++|||+.. .-.+
T Consensus 133 ~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~--rpdLk~vvmSatl~a---~Kfq 207 (699)
T KOG0925|consen 133 TSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRN--RPDLKLVVMSATLDA---EKFQ 207 (699)
T ss_pred CChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhh--CCCceEEEeecccch---HHHH
Confidence 578787766544322 3788899999999973 2211234455555554 358999999999983 4456
Q ss_pred HhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHH----HHHhcCCCCEEEEeCCchHHHHHHHHhhhC------
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQ----SFAESLNPPVLIFVQSKDRAKELYGELAFD------ 161 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~----ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~------ 161 (178)
.|+.++..+.++. .-| +.- ++......+.++..+. +-.....+-+++|....++.+..++.+...
T Consensus 208 ~yf~n~Pll~vpg--~~P--vEi-~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~ 282 (699)
T KOG0925|consen 208 RYFGNAPLLAVPG--THP--VEI-FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGP 282 (699)
T ss_pred HHhCCCCeeecCC--CCc--eEE-EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcc
Confidence 6778877777764 222 222 3233333333333333 333445788999999999999988887532
Q ss_pred ---CCceEeeec
Q 030396 162 ---DIRAGVIHS 170 (178)
Q Consensus 162 ---g~~~~~lh~ 170 (178)
..++..+|-
T Consensus 283 ~~g~l~v~PLyP 294 (699)
T KOG0925|consen 283 QVGPLKVVPLYP 294 (699)
T ss_pred ccCCceEEecCc
Confidence 246676763
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.35 E-value=0.0035 Score=53.58 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|+.+|-.+|.+ ....+++||..=....+-|.++.--+||...-+.|.++.++|
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR 526 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEER 526 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHH
Confidence 477777777763 337899999988888899999999999999999999999988
No 124
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.34 E-value=0.006 Score=52.70 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=97.4
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-----CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-----NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-----~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+-++...++|..+-. -.+.+-+++|+||+...+..- ...+.+..++..++.....+|++-|+++...-++
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 35677777777665542 235567899999999887542 1233444455555677888999999999998888
Q ss_pred HHHhccCc-EEEEEcCCccccCCceEEEEEcCC-----------------------------------hhhHHHHHHHHH
Q 030396 90 ARSIMHDA-VRVIVGRKNTASESIKQKLVFAGS-----------------------------------EEGKLLALRQSF 133 (178)
Q Consensus 90 ~~~~~~~~-~~v~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~~k~~~l~~ll 133 (178)
++.+-++. +.+.. ++...+.......+.+.. ..+.....-.++
T Consensus 198 l~~~Rp~~~i~vI~-n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 198 LASCRPDENIHVIV-NTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHhCCCCcEEEEE-eeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 88876543 33333 121111111111111000 012233333344
Q ss_pred Hhc-CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcc
Q 030396 134 AES-LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQT 175 (178)
Q Consensus 134 ~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~ 175 (178)
... ..+++.||++|.+-++.+++..+..+.++..++|.-+..
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~ 319 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE 319 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc
Confidence 432 246788999999999999999999999999998865543
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0013 Score=56.52 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=85.3
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC----CChhhHHHHHhhCCCC------CceEEEEeecC
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG----NLLKHIDPVVKACSNP------SIVRSLFSATL 82 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~----~~~~~i~~i~~~~~~~------~~q~i~~SAT~ 82 (178)
...-.|.+.|-|-|+.-+.+.- .+..-+.+|+||||.=--+. .++.-+-.+-+. ... ....|++|||+
T Consensus 347 ~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k-~~ke~~~~kpLKLIIMSATL 424 (1172)
T KOG0926|consen 347 GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK-YYKEQCQIKPLKLIIMSATL 424 (1172)
T ss_pred CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH-HhhhhcccCceeEEEEeeeE
Confidence 3556799999999998776543 35566899999999852111 133333333333 222 35689999999
Q ss_pred cHHHHHHH--HHhcc-CcEEEEEcCCccccCCceEEEEEcCCh---hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHH
Q 030396 83 PDFVEELA--RSIMH-DAVRVIVGRKNTASESIKQKLVFAGSE---EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 83 ~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~ 156 (178)
. +.++. .+.+. -|..+.++... -|-.| +|-.-... .+-+...+.+=++.+.+-+|||+....+++.|+.
T Consensus 425 R--VsDFtenk~LFpi~pPlikVdARQ-fPVsI--HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~ 499 (1172)
T KOG0926|consen 425 R--VSDFTENKRLFPIPPPLIKVDARQ-FPVSI--HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCE 499 (1172)
T ss_pred E--ecccccCceecCCCCceeeeeccc-CceEE--EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHH
Confidence 7 33433 22344 23344444322 22122 22111111 1234445555567778899999999999999999
Q ss_pred HhhhC
Q 030396 157 ELAFD 161 (178)
Q Consensus 157 ~L~~~ 161 (178)
.|++.
T Consensus 500 kLRK~ 504 (1172)
T KOG0926|consen 500 KLRKR 504 (1172)
T ss_pred HHHhh
Confidence 99765
No 126
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.22 E-value=0.0011 Score=46.87 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=46.0
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCC-----------CCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKK-----------IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~-----------~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
.-....+++++|..++........ .......++|+||||.+.... .+..++. .....++.+|
T Consensus 107 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~----~~~~i~~---~~~~~~l~lT 179 (184)
T PF04851_consen 107 SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS----SYREIIE---FKAAFILGLT 179 (184)
T ss_dssp HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH----HHHHHHH---SSCCEEEEEE
T ss_pred cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH----HHHHHHc---CCCCeEEEEE
Confidence 334678999999999998875421 123466799999999995543 1666666 2577789999
Q ss_pred ecCc
Q 030396 80 ATLP 83 (178)
Q Consensus 80 AT~~ 83 (178)
||.+
T Consensus 180 ATp~ 183 (184)
T PF04851_consen 180 ATPF 183 (184)
T ss_dssp SS-S
T ss_pred eCcc
Confidence 9975
No 127
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.11 E-value=0.0025 Score=57.08 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=80.6
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhh------HHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKH------IDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~------i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
...-+|+|+||++ +++++ ....++++|.||.|.+.... .+. ++.|.+. +.++.+++++|..+.+.
T Consensus 1232 ~~~~~vii~tpe~-~d~lq----~iQ~v~l~i~d~lh~igg~~--g~v~evi~S~r~ia~q-~~k~ir~v~ls~~lana- 1302 (1674)
T KOG0951|consen 1232 LQKGQVIISTPEQ-WDLLQ----SIQQVDLFIVDELHLIGGVY--GAVYEVICSMRYIASQ-LEKKIRVVALSSSLANA- 1302 (1674)
T ss_pred hhhcceEEechhH-HHHHh----hhhhcceEeeehhhhhcccC--CceEEEEeeHHHHHHH-HHhheeEEEeehhhccc-
Confidence 3456999999998 45553 67889999999999986322 222 4555555 56678899998888753
Q ss_pred HHHHHHhccCcEEEEEcCC-ccccCCceEEEEEcCChhhHHHHHHH-----HHH-hcCCCCEEEEeCCchHHHHHHHHhh
Q 030396 87 EELARSIMHDAVRVIVGRK-NTASESIKQKLVFAGSEEGKLLALRQ-----SFA-ESLNPPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~~~~~~k~~~l~~-----ll~-~~~~~~~lIF~~t~~~~~~l~~~L~ 159 (178)
+.+ ..+.....+...+. ...|..+.-+.+...........+.+ +.+ ....++++||+++++.|..++.-|.
T Consensus 1303 ~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~ 1380 (1674)
T KOG0951|consen 1303 RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLV 1380 (1674)
T ss_pred hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccc
Confidence 333 11222222222222 23333333333333333322222221 111 3347789999999999999887663
No 128
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00081 Score=55.09 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=97.6
Q ss_pred CCCcEEEeCcHHHHHHHHc---CC--CC-CCCeeEEEEeccccccccCCChhhHHHHHhhC--CCCC-------------
Q 030396 14 FSCDILISTPLRLRLAIRR---KK--ID-LSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPS------------- 72 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~---~~--~~-~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~------------- 72 (178)
...||+||+|--|.-++.+ +. .+ ++++.++|+|.||.++... -+.+..|+.++ +|..
T Consensus 384 y~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN--wEhl~~ifdHLn~~P~k~h~~DfSRVR~wy 461 (698)
T KOG2340|consen 384 YKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN--WEHLLHIFDHLNLQPSKQHDVDFSRVRMWY 461 (698)
T ss_pred cccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh--HHHHHHHHHHhhcCcccccCCChhheehhe
Confidence 3689999999887777752 11 22 7999999999999998766 66777777773 2211
Q ss_pred --------ceEEEEeecCcHHHHHHHHHhccCc-EEEEEcCC--c----cccCCceEEE--EEcCC----hhhHHHHHHH
Q 030396 73 --------IVRSLFSATLPDFVEELARSIMHDA-VRVIVGRK--N----TASESIKQKL--VFAGS----EEGKLLALRQ 131 (178)
Q Consensus 73 --------~q~i~~SAT~~~~~~~~~~~~~~~~-~~v~~~~~--~----~~~~~i~~~~--~~~~~----~~~k~~~l~~ 131 (178)
+|+++||+-..+....+...++.+- ..|...+. + ...-.+.|.+ +.+.+ ...++.+..+
T Consensus 462 L~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~ 541 (698)
T KOG2340|consen 462 LDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVD 541 (698)
T ss_pred eccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHH
Confidence 6899999999998888888877652 22222111 1 1111122222 12222 1245555554
Q ss_pred HHH----hcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeee
Q 030396 132 SFA----ESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 132 ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
-+- +....-++||.++=-+--.+-.+|++.++....+|
T Consensus 542 ~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~ 583 (698)
T KOG2340|consen 542 KIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMIN 583 (698)
T ss_pred hhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHh
Confidence 432 22244579999998888888888887765544443
No 129
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.90 E-value=0.013 Score=49.82 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=84.6
Q ss_pred CcEEEeCcHHHHH-HHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC--CCCCceEEEEeecCcHHHHHHHHH
Q 030396 16 CDILISTPLRLRL-AIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 16 ~~Iii~TP~~l~~-~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
-.|-..|-|-|+. .+..+. +.+-+.+|+||||.=--+ .+.+.-+++.. -..+..+|+.|||+.. ..+...
T Consensus 446 T~IkymTDGiLLrEsL~d~~--L~kYSviImDEAHERslN---tDilfGllk~~larRrdlKliVtSATm~a--~kf~nf 518 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRD--LDKYSVIIMDEAHERSLN---TDILFGLLKKVLARRRDLKLIVTSATMDA--QKFSNF 518 (1042)
T ss_pred eeEEEeccchHHHHHhhhhh--hhheeEEEechhhhcccc---hHHHHHHHHHHHHhhccceEEEeeccccH--HHHHHH
Confidence 3467788888774 344443 556789999999985222 12223333332 2357889999999984 355555
Q ss_pred hccCcEEEEEcCCccccCCceEEEEEcCChhhHHH-HHHHHHH---hcCCCCEEEEeCCchHHHHHHHHhhhC-------
Q 030396 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLL-ALRQSFA---ESLNPPVLIFVQSKDRAKELYGELAFD------- 161 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~-~l~~ll~---~~~~~~~lIF~~t~~~~~~l~~~L~~~------- 161 (178)
|.+.|.+-.-+. . -|-.+ .+... +-++-+. .+...+. ....+-++||....+..+-.+..+.+.
T Consensus 519 Fgn~p~f~IpGR-T-yPV~~--~~~k~-p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~ 593 (1042)
T KOG0924|consen 519 FGNCPQFTIPGR-T-YPVEI--MYTKT-PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA 593 (1042)
T ss_pred hCCCceeeecCC-c-cceEE--EeccC-chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence 554554443322 2 22122 22112 1122222 2222222 223567999998888877777766432
Q ss_pred ---CCceEeeecCCCcc
Q 030396 162 ---DIRAGVIHSDLSQT 175 (178)
Q Consensus 162 ---g~~~~~lh~~~~~~ 175 (178)
+..+..+-+.||+.
T Consensus 594 ~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 594 PTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred CCCceEEEeehhhCchh
Confidence 56788888888764
No 130
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=96.59 E-value=0.0043 Score=45.33 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=35.4
Q ss_pred HHhHHhccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEec
Q 030396 6 VRSTDLSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDE 47 (178)
Q Consensus 6 ~~q~~~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE 47 (178)
..|.+.+++ ..++-||||||+.+++.++.++.+.++++|+|=
T Consensus 186 ~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 186 QAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred HHHHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 455555554 578899999999999999989999999999984
No 131
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.30 E-value=0.0099 Score=40.94 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=38.1
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+--|-+.|-+.+...+.+ .....+-+++|+||+|..-... .+.-.+.+.... ....+|++|||-|...
T Consensus 72 ~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~---g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES---GEAKVIFMTATPPGSE 140 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT---TS-EEEEEESS-TT--
T ss_pred CCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhhc---cCeeEEEEeCCCCCCC
Confidence 344666777777766654 3446788999999999974332 122223333222 3467899999988654
No 132
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.24 E-value=0.025 Score=49.64 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=55.8
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
...|+++||.-|..=+-.+.+++..+..+|+||||++.... ...-|-++.+. .+...-+.+|||.-.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~-~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-QEAFILRLYRQ-KNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-cHHHHHHHHHH-hCCCcceEEecCCCc
Confidence 35799999998887777788999999999999999998766 67777777777 666677888988865
No 133
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.20 E-value=0.084 Score=44.33 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=90.9
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcCCCC----CCCeeEEEEeccccccccC--CChhhHHHHHhhC----CCCCceEEEEe
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRKKID----LSRVEYLVLDEADKLFEVG--NLLKHIDPVVKAC----SNPSIVRSLFS 79 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~~~~----~~~l~~lViDE~d~ll~~~--~~~~~i~~i~~~~----~~~~~q~i~~S 79 (178)
..++.+++++.+-|..+....--+..+ +-...+.+.||+|..+... ....+++.+++.+ -+.+.|++-+|
T Consensus 379 A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~ 458 (1034)
T KOG4150|consen 379 ALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGD 458 (1034)
T ss_pred HHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCC
Confidence 345578999999999988766443333 4456788999999986542 1223333444332 33578999999
Q ss_pred ecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC-----hhhH---HHHHHHHHHh--cCCCCEEEEeCCch
Q 030396 80 ATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS-----EEGK---LLALRQSFAE--SLNPPVLIFVQSKD 149 (178)
Q Consensus 80 AT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~-----~~~k---~~~l~~ll~~--~~~~~~lIF~~t~~ 149 (178)
||+...++-..+.+.-+...... .+..|.+-++++++-++ +.+| +...-.++.+ .++-++|-||.+++
T Consensus 459 ~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~ 536 (1034)
T KOG4150|consen 459 TPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRK 536 (1034)
T ss_pred CCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHH
Confidence 99998877666665545433333 23345556666654332 1223 2222223322 23579999999999
Q ss_pred HHHHHHHHh
Q 030396 150 RAKELYGEL 158 (178)
Q Consensus 150 ~~~~l~~~L 158 (178)
-|+-+-..-
T Consensus 537 ~CEL~~~~~ 545 (1034)
T KOG4150|consen 537 LCELVLCLT 545 (1034)
T ss_pred HHHHHHHHH
Confidence 999865543
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.18 Score=43.78 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=73.0
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccc---ccC--CChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF---EVG--NLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll---~~~--~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
...+.+.|||||=--+. ..++++..+|+||=|.-- +++ +...++--...+ ..+.++++-|||-+-+
T Consensus 292 ~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~--~~~~pvvLgSATPSLE 362 (730)
T COG1198 292 ARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK--KENAPVVLGSATPSLE 362 (730)
T ss_pred HhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH--HhCCCEEEecCCCCHH
Confidence 44577999999963322 247788999999999853 112 344444443443 3688999999997743
Q ss_pred HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHH-----HHHHHHHHh--cCCCCEEEEeCCchHHH
Q 030396 86 VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKL-----LALRQSFAE--SLNPPVLIFVQSKDRAK 152 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~-----~~l~~ll~~--~~~~~~lIF~~t~~~~~ 152 (178)
.+....-+....+.+........-....++.+..+..+. ..|++.+++ ....|+|+|.|.+.-+-
T Consensus 363 --S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~ 434 (730)
T COG1198 363 --SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP 434 (730)
T ss_pred --HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc
Confidence 333332222233333322221111222344444443333 345555532 34689999999876543
No 135
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=95.48 E-value=0.003 Score=55.63 Aligned_cols=50 Identities=28% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCcEEEeCcHHHHHHHHc--CCCCCCCeeEEEEeccccccccCCChhhHHHHHh
Q 030396 15 SCDILISTPLRLRLAIRR--KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVK 66 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~--~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~ 66 (178)
.++|+|+||++.....+. +.--+.+++.+|+||.|.+-+. ..+.++.|..
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~--rgPVle~ivs 1071 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED--RGPVLEVIVS 1071 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCC--CcceEEEEee
Confidence 578999999998777763 3334889999999999999765 2444444433
No 136
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=95.35 E-value=0.058 Score=41.22 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCCcEEEeCcHHHH--------HHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 14 FSCDILISTPLRLR--------LAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 14 ~~~~Iii~TP~~l~--------~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
...+++|+|.+.+. +.+.. -+.+.+|+||+|.+=+ ........+.. +. ....+++|||-
T Consensus 106 ~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~---~~s~~~~~l~~-l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 106 PKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKN---KDSKRYKALRK-LR-ARYRWLLSGTP 172 (299)
T ss_dssp CCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTT---TTSHHHHHHHC-CC-ECEEEEE-SS-
T ss_pred ccceeeecccccccccccccccccccc-----ccceeEEEeccccccc---ccccccccccc-cc-cceEEeecccc
Confidence 56889999999888 22322 3378999999999932 23444445554 33 66678899994
No 137
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=95.03 E-value=0.045 Score=34.26 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=33.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+++++||++-..+...+..|+..|+++..+.||++.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~ 87 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKT 87 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHH
Confidence 5689999999888999999999999999999999853
No 138
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=95.01 E-value=0.055 Score=33.85 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=34.6
Q ss_pred hcCCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCCc
Q 030396 135 ESLNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLSQ 174 (178)
Q Consensus 135 ~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~~ 174 (178)
.....+++|||++-..+..++..|...|++ +..+.||+..
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 344678999999999999999999999997 8999998753
No 139
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.79 E-value=0.044 Score=34.96 Aligned_cols=38 Identities=8% Similarity=0.046 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
..++++++|.+-.++...+..|...|+.+..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 35789999999889999999999999999999999854
No 140
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=94.75 E-value=0.15 Score=46.13 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=36.7
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..++|||..=....+-|+++|..+||+.--+.|+++.+.|
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelR 738 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELR 738 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHH
Confidence 6799999999999999999999999999999999887655
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=94.74 E-value=0.69 Score=38.39 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=37.3
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..+.+|||.-..--+.+...+.++++...-+.|..+.++|
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R 531 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRR 531 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhH
Confidence 6689999999999999999999999999999999998877
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.73 E-value=0.058 Score=46.08 Aligned_cols=41 Identities=34% Similarity=0.366 Sum_probs=31.4
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~ 53 (178)
...+||||+++.-|...++.+.--+-..+++||||||.+.+
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 36789999999888876655432345578999999999953
No 143
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=94.28 E-value=0.24 Score=41.03 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=38.0
Q ss_pred cCCCcEEEeCcHHHH-------------HHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 13 KFSCDILISTPLRLR-------------LAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~-------------~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..++.|+|+|=..+. +.++. ..-.++++||+|.+-..- |+..+.-+-.++ .+.++
T Consensus 388 ~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~-----~EWGllllDEVHvvPA~M-FRRVlsiv~aHc------KLGLT 455 (776)
T KOG1123|consen 388 PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG-----REWGLLLLDEVHVVPAKM-FRRVLSIVQAHC------KLGLT 455 (776)
T ss_pred CCCCcEEEEeeehhhhcccccHHHHHHHHHHhc-----CeeeeEEeehhccchHHH-HHHHHHHHHHHh------hccce
Confidence 457889999864433 23332 233589999999997766 666555554442 35677
Q ss_pred ecCc
Q 030396 80 ATLP 83 (178)
Q Consensus 80 AT~~ 83 (178)
||+-
T Consensus 456 ATLv 459 (776)
T KOG1123|consen 456 ATLV 459 (776)
T ss_pred eEEe
Confidence 8864
No 144
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=94.26 E-value=0.044 Score=46.86 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.8
Q ss_pred hHHhccCCCcEEEeCcHHH-HHHHHcCCC-------------------------CCCCeeEEEEecccccc
Q 030396 8 STDLSKFSCDILISTPLRL-RLAIRRKKI-------------------------DLSRVEYLVLDEADKLF 52 (178)
Q Consensus 8 q~~~l~~~~~Iii~TP~~l-~~~l~~~~~-------------------------~~~~l~~lViDE~d~ll 52 (178)
+.+....+|||++||...+ .++++.+.. -...+.+.|+||+|.++
T Consensus 185 ~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 185 DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 4444556899999999998 466654321 13667899999999975
No 145
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=93.94 E-value=1.1 Score=39.28 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhh-hCCCceEeeecCCCcccc
Q 030396 123 EGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELA-FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 123 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~-~~g~~~~~lh~~~~~~~R 177 (178)
..|+..+..+++. ....+++.|..|+.....+...|. ..||...-+.|..+-..|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 3577788777763 335699999999999999999998 689999999999887766
No 146
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=93.87 E-value=0.14 Score=32.38 Aligned_cols=38 Identities=11% Similarity=-0.066 Sum_probs=32.9
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
....+++++|++-..+...+..|...|+ ++..+.||+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3467899999998999999999999999 6888999874
No 147
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.83 E-value=0.12 Score=33.07 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=32.4
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
.+.++++|||.+-.++...+..|...|++ +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45678999999988888899999999994 888999875
No 148
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.36 E-value=0.059 Score=38.24 Aligned_cols=43 Identities=28% Similarity=0.242 Sum_probs=27.9
Q ss_pred hccCCCcEEEeCcHHHHHHHHc-C--CCCCCCeeEEEEecccccccc
Q 030396 11 LSKFSCDILISTPLRLRLAIRR-K--KIDLSRVEYLVLDEADKLFEV 54 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~-~--~~~~~~l~~lViDE~d~ll~~ 54 (178)
.....++|||++=.-|++-... . .+++++ ..+||||||.+.+.
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~-~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKD-NIVIFDEAHNLEDA 160 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCC-EEEEETTGGGCGGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccC-cEEEEecccchHHH
Confidence 4446789999998777654322 2 234444 68999999999664
No 149
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=93.29 E-value=0.17 Score=39.23 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=30.0
Q ss_pred EEEEeccccccccCC-------ChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 42 YLVLDEADKLFEVGN-------LLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 42 ~lViDE~d~ll~~~~-------~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
.+||||+|..-+... ....+..+-+. + ++.+++.+|||--.+.+.
T Consensus 175 vivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~-L-P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 175 VIVFDECHKAKNLSSGSKKPSKTGIAVLELQNR-L-PNARVVYASATGASEPRN 226 (303)
T ss_pred eEEeccchhcCCCCccCccccHHHHHHHHHHHh-C-CCCcEEEecccccCCCce
Confidence 899999999855431 12344445555 3 566799999998755443
No 150
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=93.26 E-value=0.16 Score=33.03 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCc--hHHHHHHHHhhhCCCceEeeecCCC
Q 030396 137 LNPPVLIFVQSK--DRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~--~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
...++++||++- ..+...+..|...|+++..+.||+.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 357899999875 3788899999999999999999874
No 151
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=93.23 E-value=0.13 Score=32.51 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=31.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..++++||.+-.++...+..|...|+++..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 568999999988888899999999999888999875
No 152
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=93.22 E-value=0.11 Score=34.50 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=33.0
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC--ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI--RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~--~~~~lh~~~~ 173 (178)
..+++++||++-.++...+..|...|+ ++..+.||+.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 467899999998899999999999999 6999999874
No 153
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=93.10 E-value=0.25 Score=32.02 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc--eEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR--AGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~--~~~lh~~~~~ 174 (178)
...+++|||.+-.++...+..|...|++ +..+.||++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3568999999988888889999999994 8899999853
No 154
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=93.03 E-value=1 Score=39.25 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred EEEEeecCcHHHHHHHHHhccCcEEEEEcCC-ccccCCceEEEEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHH
Q 030396 75 RSLFSATLPDFVEELARSIMHDAVRVIVGRK-NTASESIKQKLVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRA 151 (178)
Q Consensus 75 ~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~ 151 (178)
.-.+|.|......++.+-| +=+ .+.+++. +....+....+ +. ....|...+.+-+.+ ...+|+||.|.|.+.+
T Consensus 365 LsGMTGTa~t~~~Ef~~iY-~l~-Vv~IPtnkp~~R~d~~d~i-y~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~S 440 (764)
T PRK12326 365 VCGMTGTAVAAGEQLRQFY-DLG-VSVIPPNKPNIREDEADRV-YA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAES 440 (764)
T ss_pred heeecCCChhHHHHHHHHh-CCc-EEECCCCCCceeecCCCce-Ee-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 4466777765544444444 332 3333322 22222222223 33 445677777776653 2478999999999999
Q ss_pred HHHHHHhhhCCCceEeeecC
Q 030396 152 KELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 152 ~~l~~~L~~~g~~~~~lh~~ 171 (178)
+.++..|.+.|++...+++.
T Consensus 441 E~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 441 EELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred HHHHHHHHhCCCcceeeccC
Confidence 99999999999999888774
No 155
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=92.92 E-value=0.23 Score=30.39 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=33.2
Q ss_pred hcCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 135 ESLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 135 ~~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.....+++++|++...+...+..|...|+ ++..+-||+.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 34567899999999999999999999987 6778888874
No 156
>PRK06893 DNA replication initiation factor; Validated
Probab=92.91 E-value=0.13 Score=38.35 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=32.5
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
+.+.+.+++||+|.+.........+..++........+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4567899999999986443234456666665333345677888887665
No 157
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=92.88 E-value=0.22 Score=31.55 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
..++++++|++-.++...+..|.+.|+ ++..+.||+.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 357899999999889999999999888 6888999864
No 158
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=92.79 E-value=0.25 Score=32.37 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+..++++||++-..+...+..|...|+ ++..+.||++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 467899999998899999999999999 5888888874
No 159
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=92.75 E-value=0.16 Score=32.58 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+..++++||++-..+...+..|...|+ .+..+.||+.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 356899999998899999999999999 4888888875
No 160
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=92.73 E-value=0.23 Score=32.86 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=32.5
Q ss_pred cCCCCEEEEeCC-chHHHHHHHHhhhCCCc-eEeeecCCCc
Q 030396 136 SLNPPVLIFVQS-KDRAKELYGELAFDDIR-AGVIHSDLSQ 174 (178)
Q Consensus 136 ~~~~~~lIF~~t-~~~~~~l~~~L~~~g~~-~~~lh~~~~~ 174 (178)
...+++++||++ -..+...+..|...|++ +..+.||+..
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 346789999999 58898999999999985 8899998753
No 161
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=92.60 E-value=0.17 Score=34.00 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCCEEEEeC-CchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 137 LNPPVLIFVQ-SKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~-t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
+..+++|||+ +-.++...+..|...|+++..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4568999997 5677888888999999999999999754
No 162
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=92.58 E-value=0.22 Score=31.31 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=30.2
Q ss_pred CCCEEEEeCC--chHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 138 NPPVLIFVQS--KDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t--~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
..++++||.+ +..+...+..|...|+ ++..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999998 4557888999999998 6888999875
No 163
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=92.41 E-value=0.25 Score=31.52 Aligned_cols=38 Identities=5% Similarity=0.111 Sum_probs=32.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~~ 174 (178)
...++++||++-.++...+..|.+.|+ ++..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 367899999998899999999999999 58889998753
No 164
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=92.38 E-value=0.32 Score=31.12 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=31.5
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..+++++|.+-..+...+..|...|++ +..+.||++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 568999999888888999999999995 888999875
No 165
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=92.16 E-value=0.26 Score=30.86 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|+|++-..+...+..|...|+ ++..+.||+.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 467899999999999999999999999 5788888864
No 166
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.11 E-value=1.4 Score=39.31 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=28.4
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll 52 (178)
...++|||+.-.-|++.+....-.+..-+++|+||||.|.
T Consensus 414 a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred HhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 4678999999887776664332222333699999999985
No 167
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=91.98 E-value=0.22 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
..++++||++|.+..+.+++.|..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhh
Confidence 367999999999999999999975
No 168
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=91.93 E-value=0.33 Score=39.79 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=34.2
Q ss_pred CCCCCeeEE-EEeccccccccC--CChhhHHHHHhhCCCCCceEEEEeec
Q 030396 35 IDLSRVEYL-VLDEADKLFEVG--NLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 35 ~~~~~l~~l-ViDE~d~ll~~~--~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
-|+.+.+++ .|||||.++++. .+.+.|+.+.+.+-+...-+.++|-+
T Consensus 250 GD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~ 299 (502)
T PF05872_consen 250 GDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQN 299 (502)
T ss_pred CCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 367777874 599999999876 67888888888844445556666544
No 169
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=91.62 E-value=0.21 Score=31.79 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
...+++|||++-..+...+..|...|+. +..+.||+.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 4578999998888888899999999996 888888874
No 170
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.47 E-value=0.31 Score=40.09 Aligned_cols=79 Identities=9% Similarity=0.040 Sum_probs=48.0
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHH----c--CCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceE
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIR----R--KKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVR 75 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~----~--~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~ 75 (178)
........+..++..|++.+...+. . +.+ .+.+.+++|+||+|.+-......+.+..++..+.....|+
T Consensus 163 ~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~i 242 (450)
T PRK14087 163 NYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQL 242 (450)
T ss_pred HHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcE
Confidence 3333334567888888887765442 1 111 1567889999999988533224566777777744455676
Q ss_pred EEEeecCcHH
Q 030396 76 SLFSATLPDF 85 (178)
Q Consensus 76 i~~SAT~~~~ 85 (178)
++.|-.-|..
T Consensus 243 Iltsd~~P~~ 252 (450)
T PRK14087 243 FFSSDKSPEL 252 (450)
T ss_pred EEECCCCHHH
Confidence 5554444433
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=91.44 E-value=0.21 Score=38.56 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.9
Q ss_pred cCCCcEEEeCcHHHHHHHHcC--CCCCCCeeEEEEeccccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~--~~~~~~l~~lViDE~d~ll~ 53 (178)
...+||||++-.-|++-..++ ..++ .-.++||||||.+.+
T Consensus 209 ~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 209 IEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 367999999988877654222 2344 358999999999954
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=91.44 E-value=0.21 Score=38.56 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.9
Q ss_pred cCCCcEEEeCcHHHHHHHHcC--CCCCCCeeEEEEeccccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~--~~~~~~l~~lViDE~d~ll~ 53 (178)
...+||||++-.-|++-..++ ..++ .-.++||||||.+.+
T Consensus 209 ~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 209 IEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 367999999988877654222 2344 358999999999954
No 173
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=91.36 E-value=0.96 Score=40.11 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
....|...+.+-+.. ...+|+||.|.|.+.++.++..|.+.|++...+++.
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 344566666665553 247799999999999999999999999998888764
No 174
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.25 E-value=0.55 Score=38.64 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=44.1
Q ss_pred CCCcEEEeCcHHHHHHH----HcCCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 14 FSCDILISTPLRLRLAI----RRKKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l----~~~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+..++..|...+...+ ..+.. .+.+.+.+++||+|.+.......+.+..++..+.....|+++.|.+-|.
T Consensus 168 ~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~ 247 (445)
T PRK12422 168 SGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQ 247 (445)
T ss_pred cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHH
Confidence 35677777776554332 22221 1567889999999998654324566666766533345676665555555
Q ss_pred HHH
Q 030396 85 FVE 87 (178)
Q Consensus 85 ~~~ 87 (178)
++.
T Consensus 248 ~l~ 250 (445)
T PRK12422 248 DLK 250 (445)
T ss_pred HHh
Confidence 443
No 175
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.11 E-value=3.7 Score=31.14 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred hHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhcc------Cc-----EEEEE--cCCccccCCceEEEEEcCChhhHH
Q 030396 60 HIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMH------DA-----VRVIV--GRKNTASESIKQKLVFAGSEEGKL 126 (178)
Q Consensus 60 ~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~------~~-----~~v~~--~~~~~~~~~i~~~~~~~~~~~~k~ 126 (178)
.+-.+++.+...+.-++++|+-.++......+..-. +. .++.. ........-+-+.-+......+|-
T Consensus 85 ~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG 164 (252)
T PF11019_consen 85 DVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKG 164 (252)
T ss_pred hHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccH
Confidence 344444443334677899998886543332222211 11 11100 001111112223333444667899
Q ss_pred HHHHHHHHhcC-CCCEEEEe-CCchHHHHHHHHhhhCCCceEeee
Q 030396 127 LALRQSFAESL-NPPVLIFV-QSKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 127 ~~l~~ll~~~~-~~~~lIF~-~t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
..|..++...+ ..+.|||. ++.+..+.+.+++...|+...-+|
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 99999998765 34466666 788889999999999998777766
No 176
>PRK05642 DNA replication initiation factor; Validated
Probab=90.93 E-value=0.3 Score=36.51 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
+.+.+++|+|++|.+-........+..+++.+.....+ ++++++.++.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~-ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRR-LLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCE-EEEeCCCCHH
Confidence 45567999999998854332456677777763333455 5666666543
No 177
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=90.85 E-value=0.26 Score=37.61 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCcEEEeCcHHHH-HHHHcCC----CC--CCCeeEEEEecccccccc
Q 030396 15 SCDILISTPLRLR-LAIRRKK----ID--LSRVEYLVLDEADKLFEV 54 (178)
Q Consensus 15 ~~~Iii~TP~~l~-~~l~~~~----~~--~~~l~~lViDE~d~ll~~ 54 (178)
.++|+.||.+.+. +.++... .. .....+.|+||+|.++-+
T Consensus 166 ~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 166 AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 4789999999977 5565421 11 578899999999997644
No 178
>PRK08727 hypothetical protein; Validated
Probab=90.59 E-value=0.38 Score=35.90 Aligned_cols=71 Identities=10% Similarity=-0.069 Sum_probs=36.6
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.+..+++.+.+.+...+..-.-.+.+...+|+||+|.+.........+..++........+ +++++..++.
T Consensus 68 ~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~-vI~ts~~~p~ 138 (233)
T PRK08727 68 AGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGIT-LLYTARQMPD 138 (233)
T ss_pred cCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCe-EEEECCCChh
Confidence 3455555555444432221111245667999999999865432333444555552222344 4455554443
No 179
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=90.31 E-value=1.1 Score=30.90 Aligned_cols=37 Identities=14% Similarity=-0.010 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|+|.+-..+...+..|...|+ ++..+.||+.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 357899999999999999999999998 8999999864
No 180
>PRK05320 rhodanese superfamily protein; Provisional
Probab=90.29 E-value=0.64 Score=35.35 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..+++++||.+=.+|+..+..|++.|++ +..+.||+.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 5678999999999999999999999994 889999874
No 181
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.14 E-value=0.64 Score=41.26 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=32.1
Q ss_pred cEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHH
Q 030396 17 DILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDP 63 (178)
Q Consensus 17 ~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~ 63 (178)
.|..+|-|-+++.+..+ +.-+.++++||+|...-.+.|...+.+
T Consensus 474 ~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr 517 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLR 517 (1282)
T ss_pred ceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHH
Confidence 37888888888888876 345678999999998665545444443
No 182
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.04 E-value=0.52 Score=41.80 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.0
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccc
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll 52 (178)
.-...+||||+-.--|...+..+.. +..-+++||||||.+-
T Consensus 409 ~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 409 EKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLM 449 (820)
T ss_pred HHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhH
Confidence 3346799999999877776644432 4567899999999995
No 183
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.57 E-value=0.53 Score=42.37 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=29.6
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll 52 (178)
...+||||+-.--|+..+..+.-.+..-+++||||||.+-
T Consensus 429 a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 429 AKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred HhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 4679999999987776653322233446899999999995
No 184
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.15 E-value=1.3 Score=36.49 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCCcEEEeCcHHHHHHH----HcCCCC-----C-CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 14 FSCDILISTPLRLRLAI----RRKKID-----L-SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l----~~~~~~-----~-~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.+..++..|...+..-+ ..+..+ + ...+.+++||+|.+.........+..++..+.....|+++.|..-|
T Consensus 159 ~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p 238 (440)
T PRK14088 159 PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_pred CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCH
Confidence 35678888887755433 222211 1 2578999999999865431334555566553334556555544444
Q ss_pred HHHHH
Q 030396 84 DFVEE 88 (178)
Q Consensus 84 ~~~~~ 88 (178)
..+..
T Consensus 239 ~~l~~ 243 (440)
T PRK14088 239 QKLSE 243 (440)
T ss_pred HHHHH
Confidence 44443
No 185
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=89.00 E-value=0.34 Score=35.55 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.7
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
...-++|+||+|.-++.. ....+-.+++. ...+.|+++.|
T Consensus 157 ~~~p~~ilDEvd~~LD~~-~~~~l~~~l~~-~~~~~Q~ii~T 196 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQ-NRKRLADLLKE-LSKQSQFIITT 196 (220)
T ss_dssp S--SEEEEESTTTTS-HH-HHHHHHHHHHH-HTTTSEEEEE-
T ss_pred cccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 345689999999999988 67777777777 66789988764
No 186
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.95 E-value=0.66 Score=40.40 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=28.2
Q ss_pred cCCCcEEEeCcHHHHHHHH--cCCCCCC-CeeEEEEecccccc
Q 030396 13 KFSCDILISTPLRLRLAIR--RKKIDLS-RVEYLVLDEADKLF 52 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~--~~~~~~~-~l~~lViDE~d~ll 52 (178)
...+||||+-.--|+.-+. .+.+-.. .-..+||||||.|-
T Consensus 217 a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~ 259 (697)
T PRK11747 217 IDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLP 259 (697)
T ss_pred HhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchH
Confidence 3678999999987775553 2322221 35789999999995
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.86 E-value=9.1 Score=33.35 Aligned_cols=71 Identities=4% Similarity=-0.050 Sum_probs=42.6
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc-cccC-CChhhHHHHHhhC-CCCCceEEEEeecCcHHHH
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-FEVG-NLLKHIDPVVKAC-SNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l-l~~~-~~~~~i~~i~~~~-~~~~~q~i~~SAT~~~~~~ 87 (178)
...+.++|||||-.-+. ..+.++..+|+||=|.- ...+ ...-+.+++.-.. ...+..+++-|||-+-+..
T Consensus 236 ~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 33456889999864332 24678889999998764 2222 1222333332210 2367889999999885544
Q ss_pred H
Q 030396 88 E 88 (178)
Q Consensus 88 ~ 88 (178)
.
T Consensus 309 ~ 309 (665)
T PRK14873 309 A 309 (665)
T ss_pred H
Confidence 3
No 188
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=88.70 E-value=0.4 Score=34.95 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=23.6
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCC-C-CCeeEEEEeccccccc
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKID-L-SRVEYLVLDEADKLFE 53 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~-~-~~l~~lViDE~d~ll~ 53 (178)
.+-+.++||++|+..... ..+. . ...+++|+|||-.+..
T Consensus 166 ~~l~~~~vi~~T~~~~~~----~~~~~~~~~~d~vIvDEAsq~~e 206 (236)
T PF13086_consen 166 FILKEADVIFTTLSSAAS----PFLSNFKEKFDVVIVDEASQITE 206 (236)
T ss_dssp HHHHT-SEEEEETCGGG-----CCGTT-----SEEEETTGGGS-H
T ss_pred hhcccccccccccccchh----hHhhhhcccCCEEEEeCCCCcch
Confidence 444679999999976522 2222 2 2788999999998844
No 189
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=88.59 E-value=0.73 Score=29.73 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=31.7
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..++++|+|.+-..+...+..|...|+. +..+.||++
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 3567999999988999999999999995 788888874
No 190
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.44 E-value=0.25 Score=43.71 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=44.8
Q ss_pred EEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhcc
Q 030396 42 YLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMH 95 (178)
Q Consensus 42 ~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 95 (178)
+-+|||+|.-++.+ ++..+..+++. +..+.| |.+.||.|++...+.+|++
T Consensus 1122 FYlfDEIDAaLDaQ-yR~aVa~lIke-lS~~aQ--FI~TTFRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1122 FYLFDEIDAALDAQ-YRTAVADLIKE-LSDSAQ--FITTTFRPELLSVADKFYG 1171 (1200)
T ss_pred hhhHhHHhhhccHH-HHHHHHHHHHH-Hhhccc--eEeecccHHHHHHHHhhhc
Confidence 67999999999999 99999999999 888899 5568999999999999866
No 191
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=88.09 E-value=0.82 Score=30.12 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~~ 174 (178)
...++++||++-..+...+..|...|++ +..+.||++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4677999999989999999999999995 7778888764
No 192
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.99 E-value=0.28 Score=36.32 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=64.7
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHH----HcCCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEE
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAI----RRKKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l----~~~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~ 77 (178)
.+.....++..|+..|...+.+.+ ..+.+ .+...+++++|.+|.+-......+.+..++..+.....|+++
T Consensus 56 ~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ 135 (219)
T PF00308_consen 56 NEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLIL 135 (219)
T ss_dssp HHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEE
Confidence 333333456788888887766433 33332 267889999999999855432455666666664445678777
Q ss_pred EeecCcHHHH----HHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhc
Q 030396 78 FSATLPDFVE----ELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES 136 (178)
Q Consensus 78 ~SAT~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 136 (178)
.|...|..+. ++..++... ..+.+ ..++.+.+...+.......
T Consensus 136 ts~~~P~~l~~~~~~L~SRl~~G-l~~~l---------------~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 136 TSDRPPSELSGLLPDLRSRLSWG-LVVEL---------------QPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp EESS-TTTTTTS-HHHHHHHHCS-EEEEE-------------------HHHHHHHHHHHHHHT
T ss_pred EeCCCCccccccChhhhhhHhhc-chhhc---------------CCCCHHHHHHHHHHHHHHh
Confidence 7767665432 333343222 22222 3345566777777766654
No 193
>PLN02160 thiosulfate sulfurtransferase
Probab=87.99 E-value=0.87 Score=31.01 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=32.5
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...++++||.+=.++...+..|...|+ .+..+.||+.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 457899999999999999999999999 5888888875
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.97 E-value=2.2 Score=28.09 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=20.8
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
.++|+||+|.+. . .+.++.+.+..-....++++++
T Consensus 89 ~~lviDe~~~l~--~--~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLF--S--DEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHH--T--HHHHHHHHHHTCSCBEEEEEEE
T ss_pred eEEEEeChHhcC--C--HHHHHHHHHHHhCCCCeEEEEE
Confidence 799999999974 2 4444444444113445555543
No 195
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.96 E-value=0.92 Score=38.78 Aligned_cols=80 Identities=11% Similarity=0.003 Sum_probs=48.6
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHH----HcCCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEE
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAI----RRKKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS 76 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l----~~~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i 76 (178)
..+......+..++..|.+.+.+.+ ..+.. .+.++++|+||++|.+.........+..+++.+...+.+++
T Consensus 335 a~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~II 414 (617)
T PRK14086 335 GHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIV 414 (617)
T ss_pred HHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEE
Confidence 3333333456788888887766333 22221 14678899999999986543245666677777444567777
Q ss_pred EEeecCcHH
Q 030396 77 LFSATLPDF 85 (178)
Q Consensus 77 ~~SAT~~~~ 85 (178)
+.|-.-|.+
T Consensus 415 ITSd~~P~e 423 (617)
T PRK14086 415 LSSDRPPKQ 423 (617)
T ss_pred EecCCChHh
Confidence 655444443
No 196
>PRK06526 transposase; Provisional
Probab=87.91 E-value=1.9 Score=32.76 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=38.9
Q ss_pred cCCCcEEEeCcHHHHHHHHc----CCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 13 KFSCDILISTPLRLRLAIRR----KKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~----~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
..+..+++.|...+.+.+.. +.+ .+.+.+++|+||++..-....-...+..++.. ...+..+++.|..-+
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~-r~~~~s~IitSn~~~ 202 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSS-RYERASLIVTSNKPF 202 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHH-HHhcCCEEEEcCCCH
Confidence 34667777777666655431 111 25677899999999874322123455666654 222344555444433
No 197
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=87.86 E-value=2.9 Score=37.20 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHH-h-cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFA-E-SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~-~-~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
....|...+.+-+. . ...+|+||-|.|.+..+.++..|.+.|++...+++.
T Consensus 405 t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCC
Confidence 44456666655544 2 347899999999999999999999999999888874
No 198
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=87.78 E-value=2.1 Score=27.71 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=29.9
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..++++||++-.++...+..|.+.|++....-||+.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457999999999999999999999997665567753
No 199
>PRK01415 hypothetical protein; Validated
Probab=87.61 E-value=1.1 Score=33.85 Aligned_cols=38 Identities=5% Similarity=-0.076 Sum_probs=33.3
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
...+++++||.+=.+|+..+..|.+.|++ +..+.||+.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 45678999999999999999999999995 888999853
No 200
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.54 E-value=1.9 Score=35.50 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCcEEEeCcHHHHHHH----HcCCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 15 SCDILISTPLRLRLAI----RRKKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l----~~~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
+..++..|...+...+ ..+.. .+.+.+.+++||+|.+.......+.+..++..+.....++++ +++.++
T Consensus 178 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii-ts~~~p 255 (450)
T PRK00149 178 NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL-TSDRPP 255 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE-ECCCCH
Confidence 5667777766554322 21111 245678999999999854321234555666553334556544 555554
No 201
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=87.32 E-value=1.4 Score=30.97 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred CCCcEEEeCcHH---------HHHHHHc---CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 14 FSCDILISTPLR---------LRLAIRR---KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 14 ~~~~Iii~TP~~---------l~~~l~~---~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
.-||+.+..|+. +.++... ... -..-+.+||||||.|-... ...+.+++.. .+.+..+++.+..
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~-~~~~KviiI~~ad~l~~~a--~NaLLK~LEe-pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPS-EGKYKVIIIDEADKLTEEA--QNALLKTLEE-PPENTYFILITNN 141 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-T-TSSSEEEEEETGGGS-HHH--HHHHHHHHHS-TTTTEEEEEEES-
T ss_pred cCcceEEEecccccchhhHHHHHHHHHHHHHHHh-cCCceEEEeehHhhhhHHH--HHHHHHHhcC-CCCCEEEEEEECC
Confidence 468888877763 2222222 222 3578999999999997665 7777777887 6666666665543
Q ss_pred C
Q 030396 82 L 82 (178)
Q Consensus 82 ~ 82 (178)
.
T Consensus 142 ~ 142 (162)
T PF13177_consen 142 P 142 (162)
T ss_dssp G
T ss_pred h
Confidence 3
No 202
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=87.18 E-value=1.6 Score=34.66 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCCeeEEEEeccccccccC------CChhhHHHHHhhCCC------CCceEEEEeecCcHH-HHHHHHHhccCcEEEEEc
Q 030396 37 LSRVEYLVLDEADKLFEVG------NLLKHIDPVVKACSN------PSIVRSLFSATLPDF-VEELARSIMHDAVRVIVG 103 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~------~~~~~i~~i~~~~~~------~~~q~i~~SAT~~~~-~~~~~~~~~~~~~~v~~~ 103 (178)
....+++|+||||.|...+ ...+++..+++. .. -..|++--+...... +.+....+-...
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~-~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~~~~~~------ 153 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR-AKVVVFFYDENQSIRPSEIGTLENLEEIAENLGIEV------ 153 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc-CCEEEEEEccccEeecccCCCHHHHHHHHHhcCCcc------
Confidence 4678899999999998832 235777787776 22 123444433333322 333333321111
Q ss_pred CCccccC-CceEEEEEcCChhhHHHHHHHHHHhcCC---------CCEEEEeCCchHHHHHHHHhhhCCCceEee
Q 030396 104 RKNTASE-SIKQKLVFAGSEEGKLLALRQSFAESLN---------PPVLIFVQSKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 104 ~~~~~~~-~i~~~~~~~~~~~~k~~~l~~ll~~~~~---------~~~lIF~~t~~~~~~l~~~L~~~g~~~~~l 168 (178)
... .+..++ .+.....-...+..++..... .--+-++.+.+.++.......+.+..+..+
T Consensus 154 ----~~~~~L~~q~-R~~~~~~~~~wI~~ll~~~~~~~~~~~~~~~yd~~~f~~~~~~~~~i~~k~~~~~~~rlv 223 (352)
T PF09848_consen 154 ----RHFFELKTQF-RCHGSKEYIDWIDNLLDNKNISPKPFNPDENYDFRVFDSPEEMKEAIKEKNKEGGLSRLV 223 (352)
T ss_pred ----ccCcCcCcce-ecCCCHHHHHHHHHHHhccccCccccccCCceeEEEECCHHHHHHHHHHHhcccCCceEE
Confidence 111 344444 554455566777777753221 123556667777776666665554444443
No 203
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=86.58 E-value=1.9 Score=29.41 Aligned_cols=49 Identities=6% Similarity=-0.024 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCC---chHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQS---KDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t---~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+..++.-+.-....++||||++ -..|-.+.-.|...|+ ++..+.|+++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 33333333333346689999986 4556677777888898 4889999875
No 204
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.44 E-value=1.4 Score=34.43 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC---cHHHHHHHHHh
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL---PDFVEELARSI 93 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~---~~~~~~~~~~~ 93 (178)
....+.+|+||||.|-.+. ...+++.+.. .+....+++...-+ ++.+...+.+|
T Consensus 127 ~~~fKiiIlDEcdsmtsda--q~aLrr~mE~-~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDA--QAALRRTMED-FSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCcceEEEEechhhhhHHH--HHHHHHHHhc-cccceEEEEEcCChhhCChHHHhhHHHh
Confidence 3455999999999997766 6667777777 66677777665543 34555555554
No 205
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=86.08 E-value=1.2 Score=31.41 Aligned_cols=38 Identities=3% Similarity=-0.083 Sum_probs=30.6
Q ss_pred cCCCCEEEEeCCch-HHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 136 SLNPPVLIFVQSKD-RAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t~~-~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|+||++-. .+...+..|...|+ ++..+.||+.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 35678999999854 67778888899999 4888999875
No 206
>PF15586 Imm47: Immunity protein 47
Probab=85.89 E-value=1 Score=29.90 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=32.9
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
...++.|+||+.|.....+..+-..+ .++|++|.|.= .-...+++++..
T Consensus 43 d~F~v~VcTP~wL~~~~~~~~~~~gr-~~LIv~~yd~~----~I~~~i~~~i~~ 91 (116)
T PF15586_consen 43 DYFQVFVCTPKWLSKNCWKPGILWGR-HMLIVEEYDYD----EIKKTIERIIES 91 (116)
T ss_pred ceEEEEEEcHHHHHHhhcCCcceecc-ceEEEecCCHH----HHHHHHHHHHHH
Confidence 34789999999999988775533333 68899887632 134446666665
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.86 E-value=1.2 Score=36.00 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=38.8
Q ss_pred CCcEEEeCcHHHHHHH----HcCCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 15 SCDILISTPLRLRLAI----RRKKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l----~~~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
+..++..|...+...+ ..+.. .+...+++++||+|.+.........+..++..+...+.+++ ++++.++.
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii-its~~~p~ 244 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV-LTSDRPPK 244 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE-EecCCCHH
Confidence 5667777766544322 11111 14567899999999985542123445555555333456655 45555543
No 208
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=85.85 E-value=4.2 Score=36.40 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=41.5
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
....|...+.+-+.+ ...+|+||-|.|.+.++.++..|...|++...+++.
T Consensus 420 t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk 472 (939)
T PRK12902 420 TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAK 472 (939)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCC
Confidence 445677777665553 247899999999999999999999999998888874
No 209
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=85.85 E-value=3.3 Score=36.36 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=42.4
Q ss_pred cCCCcEEEeCcHHHHHHH-HcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec-CcHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAI-RRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT-LPDFVEELA 90 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l-~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT-~~~~~~~~~ 90 (178)
+...+|+++|=.....-- .++.+.-.++.++|+||.|.|=+.+ .+-+..++. .+.+.+ ++++.| +-+.+.+++
T Consensus 497 ~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~--SeRy~~LM~--I~An~R-lLLTGTPLQNNL~ELi 571 (941)
T KOG0389|consen 497 KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT--SERYKHLMS--INANFR-LLLTGTPLQNNLKELI 571 (941)
T ss_pred CCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc--hHHHHHhcc--ccccce-EEeeCCcccccHHHHH
Confidence 347899999864333110 1111223456699999999996555 555666666 344444 555555 444444443
Q ss_pred H
Q 030396 91 R 91 (178)
Q Consensus 91 ~ 91 (178)
.
T Consensus 572 S 572 (941)
T KOG0389|consen 572 S 572 (941)
T ss_pred H
Confidence 3
No 210
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=85.78 E-value=2.3 Score=27.10 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=28.7
Q ss_pred CCCEEEEeCCchHHHHHHHH-----hhhCCC-ceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGE-----LAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~-----L~~~g~-~~~~lh~~~~ 173 (178)
...+|+||++-.++...+.. |...|+ ++..+.||+.
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 44688899777777777776 888899 9999999864
No 211
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=85.71 E-value=7.5 Score=33.59 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDL 172 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~ 172 (178)
-...+..+++.. ++.++||+.|-+..+.+++.+..... .....+|.-
T Consensus 467 ~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~ 514 (654)
T COG1199 467 LAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED 514 (654)
T ss_pred HHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC
Confidence 344555555555 55999999999999999999987665 344445443
No 212
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=85.64 E-value=0.75 Score=40.91 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 123 EGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 123 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
..|...+.+-+.. ...+|+||-|.|.+.++.++..|...|++.-.+++.
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk 482 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAK 482 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccc
Confidence 3566666666653 247899999999999999999999999877666553
No 213
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=85.55 E-value=3.5 Score=26.47 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=29.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..+++++|++-.++...+..|.+.|+.....-||+.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457889999999999999999999996554447653
No 214
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.25 E-value=0.87 Score=33.99 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=27.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCC-ceEEEEeecCcHH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS-IVRSLFSATLPDF 85 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~-~q~i~~SAT~~~~ 85 (178)
.+.+++++||+|.+-........+..++..+.... .+ +++|++.|+.
T Consensus 96 ~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~-li~ts~~~p~ 143 (235)
T PRK08084 96 EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR-LLITGDRPPR 143 (235)
T ss_pred hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe-EEEeCCCChH
Confidence 34578999999998543324555666666533223 35 4556666553
No 215
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=85.16 E-value=1.1 Score=29.74 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=30.7
Q ss_pred CCCCEEEEeC-CchHHHHHHHHhhhC------------CC-ceEeeecCCCc
Q 030396 137 LNPPVLIFVQ-SKDRAKELYGELAFD------------DI-RAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~-t~~~~~~l~~~L~~~------------g~-~~~~lh~~~~~ 174 (178)
...+++++|+ +-.++...+..|+.. |+ ++..+.||+..
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~ 118 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKN 118 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHh
Confidence 4567999996 888888888888874 77 79999999753
No 216
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=84.96 E-value=1.6 Score=34.20 Aligned_cols=38 Identities=5% Similarity=0.104 Sum_probs=33.4
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+.+++++||.+=.+++..+.+|.+.|+ ++..+.||+.
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~ 207 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGII 207 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHH
Confidence 3567899999999999999999999999 5889999864
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.64 E-value=4.5 Score=31.96 Aligned_cols=73 Identities=12% Similarity=0.002 Sum_probs=46.3
Q ss_pred hccCCCcEEEeCcHHHHHHHHcC----C-------CCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 11 LSKFSCDILISTPLRLRLAIRRK----K-------IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~----~-------~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
++..+..|+..|...+.+.+... . -.+.+++++|||+.............+..|+.........+ ++|
T Consensus 207 l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~t-IiT 285 (329)
T PRK06835 207 LLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKM-IIS 285 (329)
T ss_pred HHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEE
Confidence 34567889888888887766331 1 12568899999999887443323556667777633334554 555
Q ss_pred ecCcH
Q 030396 80 ATLPD 84 (178)
Q Consensus 80 AT~~~ 84 (178)
+.+++
T Consensus 286 SNl~~ 290 (329)
T PRK06835 286 TNLSL 290 (329)
T ss_pred CCCCH
Confidence 55554
No 218
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=84.63 E-value=1.5 Score=34.10 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCC-------CCceEEEEeecCcHHHHHHHHHhcc
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSN-------PSIVRSLFSATLPDFVEELARSIMH 95 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~ 95 (178)
-..-+.|||||+|+|-. | ..+.+.-.+++ .+ .+.-+|++|-+-...+...+-.+..
T Consensus 176 ~C~rslFIFDE~DKmp~-g-Lld~lkpfLdy-yp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKLPP-G-LLDVLKPFLDY-YPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred hcCCceEEechhhhcCH-h-HHHHHhhhhcc-ccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 34457999999999933 4 56666666665 33 2456788898888777665555433
No 219
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.63 E-value=4.7 Score=32.72 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=39.4
Q ss_pred EEeccccccccCCChhhHHHHHhhC----CCCCceEEEEeecCcHH--HHHHHHHhccCcEEEEE
Q 030396 44 VLDEADKLFEVGNLLKHIDPVVKAC----SNPSIVRSLFSATLPDF--VEELARSIMHDAVRVIV 102 (178)
Q Consensus 44 ViDE~d~ll~~~~~~~~i~~i~~~~----~~~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~v~~ 102 (178)
|.+|.|.++-.- ..+.+..+++.+ +..-.+++++|.|+... ++.++.....++..+..
T Consensus 80 i~g~WdtlILav-taDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISF 143 (429)
T PF10100_consen 80 IEGEWDTLILAV-TADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISF 143 (429)
T ss_pred hcccccEEEEEe-chHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEe
Confidence 678888877655 567777777773 33457899999999865 44555555555555544
No 220
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.57 E-value=7.3 Score=31.08 Aligned_cols=90 Identities=14% Similarity=0.034 Sum_probs=49.3
Q ss_pred hHhHHhHHhccCCCcEEEeCc----HHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 3 KELVRSTDLSKFSCDILISTP----LRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 3 ~~~~~q~~~l~~~~~Iii~TP----~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
+.+.+|++.-.+.-.+.+|.- ..++..++.+.-..+.-=+||+||+|...... -.-.+...++.-......+.++
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-rQtllYnlfDisqs~r~Picii 175 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-RQTLLYNLFDISQSARAPICII 175 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-hhHHHHHHHHHHhhcCCCeEEE
Confidence 456677776554445555532 23445556666566666789999999987665 4444444444322233444444
Q ss_pred eecCcHHHHHHHHHh
Q 030396 79 SATLPDFVEELARSI 93 (178)
Q Consensus 79 SAT~~~~~~~~~~~~ 93 (178)
.-|-.-++.+.+++-
T Consensus 176 g~Ttrld~lE~LEKR 190 (408)
T KOG2228|consen 176 GVTTRLDILELLEKR 190 (408)
T ss_pred EeeccccHHHHHHHH
Confidence 444443344444443
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=84.30 E-value=1 Score=34.97 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEE
Q 030396 37 LSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
--.++++||||+|.++... .-...+...+++ +.+..++-++
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~-L~NeL~ipiV 184 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKF-LGNELQIPIV 184 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHH-HhhccCCCeE
Confidence 4678999999999988754 234445556666 5555554333
No 222
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.15 E-value=10 Score=33.17 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=22.1
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
.++.++||++|-+.-+.+++.+.+.|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~ 546 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMG 546 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcC
Confidence 36889999999999999998887654
No 223
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=83.93 E-value=2.3 Score=37.05 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHH----hcCCCCEEEEeCCchHHHHHHHHhh---hCCCceEeeecC
Q 030396 122 EEGKLLALRQSFA----ESLNPPVLIFVQSKDRAKELYGELA---FDDIRAGVIHSD 171 (178)
Q Consensus 122 ~~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~---~~g~~~~~lh~~ 171 (178)
.+.|...+.+.+. ..+..++||||.++++|..+..+|. ..|+++..+.|.
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 3467777777664 3456789999999999999999987 346677777763
No 224
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=83.46 E-value=7.1 Score=35.26 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=38.1
Q ss_pred hHHhHHhccCCCcEEEeCcHHH-HHHHHcCCCCCC-------CeeEEEEeccccccc
Q 030396 5 LVRSTDLSKFSCDILISTPLRL-RLAIRRKKIDLS-------RVEYLVLDEADKLFE 53 (178)
Q Consensus 5 ~~~q~~~l~~~~~Iii~TP~~l-~~~l~~~~~~~~-------~l~~lViDE~d~ll~ 53 (178)
..+|.+.. +|+|+|||||+| .++++.+.+.++ .++++|+||||.|+-
T Consensus 175 ~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 175 LEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 34455554 599999999999 999999877766 458999999999863
No 225
>PRK08181 transposase; Validated
Probab=83.16 E-value=5.2 Score=30.68 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=41.5
Q ss_pred cCCCcEEEeCcHHHHHHHHc----CCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 13 KFSCDILISTPLRLRLAIRR----KKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~----~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
..+..+++.|...|.+.+.. +.. .+.+.+.+|+||++..-....-...+..++.... .+. -+++++.++
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~-~~~-s~IiTSN~~ 209 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARY-ERR-SILITANQP 209 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHH-hCC-CEEEEcCCC
Confidence 35667777666666655432 111 1567899999999987443313445666666522 333 456666666
Q ss_pred HH
Q 030396 84 DF 85 (178)
Q Consensus 84 ~~ 85 (178)
+.
T Consensus 210 ~~ 211 (269)
T PRK08181 210 FG 211 (269)
T ss_pred HH
Confidence 43
No 226
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=83.11 E-value=1.4 Score=28.10 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=32.5
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhCCCceE-eeecCCC
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFDDIRAG-VIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~-~lh~~~~ 173 (178)
...++++|+|.+=.+....+..|.+.|+... .+.||+.
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 3467899999999999999999999999887 7777764
No 227
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=82.59 E-value=3.7 Score=31.80 Aligned_cols=82 Identities=7% Similarity=0.082 Sum_probs=52.1
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHH----HHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC-ce
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQ----SFAESLNPPVLIFVQSKDRAKELYGELAFDDI-RA 165 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~----ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~ 165 (178)
...+.+|-.+.++..+.---.+=++--.+......+..+.. ..+....++++-||.-=-+||+.+.+|.+.|+ .|
T Consensus 121 n~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eV 200 (308)
T COG1054 121 NELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCEKASAWMKENGFKEV 200 (308)
T ss_pred HHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeehhhHHHHHHhcchhh
Confidence 44556665555543332222222322223333344444444 34455577999999999999999999999999 88
Q ss_pred EeeecCC
Q 030396 166 GVIHSDL 172 (178)
Q Consensus 166 ~~lh~~~ 172 (178)
+-++||.
T Consensus 201 yhL~GGI 207 (308)
T COG1054 201 YHLEGGI 207 (308)
T ss_pred hcccchH
Confidence 8899884
No 228
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=82.58 E-value=1.3 Score=39.05 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=30.4
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcC--CCCCCCeeEEEEeccccccc
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~--~~~~~~l~~lViDE~d~ll~ 53 (178)
+.+.+.++||++-=.-|.+-.-++ .+++++ ..+||||||.+-+
T Consensus 217 R~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 217 RELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIED 261 (945)
T ss_pred hhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHHH
Confidence 345678999998555555554443 467776 7899999999853
No 229
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=82.39 E-value=2.4 Score=37.73 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+-+++||||+|.|-..+ .+.+.+++.. .+....+|+.+ |-+.
T Consensus 119 ~~~KV~IIDEad~lt~~a--~NaLLK~LEE-pP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG--FNALLKIVEE-PPEHLKFIFAT-TEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH--HHHHHHHHhC-CCCCeEEEEEe-CChh
Confidence 566899999999996655 4455555655 45555555543 5443
No 230
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.30 E-value=1.6 Score=37.63 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCC--CCCeeEEEEecccccccc
Q 030396 14 FSCDILISTPLRLRLAIRRKKID--LSRVEYLVLDEADKLFEV 54 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~--~~~l~~lViDE~d~ll~~ 54 (178)
..++++|+++..+..-....... +-.-+.+|+||||.+-+.
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d~ 235 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPDI 235 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchHH
Confidence 57999999999888654433222 335579999999999663
No 231
>PRK08116 hypothetical protein; Validated
Probab=81.99 E-value=7.4 Score=29.74 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=40.1
Q ss_pred CCcEEEeCcHHHHHHHHcC----C-------C-CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 15 SCDILISTPLRLRLAIRRK----K-------I-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~----~-------~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
+..+++.|...+.+.+... . + .+.+.++||||+++.--........+..|+.........+|+.|-.-
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5566666665555554321 0 1 16788999999996532221135556667766334455665555544
Q ss_pred cHHH
Q 030396 83 PDFV 86 (178)
Q Consensus 83 ~~~~ 86 (178)
|.++
T Consensus 222 ~~eL 225 (268)
T PRK08116 222 LEEL 225 (268)
T ss_pred HHHH
Confidence 4443
No 232
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=81.78 E-value=1.3 Score=39.40 Aligned_cols=39 Identities=28% Similarity=0.529 Sum_probs=29.0
Q ss_pred CCCcEEEeCcHHH-----HHHHHc--CCCCCCCeeEEEEecccccc
Q 030396 14 FSCDILISTPLRL-----RLAIRR--KKIDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 14 ~~~~Iii~TP~~l-----~~~l~~--~~~~~~~l~~lViDE~d~ll 52 (178)
=.|||+.||+..+ .+.+.. +..-...+.+.|+||+|.++
T Consensus 173 Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 173 YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 4799999999997 333332 22335788899999999976
No 233
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=81.71 E-value=4.3 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCCCEEEEeCCchH---------HHHHHHHhhh---CCCceEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDR---------AKELYGELAF---DDIRAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~---------~~~l~~~L~~---~g~~~~~lh~~~~~ 174 (178)
...++||||.+-.. +..++..|.+ .+.++..+.||+..
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~ 123 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQ 123 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHH
Confidence 56789999987765 8888899987 56689999999753
No 234
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=81.49 E-value=4.9 Score=36.00 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=25.3
Q ss_pred CcEEEeCcHHH-HHHHHcCC------CCCCCeeEEEEecccccc
Q 030396 16 CDILISTPLRL-RLAIRRKK------IDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 16 ~~Iii~TP~~l-~~~l~~~~------~~~~~l~~lViDE~d~ll 52 (178)
++|++||..-+ .++|+.+. .-...+.+.|+||+|.++
T Consensus 172 ~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 172 ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 88999998775 24454331 124778888888888865
No 235
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=81.45 E-value=2 Score=32.46 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=27.9
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
..+-+.+|+||||.|-+.. ...+++.+.. ..+..++.+.
T Consensus 111 ~grhKIiILDEADSMT~gA--QQAlRRtMEi-yS~ttRFala 149 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAGA--QQALRRTMEI-YSNTTRFALA 149 (333)
T ss_pred CCceeEEEeeccchhhhHH--HHHHHHHHHH-Hcccchhhhh
Confidence 4888999999999996543 6677777776 5555554443
No 236
>PF13173 AAA_14: AAA domain
Probab=81.12 E-value=3.4 Score=27.51 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=26.9
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.-.+++|||++.+- + +...+..+.+. . .+.++++.+....
T Consensus 61 ~~~~i~iDEiq~~~--~-~~~~lk~l~d~-~-~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--D-WEDALKFLVDN-G-PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhc--c-HHHHHHHHHHh-c-cCceEEEEccchH
Confidence 45789999999993 3 56777777776 3 4567665544433
No 237
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=81.08 E-value=3.1 Score=31.94 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
..+++++||++=.+|-.++..|...|+ ++..+.|++.
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 356899999999999999999999999 5889999864
No 238
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=80.80 E-value=18 Score=31.77 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh-CCCceEeeecC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF-DDIRAGVIHSD 171 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~-~g~~~~~lh~~ 171 (178)
..+.++||++|.+..+.+++.|.. .+++ ...+|.
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~ 567 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD 567 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC
Confidence 355699999999999999999864 3433 333453
No 239
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=80.78 E-value=33 Score=30.49 Aligned_cols=76 Identities=18% Similarity=0.041 Sum_probs=43.7
Q ss_pred EEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc-HHHHHHHHH-hcc
Q 030396 18 ILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP-DFVEELARS-IMH 95 (178)
Q Consensus 18 Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~-~~~~~~~~~-~~~ 95 (178)
|++-+=+.+.+.++. +....+.++|+||.|.+=+. ...+...+.. +...++ |++|.|.= +++.+.... -+-
T Consensus 357 vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~---~s~~~kaL~~-l~t~rR-VLLSGTp~QNdl~EyFnlL~fv 429 (776)
T KOG0390|consen 357 VLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS---DSLTLKALSS-LKTPRR-VLLTGTPIQNDLKEYFNLLDFV 429 (776)
T ss_pred EEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch---hhHHHHHHHh-cCCCce-EEeeCCcccccHHHHHHHHhhc
Confidence 344444444444432 34567889999999999442 4666666776 554555 66777754 444443333 233
Q ss_pred CcEEE
Q 030396 96 DAVRV 100 (178)
Q Consensus 96 ~~~~v 100 (178)
+|..+
T Consensus 430 rP~~L 434 (776)
T KOG0390|consen 430 RPGFL 434 (776)
T ss_pred Chhhc
Confidence 55444
No 240
>PRK05580 primosome assembly protein PriA; Validated
Probab=80.56 E-value=6.8 Score=34.19 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=45.2
Q ss_pred EEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhh-CCCceEeeecCCCcccc
Q 030396 116 LVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAF-DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~-~g~~~~~lh~~~~~~~R 177 (178)
.+.......|.......+.. ....+++|.++|++-+..+.+.|++ .|.++..+||+++..+|
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r 230 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGER 230 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHH
Confidence 33333445566555544432 1256899999999999999999976 48899999999987665
No 241
>PLN03025 replication factor C subunit; Provisional
Probab=80.43 E-value=3 Score=32.63 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=26.7
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
...+.+|+||+|.|-... ...+.+++.. .+....+++ +++.
T Consensus 98 ~~~kviiiDE~d~lt~~a--q~aL~~~lE~-~~~~t~~il-~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA--QQALRRTMEI-YSNTTRFAL-ACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH--HHHHHHHHhc-ccCCceEEE-EeCC
Confidence 346899999999996554 5556666665 455555444 4443
No 242
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.43 E-value=2.7 Score=36.37 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+-+.+||||+|.|-... .+.+.+++.. .+.+..+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~A--aNALLKTLEE-PP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA--FNAMLKTLEE-PPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHH--HHHHHHhhcc-CCCCceEEEEe
Confidence 3567899999999996544 3444445554 44556555554
No 243
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.02 E-value=18 Score=28.80 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=82.7
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCC-CC--CCCeeEEEEeccccccccCCChhhHHHHHhhC----CCCCceEEEEeecCc
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKK-ID--LSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC----SNPSIVRSLFSATLP 83 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~-~~--~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~----~~~~~q~i~~SAT~~ 83 (178)
.++.++.+=+---|..+..++.+. +| .+++.- +.||.+.++-.- ..+.+..+++.+ ++.-.-++++|+|+.
T Consensus 47 ala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~-~~~dwqtlilav-~aDaY~dvlqqi~~e~L~~vk~viLiSptfG 124 (431)
T COG4408 47 ALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQ-AVGDWQTLILAV-PADAYYDVLQQIPWEALPQVKSVILISPTFG 124 (431)
T ss_pred HHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHH-hhchhheEEEEe-ecHHHHHHHhcCCHhHhccccEEEEeccccc
Confidence 334445555554555555555432 22 222222 567777765443 456666666663 344567899999998
Q ss_pred HH--HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEe----CCchHHHHHHHH
Q 030396 84 DF--VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFV----QSKDRAKELYGE 157 (178)
Q Consensus 84 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~----~t~~~~~~l~~~ 157 (178)
.. +......+..+..++....--... .++. .+.....+-.-+++. ||. .+...|+.+...
T Consensus 125 sn~lv~~~mnk~~~daeViS~SsY~~dT-----k~id---~~~p~~alTkavKkr------iYlgs~~~ns~~~e~l~~v 190 (431)
T COG4408 125 SNLLVQNLMNKAGRDAEVISLSSYYADT-----KYID---AEQPNRALTKAVKKR------IYLGSQHGNSGSAEMLTAV 190 (431)
T ss_pred ccHHHHHHHhhhCCCceEEEeehhcccc-----eeec---ccCcchHHHHHHhHh------eeeccCCCCChHHHHHHHH
Confidence 65 556667777676666554322221 1221 122233333333322 222 345678888888
Q ss_pred hhhCCCceEeeecCCCccc
Q 030396 158 LAFDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 158 L~~~g~~~~~lh~~~~~~~ 176 (178)
|...|+.+....+-+..+.
T Consensus 191 ~aq~~I~v~~~esp~~AEt 209 (431)
T COG4408 191 LAQHGIDVEPCESPLAAET 209 (431)
T ss_pred HHhcCCceEEcCChhhhhh
Confidence 9888888777665444433
No 244
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=79.70 E-value=11 Score=34.24 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
..++++||++|.+..+.+++.|...
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~ 775 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNE 775 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhc
Confidence 3679999999999999999999754
No 245
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=79.14 E-value=23 Score=27.00 Aligned_cols=112 Identities=11% Similarity=0.121 Sum_probs=64.5
Q ss_pred ccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHH-----HHHHHhccCcEEEEEcCC--ccccCCceEEEEE
Q 030396 47 EADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVE-----ELARSIMHDAVRVIVGRK--NTASESIKQKLVF 118 (178)
Q Consensus 47 E~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~-----~~~~~~~~~~~~v~~~~~--~~~~~~i~~~~~~ 118 (178)
+-+..++.| ........+.+. ..+.-+ ++|--...+-. ++....+.|...+...+. ......+..-+.-
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~-vg~~G~--v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LD 170 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARA-VGPEGH--VTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLD 170 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHh-hCCCce--EEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEc
Confidence 444555555 344444445554 444455 33334433322 222223445544444221 2223355555666
Q ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 119 AGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.++.-+-+..+-+.++.. ..+++|+++..+++++.+.|++.|+
T Consensus 171 mp~PW~~le~~~~~Lkpg--g~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 171 LPDPWNVLEHVSDALKPG--GVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred CCChHHHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 655555666666666655 8999999999999999999999876
No 246
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=79.08 E-value=5.6 Score=27.95 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
....+++|+||+=..+..+ --.+++..+++. -+...-+|+.+-..|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCc
Confidence 4567899999999998877 335566667776 66677777777777877666443
No 247
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=78.71 E-value=3.6 Score=30.38 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
..+.+.+|+||.=.=++-. ....+..++.. ++..-..++||...-++++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~-~~r~~~dfi~q-~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIR-TRRKFHDFIKQ-LKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHH-HHHHHHHHHHH-hhcCCcEEEEecccHHHHHHhhhe
Confidence 5788999999987766665 67778888888 676677788888888888877665
No 248
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.45 E-value=3.3 Score=33.03 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=32.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~~ 174 (178)
..+++++||++-.++...+..|...|++ +..+.||+..
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 3567999999999999999999999996 7889999853
No 249
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=78.45 E-value=6.7 Score=30.77 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCEEEEeC-CchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQ-SKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~-t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.++++|||. +-.++...+..|...|+++..+.||+.
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~ 110 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYK 110 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHH
Confidence 345999995 667899999999999999999999863
No 250
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.20 E-value=1.4 Score=38.54 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=27.6
Q ss_pred cCCCcEEEeCcHHHHHHHHcC--CCCCCCeeEEEEeccccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~--~~~~~~l~~lViDE~d~ll~ 53 (178)
...+||||+.=.-|++---++ ..++++ ..+||||||.+.+
T Consensus 193 ~~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 193 LPFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred hhcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 357899999776665433222 234555 7999999999964
No 251
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.17 E-value=2.5 Score=38.08 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=25.9
Q ss_pred EEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 42 YLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 42 ~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
|||+||+|.-++.. .+-.|.+++-+++.|+|+.|
T Consensus 1076 FfvlDEiDAALDnt----Ni~kvasyIr~~~~Q~IvIS 1109 (1141)
T KOG0018|consen 1076 FFVLDEIDAALDNT----NIGKVASYIRSSNFQFIVIS 1109 (1141)
T ss_pred ceehhhHHHHhhhc----cHHHHHHHHhcCCceEEEEe
Confidence 99999999998875 35555555445789999875
No 252
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.71 E-value=6 Score=33.22 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhC-CCceEeeecCCCcccc
Q 030396 123 EGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFD-DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 123 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~-g~~~~~lh~~~~~~~R 177 (178)
..|......++.. ...++++|-++++.-+..+++.|++. |.++..+||+++..+|
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEK 65 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 3455555444432 22568999999999999999999764 7889999999988765
No 253
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=77.57 E-value=3 Score=36.75 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.+-+++||||+|.|-... .+.+.+++.. .+....+|+ .+|-+
T Consensus 118 gr~KVIIIDEah~LT~~A--~NALLKtLEE-PP~~v~FIL-aTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA--FNAMLKTLEE-PPPHVKFIL-ATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHH--HHHHHHHHHh-cCCCeEEEE-EECCh
Confidence 456899999999995544 3444445555 444444444 44444
No 254
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=77.54 E-value=3.8 Score=31.75 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..-+.+|+||+|.+-... ....+..++.. .+...++++.+
T Consensus 99 ~~~~vliiDe~d~l~~~~-~~~~L~~~le~-~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLAD-AQRHLRSFMEA-YSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHH-HHHHHHHHHHh-cCCCceEEEEc
Confidence 356799999999983332 35566677776 55666655543
No 255
>PRK14873 primosome assembly protein PriA; Provisional
Probab=77.13 E-value=4.8 Score=35.01 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhC-C-CceEeeecCCCccccC
Q 030396 123 EGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFD-D-IRAGVIHSDLSQTQVF 178 (178)
Q Consensus 123 ~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~-g-~~~~~lh~~~~~~~R~ 178 (178)
+.|.+..+.++.+. ..+++||-++.+..+..+...|+.. | ..++.+||+++..+|+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRY 230 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHH
Confidence 46777777777642 3678999999999999999999754 4 6899999999998873
No 256
>PF12846 AAA_10: AAA-like domain
Probab=76.91 E-value=6.4 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.0
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
-..-.++++||||.++........+.++++.
T Consensus 218 ~~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~ 248 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNPSGAEFLDELLRE 248 (304)
T ss_pred CCceEEEEeCCccccccccchhhhhhHHHHH
Confidence 4566788999999999874466677777776
No 257
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=76.81 E-value=6.9 Score=35.63 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=38.1
Q ss_pred CcEEEeCcHHHHHHHHcC-CC-CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 16 CDILISTPLRLRLAIRRK-KI-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~~-~~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
-.|+|+|-..+....... .. .-.+==.||+||||+--. | ..-..+ +. .-++...+.||.|-
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G---~~~~~~-~~-~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-G---ELAKLL-KK-ALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc-c---HHHHHH-HH-HhccceEEEeeCCc
Confidence 389999999999888664 11 122223669999999722 2 222222 33 22347788888774
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.55 E-value=8.6 Score=28.26 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=27.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCC-ceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS-IVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~-~q~i~~SAT~~~ 84 (178)
...+.+|+||+|.+-.. ....+..+++. .... ..+++++++.++
T Consensus 89 ~~~~~liiDdi~~l~~~--~~~~L~~~~~~-~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 89 PEAELYAVDDVERLDDA--QQIALFNLFNR-VRAHGQGALLVAGPAAP 133 (227)
T ss_pred ccCCEEEEeChhhcCch--HHHHHHHHHHH-HHHcCCcEEEEeCCCCH
Confidence 34578999999987433 35556566655 3323 334677777654
No 259
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=76.55 E-value=12 Score=30.49 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=38.8
Q ss_pred CCcEEEeCcHH-------HHHHHH---cCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 15 SCDILISTPLR-------LRLAIR---RKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 15 ~~~Iii~TP~~-------l~~~l~---~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
-||+.+.+|+. +.++++ ... ...+-+.++|||+|.|-... ...+...+.. .+.... +++.||-+.
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p-~~~~~kViiIDead~m~~~a--anaLLk~LEe-p~~~~~-fIL~a~~~~ 158 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRP-STGRWRIVVIEDADRLTERA--ANALLKAVEE-PPPRTV-WLLCAPSPE 158 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCc-ccCCcEEEEEechhhcCHHH--HHHHHHHhhc-CCCCCe-EEEEECChH
Confidence 47887777742 233332 222 23567899999999995544 4455555555 444444 444455454
Q ss_pred HHH
Q 030396 85 FVE 87 (178)
Q Consensus 85 ~~~ 87 (178)
.+.
T Consensus 159 ~ll 161 (394)
T PRK07940 159 DVL 161 (394)
T ss_pred HCh
Confidence 433
No 260
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=76.39 E-value=9.8 Score=24.59 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=25.8
Q ss_pred CCCCEEEEeCCc-----hHHHHHHHHhhhCCC---ceEeeecCCC
Q 030396 137 LNPPVLIFVQSK-----DRAKELYGELAFDDI---RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~-----~~~~~l~~~L~~~g~---~~~~lh~~~~ 173 (178)
...+++++|.+. ..+.++...|.+.|+ ++..+.||+.
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 356789999752 235566666777786 6788888875
No 261
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=76.31 E-value=4.8 Score=35.33 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=50.8
Q ss_pred EEEEcCChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhC-CCceEeeecCCCccccC
Q 030396 115 KLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFD-DIRAGVIHSDLSQTQVF 178 (178)
Q Consensus 115 ~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~-g~~~~~lh~~~~~~~R~ 178 (178)
+.+.-...+.|.+..++++.+. ..+++||-++-++....+.+.|+.. |.++..+||+++..+|.
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~ 286 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERY 286 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHH
Confidence 3444445567888888888742 3578999999999999999999654 89999999999998873
No 262
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=75.67 E-value=8.5 Score=29.38 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=86.5
Q ss_pred hHhHHhHHhccCCCcEEEeCcHHHHHHHHcCC--C-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceE
Q 030396 3 KELVRSTDLSKFSCDILISTPLRLRLAIRRKK--I-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVR 75 (178)
Q Consensus 3 ~~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~--~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~ 75 (178)
+++++++...-+..+|.----.++.++-+.+. + -+....++|+||--.=++.= -.+.+...+.. +...--+
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV-N~elLk~~I~~-lk~~Gat 182 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV-NVELLKDAIFE-LKEEGAT 182 (300)
T ss_pred HHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh-hHHHHHHHHHH-HHhcCCE
Confidence 45566666555566654443334444433221 1 26788999999987666654 56677776666 6667778
Q ss_pred EEEeecCcHHHHHHHHHhcc--CcEEEEEcCCccccC--CceEEEEEcCChhhHHHHHHHHHHhc--CCCCEEEEeCCch
Q 030396 76 SLFSATLPDFVEELARSIMH--DAVRVIVGRKNTASE--SIKQKLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKD 149 (178)
Q Consensus 76 i~~SAT~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~--~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~ 149 (178)
++||...-.++++++...+- .-..|..+....... +-+..++.......-...+-.+++-. +.+...|--.+..
T Consensus 183 IifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~~~~~~G~~~i~ie~e~ 262 (300)
T COG4152 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWRIQIENET 262 (300)
T ss_pred EEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEeccCchHHHhcCCCceeeeeccCCceEeecccch
Confidence 99999988899999888643 223333322211111 11222322211112222222232211 1111223356667
Q ss_pred HHHHHHHHhhhCCC
Q 030396 150 RAKELYGELAFDDI 163 (178)
Q Consensus 150 ~~~~l~~~L~~~g~ 163 (178)
.++.+.+.+...|+
T Consensus 263 ~a~~ifq~~a~~g~ 276 (300)
T COG4152 263 VAREIFQEVARDGY 276 (300)
T ss_pred HHHHHHHHHhccce
Confidence 78888888888775
No 263
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=75.30 E-value=2.8 Score=36.26 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=22.5
Q ss_pred EEeCcHHHHHHH-HcC--CCCCCCeeEEEEeccccccc
Q 030396 19 LISTPLRLRLAI-RRK--KIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 19 ii~TP~~l~~~l-~~~--~~~~~~l~~lViDE~d~ll~ 53 (178)
+|.=|..++-.= .++ .+++++ +.+|+||||.+++
T Consensus 326 lV~LPYQ~LL~~stR~slgI~Lkd-sIvIiDEAHNlid 362 (821)
T KOG1133|consen 326 LVTLPYQLLLHESTRKSLGISLKD-SIVIIDEAHNLID 362 (821)
T ss_pred EEeccHHHHHhHHHHHhcCccccc-cEEEEechhHHHH
Confidence 456687765332 222 355665 7899999999975
No 264
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=75.17 E-value=9.2 Score=34.95 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 121 SEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
....|...+.+-+... ..+|+||-|.|.+..+.++..|...|++.-.+++.
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK 661 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAK 661 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhcc
Confidence 4456777777666533 47899999999999999999999999987666553
No 265
>PLN02955 8-amino-7-oxononanoate synthase
Probab=75.15 E-value=3.3 Score=34.43 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=23.7
Q ss_pred EEEEeCCchHHHHHHHHhhhCCCceEeee
Q 030396 141 VLIFVQSKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
.-|++.+...+..+++.|.+.|+-+..+.
T Consensus 396 ~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~ 424 (476)
T PLN02955 396 ISLVVGNQEKALKASRYLLKSGFHVMAIR 424 (476)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEEC
Confidence 33677999999999999999998766554
No 266
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=75.07 E-value=4.3 Score=28.93 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
...-+.+|+||+|.+-... .+.+...+.. .+...-+++.
T Consensus 94 ~~~~kviiide~~~l~~~~--~~~Ll~~le~-~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA--ANALLKTLEE-PPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH--HHHHHHHhcC-CCCCeEEEEE
Confidence 4667899999999995544 3444444444 3444444443
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=75.05 E-value=12 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=24.8
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+.+++||+|.+.... ...+..++.. .+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~--~~~L~~~le~-~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA--QQALRRTMEM-YSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH--HHHHHHHHhc-CCCCCeEEEEe
Confidence 45689999999995533 4556666666 45556655543
No 268
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=75.04 E-value=3.3 Score=32.61 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSL 77 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~ 77 (178)
...+++|+||||.|-.+. ...++++... ...+..+..
T Consensus 130 ~~fKlvILDEADaMT~~A--QnALRRviek-~t~n~rF~i 166 (360)
T KOG0990|consen 130 AAFKLVILDEADAMTRDA--QNALRRVIEK-YTANTRFAT 166 (360)
T ss_pred CceeEEEecchhHhhHHH--HHHHHHHHHH-hccceEEEE
Confidence 368999999999997665 6667777666 555555443
No 269
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=74.85 E-value=5.1 Score=31.92 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCCCEEEEeC-CchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 137 LNPPVLIFVQ-SKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~-t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+..+++|||. +-.++..++..|...|+++..+.||+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~ 124 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYK 124 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHH
Confidence 4678999995 567788899999999999999999864
No 270
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=74.61 E-value=13 Score=26.49 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
-...+++|+||+-..++.+ --.+++..+++. -|...-+|+..-..|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQE-RPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhCc
Confidence 3566799999999998887 223456666676 66777777777777776666543
No 271
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.44 E-value=3.2 Score=38.51 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=47.8
Q ss_pred ccCCCcEEEeCcHHHHHHH---HcCC------------CCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEE
Q 030396 12 SKFSCDILISTPLRLRLAI---RRKK------------IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS 76 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l---~~~~------------~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i 76 (178)
+..|..|.+.-||.=...+ .+|. +.+..--+.|+||+|..++.. ...-+-.++.. ...+.|+|
T Consensus 1046 l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~-Nv~r~~~~i~e-~s~~sQFI 1123 (1163)
T COG1196 1046 LTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDA-NVERVARLIKE-MSKETQFI 1123 (1163)
T ss_pred hhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHH-HHHHHHHHHHH-hCcCCeEE
Confidence 3457888899998754422 2221 124555689999999999987 66667777777 67899999
Q ss_pred EEeec
Q 030396 77 LFSAT 81 (178)
Q Consensus 77 ~~SAT 81 (178)
+.|--
T Consensus 1124 vIThr 1128 (1163)
T COG1196 1124 VITHR 1128 (1163)
T ss_pred EEEcC
Confidence 97543
No 272
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.11 E-value=4.2 Score=34.17 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.+-+.+||||+|.|-... .+.+.+++.. .+....+++.
T Consensus 118 ~~~kV~iIDE~~~ls~~a--~naLLk~LEe-pp~~~~fIla 155 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS--FNALLKTLEE-PPSHVKFILA 155 (509)
T ss_pred CCcEEEEEEChHhcCHHH--HHHHHHHHhc-cCCCeEEEEE
Confidence 456899999999996544 3445556665 5555555554
No 273
>PRK04296 thymidine kinase; Provisional
Probab=74.09 E-value=7.6 Score=27.90 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=22.3
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
...+.+|+||++.+- .+++..+++. +...-..+++++--
T Consensus 77 ~~~dvviIDEaq~l~-----~~~v~~l~~~-l~~~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEAQFLD-----KEQVVQLAEV-LDDLGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEccccCC-----HHHHHHHHHH-HHHcCCeEEEEecC
Confidence 466899999996541 2335566666 33333444444443
No 274
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=74.07 E-value=15 Score=28.89 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=27.3
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
+.-+.+|+|+||.|-..+ ...+.+++.. .+ +..+++++.
T Consensus 123 ~~~kVvII~~ae~m~~~a--aNaLLK~LEE-Pp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA--ANALLKTLEE-PG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHHH--HHHHHHHHhC-CC-CCeEEEEEC
Confidence 567999999999996655 5666666766 55 565555443
No 275
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=74.07 E-value=8.6 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHHHHhc---CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 127 LALRQSFAES---LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 127 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
+.+..++.+. ..+++++||++-.+|-..+-.|...|++ +..+.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 3445555432 3568999999988888888899999994 889998864
No 276
>PF13245 AAA_19: Part of AAA domain
Probab=74.02 E-value=9.6 Score=23.03 Aligned_cols=52 Identities=29% Similarity=0.260 Sum_probs=35.5
Q ss_pred EcCChhhHHHHHHHHHHhc------CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeec
Q 030396 118 FAGSEEGKLLALRQSFAES------LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHS 170 (178)
Q Consensus 118 ~~~~~~~k~~~l~~ll~~~------~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~ 170 (178)
.-++...|-..+...+... ..+++++.+.|+.-++.+.+.| ..|.. +.-+|+
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 4445556665555554432 2678999999999999999999 44444 666665
No 277
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=73.99 E-value=9.4 Score=31.14 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=57.1
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHH----HHcCCC-----CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCce
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLA----IRRKKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV 74 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~----l~~~~~-----~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q 74 (178)
.+..+......++.++-.|.+.+..- ++.+.. .. +++.+++|.++.+.......+.+-.++..+.....|
T Consensus 132 Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kq 210 (408)
T COG0593 132 AIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQ 210 (408)
T ss_pred HHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCE
Confidence 34445555555678999999886532 222221 14 789999999999976644678888888885556668
Q ss_pred EEEEeecCcHHHH
Q 030396 75 RSLFSATLPDFVE 87 (178)
Q Consensus 75 ~i~~SAT~~~~~~ 87 (178)
+++.|...|.++.
T Consensus 211 Ivltsdr~P~~l~ 223 (408)
T COG0593 211 IVLTSDRPPKELN 223 (408)
T ss_pred EEEEcCCCchhhc
Confidence 8888877776544
No 278
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=73.98 E-value=12 Score=30.84 Aligned_cols=40 Identities=28% Similarity=0.177 Sum_probs=25.2
Q ss_pred CCCcEEEeCcHH----------HHHHHHcCCCCCCCeeEEEEeccccccc
Q 030396 14 FSCDILISTPLR----------LRLAIRRKKIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 14 ~~~~Iii~TP~~----------l~~~l~~~~~~~~~l~~lViDE~d~ll~ 53 (178)
..|.|+|||||. |.++|.-..-.+.=+-+||=|+|=.+..
T Consensus 124 ~~p~vlIGTPGIGKS~~~GS~LLyqLLHy~~~~L~vVaYfv~~~aYif~k 173 (439)
T PF07999_consen 124 PRPFVLIGTPGIGKSFGTGSYLLYQLLHYDAEKLPVVAYFVGGEAYIFHK 173 (439)
T ss_pred CCceEEEecCCcCccccchhhhhhhhhcCChhhccEEEEEEeceEEEEEe
Confidence 457899999996 2344444444466677777776555433
No 279
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=73.97 E-value=5.6 Score=30.70 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...+.+++||||.|-.+. ...+...+.. .+.+..+++. +.-+.
T Consensus 108 ~~~kviiidead~mt~~A--~nallk~lEe-p~~~~~~il~-~n~~~ 150 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA--ANALLKTLEE-PPKNTRFILI-TNDPS 150 (325)
T ss_pred CCceEEEeCcHHHHhHHH--HHHHHHHhcc-CCCCeEEEEE-cCChh
Confidence 778999999999997655 6666666665 4555554444 44443
No 280
>PRK04132 replication factor C small subunit; Provisional
Probab=73.75 E-value=10 Score=34.04 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=27.2
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
+-+.+|+||||.|-..+ ...+.+++.. .+.+..+++ .++-+
T Consensus 630 ~~KVvIIDEaD~Lt~~A--QnALLk~lEe-p~~~~~FIL-i~N~~ 670 (846)
T PRK04132 630 SFKIIFLDEADALTQDA--QQALRRTMEM-FSSNVRFIL-SCNYS 670 (846)
T ss_pred CCEEEEEECcccCCHHH--HHHHHHHhhC-CCCCeEEEE-EeCCh
Confidence 46899999999996544 6667777776 445555444 34433
No 281
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.72 E-value=4.3 Score=33.81 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=18.0
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
++-+.+||||+|.|-... .+.+..++..
T Consensus 120 g~~KV~IIDEah~Ls~~A--~NALLKtLEE 147 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS--FNALLKTLEE 147 (484)
T ss_pred CCCEEEEEechhhcCHHH--HHHHHHHhhc
Confidence 345799999999995544 3334444443
No 282
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.08 E-value=2.9 Score=37.52 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=45.4
Q ss_pred HhHHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 4 ELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 4 ~~~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
.|++.+.-|++|-+=+|+=. -++.++. ++.--+-|+||+|.-++.. +-..|=++++. .-++.|+|++|-
T Consensus 1075 iWKeSL~ELSGGQRSLVALs-LIlamL~-----fkPAPlYILDEVDAALDLS-HTQNIG~mIkt-hF~~sQFIVVSL 1143 (1174)
T KOG0933|consen 1075 IWKESLSELSGGQRSLVALS-LILAMLK-----FKPAPLYILDEVDAALDLS-HTQNIGRMIKT-HFTHSQFIVVSL 1143 (1174)
T ss_pred cHHHHHHHhcCchHHHHHHH-HHHHHHc-----CCCCceeehhhhHHhhcch-hhhhHHHHHHh-hCCCCeEEEEEc
Confidence 35566666665544443322 1223333 3444477999999999988 77778887777 667899999873
No 283
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=73.00 E-value=4.4 Score=32.30 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=27.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
+.-+.+||||||.|-... .+.+..++.. .+.+..++++|
T Consensus 140 g~~rVviIDeAd~l~~~a--anaLLk~LEE-pp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA--ANAILKTLEE-PPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH--HHHHHHHHhc-CCCCceEEEEE
Confidence 466899999999996554 5566666776 55566656654
No 284
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=72.97 E-value=4.4 Score=29.34 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=25.3
Q ss_pred eEEEEecccccc-ccC---CChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 41 EYLVLDEADKLF-EVG---NLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 41 ~~lViDE~d~ll-~~~---~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
-.+|+||+|.+. ... .+...+..+++.........++++++-.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 689999999998 211 3555666666663334444555666654
No 285
>PRK12377 putative replication protein; Provisional
Probab=72.23 E-value=6.9 Score=29.59 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=38.8
Q ss_pred cCCCcEEEeCcHHHHHHHHc----CC-----C-CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 13 KFSCDILISTPLRLRLAIRR----KK-----I-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~----~~-----~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
.++..+++.|-..+.+.+.. +. + .+.++++||+||++..-......+.+..|+..-......+++.|-
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34556665555556655432 11 1 268899999999976533221355666676663444566655543
No 286
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=72.15 E-value=23 Score=22.75 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=23.3
Q ss_pred CCCCEEEEeC-CchHHHHHHHHhhh--------CCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQ-SKDRAKELYGELAF--------DDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~-t~~~~~~l~~~L~~--------~g~-~~~~lh~~~~ 173 (178)
...++++||+ +-..+...+..|.+ .|+ ++..+.||+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 3567899997 43444444444322 365 7899999875
No 287
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=72.06 E-value=19 Score=26.21 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=38.3
Q ss_pred CCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
-...+++|+||+=..++.| --.+++..+++. -|...-+|+..-..|+++.+.+..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCch
Confidence 3566799999999999888 234556666666 566667777766777766665443
No 288
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=71.98 E-value=12 Score=29.05 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=38.4
Q ss_pred CCcEEEeCcH-------HHHHHHHc--CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 15 SCDILISTPL-------RLRLAIRR--KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 15 ~~~Iii~TP~-------~l~~~l~~--~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
-||+.+-.|+ .+.++... ..-.-+.-+.+|||+||.|-... .+.+.+.+.. .+.+.-++++|..
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A--aNaLLKtLEE-Pp~~t~~iL~t~~ 143 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA--ANSLLKVIEE-PQSEIYIFLLTND 143 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH--HHHHHHHhcC-CCCCeEEEEEECC
Confidence 4899888885 23333322 11123566899999999996655 5555555555 5555555555433
No 289
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=71.69 E-value=7.9 Score=31.13 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc--eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR--AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~--~~~lh~~~~ 173 (178)
+..+++++|.+=.++...+..|++.|+. +..+.||+.
T Consensus 331 ~~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 3448999999999999999999999996 688999875
No 290
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.57 E-value=5.7 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...++++||++-.++...+..|...|+ ++..+.||+.
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 93 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFS 93 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHH
Confidence 357899999998888889999999999 5888898874
No 291
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=71.44 E-value=7.6 Score=34.65 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHh-----------cCCCCEEEEeCCchHHHHHHHHhhh
Q 030396 122 EEGKLLALRQSFAE-----------SLNPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 122 ~~~k~~~l~~ll~~-----------~~~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
...|-..|.++++. .+.+++||||+...+|..|.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45677777777742 2356799999999999999999965
No 292
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=71.19 E-value=6.4 Score=22.91 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=20.7
Q ss_pred EEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 141 VLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
.+..+++.-.|+.+...|.+.|+++......+
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 57788999999999999999999888765544
No 293
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=71.16 E-value=26 Score=30.29 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=49.8
Q ss_pred EEEEeecC--cHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCCh---hhHHHHHHHHHHhcCCCCEEEEeCCch
Q 030396 75 RSLFSATL--PDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSE---EGKLLALRQSFAESLNPPVLIFVQSKD 149 (178)
Q Consensus 75 ~i~~SAT~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~t~~ 149 (178)
.+.++++. +..+.++.+.++++. ....+....+-+-.++..... -.+......-+++.......|-|.|..
T Consensus 591 ~v~l~~syrSt~eI~efan~~l~d~----~~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~ 666 (747)
T COG3973 591 YVGLIASYRSTAEIDEFANSLLPDR----FRIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDH 666 (747)
T ss_pred hhhhhhhhcChHHHHHHHHHhccCC----CccchhhcCCCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHH
Confidence 33444444 235667777777741 111222222222222222222 256666777777777889999999999
Q ss_pred HHHHHHHHhhhC
Q 030396 150 RAKELYGELAFD 161 (178)
Q Consensus 150 ~~~~l~~~L~~~ 161 (178)
+|..+.+.|++.
T Consensus 667 d~~~~~d~lre~ 678 (747)
T COG3973 667 DCKAVMDSLREK 678 (747)
T ss_pred HHHHHHHHHhhc
Confidence 999999999864
No 294
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.10 E-value=42 Score=27.28 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=42.2
Q ss_pred EeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH-HHHHHHHHh
Q 030396 20 ISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD-FVEELARSI 93 (178)
Q Consensus 20 i~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~-~~~~~~~~~ 93 (178)
+.+|..+...+.. ..+.+++++|++..+..+......+..+++...+...-.+.+|||... .+.+....|
T Consensus 239 ~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 239 IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 3455555554442 356789999999998643213455566666522222345677999874 466666666
No 295
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=70.81 E-value=15 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=37.9
Q ss_pred CCcEEEeCcH---------HHHHHHHcC--CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 15 SCDILISTPL---------RLRLAIRRK--KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 15 ~~~Iii~TP~---------~l~~~l~~~--~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
-||+.+-.|+ .+.++...- .-..+.-+.+||||||.|-... ...+.+++.. .+.+..+++.|
T Consensus 71 HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~a--aNaLLK~LEE-Pp~~~~fiL~t 143 (328)
T PRK05707 71 HPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNA--ANALLKSLEE-PSGDTVLLLIS 143 (328)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHH--HHHHHHHHhC-CCCCeEEEEEE
Confidence 4788887774 233333221 1123567899999999996655 5556666666 55555555444
No 296
>PRK07952 DNA replication protein DnaC; Validated
Probab=70.74 E-value=11 Score=28.37 Aligned_cols=72 Identities=22% Similarity=0.197 Sum_probs=41.9
Q ss_pred CCCcEEEeCcHHHHHHHHcC----CC-------CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 14 FSCDILISTPLRLRLAIRRK----KI-------DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~----~~-------~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
.+..+++.|-..+...++.. .. .+...+++||||++..-....-...+..|+..-......+++.|---
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 45677777776666544321 11 15789999999999975433123356667766333455655554443
Q ss_pred cHH
Q 030396 83 PDF 85 (178)
Q Consensus 83 ~~~ 85 (178)
+.+
T Consensus 206 ~~~ 208 (244)
T PRK07952 206 MEE 208 (244)
T ss_pred HHH
Confidence 333
No 297
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=70.73 E-value=12 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQT 175 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~ 175 (178)
...+++|.|++...+...+..+.. .++.+..++|+.+..
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSID 110 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHH
Confidence 455799999999999988776644 478889999987753
No 298
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=70.63 E-value=27 Score=22.86 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=27.0
Q ss_pred ceEEEEEcCCh---hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHH
Q 030396 112 IKQKLVFAGSE---EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 112 i~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~ 156 (178)
+....+.+... ...+..+.+.++.. .+|+++||.|-.++-.+..
T Consensus 58 l~y~~iPv~~~~~~~~~v~~f~~~l~~~-~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 58 LQYVHIPVDGGAITEEDVEAFADALESL-PKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp -EEEE----TTT--HHHHHHHHHHHHTT-TTSEEEE-SCSHHHHHHHH
T ss_pred CeEEEeecCCCCCCHHHHHHHHHHHHhC-CCCEEEECCCChhHHHHHH
Confidence 44444444332 35667777777776 6799999999998877665
No 299
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=70.54 E-value=6.9 Score=33.10 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+-+.+|+||||.|-... ...+...+.. .+....+++++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A--~NALLK~LEE-pp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA--FNALLKTLEE-PPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH--HHHHHHHHhh-cCCceEEEEEE
Confidence 3667899999999996544 4556666666 56666666554
No 300
>PRK07411 hypothetical protein; Validated
Probab=70.35 E-value=7.2 Score=31.59 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..+++++||.+-.++...+..|++.|++...+.||+.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHH
Confidence 4578999999999999999999999999888888864
No 301
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=70.17 E-value=7 Score=31.64 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..++++++|.+-.++...+..|...|++ +..+.||+.
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 4568999999999999999999999994 888999874
No 302
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=70.14 E-value=8.1 Score=29.62 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCch-HHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKD-RAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~-~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
.+..+..-+.-....++||||++-. .+-.++..|...|++ +..+.||++
T Consensus 74 ~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 74 TFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 3333333333344668999998754 456677788888985 788888764
No 303
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=69.93 E-value=9.4 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=26.9
Q ss_pred CeeEEEEeccccccccCCCh----hhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 39 RVEYLVLDEADKLFEVGNLL----KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~----~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
.-.++|+|||+..+...... +.+...+.. .....--+++..--+..+...++..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~-hRh~g~diiliTQ~~~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQ-HRHYGWDIILITQSPSQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGG-CCCTT-EEEEEES-GGGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHH-hCcCCcEEEEEeCCHHHHhHHHHHH
Confidence 45799999999998765331 222344444 3333445555555555566655543
No 304
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.67 E-value=12 Score=32.14 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..+-+.+||||+|.|-..+ .+.+...+.. .+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A--~NALLK~LEE-pp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG--FNALLKIVEE-PPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHH--HHHHHHHHhc-CCCCeEEEEEe-CChH
Confidence 3567899999999996554 4444555555 44455555443 5443
No 305
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.37 E-value=6.2 Score=31.51 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
++-+.+|+||+|.+-... .+.+...+.. .+....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a--~naLLk~lEe-~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS--FNALLKTLEE-PPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHH--HHHHHHHHhc-CCCCeEEEEE
Confidence 456799999999995544 3334444444 4455555554
No 306
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=68.67 E-value=16 Score=28.74 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=37.7
Q ss_pred CCcEEEeCcH-------HHHHHHHc---CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 15 SCDILISTPL-------RLRLAIRR---KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 15 ~~~Iii~TP~-------~l~~~l~~---~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
-||+.+..|+ .+.++... .. ..+.-+.+||||+|.|-... .+.+...+.. .+....+++.+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a--~NaLLK~LEE-Pp~~~~~Il~t 147 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASA--ANSLLKFLEE-PSGGTTAILLT 147 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHH--HHHHHHHhcC-CCCCceEEEEe
Confidence 4678777773 33333321 22 24566899999999996554 5556666665 55666655543
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.44 E-value=8.4 Score=25.12 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.4
Q ss_pred eeEEEEeccccccccC
Q 030396 40 VEYLVLDEADKLFEVG 55 (178)
Q Consensus 40 l~~lViDE~d~ll~~~ 55 (178)
...+++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999997643
No 308
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=68.41 E-value=8.3 Score=29.52 Aligned_cols=29 Identities=28% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCchHHHHHHHHhhhCCC-ceEeeecCCCc
Q 030396 146 QSKDRAKELYGELAFDDI-RAGVIHSDLSQ 174 (178)
Q Consensus 146 ~t~~~~~~l~~~L~~~g~-~~~~lh~~~~~ 174 (178)
.|..-|+.++++|+..|. .+..-|.++..
T Consensus 256 RSV~iae~La~~l~~~~~~~v~v~HRd~~~ 285 (286)
T COG1660 256 RSVYIAEQLAEYLRARGKYNVQVRHRDLER 285 (286)
T ss_pred chHHHHHHHHHHHHhccCceEEEeehhhhc
Confidence 688889999999998865 89999988754
No 309
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=68.09 E-value=7 Score=29.22 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCcEEEeCcHHHHHHHH-------cCCCC-----------CCCeeEEEEeccccccccC
Q 030396 15 SCDILISTPLRLRLAIR-------RKKID-----------LSRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~-------~~~~~-----------~~~l~~lViDE~d~ll~~~ 55 (178)
.-.|+++||+.++++.- .+... +.....=|+||+|..++-.
T Consensus 130 ~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~k 188 (229)
T PF12340_consen 130 SGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSVK 188 (229)
T ss_pred cCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCcc
Confidence 44699999999887531 11111 2344445999999987644
No 310
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.05 E-value=8.2 Score=34.80 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.+-+.+||||+|.|-... .+.+.+++.. .+....+++. +|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA--qNALLKtLEE-PP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS--FNALLKTLEE-PPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH--HHHHHHHHhc-cCCCeEEEEE-CCCchh
Confidence 456899999999995444 4555555555 4555555553 454443
No 311
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=68.00 E-value=10 Score=33.17 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=30.4
Q ss_pred eCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccC--CChhhHHHHHh
Q 030396 21 STPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVG--NLLKHIDPVVK 66 (178)
Q Consensus 21 ~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~--~~~~~i~~i~~ 66 (178)
+-|||+.+-+++ +..|. .+++||+|+|-++. +-.+.+.+++.
T Consensus 402 amPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 402 AMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred cCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhcC
Confidence 569999998876 66665 88999999997653 34444555544
No 312
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=67.87 E-value=14 Score=29.19 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=40.1
Q ss_pred CCcEEEeCcHH---------HHHHHH---cCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 15 SCDILISTPLR---------LRLAIR---RKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 15 ~~~Iii~TP~~---------l~~~l~---~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
-||+.+-+|+. +.++.+ .+. ..+.-+.+|||+||.|-... ...+.+++.. .+.+.-+++.|.
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~A--aNaLLKtLEE-Pp~~t~fiL~t~ 146 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDAA--ANALLKTLEE-PPENTWFFLACR 146 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHHH--HHHHHHHhcC-CCCCeEEEEEEC
Confidence 48888888862 222222 122 24677999999999996655 5666666666 566666666554
No 313
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.83 E-value=6.1 Score=34.07 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=24.7
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+.+.+||||+|.|-... .+.+.+.+.. .+....+++ .+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a--~NaLLKtLEE-PP~~~~fIL-~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA--FNAMLKTLEE-PPEYLKFVL-ATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHH--HHHHHHhccc-CCCCeEEEE-EECCch
Confidence 467899999999995544 3333333443 334444444 445443
No 314
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=67.54 E-value=29 Score=24.93 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
-...+++|+||+=..++.| --.+.+..+++. .|...-+|+..-..|+++.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~-rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhC
Confidence 3566899999999999888 234556666666 6666777777777777666543
No 315
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=67.48 E-value=6.3 Score=34.15 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
++-+.+||||+|.|-... .+.+.+++.. .+....+++. +|-+
T Consensus 118 g~~KV~IIDEah~Ls~~a--~NALLKtLEE-Pp~~v~FIL~-Tt~~ 159 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS--FNALLKTLEE-PPEHVKFLLA-TTDP 159 (647)
T ss_pred CCCEEEEEechHhCCHHH--HHHHHHHHHc-CCCCeEEEEe-cCCc
Confidence 567899999999996555 4445555555 4444444443 4433
No 316
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=67.32 E-value=4.8 Score=29.40 Aligned_cols=46 Identities=7% Similarity=0.085 Sum_probs=26.3
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...+.+|+||+|.+-........+..++......... +++|++.++
T Consensus 89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~-iIits~~~~ 134 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGR-LLIAGRAAP 134 (226)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCe-EEEECCCCh
Confidence 4456899999999854321245566665552222344 555666543
No 317
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=67.19 E-value=14 Score=33.71 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=25.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
..+.+|||||+|.|...+ ...+..+++.......+++++.+
T Consensus 868 r~v~IIILDEID~L~kK~--QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT--QKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred ccceEEEeehHhhhCccH--HHHHHHHHHHhhccCCeEEEEEe
Confidence 345689999999998654 45566666652223445444433
No 318
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=67.09 E-value=6.8 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
.+.-+.+|||+||.|-... ...+.+++.. .+.+..+++.|.
T Consensus 111 ~g~~kV~iI~~ae~m~~~A--aNaLLKtLEE-Pp~~~~fiL~~~ 151 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAA--CNALLKTLEE-PSPGRYLWLISA 151 (319)
T ss_pred cCCcEEEEeccHhhhCHHH--HHHHHHHhhC-CCCCCeEEEEEC
Confidence 3567999999999996655 6666667777 666777666654
No 319
>PRK10869 recombination and repair protein; Provisional
Probab=66.90 E-value=6.9 Score=33.28 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=50.9
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEE
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVF 118 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~ 118 (178)
...++|+||.|.=++.. ....+..+++. +....|+++ +|..+.+.. + .+..+.... ... .+.....+.
T Consensus 452 ~~~~li~DEpd~gld~~-~~~~v~~~l~~-l~~~~qvi~--iTH~~~~~~----~-ad~~~~v~k-~~~--~~~t~s~i~ 519 (553)
T PRK10869 452 ETPALIFDEVDVGISGP-TAAVVGKLLRQ-LGESTQVMC--VTHLPQVAG----C-GHQHFFVSK-ETD--GGMTETHMQ 519 (553)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHHHHH-HhcCCEEEE--EecCHHHHH----h-CCEEEEEec-ccc--CCeeeEEEE
Confidence 56899999999998877 78888888888 555677554 444444332 2 333333222 111 122222333
Q ss_pred cCChhhHHHHHHHHHH
Q 030396 119 AGSEEGKLLALRQSFA 134 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~ 134 (178)
.-+...++..+..++.
T Consensus 520 ~L~~~~R~~EiARMl~ 535 (553)
T PRK10869 520 PLDKKARLQELARLLG 535 (553)
T ss_pred ECChhHHHHHHHHHhC
Confidence 3466778888888875
No 320
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.80 E-value=14 Score=31.00 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=26.7
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
..+-+.+|+||+|.|-... .+.+...+.. .++...+++ .+|-+..
T Consensus 114 ~~~~KVvIIDEah~Ls~~A--~NaLLK~LEe-Pp~~v~fIl-atte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA--FNALLKTLEE-PAPHVKFIL-ATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCHHH--HHHHHHHHhC-CCCCeEEEE-EeCChHH
Confidence 3567899999999985544 3444555554 444444444 3454433
No 321
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=66.56 E-value=8.3 Score=28.79 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.1
Q ss_pred cCCCcEEEe---CcHHHHHHHHc----CCCCCCCeeEEEEecc
Q 030396 13 KFSCDILIS---TPLRLRLAIRR----KKIDLSRVEYLVLDEA 48 (178)
Q Consensus 13 ~~~~~Iii~---TP~~l~~~l~~----~~~~~~~l~~lViDE~ 48 (178)
++.+.|.++ ||..+.+.+.+ +.++++++.++-+||-
T Consensus 27 ~~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~ 69 (232)
T PRK09762 27 KPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEW 69 (232)
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCcEE
Confidence 345788888 99999988863 5789999999999995
No 322
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.23 E-value=8.1 Score=32.64 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=25.0
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
++-+.+|+||+|.|-... .+.+.+.+.. .+....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a--~naLLK~LEe-pp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA--FNAMLKTLEE-PPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH--HHHHHHHHhC-CCCCEEEEEEe
Confidence 456899999999985544 3444455555 45566655544
No 323
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=66.22 E-value=17 Score=32.16 Aligned_cols=54 Identities=24% Similarity=0.138 Sum_probs=44.9
Q ss_pred hHHHHHHHHH-H--hcCCC--CEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSF-A--ESLNP--PVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll-~--~~~~~--~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|...+.+++ . ..... +++||+.-....+-+...|...+++...++|+++.++|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r 750 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRR 750 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhH
Confidence 5777777777 2 22234 89999999999999999999999999999999987766
No 324
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.15 E-value=8.6 Score=32.61 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=50.8
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEE
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVF 118 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~ 118 (178)
..-.+||||+|.=++-. ....|-..++. +....|++++ |.-|.|....... ..| ..... ......-+.
T Consensus 453 ~~ptlIFDEVD~GIsG~-~A~aVg~~L~~-Ls~~~QVl~V--THlPQVAa~ad~H----~~V--~K~~~--~~~T~s~V~ 520 (557)
T COG0497 453 DTPTLIFDEVDTGISGR-VAQAVGKKLRR-LSEHHQVLCV--THLPQVAAMADTH----FLV--EKESE--DGRTESRVR 520 (557)
T ss_pred CCCeEEEecccCCCChH-HHHHHHHHHHH-HhcCceEEEE--ecHHHHHhhhcce----EEE--EEecC--CCceEEeee
Confidence 34589999999976655 67778888888 8889997776 3444444432221 222 21111 111222233
Q ss_pred cCChhhHHHHHHHHHHh
Q 030396 119 AGSEEGKLLALRQSFAE 135 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~~ 135 (178)
.-+...+...+..++.-
T Consensus 521 ~L~~eeRveEiARMl~G 537 (557)
T COG0497 521 PLDKEERVEEIARMLGG 537 (557)
T ss_pred eCCHhHHHHHHHHHhcC
Confidence 44666788888888753
No 325
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=65.91 E-value=9.5 Score=35.53 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 123 EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
-.+.++|+.-|+.. ..++|||+.-.+..+-|..+|..+||...-+.|....++|
T Consensus 1262 LQtLAiLLqQLk~e-ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqR 1315 (1958)
T KOG0391|consen 1262 LQTLAILLQQLKSE-GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQR 1315 (1958)
T ss_pred HHHHHHHHHHHHhc-CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHH
Confidence 34555555555554 7899999999999999999999999999999999888876
No 326
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=65.74 E-value=9.5 Score=34.64 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=38.4
Q ss_pred CCcEEEeCcHHHHHHHH----------cCC---CC-CCCe-eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 15 SCDILISTPLRLRLAIR----------RKK---ID-LSRV-EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~----------~~~---~~-~~~l-~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+|+|.|-+.+..-.. .+. ++ +... -.+|+||.|.+-..+ ..+..|.+. ++.. ++.+|
T Consensus 162 ~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~---k~~~~i~~l--npl~-~lrys 235 (986)
T PRK15483 162 TIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN---KFYQAIEAL--KPQM-IIRFG 235 (986)
T ss_pred ceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch---HHHHHHHhc--Cccc-EEEEe
Confidence 58999999998875211 111 11 1111 267999999994433 345556433 3222 45699
Q ss_pred ecCcH
Q 030396 80 ATLPD 84 (178)
Q Consensus 80 AT~~~ 84 (178)
||++.
T Consensus 236 AT~~~ 240 (986)
T PRK15483 236 ATFPD 240 (986)
T ss_pred eecCC
Confidence 99986
No 327
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.71 E-value=12 Score=32.65 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
++-+.+||||+|.|-... ...+..++.. .+....+|+ .+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A--~NALLKtLEE-PP~~v~FIL-aTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS--FNALLKTLEE-PPEHVKFLF-ATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHH--HHHHHHHHhc-CCCCcEEEE-EECCh
Confidence 456899999999885544 4556666665 455555444 44443
No 328
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=65.70 E-value=41 Score=30.23 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCce
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIRA 165 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~~ 165 (178)
..++++|+++|.+..+.+++.|....++.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~ 674 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH 674 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE
Confidence 46899999999999999999997665555
No 329
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=65.66 E-value=21 Score=22.95 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHH----hcCCCCEEEEeCCchHHHHHHHHhhhCC---CceEeeecCCCcc
Q 030396 120 GSEEGKLLALRQSFA----ESLNPPVLIFVQSKDRAKELYGELAFDD---IRAGVIHSDLSQT 175 (178)
Q Consensus 120 ~~~~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~g---~~~~~lh~~~~~~ 175 (178)
+....|...+..++. ....++++|+|++..-+++..+.+.... ..+..++++....
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIK 70 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchh
Confidence 334445444444333 3356899999999999999888886544 7788888765543
No 330
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=65.28 E-value=13 Score=29.23 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCc-hHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSK-DRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~-~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+..++.-+.-....++||||.+- ..+-.++-.|...|+ ++..+.||++
T Consensus 90 ~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 90 AFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 344443333333466899999654 345677778899999 5889999864
No 331
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.83 E-value=9.9 Score=33.28 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
.+-+++||||+|.|-... ...+.+++.. .+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A--~NALLKtLEE-Pp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA--FNAMLKTLEE-PPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH--HHHHHHHHHh-CCCCcEEEEEe
Confidence 456899999999875433 4445555555 45566655543
No 332
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.69 E-value=3.2 Score=29.63 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=39.0
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCC---------CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKI---------DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~---------~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
++..+..+++.+...|.+.++.... .+.+++++|+||.-..-......+.+..|+.... .+..+++ +.-
T Consensus 71 ~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~-~~~~tIi-TSN 148 (178)
T PF01695_consen 71 AIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDERY-ERKPTII-TSN 148 (178)
T ss_dssp HHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHHH-HT-EEEE-EES
T ss_pred hccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeeecccccccchhhhhHhh-cccCeEe-eCC
Confidence 3446777888887788887765321 1678899999998764221113444555555422 2344444 555
Q ss_pred CcH
Q 030396 82 LPD 84 (178)
Q Consensus 82 ~~~ 84 (178)
+++
T Consensus 149 ~~~ 151 (178)
T PF01695_consen 149 LSP 151 (178)
T ss_dssp S-H
T ss_pred Cch
Confidence 553
No 333
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=64.52 E-value=15 Score=27.70 Aligned_cols=45 Identities=29% Similarity=0.263 Sum_probs=24.4
Q ss_pred eEEEEeccccccccC--CC-hhhHHHHHhhCCCC-CceEEEEeecCcHHH
Q 030396 41 EYLVLDEADKLFEVG--NL-LKHIDPVVKACSNP-SIVRSLFSATLPDFV 86 (178)
Q Consensus 41 ~~lViDE~d~ll~~~--~~-~~~i~~i~~~~~~~-~~q~i~~SAT~~~~~ 86 (178)
..+++||+|.|...+ .+ .+.+..+++. +.. ...+++.-|+.+.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~-~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKG-MEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHH-HhccCCCEEEEecCCcchh
Confidence 589999999996432 12 3455556665 322 222333334445444
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=64.49 E-value=9.3 Score=30.67 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=27.2
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
-+.-+.+||||+|.|-... ...+.+.+.. .+....++++|.
T Consensus 139 ~~~~kVviIDead~m~~~a--anaLLK~LEe-pp~~~~~IL~t~ 179 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA--ANALLKVLEE-PPARSLFLLVSH 179 (365)
T ss_pred cCCCEEEEEechHhcCHHH--HHHHHHHHhc-CCCCeEEEEEEC
Confidence 3567899999999995544 5556666666 555555555443
No 335
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.76 E-value=15 Score=31.39 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+-+.+||||+|.|-... .+.+..++.. .+...-+|+. +|-+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a--~naLLk~LEe-pp~~~~fIl~-t~~~~ 160 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA--FNALLKTLEE-PPPHVKFIFA-TTEPH 160 (576)
T ss_pred CCceEEEEEChhhCCHHH--HHHHHHHHHc-CCCCeEEEEE-eCChh
Confidence 566899999999885544 4455555555 4445554443 45443
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.75 E-value=13 Score=32.13 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=23.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
..-+++||||+|.|-... ...+...+.. .+... ++++.+|-+..
T Consensus 118 g~~kVIIIDEad~Lt~~a--~naLLk~LEE-P~~~~-ifILaTt~~~k 161 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA--FNALLKTLEE-PPARV-TFVLATTEPHK 161 (624)
T ss_pred CCceEEEEEChHhCCHHH--HHHHHHHhhc-cCCCE-EEEEecCChhh
Confidence 456899999999995433 2333333333 22333 34444555443
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=63.71 E-value=15 Score=29.11 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=41.1
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
..+++++|.+..+-.+....+.+..+.+. ..+..-+++++||...+....+..|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~-~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRV-TKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHh-hCCceEEEeeccccchhHHHHHHHHH
Confidence 45699999999986443367778888776 56666678889998877666666664
No 338
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=63.53 E-value=8.9 Score=27.29 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=29.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
..+.+++++||.+.-++.. ....+...+..+.....++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~-~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPT-NRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3566899999999998887 666666666663333466665543
No 339
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=63.45 E-value=22 Score=28.02 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCcEEEeCcHH---------HHHHHHc--CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 15 SCDILISTPLR---------LRLAIRR--KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 15 ~~~Iii~TP~~---------l~~~l~~--~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
-||+.+..|+. +.++... ..-..+.-+.+|||+||.|-... .+.+.+.+.. .+++..+++.|..
T Consensus 73 HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A--aNaLLKtLEE-Pp~~t~fiL~t~~ 147 (319)
T PRK06090 73 HPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESA--SNALLKTLEE-PAPNCLFLLVTHN 147 (319)
T ss_pred CCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHH--HHHHHHHhcC-CCCCeEEEEEECC
Confidence 48888887741 2222211 11224567999999999996655 6666666666 6666665555443
No 340
>PF13514 AAA_27: AAA domain
Probab=63.06 E-value=14 Score=34.33 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=44.0
Q ss_pred EEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCcEEEE
Q 030396 42 YLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVI 101 (178)
Q Consensus 42 ~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~ 101 (178)
-||+|++=.-+++. -...+..++.. +....|+|+| |..+++.++++..+++.+.|+
T Consensus 1054 P~IlDD~fvnfDd~-R~~~~l~~L~~-ls~~~QVI~F--Tch~~l~~~a~~~~~~~v~v~ 1109 (1111)
T PF13514_consen 1054 PFILDDIFVNFDDE-RARAALELLAE-LSRRRQVIYF--TCHEHLVELAREVFGDRVNVH 1109 (1111)
T ss_pred cEEeeCCccccCHH-HHHHHHHHHHH-hccCCeEEEE--eccHHHHHHHHHhcCCCCcee
Confidence 48999998888887 77788888888 7788999998 455778888888776655543
No 341
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=62.86 E-value=20 Score=25.59 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=33.2
Q ss_pred CCCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
-...+++|+||+=..++.+ =-.+++..+++. -+...-+|+..-..|+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~-rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLEN-RPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHT-S-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHc-CCCCeEEEEECCCCCHHHHHhCC
Confidence 4667899999999998888 224456666666 66777777777777777666543
No 342
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=62.75 E-value=8.3 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=29.6
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.++++||.+.-+... ....+..++..+...+.|+++ +|-++.
T Consensus 259 ~illiDEpE~~LHp~-~q~~l~~~l~~~~~~~~Qvii--tTHSp~ 300 (303)
T PF13304_consen 259 SILLIDEPENHLHPS-WQRKLIELLKELSKKNIQVII--TTHSPF 300 (303)
T ss_dssp SEEEEESSSTTSSHH-HHHHHHHHHHHTGGGSSEEEE--EES-GG
T ss_pred eEEEecCCcCCCCHH-HHHHHHHHHHhhCccCCEEEE--eCccch
Confidence 689999999998887 666666777763234789766 455443
No 343
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=62.74 E-value=5.7 Score=35.53 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCcEEEeCcHHHH-HHHHcCCC------CCCCeeEEEEecccccc
Q 030396 15 SCDILISTPLRLR-LAIRRKKI------DLSRVEYLVLDEADKLF 52 (178)
Q Consensus 15 ~~~Iii~TP~~l~-~~l~~~~~------~~~~l~~lViDE~d~ll 52 (178)
.|||+.||...+. +.++.+.. -...+.+.|+||+|.++
T Consensus 167 ~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 167 ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 5899999998865 56664321 25778899999999976
No 344
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=62.72 E-value=27 Score=26.46 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=48.5
Q ss_pred cE-EEeCcHHHHHHHHcCCCCCCCeeEEEEec-ccc---ccccCCC-----hhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 17 DI-LISTPLRLRLAIRRKKIDLSRVEYLVLDE-ADK---LFEVGNL-----LKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 17 ~I-ii~TP~~l~~~l~~~~~~~~~l~~lViDE-~d~---ll~~~~~-----~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+| |+|||+.+.+-+.++.+.-......|..+ +.. +++.|.+ ...+..+++.+...+...+++..|-=+-+
T Consensus 107 ~IgvLAT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l 186 (251)
T TIGR00067 107 RVLVIATNATIKSNAYHEALKEIANDLLVEMLACPELVPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLGCTHFPLL 186 (251)
T ss_pred eEEEEeCHHHHhhhHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEECcCChHHH
Confidence 44 89999999877765444322333444433 222 3444522 12455556653345778899999988887
Q ss_pred HHHHHHhccCc
Q 030396 87 EELARSIMHDA 97 (178)
Q Consensus 87 ~~~~~~~~~~~ 97 (178)
...++..++.+
T Consensus 187 ~~~i~~~~~~~ 197 (251)
T TIGR00067 187 KEEIEQYLPEH 197 (251)
T ss_pred HHHHHHHcCCC
Confidence 77767665543
No 345
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.45 E-value=8.7 Score=32.69 Aligned_cols=84 Identities=18% Similarity=0.052 Sum_probs=50.2
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEE
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVF 118 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~ 118 (178)
..+++|+||.+.-++.. ....+..++.. +....|++++ |..+.+.. + .+...+.. .... .+.....+.
T Consensus 462 ~~~~lilDEp~~gld~~-~~~~~~~~l~~-l~~~~~vi~i--TH~~~~~~----~-ad~~~~l~-k~~~--~~~t~s~i~ 529 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGE-TAQAIAKKLAQ-LSERHQVLCV--THLPQVAA----H-ADAHFKVE-KEGL--DGRTATRVR 529 (563)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHHHHH-HhcCCEEEEE--EChHHHHH----h-cCeEEEEE-EccC--CCcEEEEEE
Confidence 46899999999998887 77878888887 4456776654 33333222 2 33333322 2211 122223334
Q ss_pred cCChhhHHHHHHHHHH
Q 030396 119 AGSEEGKLLALRQSFA 134 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~ 134 (178)
.-+...++..+..++.
T Consensus 530 ~L~~~~r~~EiArml~ 545 (563)
T TIGR00634 530 PLSGEERVAELARMLA 545 (563)
T ss_pred ECCccHHHHHHHHHhC
Confidence 4466778888888874
No 346
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=62.22 E-value=13 Score=32.87 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=34.5
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhC---CCceEeeecCCCcccc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFD---DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~---g~~~~~lh~~~~~~~R 177 (178)
+..++|+.++|++-|......|... |+.+..++|+.+..+|
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r 123 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEER 123 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHH
Confidence 3568999999999999999988765 6789999999887664
No 347
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=61.88 E-value=6.8 Score=32.87 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=43.8
Q ss_pred hHHHHHHHHHH----hcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFA----ESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
-|++.|.+-+. +...-+.|||..--+-.+-+.-.|.+.|+.|+-+-|+|++..|
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ar 677 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAAR 677 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHH
Confidence 36666666443 3445689999988888888889999999999999999999876
No 348
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=61.63 E-value=14 Score=32.62 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEe---CCchHHHHHHHHh-hhCCCceEeeecCCCcccc
Q 030396 123 EGKLLALRQSFAESLNPPVLIFV---QSKDRAKELYGEL-AFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~---~t~~~~~~l~~~L-~~~g~~~~~lh~~~~~~~R 177 (178)
..|+-.|..++... ..++++|+ .+-.+...+.+.+ .-.|+.+..+||.|+..||
T Consensus 577 s~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qR 634 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQR 634 (776)
T ss_pred hhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHH
Confidence 35666666666333 45555554 4444444444444 4459999999999999988
No 349
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=60.66 E-value=33 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 38 SRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
.+.+++|+||.-..+..+ =-.+.+..+++. -|...-+|+..-..|+++.+.+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~-kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKA-RPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhc-CCCCcEEEEECCCCCHHHHHHHHH
Confidence 356799999999999888 123344455554 555666666666678777665554
No 350
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=59.89 E-value=14 Score=28.81 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
..-+.+|+||+|.+-... ...+..++.. .+....+++ +++-+
T Consensus 124 ~~~~vlilDe~~~l~~~~--~~~L~~~le~-~~~~~~~Il-~~~~~ 165 (337)
T PRK12402 124 ADYKTILLDNAEALREDA--QQALRRIMEQ-YSRTCRFII-ATRQP 165 (337)
T ss_pred CCCcEEEEeCcccCCHHH--HHHHHHHHHh-ccCCCeEEE-EeCCh
Confidence 445789999999885433 5556666666 455566554 44433
No 351
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=59.87 E-value=13 Score=34.81 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=38.4
Q ss_pred hcc-CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 11 LSK-FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 11 ~l~-~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
+.+ +.+||.|++=..+..-+. .+.-++-+|+|+|||+.+=++. ...++.++.. + ..|.++++.|
T Consensus 710 W~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk--sqrWQAllnf--n-sqrRLLLtgT 774 (1958)
T KOG0391|consen 710 WAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK--SQRWQALLNF--N-SQRRLLLTGT 774 (1958)
T ss_pred ccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh--HHHHHHHhcc--c-hhheeeecCC
Confidence 444 457788877655543221 1222344699999999996655 5667777775 3 3344555555
No 352
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=59.74 E-value=32 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHh
Q 030396 121 SEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGEL 158 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L 158 (178)
....+...++.++.+. ...+++|.|.+.+.++.+-+.|
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~L 49 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEAL 49 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 4556888888888743 4678999999999999999988
No 353
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=59.61 E-value=12 Score=29.67 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=39.3
Q ss_pred CCCcEEEeCcH--------HHHHHHHc--CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 14 FSCDILISTPL--------RLRLAIRR--KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 14 ~~~~Iii~TP~--------~l~~~l~~--~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
.-||+.+-.|. .+.++... ..-.-+.-+.+|+|+||.|-... ...+.+++.. .+++..+++.|.
T Consensus 72 ~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~A--aNaLLKtLEE-Pp~~~~fiL~t~ 145 (325)
T PRK06871 72 NHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA--ANALLKTLEE-PRPNTYFLLQAD 145 (325)
T ss_pred CCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHH--HHHHHHHhcC-CCCCeEEEEEEC
Confidence 34888877773 12222221 11124667999999999996655 6666666666 666666665543
No 354
>CHL00181 cbbX CbbX; Provisional
Probab=59.50 E-value=25 Score=27.20 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred eEEEEeccccccccC---CC-hhhHHHHHhhCCC-CCceEEEEeecCcHHHHH
Q 030396 41 EYLVLDEADKLFEVG---NL-LKHIDPVVKACSN-PSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 41 ~~lViDE~d~ll~~~---~~-~~~i~~i~~~~~~-~~~q~i~~SAT~~~~~~~ 88 (178)
..++|||+|.+...+ ++ .+.+..+++. +. ....++++-|+.+..+..
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~-me~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQV-MENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHH-HhcCCCCEEEEEeCCcHHHHH
Confidence 589999999985431 12 3334444454 32 223345555777765544
No 355
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.25 E-value=13 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=25.1
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
++-+.+|+||+|.|-... .+.+...+.. .+....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a--~naLLK~LEe-pp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS--FNALLKTLEE-PPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH--HHHHHHHHhc-CCCCceEEEEE
Confidence 456799999999985544 4455555555 45555555543
No 356
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=59.18 E-value=11 Score=32.05 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=31.3
Q ss_pred CEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 140 PVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 140 ~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
=.|||++|++-|..+.+.|.. -|+.++++.|||..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLav 303 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAV 303 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHH
Confidence 399999999999999999954 48999999999975
No 357
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=59.13 E-value=15 Score=31.30 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...-+.+||||+|.|-... ...+...+.. .+.... +++.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a--~naLLKtLEe-pp~~~i-fIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA--FNALLKTLEE-PPAHVI-FILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHHH--HHHHHHHhcC-CCCCeE-EEEEeCChh
Confidence 3556899999999995544 3333334443 333333 333445443
No 358
>PTZ00209 retrotransposon hot spot protein; Provisional
Probab=58.90 E-value=1.1e+02 Score=26.92 Aligned_cols=35 Identities=3% Similarity=0.004 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 127 LALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 127 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
.-..+.-++....++|+=|....+++..+.+++..
T Consensus 284 ~ny~~W~kq~~a~rIimNCpde~DvKAmcaWmK~~ 318 (693)
T PTZ00209 284 VRYKYWMKNLEQTRIILNCDDVRDIKAFVAWKKLS 318 (693)
T ss_pred hhhHHHHhhcCCeEEEEeCCcHHHHHHHHHHhccc
Confidence 34445566666788999999999999999888544
No 359
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=58.54 E-value=15 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=30.7
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...+++|+|||.-+-... +..++-.+...+.+++++|.|-+.
T Consensus 351 qtfDLLIVDEAqFIk~~a-----l~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 351 QDFNLLFVDEANFIRPDA-----VQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred CcccEEEEechhhCCHHH-----HHHHHHHHhccCccEEEEecCCCC
Confidence 467899999999994433 555554433358999999999664
No 360
>PRK10536 hypothetical protein; Provisional
Probab=58.49 E-value=18 Score=27.64 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 28 LAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 28 ~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.+++...++ + .++|+|||..+ ...++..++.. ...+..+++.
T Consensus 168 ~ymRGrtl~--~-~~vIvDEaqn~-----~~~~~k~~ltR-~g~~sk~v~~ 209 (262)
T PRK10536 168 AYMRGRTFE--N-AVVILDEAQNV-----TAAQMKMFLTR-LGENVTVIVN 209 (262)
T ss_pred HHhcCCccc--C-CEEEEechhcC-----CHHHHHHHHhh-cCCCCEEEEe
Confidence 556665543 2 69999999988 35778888888 7778887765
No 361
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=58.48 E-value=21 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
+...+.+|+||+-.+- ...+..+++.+.....+++++.=+
T Consensus 91 ~~~~~vliVDEasmv~-----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD-----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B-----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEecccccC-----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 4556899999999983 455788888743347787777544
No 362
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=58.33 E-value=18 Score=31.34 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh-----CCCceEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF-----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~-----~g~~~~~lh~~~~~ 174 (178)
...++||.|+|++-|..+++.+.. .|+.+..++|+.+.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~ 115 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCH
Confidence 345799999999999999887754 27899999998764
No 363
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=57.79 E-value=17 Score=29.09 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=17.8
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
..-.+|+||+|.+.... -.+.+..+++.
T Consensus 138 ~~~viviDE~d~l~~~~-~~~~l~~l~~~ 165 (394)
T PRK00411 138 RVLIVALDDINYLFEKE-GNDVLYSLLRA 165 (394)
T ss_pred CEEEEEECCHhHhhccC-CchHHHHHHHh
Confidence 44688999999998322 23445555543
No 364
>PRK06620 hypothetical protein; Validated
Probab=57.78 E-value=14 Score=27.20 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=24.7
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
+.+.+++||+|.+- ...+..++..+.....|+++.|.|-|+.
T Consensus 85 ~~d~lliDdi~~~~-----~~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 85 KYNAFIIEDIENWQ-----EPALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred cCCEEEEeccccch-----HHHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 45689999999551 2345555555333456665555555553
No 365
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=57.59 E-value=29 Score=20.61 Aligned_cols=29 Identities=24% Similarity=0.104 Sum_probs=21.5
Q ss_pred CEEEEeCCchHHHHHHHHhhhCCCceEee
Q 030396 140 PVLIFVQSKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 140 ~~lIF~~t~~~~~~l~~~L~~~g~~~~~l 168 (178)
..+|.++|..+|-...+.|++.|+++..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 45777788888888888888887765543
No 366
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=57.41 E-value=14 Score=29.43 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
-+.-+.+|||+||.|-... ...+.+.+.. .+++.-+++.|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~A--aNaLLKtLEE-Pp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA--ANALLKTLEE-PPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHHH--HHHHHHHhcC-CCcCcEEEEEECC
Confidence 3567899999999996655 5556666665 5555555555433
No 367
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=57.30 E-value=18 Score=31.86 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=24.6
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.-..+++||+|.+-... ...++.. + .+.++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~q-----QdaLL~~-l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-----QDALLPW-V-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH-----HHHHHHH-h-cCceEEEEEecCCCh
Confidence 34589999999985433 2233333 2 345677777776544
No 368
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=56.92 E-value=36 Score=19.50 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=31.5
Q ss_pred EEEEEcCChhhHHHHHHHHHHhcC-----------CCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 114 QKLVFAGSEEGKLLALRQSFAESL-----------NPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 114 ~~~~~~~~~~~k~~~l~~ll~~~~-----------~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
+..+.+++...-+..+.+++.+.. ..+.++-..+ ...+.+.+.|++.||++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV-SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE-CCHHHHHHHHHHCCCEEE
Confidence 344556666666666666665443 1133333344 446788888999998764
No 369
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=56.17 E-value=22 Score=30.63 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=25.7
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+-+.+|+||+|.|-... .+.+...+.. .+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a--~naLLKtLEe-Pp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA--FNALLKTLEE-PPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH--HHHHHHHHHh-CCCCeEEEEEe
Confidence 4567899999999995544 3444444554 45555655544
No 370
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=55.70 E-value=29 Score=26.55 Aligned_cols=63 Identities=6% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCcEEEeCcHH-------HHHHHHc---CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 15 SCDILISTPLR-------LRLAIRR---KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 15 ~~~Iii~TP~~-------l~~~l~~---~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
-||+.+.+|+. +.++.+. ....-..-+.+|+|++|.|-... ...+..++.. .+++.-+++.|.
T Consensus 54 HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~A--aNaLLK~LEE-Pp~~t~fiLit~ 126 (261)
T PRK05818 54 YNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQS--ANSLLKLIEE-PPKNTYGIFTTR 126 (261)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHHH--HHHHHHhhcC-CCCCeEEEEEEC
Confidence 48888877753 2333322 22233457999999999996555 4555555555 555555555544
No 371
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=55.66 E-value=23 Score=26.83 Aligned_cols=108 Identities=9% Similarity=0.068 Sum_probs=63.9
Q ss_pred cccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH----HHHh-ccCcEEEEEcCC---cc---ccCCceEEEEEc
Q 030396 52 FEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL----ARSI-MHDAVRVIVGRK---NT---ASESIKQKLVFA 119 (178)
Q Consensus 52 l~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~----~~~~-~~~~~~v~~~~~---~~---~~~~i~~~~~~~ 119 (178)
++.| .....-..+.+. ..+.-. ++|--+.++-.+. ++.+ +.+-+.+...+- +. ....+.-.+.-.
T Consensus 45 lEaGtGSG~lt~~l~r~-v~p~G~--v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDl 121 (247)
T PF08704_consen 45 LEAGTGSGSLTHALARA-VGPTGH--VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDL 121 (247)
T ss_dssp EEE--TTSHHHHHHHHH-HTTTSE--EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEES
T ss_pred EEecCCcHHHHHHHHHH-hCCCeE--EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeC
Confidence 3443 355555556665 333333 6666776553322 2222 223333333221 11 113456667777
Q ss_pred CChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 120 GSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 120 ~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
++.-+-+.-+...| +.+.+.+.+|+++..+++++++.|++.|+
T Consensus 122 p~Pw~~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 122 PDPWEAIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp SSGGGGHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 77666777777777 33468999999999999999999999986
No 372
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=55.56 E-value=62 Score=26.06 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
....-.+|+||+|.|.... .+.+..+++.--....++.++.-+-.
T Consensus 121 ~~~~~IvvLDEid~L~~~~--~~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 121 KGKTVIVILDEVDALVDKD--GEVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred cCCeEEEEEcchhhhcccc--chHHHHHHhhccccceeEEEEEEecc
Confidence 3556789999999999877 36777777762222344444433333
No 373
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=55.34 E-value=16 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCCEEEEeC--CchHHHHHHHHhhhCCCceEeee
Q 030396 138 NPPVLIFVQ--SKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 138 ~~~~lIF~~--t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
..++++|++ +.+++..+++.|.+.|++++.+.
T Consensus 82 ~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 82 TDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp T-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 478999994 44578889999999999988887
No 374
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.25 E-value=33 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=21.9
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
.-..+++||+|.+.... ...++.. +. +..++++.||-
T Consensus 92 ~~~vL~IDEi~~l~~~~-----q~~LL~~-le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ-----QDALLPH-VE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHH-----HHHHHHH-hh-cCcEEEEEeCC
Confidence 45789999999985433 3334444 22 34455666654
No 375
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=54.67 E-value=20 Score=23.33 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=18.9
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
......+++||+|.+... ....+..++..
T Consensus 82 ~~~~~~lilDe~~~~~~~--~~~~~~~~i~~ 110 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRG--AQNALLRVLET 110 (151)
T ss_pred cCCCeEEEEeChhhhhHH--HHHHHHHHHHh
Confidence 456689999999998332 24445555555
No 376
>COG4889 Predicted helicase [General function prediction only]
Probab=54.47 E-value=12 Score=33.83 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccc
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll 52 (178)
.+--||++|=+.+...-+....-+..++++|+||||+--
T Consensus 279 ~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 279 NGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred CCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccc
Confidence 567799999988877665555556778899999999964
No 377
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=54.36 E-value=27 Score=30.23 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHHHHhc---CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 128 ALRQSFAES---LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 128 ~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
.+.+++... ..+++++||++--.|-..+-.|+..|++ +..+.|++.
T Consensus 210 el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~ 259 (610)
T PRK09629 210 DMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWG 259 (610)
T ss_pred HHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHH
Confidence 445555433 4668999999988888888889999995 888988764
No 378
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=54.30 E-value=9.9 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+++++||.-.-++.. ....+..+++. ......+++++..-...+..
T Consensus 153 ~~~p~lllLDEPt~~LD~~-~~~~l~~~l~~-~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPD-LSERILDLLKR-LNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred hCCCCEEEEeCCcccCCHH-HHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHH
Confidence 4677999999999988887 77778787777 33333456665555444444
No 379
>PRK04195 replication factor C large subunit; Provisional
Probab=54.24 E-value=18 Score=30.11 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.8
Q ss_pred CeeEEEEeccccccc
Q 030396 39 RVEYLVLDEADKLFE 53 (178)
Q Consensus 39 ~l~~lViDE~d~ll~ 53 (178)
.-+++|+||+|.+..
T Consensus 98 ~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 98 RRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEEecCccccc
Confidence 567999999999865
No 380
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=54.21 E-value=88 Score=23.98 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=37.0
Q ss_pred EEEcCChhhHHHHHHHHHHh-----cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 116 LVFAGSEEGKLLALRQSFAE-----SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~-----~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
+..+.+.......+.+.++. ...+.+.|-|.+...+..++..|.+.|+++ .+.++
T Consensus 50 ~~~~~~~~~e~~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~-~~~~~ 109 (351)
T PF13361_consen 50 IIEFDNEEEEAEYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPY-RISGS 109 (351)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-E-EESSS
T ss_pred eeccCCHHHHHHHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhccee-Eeccc
Confidence 44455555444444444432 345679999999999999999999999997 44444
No 381
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=54.12 E-value=35 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=33.2
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~~R 177 (178)
..+++|-++|+.-|...++.+.+ .|+++..+||+++..+|
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r 353 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKER 353 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHH
Confidence 56899999999999988887754 47999999999986543
No 382
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=54.10 E-value=18 Score=28.09 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
+.-+.+|+|+||.|-... ...+.+++.. .+++.-++++|..
T Consensus 94 ~~~kv~ii~~ad~mt~~A--aNaLLK~LEE-Pp~~~~fiL~~~~ 134 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA--ISAFLKVLED-PPQHGVIILTSAK 134 (290)
T ss_pred CCceEEEEechhhcCHHH--HHHHHHHhhc-CCCCeEEEEEeCC
Confidence 667899999999996655 6667777776 6666776666554
No 383
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=54.01 E-value=44 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=24.8
Q ss_pred HHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHh
Q 030396 126 LLALRQSFAE--SLNPPVLIFVQSKDRAKELYGEL 158 (178)
Q Consensus 126 ~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L 158 (178)
...++.++.+ ..+.+++|+|.+.+.++.+-+.|
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~L 49 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELL 49 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 4777777764 24688999999999999999988
No 384
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=53.95 E-value=20 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCCeeEEEEeccccccc--cCCChhhHHHHHhh
Q 030396 37 LSRVEYLVLDEADKLFE--VGNLLKHIDPVVKA 67 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~--~~~~~~~i~~i~~~ 67 (178)
-+..+++|+||||.++. .....+.+..+.+.
T Consensus 635 ~~~~~~~viDEaw~ll~~~~~~~~~~i~~~~r~ 667 (797)
T TIGR02746 635 RKRRKICIIDEAWSLLDGANPQAADFIETGYRR 667 (797)
T ss_pred CCCceEEEEecHHHHhhcccHHHHHHHHHHHHH
Confidence 35678999999999997 33356666666665
No 385
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.87 E-value=38 Score=27.69 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQ 174 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~ 174 (178)
+..+..++..-....++|-++|++-|..+++.+... |..+..+=|||+.
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m 169 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM 169 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH
Confidence 455556666555667999999999999999988654 7899999999864
No 386
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=53.44 E-value=51 Score=31.09 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=29.8
Q ss_pred CCEEEEeCCchHHHHHHHHhhhCCC-ce--EeeecCCCcccc
Q 030396 139 PPVLIFVQSKDRAKELYGELAFDDI-RA--GVIHSDLSQTQV 177 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l~~~L~~~g~-~~--~~lh~~~~~~~R 177 (178)
.+++|||.=+...+-+..-|-+... ++ .-+.|..++.+|
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R 1382 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDR 1382 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHH
Confidence 4799999999999998887755433 33 368888888877
No 387
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.43 E-value=19 Score=30.19 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=18.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
+.-+.+|+||+|.|-..+ .+.+...+..
T Consensus 118 ~~~KVvIIDEad~Lt~~a--~naLLk~LEe 145 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEA--FNALLKTLEE 145 (486)
T ss_pred CCeeEEEEEChhhcCHHH--HHHHHHHHhc
Confidence 566899999999885444 3334444444
No 388
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=53.34 E-value=43 Score=25.58 Aligned_cols=64 Identities=9% Similarity=-0.021 Sum_probs=39.7
Q ss_pred CCCcEEEeCcHH-------------HHHHHHc--CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 14 FSCDILISTPLR-------------LRLAIRR--KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 14 ~~~~Iii~TP~~-------------l~~~l~~--~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.-||+.+-.|+. +.++.+. ..-..+.-+.+|+|+||.|-... ...+..++.. .+++.-+++.
T Consensus 49 ~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~A--ANALLKtLEE-PP~~t~fILi 125 (263)
T PRK06581 49 NNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNA--ANSCLKILED-APKNSYIFLI 125 (263)
T ss_pred CCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHH--HHHHHHhhcC-CCCCeEEEEE
Confidence 458888887763 2222221 11234688999999999996655 5666666666 5555555554
Q ss_pred ee
Q 030396 79 SA 80 (178)
Q Consensus 79 SA 80 (178)
|.
T Consensus 126 t~ 127 (263)
T PRK06581 126 TS 127 (263)
T ss_pred eC
Confidence 43
No 389
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=53.04 E-value=25 Score=30.20 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=28.2
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
....+++|+||+-.+ -.+.+..+++. ++...++|++.
T Consensus 257 ~l~~dvlIiDEaSMv-----d~~l~~~ll~a-l~~~~rlIlvG 293 (586)
T TIGR01447 257 PLPLDVLVVDEASMV-----DLPLMAKLLKA-LPPNTKLILLG 293 (586)
T ss_pred CCcccEEEEcccccC-----CHHHHHHHHHh-cCCCCEEEEEC
Confidence 346789999999888 24567778887 77788877763
No 390
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=53.02 E-value=1.6e+02 Score=25.82 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
...+..++... .+.++|-+.|.+..+.+++.|...---...+.|+.
T Consensus 459 ~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~ 504 (636)
T TIGR03117 459 SLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEK 504 (636)
T ss_pred HHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCC
Confidence 34555555555 67999999999999999999965422334455554
No 391
>PRK07413 hypothetical protein; Validated
Probab=52.87 E-value=45 Score=27.09 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCCCeeEEEEeccccccccCCChh--hHHHHHhhCCCCCceEEEEeec-CcHHHHHHHH
Q 030396 24 LRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLK--HIDPVVKACSNPSIVRSLFSAT-LPDFVEELAR 91 (178)
Q Consensus 24 ~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~--~i~~i~~~~~~~~~q~i~~SAT-~~~~~~~~~~ 91 (178)
+.....+..+..| ++|+||+-..++.+ +.+ .+..+++. .|...-+|+..-. .|+.+.+.+.
T Consensus 295 ~~a~~~i~~g~yd-----lvVLDEi~~Al~~g-li~~eevi~~L~~-rp~~~evVLTGR~~ap~~lie~AD 358 (382)
T PRK07413 295 EIARAAIASGLYK-----TIILDELNPTVDLE-LLPVEPIVQTLLR-KPRDTEVIITGRCKNQPAYFDLAS 358 (382)
T ss_pred HHHHHHHhCCCCC-----EEEEechHHHHHCC-CccHHHHHHHHHh-CCCCCEEEEeCCCCCCHHHHHhCc
No 392
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=52.82 E-value=55 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=34.2
Q ss_pred EEEcCChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHh
Q 030396 116 LVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGEL 158 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L 158 (178)
|++. ....+...++.|+.+. ...+++|.|.+.+.++.|-+.|
T Consensus 6 FYhL-~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 6 IYQT-SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred EEEe-CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4455 5567899999999753 4678999999999999999988
No 393
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.51 E-value=32 Score=27.88 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=22.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
...-+.+|+||+|.|-... ...+...+.. .++...+++.
T Consensus 125 ~~~~kvvIIdea~~l~~~~--~~~LLk~LEe-p~~~t~~Il~ 163 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA--FNAFLKTLEE-PPPHAIFIFA 163 (397)
T ss_pred cCCeEEEEEeChhhCCHHH--HHHHHHHHhc-CCCCeEEEEE
Confidence 4566899999999995433 3333444444 3334444443
No 394
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=52.46 E-value=26 Score=22.36 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHhcCCCCEEEEeCCc-hHHHHHHHHhhhCCCce
Q 030396 130 RQSFAESLNPPVLIFVQSK-DRAKELYGELAFDDIRA 165 (178)
Q Consensus 130 ~~ll~~~~~~~~lIF~~t~-~~~~~l~~~L~~~g~~~ 165 (178)
++.+++. ..+.++.+|+. ...+.+++.|...|+++
T Consensus 23 l~~L~~~-g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 23 LDALRER-GKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHT-TSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHc-CCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 3334433 46777777775 44488999999999875
No 395
>PRK10865 protein disaggregation chaperone; Provisional
Probab=52.36 E-value=20 Score=32.34 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=25.8
Q ss_pred eEEEEeccccccccC--CChhhHHHHHhhCCCCCceEEEEeecCcHHHH
Q 030396 41 EYLVLDEADKLFEVG--NLLKHIDPVVKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 41 ~~lViDE~d~ll~~~--~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
..++|||+|.+...| .-.-+...++...+ .+-.+.+..||-+++.+
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l-~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPAL-ARGELHCVGATTLDEYR 320 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchh-hcCCCeEEEcCCCHHHH
Confidence 489999999998654 11123344444422 23344455566665543
No 396
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=52.35 E-value=53 Score=25.35 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCEEEEeCCchH-----------HHHHHHHhhhCCCceEeeecCCCc
Q 030396 127 LALRQSFAESLNPPVLIFVQSKDR-----------AKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 127 ~~l~~ll~~~~~~~~lIF~~t~~~-----------~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
+.+.++.......+++||++|..+ |-.+|++|...|.++..+--+|+.
T Consensus 114 e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 114 QVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 333334444446778888877666 556788888888888888766654
No 397
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=52.32 E-value=22 Score=25.68 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=28.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
...+++++||...-++.. ....+..+++. +....++++.
T Consensus 134 ~~~~illlDEP~~~LD~~-~~~~l~~~l~~-~~~~~tiIii 172 (197)
T cd03278 134 RPSPFCVLDEVDAALDDA-NVERFARLLKE-FSKETQFIVI 172 (197)
T ss_pred CCCCEEEEeCCcccCCHH-HHHHHHHHHHH-hccCCEEEEE
Confidence 455799999999988877 67777778877 4445554443
No 398
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=52.02 E-value=14 Score=24.80 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCeeEEEEeccccccccC---------CChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVG---------NLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~---------~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
.+..++|+||++.+.... .....+..+... .....-++++.+..+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecC
Confidence 467899999999886442 123445555555 333333444444443
No 399
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=51.35 E-value=15 Score=33.78 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=33.1
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
....++++||.|.-++.. ....+..++.. +....|++++|.-
T Consensus 1095 ~~~~~~~lDE~~~~ld~~-~~~~~~~~l~~-~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGV-NVERVAKLIRE-KAGEAQFIVVSLR 1136 (1164)
T ss_pred CCCCcEEecccccccCHH-HHHHHHHHHHH-hcCCCeEEEEECc
Confidence 466899999999999987 67777778887 5567888876554
No 400
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=51.34 E-value=37 Score=29.79 Aligned_cols=68 Identities=22% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCcEEEeCcHHHHH-HHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC-cHHHHHHHH
Q 030396 14 FSCDILISTPLRLRL-AIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL-PDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~-~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~-~~~~~~~~~ 91 (178)
.+.+||++|++.+.. .+.. -.--.+|+||||.+-+.. .. ....+-. +....+..+ ++|- -..++++..
T Consensus 233 ~~~dVVltTy~il~~~~l~~-----i~w~Riildea~~ikn~~--tq-~~~a~~~-L~a~~RWcL-tgtPiqn~~~~lys 302 (674)
T KOG1001|consen 233 NSYDVVLTTYDILKNSPLVK-----IKWLRIVLDEAHTIKNKD--TQ-IFKAVCQ-LDAKYRWCL-TGTPIQNNLDELYS 302 (674)
T ss_pred cCCceEEeeHHHhhcccccc-----eeEEEEEeccccccCCcc--hH-hhhhhee-eccceeeee-cCChhhhhHHHHHH
Confidence 467899999987764 2211 122356999999996655 22 2222222 444555444 4443 334444433
No 401
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=51.33 E-value=17 Score=27.07 Aligned_cols=141 Identities=12% Similarity=0.186 Sum_probs=72.9
Q ss_pred CCcEEE---eCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC---CChhhHH-HHHhhCCCCCceEEEEeecC-cH--
Q 030396 15 SCDILI---STPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG---NLLKHID-PVVKACSNPSIVRSLFSATL-PD-- 84 (178)
Q Consensus 15 ~~~Iii---~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~---~~~~~i~-~i~~~~~~~~~q~i~~SAT~-~~-- 84 (178)
.+.|.+ +||..+.+.+.+..++++++.++-.||=- +..+ +....++ .+++.+.-+..++..+.... ++
T Consensus 29 ~~~lalsGGstp~~~y~~L~~~~i~w~~v~~f~~DER~--Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~ 106 (233)
T TIGR01198 29 QFSLALSGGRSPIALLEALAAQPLDWSRIHLFLGDERY--VPLDHADSNTGLAREALLDRVAIPASNIHPMPTELSDIEE 106 (233)
T ss_pred cEEEEECCCccHHHHHHHHhhCCCCcceEEEEEecccc--cCCCCccchHHHHHHHHhccCCCChhheeeCCCccCCHHH
Confidence 455665 37888989888778999999999999954 3332 2333333 34455211344555554333 11
Q ss_pred HH---HHHHHHhcc-------CcEEEEEcCCccccC---------CceEEEEEcCC----hhhHHHHHHHHHHhcCCCCE
Q 030396 85 FV---EELARSIMH-------DAVRVIVGRKNTASE---------SIKQKLVFAGS----EEGKLLALRQSFAESLNPPV 141 (178)
Q Consensus 85 ~~---~~~~~~~~~-------~~~~v~~~~~~~~~~---------~i~~~~~~~~~----~~~k~~~l~~ll~~~~~~~~ 141 (178)
.+ .+.+...+. |-..+-++.++.+.. .-...+..... ...++..-...|... +++
T Consensus 107 ~a~~y~~~i~~~~~~~~~p~fDl~lLGmG~DGHtASlFPg~~~l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a--~~i 184 (233)
T TIGR01198 107 AAELYEQELAAAFQPIVFPVFDLLLLGMGPDGHTASLFPHTPALQETERLVTVLTKSPKPPHERITLTLPAINAA--RKV 184 (233)
T ss_pred HHHHHHHHHHHhhcccCCCcccEEEECCcCCccceeCCCCChhhccccceEEeecCCCCCCCCcEEecHHHHhcC--CeE
Confidence 11 223333322 223333333322111 11111211111 123444444555443 677
Q ss_pred EEEeCCchHHHHHHHHhh
Q 030396 142 LIFVQSKDRAKELYGELA 159 (178)
Q Consensus 142 lIF~~t~~~~~~l~~~L~ 159 (178)
++.+...+.++.+.+.+.
T Consensus 185 ~~lv~G~~Ka~~~~~~l~ 202 (233)
T TIGR01198 185 FLLIAGEEKRNALAEALA 202 (233)
T ss_pred EEEEEChHHHHHHHHHHh
Confidence 777888888888888886
No 402
>PRK06921 hypothetical protein; Provisional
Probab=51.23 E-value=23 Score=27.07 Aligned_cols=70 Identities=16% Similarity=0.038 Sum_probs=37.7
Q ss_pred CCcEEEeCcHHHHHHHHcC------C-CCCCCeeEEEEecccc-cccc----CCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 15 SCDILISTPLRLRLAIRRK------K-IDLSRVEYLVLDEADK-LFEV----GNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~------~-~~~~~l~~lViDE~d~-ll~~----~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
+..++..|...+...+... . -.+.+.++||||+++. +-.. ......+..|+.........+ ++|+.+
T Consensus 146 g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~t-Iitsn~ 224 (266)
T PRK06921 146 GVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPI-LISSEL 224 (266)
T ss_pred CceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCE-EEECCC
Confidence 6677777765554433211 0 1256789999999965 1111 101345666666633333444 556666
Q ss_pred cHH
Q 030396 83 PDF 85 (178)
Q Consensus 83 ~~~ 85 (178)
++.
T Consensus 225 ~~~ 227 (266)
T PRK06921 225 TID 227 (266)
T ss_pred CHH
Confidence 544
No 403
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.07 E-value=22 Score=29.92 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.2
Q ss_pred CCCeeEEEEeccccccc
Q 030396 37 LSRVEYLVLDEADKLFE 53 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~ 53 (178)
...-+.+|+||+|.+-.
T Consensus 114 ~~~~kVVIIDEad~ls~ 130 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK 130 (504)
T ss_pred cCCCeEEEEECccccCH
Confidence 35678999999998743
No 404
>PRK09087 hypothetical protein; Validated
Probab=50.96 E-value=24 Score=26.21 Aligned_cols=40 Identities=8% Similarity=-0.028 Sum_probs=25.0
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..+++|++|.+- . ....+..+++.+.....+ ++++|+.++
T Consensus 89 ~~l~iDDi~~~~--~-~~~~lf~l~n~~~~~g~~-ilits~~~p 128 (226)
T PRK09087 89 GPVLIEDIDAGG--F-DETGLFHLINSVRQAGTS-LLMTSRLWP 128 (226)
T ss_pred CeEEEECCCCCC--C-CHHHHHHHHHHHHhCCCe-EEEECCCCh
Confidence 579999999872 2 356677777763334555 455555443
No 405
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=50.64 E-value=17 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
..-+.+|+||+|.|-... ...+...+.. .+....+++.
T Consensus 120 ~~~kvvIIdead~lt~~~--~n~LLk~lEe-p~~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA--FNSLLKTLEE-PPQHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCHHH--HHHHHHHhhc-CCCCceEEEE
Confidence 456789999999885433 3344444444 3444444443
No 406
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=50.44 E-value=21 Score=31.70 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=27.2
Q ss_pred eEEEEeccccccccCC---ChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 41 EYLVLDEADKLFEVGN---LLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~---~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
..++|||+|.++..|. -..++..+++.++. ...+.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHH
Confidence 5899999999986551 13445555665333 334455556666543
No 407
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=50.42 E-value=29 Score=30.01 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCc-hHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSK-DRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~-~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+.+...+.-+.-....++||||++- ..+-.++-.|+..|+ ++..+.||++
T Consensus 67 ~~l~~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~ 118 (610)
T PRK09629 67 ADLEQLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL 118 (610)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH
Confidence 3444444444444567899999865 467788888899998 6889999864
No 408
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=50.14 E-value=41 Score=23.57 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhcCCCC-EEEEe-CCchHHHHHHHHhhhCCCceEee
Q 030396 123 EGKLLALRQSFAESLNPP-VLIFV-QSKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~-~lIF~-~t~~~~~~l~~~L~~~g~~~~~l 168 (178)
..++..+.++-++...++ .|-|| .-.++|..+++.|+..|+.+...
T Consensus 40 ~tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 40 LTRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred cchHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 357788888888887777 67798 77899999999999999865543
No 409
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=50.13 E-value=19 Score=28.26 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.5
Q ss_pred CCeeEEEEeccccccccC
Q 030396 38 SRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~ 55 (178)
..-+.+|+||+|.+-...
T Consensus 116 ~~~~vviidea~~l~~~~ 133 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSA 133 (355)
T ss_pred CCceEEEEeChhhcCHHH
Confidence 455799999999885433
No 410
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.93 E-value=21 Score=29.78 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=13.8
Q ss_pred CCeeEEEEeccccccccC
Q 030396 38 SRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~ 55 (178)
++-+.+|+||+|.+-...
T Consensus 116 ~~~kVvIIDE~h~Lt~~a 133 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEA 133 (472)
T ss_pred CCeEEEEEEChHHhHHHH
Confidence 456799999999995433
No 411
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.80 E-value=38 Score=26.79 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=69.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH-HHHHHHHh--ccCcEEEEEcCCccccCCceE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF-VEELARSI--MHDAVRVIVGRKNTASESIKQ 114 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~-~~~~~~~~--~~~~~~v~~~~~~~~~~~i~~ 114 (178)
.+.+.+..|||=.-++.. .-..+..+++. ++...-+-++=-|-..+ ++.++.+. +..-..+..+. +.+
T Consensus 158 ~~P~iLL~DEaTSALDP~-TT~sIL~LL~~-In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~-------v~~ 228 (339)
T COG1135 158 NNPKILLCDEATSALDPE-TTQSILELLKD-INRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT-------VSE 228 (339)
T ss_pred cCCCEEEecCccccCChH-HHHHHHHHHHH-HHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc-------HHH
Confidence 577899999999999998 77777777777 44333222222343333 33444432 22222222221 111
Q ss_pred EEEEcCChhhHHHHHHHHHHh---------------cCCCC--EEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 115 KLVFAGSEEGKLLALRQSFAE---------------SLNPP--VLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 115 ~~~~~~~~~~k~~~l~~ll~~---------------~~~~~--~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.|.+ + |.....+++.. ....+ -+.|..+....--+++..++.|..+-.+||+++.
T Consensus 229 vF~~--P---k~~~t~~fi~~~~~~~~~~~~~~~l~~~~~~~~rl~f~g~~~~~plis~~~~~~~v~~nIl~G~I~~ 300 (339)
T COG1135 229 VFAN--P---KHAITQEFIGETLEIDLPEELLERLESGDGPLLRLTFTGESADQPLLSEVARRFGVDVNILSGNIDE 300 (339)
T ss_pred hhcC--c---chHHHHHHHHhhccccCcHHHHhhhccCCceEEEEEecCccccchHHHHHHHHhCCceEEEecchhh
Confidence 1211 1 11112222211 22233 4568888888888888888999999999999865
No 412
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=49.30 E-value=25 Score=30.07 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=34.6
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~ 176 (178)
.+.++|.+++++-++.-...|...|+++..+||+++..+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~ 91 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKE 91 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 467899999999999999999999999999999987654
No 413
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=49.27 E-value=44 Score=28.95 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~~R 177 (178)
..+++|-++|+.-|+..++.+.+ .|+++..++|+++..+|
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r 327 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRR 327 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHH
Confidence 56899999999999988877754 47999999999986553
No 414
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.02 E-value=40 Score=27.72 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCcc
Q 030396 139 PPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQT 175 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~~ 175 (178)
.+++|.|+|++-|..+++.+... ++.+..++|+.+..
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~ 114 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMG 114 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChH
Confidence 47999999999999999887642 67899999998753
No 415
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=48.48 E-value=27 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=29.9
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
..+++++||...-++.. ....+..++..+.....++++.|-
T Consensus 177 ~p~~lllDEPt~~LD~~-~~~~l~~~i~~~~~~g~~vi~isH 217 (247)
T cd03275 177 PAPFFVLDEVDAALDNT-NVGKVASYIREQAGPNFQFIVISL 217 (247)
T ss_pred CCCEEEEecccccCCHH-HHHHHHHHHHHhccCCcEEEEEEC
Confidence 46899999999998887 677777777773333566666543
No 416
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=48.47 E-value=27 Score=31.46 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=27.2
Q ss_pred CeeEEEEeccccccccCCC--hhhHHHHHhhCCCCCceEEEEeecCcHHHH
Q 030396 39 RVEYLVLDEADKLFEVGNL--LKHIDPVVKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~--~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
.-..++|||+|.+...|.. ..+...++...+ ..-.+.++.||-+++.+
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARGELHCIGATTLDEYR 315 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcCceEEEEeCcHHHHH
Confidence 3469999999999864411 123344454422 33344555666665543
No 417
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=48.43 E-value=26 Score=26.26 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
...+++++||...-++.. ....+..+++. +....++++.|-.
T Consensus 187 ~~~~illlDEPt~~ld~~-~~~~~~~~l~~-~~~g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLS-HTQNIGRMIKT-HFKGSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHH-HHHHHHHHHHH-HcCCCEEEEEECC
Confidence 456899999999988877 67777777777 4456777776655
No 418
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.37 E-value=24 Score=30.55 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
.+.-+.+||||+|.|-... ...+...+.. .+...-+ ++.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~~a--~naLLK~LEe-pp~~tif-IL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA--FNAFLKTLEE-PPSYAIF-ILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCHHH--HHHHHHHHhC-CCCCeEE-EEEeCC
Confidence 4566899999999995544 4455555555 4444443 444443
No 419
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=48.28 E-value=24 Score=25.64 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+.+++++||.-.-++.. ....+..+++. +... .+++++..-+..+...
T Consensus 149 ~~~p~llllDEP~~~LD~~-~~~~l~~~l~~-~~~~-~tii~~sH~~~~~~~~ 198 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPA-SRRAIWDLILE-VRKG-RSIILTTHSMDEAEAL 198 (220)
T ss_pred hcCCCEEEECCCCCCCCHH-HHHHHHHHHHH-HhcC-CEEEEEcCCHHHHHHh
Confidence 5678999999999998887 77888888877 4444 5566655555444443
No 420
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=48.17 E-value=34 Score=25.16 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=23.3
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
.++|+|||-.+ ...++..++.+ ...+..++++.
T Consensus 121 ~~iIvDEaQN~-----t~~~~k~ilTR-~g~~skii~~G 153 (205)
T PF02562_consen 121 AFIIVDEAQNL-----TPEELKMILTR-IGEGSKIIITG 153 (205)
T ss_dssp EEEEE-SGGG-------HHHHHHHHTT-B-TT-EEEEEE
T ss_pred eEEEEecccCC-----CHHHHHHHHcc-cCCCcEEEEec
Confidence 79999999877 56779999999 77778877763
No 421
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=48.07 E-value=82 Score=21.53 Aligned_cols=46 Identities=15% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHHHHHHHhc----CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 127 LALRQSFAES----LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 127 ~~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
..+.++++.+ ..+++.|+-.|..-.+-++..|.+.|..+...|+..
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 3444555543 366799999999999999999999999999999643
No 422
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=48.07 E-value=98 Score=21.97 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=51.3
Q ss_pred EEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH-HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC
Q 030396 43 LVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF-VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS 121 (178)
Q Consensus 43 lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~ 121 (178)
.|+|-...-+ .+.+.+..|++.+......+.+.|-|-.++ .++.++.+.-+ ............-.+.... +
T Consensus 35 ~v~D~~g~~v---~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~----~~~~~~~~~~~~F~~~eI~-~ 106 (169)
T PF12689_consen 35 VVVDSRGEEV---SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID----DADGDGVPLIEYFDYLEIY-P 106 (169)
T ss_dssp -EEETT--EE------TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C--------------CCECEEEES-S
T ss_pred EEEeCCCCEE---EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC----ccccccccchhhcchhhee-c
Confidence 3455444433 488999999998544677878888786554 44555554323 1111111222222222122 2
Q ss_pred hhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcc
Q 030396 122 EEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQT 175 (178)
Q Consensus 122 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~ 175 (178)
. .|..=+..+.++. ....+|.|=+-....+.+. ..|..+.....||+.+
T Consensus 107 g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~----~lGV~~v~v~~Glt~~ 157 (169)
T PF12689_consen 107 G-SKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVS----KLGVTCVLVPDGLTWD 157 (169)
T ss_dssp S--HHHHHHHHHHHH---GGGEEEEES-HHHHHHHH----TTT-EEEE-SSS--HH
T ss_pred C-chHHHHHHHHHhcCCChhHEEEecCchhcceeeE----ecCcEEEEeCCCCCHH
Confidence 2 4666666666543 2445555555555444433 3788888888887643
No 423
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.02 E-value=25 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=12.9
Q ss_pred CCCeeEEEEeccccccc
Q 030396 37 LSRVEYLVLDEADKLFE 53 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~ 53 (178)
...-+++++||+|.+..
T Consensus 106 ~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS 122 (367)
T ss_pred cCCcEEEEEeChhhcCH
Confidence 34567899999998744
No 424
>PRK14701 reverse gyrase; Provisional
Probab=47.98 E-value=53 Score=32.05 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh------CCCceEeeecCCCccc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF------DDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~------~g~~~~~lh~~~~~~~ 176 (178)
...+++|.++|++-+...++.|.. .+..+..+||+++..+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e 166 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKE 166 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHH
Confidence 356899999999999999998876 3568899999998654
No 425
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.72 E-value=33 Score=29.42 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
...-+.+||||+|.|-... .+.+...+.. .+.... +++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a--~naLLk~LEe-pp~~tv-~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA--FNALLKTLEE-PPPHAI-FILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH--HHHHHHHHhc-CCCCeE-EEEEeC
Confidence 3567899999999885544 3334444444 333333 333344
No 426
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.70 E-value=26 Score=30.32 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=18.1
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
.+-+.+||||+|.|-... ...+...+..
T Consensus 120 ~~~KViIIDEad~Lt~~a--~naLLK~LEe 147 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA--FNALLKTLEE 147 (620)
T ss_pred CCceEEEEECccccCHHH--HHHHHHHHhc
Confidence 556899999999995433 3334444443
No 427
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=47.54 E-value=26 Score=25.63 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=31.6
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+.+++||...=++.. ....+...++. +....+++++|
T Consensus 149 ~p~ililDEPt~gLD~~-~~~~l~~~l~~-~~~~~~~iivs 187 (212)
T cd03274 149 PTPLYVMDEIDAALDFR-NVSIVANYIKE-RTKNAQFIVIS 187 (212)
T ss_pred CCCEEEEcCCCcCCCHH-HHHHHHHHHHH-HcCCCEEEEEE
Confidence 46899999999998887 77888888888 56667777777
No 428
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=47.47 E-value=8.5 Score=34.97 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCCcEEEeCcHHHH-HHHHcCC------CCCCCeeEEEEecccccc
Q 030396 14 FSCDILISTPLRLR-LAIRRKK------IDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 14 ~~~~Iii~TP~~l~-~~l~~~~------~~~~~l~~lViDE~d~ll 52 (178)
=.|||..||..-+- +.|+.+. .-.....+-|+||+|.++
T Consensus 226 Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 226 YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 36999999998765 5565432 124778899999999975
No 429
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=47.33 E-value=83 Score=24.85 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
...-+.+|+|++|.|-... ...+...+.. .+....+++.|
T Consensus 111 ~~~~kV~iiEp~~~Ld~~a--~naLLk~LEe-p~~~~~~Ilvt 150 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQA--ANSLLKVLEE-PPPQVVFLLVS 150 (325)
T ss_pred cCCceEEEEechhhCCHHH--HHHHHHHHHh-CcCCCEEEEEe
Confidence 3677899999999995544 6667777777 45444444433
No 430
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=47.26 E-value=21 Score=27.71 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCchHHHHHHHHhhhCCCceEeeecCCCcc
Q 030396 146 QSKDRAKELYGELAFDDIRAGVIHSDLSQT 175 (178)
Q Consensus 146 ~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~ 175 (178)
.|..-|++|++.|++.|+.+...|.+|..+
T Consensus 255 RSV~iae~La~~L~~~~~~v~v~HRdl~k~ 284 (284)
T PF03668_consen 255 RSVAIAERLAERLREKGYTVVVRHRDLEKN 284 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcceEEcCCCCCC
Confidence 789999999999999999999999998753
No 431
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=47.12 E-value=28 Score=31.30 Aligned_cols=39 Identities=26% Similarity=0.155 Sum_probs=28.3
Q ss_pred eEEEEeccccccc--------cCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 41 EYLVLDEADKLFE--------VGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 41 ~~lViDE~d~ll~--------~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
..+||||+|+-=+ ......-+..+-+. + ++.+++..|||
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~-L-P~ARVVYASAT 453 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKK-L-PNARVVYASAT 453 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHh-C-CCceEEEeecc
Confidence 4789999999733 11456667777776 3 57888999998
No 432
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=46.91 E-value=45 Score=20.58 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=19.3
Q ss_pred CCCEEEEeC------CchHHHHHHHHhhhCCCceEee
Q 030396 138 NPPVLIFVQ------SKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 138 ~~~~lIF~~------t~~~~~~l~~~L~~~g~~~~~l 168 (178)
..+++||+. ...-|..+.+.|.+.|++...+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~i 43 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTF 43 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEE
Confidence 457777765 4556667777777776654433
No 433
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=46.71 E-value=48 Score=25.45 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=39.1
Q ss_pred EcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 118 FAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 118 ~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.|..-..|...|...|...+-.-.+-=||--++=+.++..|.+.|+++...+|.-..
T Consensus 48 ~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~e 104 (268)
T PF05221_consen 48 GCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDE 104 (268)
T ss_dssp EES--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HH
T ss_pred EEEechHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHH
Confidence 355556899999999998843334445566788889999999999999999997543
No 434
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=46.63 E-value=19 Score=27.84 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCc-eEEEEeecCcHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSI-VRSLFSATLPDFVEELAR 91 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~-q~i~~SAT~~~~~~~~~~ 91 (178)
..+.+++++||--.=++.. ....+..+++. +...- .++++|.....++...+.
T Consensus 152 ~~~P~lliLDEPt~GLDp~-~~~~~~~~l~~-l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 152 LHDPELLILDEPTSGLDPE-SRREIWELLRE-LAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred hcCCCEEEECCCCcCCCHH-HHHHHHHHHHH-HHhCCCcEEEEeCCcHHHHHHhCC
Confidence 5778999999998877877 67888888888 55544 689999988888777644
No 435
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.62 E-value=29 Score=28.76 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQT 175 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~ 175 (178)
.+.+||.+++++-++.....|...|+++..++|+.+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~ 88 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKE 88 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 46799999999999999999999999999999987755
No 436
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=46.61 E-value=29 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCCcEEEeCcHHHH---HHHHcCCCCCCCeeEEEEeccccccc
Q 030396 14 FSCDILISTPLRLR---LAIRRKKIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 14 ~~~~Iii~TP~~l~---~~l~~~~~~~~~l~~lViDE~d~ll~ 53 (178)
++.+|+|++=.-+. +.+.+..++ |.|+||=|.+=+
T Consensus 1077 ~~~~iiVtSYDv~RnD~d~l~~~~wN-----YcVLDEGHVikN 1114 (1549)
T KOG0392|consen 1077 KNANIIVTSYDVVRNDVDYLIKIDWN-----YCVLDEGHVIKN 1114 (1549)
T ss_pred cccceEEeeHHHHHHHHHHHHhcccc-----eEEecCcceecc
Confidence 35789988876655 233334344 899999999843
No 437
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=46.55 E-value=24 Score=32.36 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=29.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
.-.+++|+||+|.|=+. ...+...+.. +...+++++....+-+.+
T Consensus 820 pGPD~vVCDE~HiLKNe---ksa~Skam~~-irtkRRI~LTGTPLQNNL 864 (1567)
T KOG1015|consen 820 PGPDFVVCDEGHILKNE---KSAVSKAMNS-IRTKRRIILTGTPLQNNL 864 (1567)
T ss_pred CCCCeEEecchhhhccc---hHHHHHHHHH-HHhheeEEeecCchhhhh
Confidence 34589999999998543 4666677776 566677665544454443
No 438
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=46.13 E-value=37 Score=30.02 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=26.8
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
...+++|+|||+.+- ...+..+++. .+...+++++.
T Consensus 415 ~~~~llIvDEaSMvd-----~~~~~~Ll~~-~~~~~rlilvG 450 (720)
T TIGR01448 415 IDCDLLIVDESSMMD-----TWLALSLLAA-LPDHARLLLVG 450 (720)
T ss_pred ccCCEEEEeccccCC-----HHHHHHHHHh-CCCCCEEEEEC
Confidence 457899999999983 3456777777 66777877763
No 439
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=46.13 E-value=29 Score=29.24 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=14.3
Q ss_pred CCCeeEEEEeccccccccC
Q 030396 37 LSRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~ 55 (178)
..+-+.+|+||+|.|-...
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a 144 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGA 144 (507)
T ss_pred cCCcEEEEEEChhhcCHHH
Confidence 3566899999999885433
No 440
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.00 E-value=21 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.8
Q ss_pred CCCeeEEEEeccccccccC
Q 030396 37 LSRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~ 55 (178)
.++-+.+||||+|.|-...
T Consensus 117 ~~ryKVyiIDEvHMLS~~a 135 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQA 135 (515)
T ss_pred cccceEEEEecHHhhhHHH
Confidence 5778999999999996555
No 441
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=45.94 E-value=83 Score=21.89 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=50.0
Q ss_pred ChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChh--hHHHHHHHH--
Q 030396 57 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEE--GKLLALRQS-- 132 (178)
Q Consensus 57 ~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~--~k~~~l~~l-- 132 (178)
+.+...+.++.+...+..++++||+...-++..++.+.-+...+...... ...+..... .+.... .|...+..+
T Consensus 90 ~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~-~~~~~~~~~-~~~~~~~~~K~~~l~~~~~ 167 (192)
T PF12710_consen 90 FIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELF-DNGGGIFTG-RITGSNCGGKAEALKELYI 167 (192)
T ss_dssp CHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEE-CTTCCEEEE-EEEEEEESHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeee-ecccceeee-eECCCCCCcHHHHHHHHHH
Confidence 34334455444234588999999997666777766544343112111111 111111111 111111 588888887
Q ss_pred -HH-hcCCCCEEEEeCCchHHHHH
Q 030396 133 -FA-ESLNPPVLIFVQSKDRAKEL 154 (178)
Q Consensus 133 -l~-~~~~~~~lIF~~t~~~~~~l 154 (178)
-. .....+++.+-++..+...+
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~~l 191 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLPML 191 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHHHH
T ss_pred HhhcCCCCCeEEEEECCHHHHHHh
Confidence 22 34467788888887776543
No 442
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=45.87 E-value=89 Score=24.39 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhc-----C--CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCccc
Q 030396 123 EGKLLALRQSFAES-----L--NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 123 ~~k~~~l~~ll~~~-----~--~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~ 176 (178)
+.|+..|.++++.. . .-+++|.+++.+..+-+..+|.-.+++..-+.|++...+
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~ 155 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDE 155 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCc
Confidence 46888888888755 2 346999999999999999999999999888888766554
No 443
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.71 E-value=67 Score=26.40 Aligned_cols=57 Identities=5% Similarity=-0.175 Sum_probs=46.2
Q ss_pred EcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 118 FAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 118 ~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+..-..|...|...|....-.-.+--||.-+.=+.++..|.+.|+++...+|.-..
T Consensus 41 ~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~ 97 (413)
T cd00401 41 GCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLE 97 (413)
T ss_pred EEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHH
Confidence 344556789999999998855567777888888899999999999999999987543
No 444
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=45.69 E-value=27 Score=25.34 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCeeEEEEeccccccccCCChh-hHHHHHhhCCCC--CceEEEEee
Q 030396 38 SRVEYLVLDEADKLFEVGNLLK-HIDPVVKACSNP--SIVRSLFSA 80 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~-~i~~i~~~~~~~--~~q~i~~SA 80 (178)
.+.+++++||...-++.. ... .+..++.. ... ..++++.|-
T Consensus 138 ~~p~illlDEP~~~LD~~-~~~~~l~~~l~~-~~~~~~~~iiiitH 181 (204)
T cd03240 138 SNCGILALDEPTTNLDEE-NIEESLAEIIEE-RKSQKNFQLIVITH 181 (204)
T ss_pred cCCCEEEEcCCccccCHH-HHHHHHHHHHHH-HHhccCCEEEEEEe
Confidence 577899999999998887 566 77777777 433 456555444
No 445
>PRK04841 transcriptional regulator MalT; Provisional
Probab=45.68 E-value=28 Score=31.15 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..--.+|+|++|.+-+.. ..+.+..+++. .+.+..+++.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~-~~~~l~~l~~~-~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPE-IHEAMRFFLRH-QPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChH-HHHHHHHHHHh-CCCCeEEEEEeCCCCC
Confidence 445689999999985444 67788888998 7888888887766543
No 446
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=45.63 E-value=31 Score=28.71 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 34 KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 34 ~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
..+=.+..++|+||+|.+-+.. ..+.+..=... ..+.+++..
T Consensus 118 ~~dG~~~~~~i~DE~h~~~~~~-~~~~l~~g~~~--r~~pl~~~I 159 (477)
T PF03354_consen 118 SLDGLNPSLAIFDELHAHKDDE-LYDALESGMGA--RPNPLIIII 159 (477)
T ss_pred CccCCCCceEEEeCCCCCCCHH-HHHHHHhhhcc--CCCceEEEE
Confidence 3444567899999999995433 23333332222 245666555
No 447
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.51 E-value=30 Score=23.67 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
...+++++||...=++.. ....+.+++.. .....++++++..-...+..
T Consensus 97 ~~~~i~ilDEp~~~lD~~-~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPA-SRERLLELLRE-LAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHH-HHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHH
Confidence 346899999999988876 67777777766 33333455555555444333
No 448
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=45.38 E-value=15 Score=26.53 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=33.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+++++||.-.-++.. ....+..+++. +.....+++++..-...+..
T Consensus 150 ~~~p~llllDEPt~~LD~~-~~~~~~~~l~~-~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPA-GRRELLELLKK-LKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred hcCCCEEEEcCCcccCCHH-HHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHH
Confidence 4677899999999988887 67777777776 33333456665555544443
No 449
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.07 E-value=55 Score=27.03 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCeeEEEEeccccccccC-------CChhhHHHHHhhC---CCCCceEEEEeecCcHH-HHHHHHHhccCcE
Q 030396 38 SRVEYLVLDEADKLFEVG-------NLLKHIDPVVKAC---SNPSIVRSLFSATLPDF-VEELARSIMHDAV 98 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~-------~~~~~i~~i~~~~---~~~~~q~i~~SAT~~~~-~~~~~~~~~~~~~ 98 (178)
....++.+||+|.++... +-.-..+.+++.. ...+-++++++||--++ +.+-+.+.+....
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~ 315 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRL 315 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhcee
Confidence 455678899999998543 1222233333332 22445788888986554 5555554444433
No 450
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=45.02 E-value=19 Score=26.76 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+.+++++||.-.-++.. ....+..++.. +.....+++++..-...+..+
T Consensus 160 ~~~p~lllLDEPt~~LD~~-~~~~l~~~l~~-~~~~~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPE-LVGEVLNTIRQ-LAQEKRTMVIVTHEMSFARDV 210 (250)
T ss_pred hcCCCEEEEeCCCccCCHH-HHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHh
Confidence 3677899999999988887 67777777776 333334556654444444443
No 451
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.72 E-value=44 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..+.-++|+|..|.+-+.. ....++.++++ .|++.+.++.|=+-|+
T Consensus 127 ~~~pl~LVlDDyHli~~~~-l~~~l~fLl~~-~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 127 YEGPLYLVLDDYHLISDPA-LHEALRFLLKH-APENLTLVVTSRSRPQ 172 (894)
T ss_pred hcCceEEEeccccccCccc-HHHHHHHHHHh-CCCCeEEEEEeccCCC
Confidence 4456799999999998877 88889999999 9999998888877664
No 452
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=44.59 E-value=28 Score=24.16 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+.+++||.-.=++.. ....+..+++. +..+..+++++..-...+.+
T Consensus 98 ~~~p~illlDEP~~~LD~~-~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 98 ARNARLLILDEPTAALTPA-EVERLFKVIRR-LRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred hcCCCEEEEECCCcCCCHH-HHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHH
Confidence 4566899999999888877 77778777776 33333455554444433444
No 453
>PRK13766 Hef nuclease; Provisional
Probab=44.52 E-value=72 Score=28.27 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=32.6
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhC-C---CceEeeecCCCcccc
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFD-D---IRAGVIHSDLSQTQV 177 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~-g---~~~~~lh~~~~~~~R 177 (178)
...+++||.|+|+.-+++.++.+.+. + .++..++|+.+..+|
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r 101 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKR 101 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHH
Confidence 34678999999999998877777553 3 388899999887655
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.46 E-value=20 Score=25.86 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+.+++++||.-.-++.. ....+..+++. ......+++++..-...+...
T Consensus 144 ~~~p~~lllDEP~~~LD~~-~~~~~~~~l~~-~~~~~~tii~~sH~~~~~~~~ 194 (210)
T cd03269 144 IHDPELLILDEPFSGLDPV-NVELLKDVIRE-LARAGKTVILSTHQMELVEEL 194 (210)
T ss_pred hcCCCEEEEeCCCcCCCHH-HHHHHHHHHHH-HHHCCCEEEEECCCHHHHHHh
Confidence 4677899999999988887 67777777776 333333555544444444443
No 455
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=44.44 E-value=25 Score=27.37 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.+.-+.+|+|++|.|-... .+.+...+.. .+...-+++.
T Consensus 91 ~~~~kv~iI~~ad~m~~~a--~naLLK~LEe-pp~~t~~il~ 129 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA--QNAFLKTIEE-PPKGVFIILL 129 (313)
T ss_pred cCCceEEEEechhhcCHHH--HHHHHHHhcC-CCCCeEEEEE
Confidence 3566888999998885444 4444444444 4444444443
No 456
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=44.43 E-value=65 Score=25.15 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=28.0
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
+.-+.+|+|++|.|-... ...+..++.. .|+..-+++.+.
T Consensus 89 ~~~KvvII~~~e~m~~~a--~NaLLK~LEE-Pp~~t~~il~~~ 128 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSL--LNALLKTIEE-PPKDTYFLLTTK 128 (299)
T ss_pred CCceEEEEecccccCHHH--HHHHHHHhhC-CCCCeEEEEEeC
Confidence 578999999999995544 5556666666 666666665544
No 457
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=44.42 E-value=27 Score=24.63 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=34.0
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+.+++||.-.-++.. ....+..++.. +.....++++++.-...+..
T Consensus 120 ~~~p~llllDEP~~~LD~~-~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVG-AKAEIYRLIRE-LADAGKAVLLISSELDELLG 169 (182)
T ss_pred ccCCCEEEECCCCcCCCHH-HHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHH
Confidence 5677899999999988887 77777777776 33333455555544444444
No 458
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=44.24 E-value=19 Score=26.06 Aligned_cols=49 Identities=10% Similarity=0.000 Sum_probs=33.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCC--CceEEEEeecCcHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNP--SIVRSLFSATLPDFV 86 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~--~~q~i~~SAT~~~~~ 86 (178)
..+.+++++||...-++.. ....+..++...... ..+++++|+.-...+
T Consensus 129 ~~~p~illlDEP~~glD~~-~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMV-NRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred ccCCCEEEecCcccccCHH-HHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 3677899999999998887 666666666552232 457777766544443
No 459
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.19 E-value=57 Score=24.63 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.++++..+..+..|||.+...+.-+...|.+.|+.
T Consensus 177 ~~~~~~~l~~~~~~~~~I~~~~d~~a~g~~~al~~~g~~ 215 (288)
T cd01538 177 QKRMENALTANYNKVDGVLAANDGTAGGAIAALKAAGLA 215 (288)
T ss_pred HHHHHHHHHhCCCCccEEEeCCcHHHHHHHHHHHHcCCC
Confidence 456667777764468999999999999999999999875
No 460
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.09 E-value=23 Score=24.92 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=34.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCC-ceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPS-IVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~-~q~i~~SAT~~~~~~~ 88 (178)
..+.+++++||--.=++.. ....+..+++. +..+ ..++++++.-+..+..
T Consensus 116 ~~~p~llilDEP~~~LD~~-~~~~l~~~l~~-~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPI-TRREVRALLKS-LQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HCCCCEEEEeCCcccCCHH-HHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHH
Confidence 4677899999999988887 67777777777 3333 3566666655544443
No 461
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=44.01 E-value=17 Score=32.10 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=23.1
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
...++|+||||.+++...+.+.+..+.+.
T Consensus 629 ~~~~i~iDEa~~ll~~~~~~~~i~~~~r~ 657 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGNPVFAAKIRDWLKT 657 (785)
T ss_pred CCeEEEEechhhhcCCHHHHHHHHHHHHH
Confidence 56789999999999754467777777777
No 462
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=43.90 E-value=48 Score=25.54 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=25.2
Q ss_pred eEEEEeccccccccC---CChh-hHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 41 EYLVLDEADKLFEVG---NLLK-HIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 41 ~~lViDE~d~ll~~~---~~~~-~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..++|||+|.|...+ .+.. .+..+++.+-.....++++.||.++.+..
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 678999999884221 1223 33444554212223445555776654443
No 463
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=43.89 E-value=45 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
++-+.+|+||||.|-... ...+...+.. .+....+|+ .+|-+.
T Consensus 117 g~~KV~IIDEa~~LT~~A--~NALLKtLEE-PP~~tifIL-aTte~~ 159 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA--FNALLKTLEE-PPKHVIFIL-ATTEVH 159 (725)
T ss_pred CCCEEEEEEChhhCCHHH--HHHHHHHhhc-CCCceEEEE-EcCChh
Confidence 566899999999985433 3444444454 444444443 344443
No 464
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=43.13 E-value=63 Score=26.49 Aligned_cols=56 Identities=7% Similarity=-0.043 Sum_probs=44.7
Q ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 119 AGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
|..-..|...|...|.+..-.-.+--||--+.=+.++..|.+.|+++...+|.-+.
T Consensus 38 ~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~ 93 (406)
T TIGR00936 38 CLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNE 93 (406)
T ss_pred EEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHH
Confidence 43445788999999988855556667787788888999999999999999987543
No 465
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.11 E-value=41 Score=20.29 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=7.7
Q ss_pred hhCCCceEeeec
Q 030396 159 AFDDIRAGVIHS 170 (178)
Q Consensus 159 ~~~g~~~~~lh~ 170 (178)
...|++...+-|
T Consensus 48 ~~~g~~~~iiig 59 (91)
T cd00860 48 QLQKIPYILVVG 59 (91)
T ss_pred HHcCCCEEEEEC
Confidence 456777666665
No 466
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=43.02 E-value=41 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=22.1
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
.++++|++.+.+.|+..+..+...|
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999997765
No 467
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=43.01 E-value=16 Score=26.46 Aligned_cols=51 Identities=16% Similarity=0.060 Sum_probs=33.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+.+++||...-++.. ....+..++..+......++++++.-.+.+..
T Consensus 144 ~~~p~llllDEPt~~LD~~-~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPL-LREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred hcCCCEEEEcCCCccCCHH-HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 4677899999999998887 67777777776322223455555544444433
No 468
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=42.95 E-value=36 Score=26.87 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=12.2
Q ss_pred CeeEEEEeccccccc
Q 030396 39 RVEYLVLDEADKLFE 53 (178)
Q Consensus 39 ~l~~lViDE~d~ll~ 53 (178)
....+||||+|.+..
T Consensus 129 ~~~vlvIDE~d~L~~ 143 (365)
T TIGR02928 129 DSLIIVLDEIDYLVG 143 (365)
T ss_pred CeEEEEECchhhhcc
Confidence 345789999999974
No 469
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.57 E-value=70 Score=23.56 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++... ..+..|||.+...|.-+...|.+.|+
T Consensus 159 ~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~~l~~~g~ 196 (263)
T cd06280 159 AEAALAAWLAAP-ERPEALVASNGLLLLGALRAVRAAGL 196 (263)
T ss_pred HHHHHHHHhcCC-CCCcEEEECCcHHHHHHHHHHHHcCC
Confidence 345666676543 46789999999999999999999886
No 470
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=42.51 E-value=69 Score=20.32 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.0
Q ss_pred eeEEEEeccccccccC
Q 030396 40 VEYLVLDEADKLFEVG 55 (178)
Q Consensus 40 l~~lViDE~d~ll~~~ 55 (178)
...+++||++.+....
T Consensus 79 ~~viiiDei~~~~~~~ 94 (148)
T smart00382 79 PDVLILDEITSLLDAE 94 (148)
T ss_pred CCEEEEECCcccCCHH
Confidence 5899999999997765
No 471
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=42.23 E-value=26 Score=25.21 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=33.2
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
..+.+++++||.-.-++.. ....+..+++. ......+++++..-+..+.
T Consensus 142 ~~~p~llllDEPt~~LD~~-~~~~l~~~l~~-~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYK-NMERVGELIRE-LAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HhCCCEEEEeCCCccCCHH-HHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence 4677899999999988887 67777777777 3323345555555444443
No 472
>PHA00012 I assembly protein
Probab=42.12 E-value=1.6e+02 Score=23.71 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=15.5
Q ss_pred CCCCeeEEEEeccccccccC
Q 030396 36 DLSRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 36 ~~~~l~~lViDE~d~ll~~~ 55 (178)
|-..-..+|+||||..+...
T Consensus 78 dep~gsLlVlDEaq~~fp~R 97 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSR 97 (361)
T ss_pred CCCCCcEEEEECcccccCCC
Confidence 33566799999999998643
No 473
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=41.83 E-value=39 Score=27.44 Aligned_cols=72 Identities=11% Similarity=0.235 Sum_probs=44.4
Q ss_pred cHHHHHHHHcCCCCCCCe----------eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec--C--------
Q 030396 23 PLRLRLAIRRKKIDLSRV----------EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT--L-------- 82 (178)
Q Consensus 23 P~~l~~~l~~~~~~~~~l----------~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT--~-------- 82 (178)
-+.+...+.++.+.+..+ .|+|+|||-.| ...++..|+.+ ..+...+++..-- +
T Consensus 325 ~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL-----TpheikTiltR-~G~GsKIVl~gd~aQiD~~yl~~~ 398 (436)
T COG1875 325 DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL-----TPHELKTILTR-AGEGSKIVLTGDPAQIDTPYLDET 398 (436)
T ss_pred hHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc-----CHHHHHHHHHh-ccCCCEEEEcCCHHHcCCccccCC
Confidence 445556666665543222 57899999988 56779999999 6777776654211 0
Q ss_pred cHHHHHHHHHhccCcEEE
Q 030396 83 PDFVEELARSIMHDAVRV 100 (178)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v 100 (178)
++-+....++|-+.|...
T Consensus 399 snGLtyvverfk~~~l~~ 416 (436)
T COG1875 399 SNGLTYVVEKFKGHPLSA 416 (436)
T ss_pred CccHHHHHHHhcCCCcee
Confidence 122555666666555433
No 474
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=41.68 E-value=51 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
...-+.+|+||+|.|-... .+.+...+..
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a--~naLLK~LEe 145 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA--FNALLKTIEE 145 (563)
T ss_pred cCCCEEEEEEChhhcCHHH--HHHHHHhhcc
Confidence 3566899999999994433 3333344443
No 475
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.67 E-value=14 Score=27.24 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=35.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCC-CceEEEEeecCcHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNP-SIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~-~~q~i~~SAT~~~~~~~~ 89 (178)
..+.+.+++||...=++.. ....+..+++. +.. ...++++++.-...+...
T Consensus 146 ~~~p~llllDEP~~gLD~~-~~~~l~~~l~~-~~~~~~~tiii~sh~~~~~~~~ 197 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLK-LRKDMQLELKR-LQKELGITFVFVTHDQEEALTM 197 (232)
T ss_pred hcCCCEEEEcCCcccCCHH-HHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHh
Confidence 4677999999999988887 77778777776 333 234666656555444443
No 476
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=41.56 E-value=72 Score=28.39 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhh----hCCCceEeeecCCCcccc
Q 030396 127 LALRQSFAESLNPPVLIFVQSKDRAKELYGELA----FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 127 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~----~~g~~~~~lh~~~~~~~R 177 (178)
..+.-++......++.|-++|..-|..-++.+. ..|+++.++.|+++.++|
T Consensus 86 a~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r 140 (745)
T TIGR00963 86 ATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEER 140 (745)
T ss_pred HHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHH
Confidence 333334555556789999999998888887664 468999999999987764
No 477
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=41.24 E-value=34 Score=31.45 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
....++++||.+.-++.. ....+..++.. +....|++++|--
T Consensus 1110 ~~~~~~~lDE~~~~ld~~-~~~~~~~~~~~-~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1110 KPAPFCILDEVDAPLDDA-NVERFANLLKE-FSKNTQFIVITHN 1151 (1179)
T ss_pred CCCCeEEecCccccccHH-HHHHHHHHHHH-hccCCEEEEEEcC
Confidence 456799999999988877 67777777777 4555675554433
No 478
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=41.20 E-value=1.4e+02 Score=21.86 Aligned_cols=91 Identities=21% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCcEE---EEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcC
Q 030396 61 IDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVR---VIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 137 (178)
Q Consensus 61 i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~ 137 (178)
..++++.+.....+++++|+++..-++.+.+.+.-+... ..... +.....+ +-.......|...+.++..+..
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~d-G~ltG~v---~g~~~~~~~K~~~l~~~~~~~g 157 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDD-GKLTGRV---VGPICDGEGKAKALRELAAELG 157 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeC-CEEecee---eeeecCcchHHHHHHHHHHHcC
Confidence 344444422357899999999998888888887665422 22222 2112222 2223355678999999998765
Q ss_pred CC--CEEEEeCCchHHHHHH
Q 030396 138 NP--PVLIFVQSKDRAKELY 155 (178)
Q Consensus 138 ~~--~~lIF~~t~~~~~~l~ 155 (178)
.. .++-|-.+..+.-.+.
T Consensus 158 ~~~~~~~a~gDs~nDlpml~ 177 (212)
T COG0560 158 IPLEETVAYGDSANDLPMLE 177 (212)
T ss_pred CCHHHeEEEcCchhhHHHHH
Confidence 44 5776767666655543
No 479
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=40.99 E-value=62 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.1
Q ss_pred EEEEeCCchHHHHHHHHhhh----C-CCceEeeecCCCccc
Q 030396 141 VLIFVQSKDRAKELYGELAF----D-DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~----~-g~~~~~lh~~~~~~~ 176 (178)
+||.++|++-|..+++.+.. . ++.+..+.||++...
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~ 142 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK 142 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH
Confidence 99999999999999998854 3 577899999987543
No 480
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=40.83 E-value=36 Score=24.39 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=23.8
Q ss_pred eeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 40 VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 40 l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+++|+|||=.+ -.+.+..+++. .. .++||.|...
T Consensus 91 ~DlliVDEAAaI-----p~p~L~~ll~~----~~-~vv~stTi~G 125 (177)
T PF05127_consen 91 ADLLIVDEAAAI-----PLPLLKQLLRR----FP-RVVFSTTIHG 125 (177)
T ss_dssp -SCEEECTGGGS------HHHHHHHHCC----SS-EEEEEEEBSS
T ss_pred CCEEEEechhcC-----CHHHHHHHHhh----CC-EEEEEeeccc
Confidence 479999999887 35667777654 22 4677888764
No 481
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=40.59 E-value=21 Score=25.92 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+.+++++||.-.-++.. ....+..++.. ......++++++.-...+.++
T Consensus 153 ~~~p~llllDEPt~~LD~~-~~~~l~~~l~~-~~~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLE-GITLVNRMISA-HLRGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred hcCCCEEEEeCCcccCCHH-HHHHHHHHHHH-HHhCCCEEEEEecChhhhhhh
Confidence 4677899999998888776 66677777765 222334555554444444443
No 482
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=40.48 E-value=18 Score=28.65 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=40.5
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
..+.+++++||--.=++.. ....+..+++. +...-.++++|.....++..++..
T Consensus 188 ~~~P~lLiLDEPt~gLD~~-~r~~l~~~l~~-l~~~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPH-ARHLIWERLRS-LLARGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred hcCCCEEEEECCCCCCCHH-HHHHHHHHHHH-HHhCCCEEEEECCCHHHHHHhCCE
Confidence 4678999999999988887 77888888877 443445777777777666665554
No 483
>PRK08939 primosomal protein DnaI; Reviewed
Probab=40.46 E-value=43 Score=26.17 Aligned_cols=71 Identities=7% Similarity=0.069 Sum_probs=36.9
Q ss_pred cCCCcEEEeCcHHHHHHHH----cCCC-----CCCCeeEEEEeccccccccCCCh-hhHHHHHhhCCCCCceEEEEeecC
Q 030396 13 KFSCDILISTPLRLRLAIR----RKKI-----DLSRVEYLVLDEADKLFEVGNLL-KHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~----~~~~-----~~~~l~~lViDE~d~ll~~~~~~-~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
+.+..+.+.+...+..-+. .+.. .+.++++|||||+..---..... +.+..|++..+..... .++|.-+
T Consensus 182 ~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl 260 (306)
T PRK08939 182 KKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNF 260 (306)
T ss_pred HcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCC
Confidence 3456665554444443332 2221 17899999999997642222123 3345565542334444 4555666
Q ss_pred cH
Q 030396 83 PD 84 (178)
Q Consensus 83 ~~ 84 (178)
+.
T Consensus 261 ~~ 262 (306)
T PRK08939 261 DF 262 (306)
T ss_pred CH
Confidence 53
No 484
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=40.38 E-value=83 Score=26.30 Aligned_cols=50 Identities=0% Similarity=-0.117 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchH-----------HHHHHHHhhh-CCCceEeeecCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDR-----------AKELYGELAF-DDIRAGVIHSDLSQ 174 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~-----------~~~l~~~L~~-~g~~~~~lh~~~~~ 174 (178)
-.+.+.+++.....++++|+++|..+ |-.+|++|+. .|.++..+--+++.
T Consensus 188 v~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 188 GNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 34445555555557889999988776 6668999998 99999888766653
No 485
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=40.38 E-value=62 Score=28.81 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.0
Q ss_pred EEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccc
Q 030396 19 LISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 19 ii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~ 53 (178)
|=+-||++.+-+++ +.-|. .+.+||+|++..
T Consensus 488 VGAMPGkiIq~LK~v~t~NP----liLiDEvDKlG~ 519 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTENP----LILIDEVDKLGS 519 (906)
T ss_pred eccCChHHHHHHHhhCCCCc----eEEeehhhhhCC
Confidence 34579999999986 44443 789999999974
No 486
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=40.37 E-value=87 Score=28.20 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec
Q 030396 121 SEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
....|+..+++-++. ...+|+||-+.+.+.++.++..|.+.|++-..+..
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 445677777666653 34789999999999999999999999987655543
No 487
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.36 E-value=64 Score=24.17 Aligned_cols=37 Identities=14% Similarity=-0.136 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
...+.++++.. ..+..|||.+..-|.-+...|.+.|+
T Consensus 166 ~~~~~~~l~~~-~~~~ai~~~~d~~A~gvl~al~~~gl 202 (269)
T cd06287 166 YAACAQLLAQH-PDLDALCVPVDAFAVGAVRAATELGR 202 (269)
T ss_pred HHHHHHHHhCC-CCCCEEEEcCcHHHHHHHHHHHHcCC
Confidence 45556666654 46799999999999999999999987
No 488
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=40.23 E-value=1.4e+02 Score=25.31 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCCEEEEeCCchH-----------HHHHHHHhhhCCCceEeeecCCCc
Q 030396 128 ALRQSFAESLNPPVLIFVQSKDR-----------AKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 128 ~l~~ll~~~~~~~~lIF~~t~~~-----------~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+.++.......+++|+++|..+ |-.+|++|+..|.++..+--+|+.
T Consensus 208 ~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr 265 (502)
T PRK09281 208 VVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSK 265 (502)
T ss_pred HHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchH
Confidence 33334444557789999998887 777999999999999888777664
No 489
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=40.12 E-value=44 Score=19.75 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
..-++|.|.+.+.|+.+.+.|++
T Consensus 47 dDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 47 DDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp SSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh
Confidence 45789999999999999998875
No 490
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=40.02 E-value=22 Score=26.36 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+.+++||...-++.. ....+..+++. +.....+++++..-.+.+..
T Consensus 152 ~~~p~llllDEP~~~LD~~-~~~~l~~~l~~-~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPE-LRHEVLKVMQD-LAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred hcCCCEEEEcCCcccCCHH-HHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHH
Confidence 4677899999999998887 67777777776 33333445554444434333
No 491
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.89 E-value=58 Score=22.86 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=17.1
Q ss_pred CCCEEEEe---CCchHHHHHHHHhhhCCCceEe
Q 030396 138 NPPVLIFV---QSKDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 138 ~~~~lIF~---~t~~~~~~l~~~L~~~g~~~~~ 167 (178)
.++++||| |+=.++-.++.+|.+.|+++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 45566666 3444455566666666666555
No 492
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=39.88 E-value=26 Score=25.68 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=32.9
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
..+.+++++||.-.-++.. ....+..+++. ...+ .+++++..-.+.+..
T Consensus 157 ~~~p~llllDEPt~~LD~~-~~~~l~~~l~~-~~~~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPI-STAKIEELIAE-LKKE-YTIVIVTHNMQQAAR 205 (227)
T ss_pred hcCCCEEEEeCCCccCCHH-HHHHHHHHHHH-HhhC-cEEEEEeccHHHHHH
Confidence 4567899999999988887 67777777777 4444 455554444433333
No 493
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=39.88 E-value=26 Score=25.08 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=31.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
..+.+++++||.-.-++.. ....+.++++. +.....++++++.-+
T Consensus 127 ~~~p~illlDEP~~~LD~~-~~~~l~~~l~~-~~~~~~tiii~sh~~ 171 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSS-SALQVMSLLRR-LADTGRTIICSIHQP 171 (194)
T ss_pred HcCCCEEEEeCCCcCCCHH-HHHHHHHHHHH-HHhCCCEEEEEecCc
Confidence 4677899999999988887 77788887777 333334555544443
No 494
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.82 E-value=2e+02 Score=23.25 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=74.6
Q ss_pred hccCCCcEEEeCcHHHHHHHHc-CCCC--CCCeeEEEEecccccccc---CCChhhHHHHHhhCCCCCceEEEEee----
Q 030396 11 LSKFSCDILISTPLRLRLAIRR-KKID--LSRVEYLVLDEADKLFEV---GNLLKHIDPVVKACSNPSIVRSLFSA---- 80 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~-~~~~--~~~l~~lViDE~d~ll~~---~~~~~~i~~i~~~~~~~~~q~i~~SA---- 80 (178)
-++....++.|++|+-...-.. +... ..+..+-.++|-|...-. ....+.+.++.+. .++ ..+++-+
T Consensus 23 ~I~d~~~lvhGp~gC~~~~~~~~~~~~~~~~~~~~t~l~E~dvv~g~gg~~~L~~aI~ei~~~-~~P--~~I~V~sTCv~ 99 (396)
T cd01979 23 KIEDSFFLVVGTKTCAHFLQNALGVMIFAEPRFAMAELEEGDLSALLNDYAELDRVVTQIKRD-RNP--SVIFLIGSCTT 99 (396)
T ss_pred ccCcceeEeecchhHHHHHHhhhccEeecCCcceeeecCchhhhhccCchHHHHHHHHHHHHh-cCC--CEEEEECCCHH
Confidence 3567889999999997553221 2111 233345699999986532 1366667777776 443 3444444
Q ss_pred -cCcHHHHHHHHHhccC--cEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHh-cCC-CCEEEE-eCCchHHHHH
Q 030396 81 -TLPDFVEELARSIMHD--AVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE-SLN-PPVLIF-VQSKDRAKEL 154 (178)
Q Consensus 81 -T~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~-~~~-~~~lIF-~~t~~~~~~l 154 (178)
++..++...++.+-.. ...+.+...+... -+......-...+.+.+.+ ... .++.+. .-+......+
T Consensus 100 e~IGDDi~~v~~~~~~~~~~pvi~v~t~gf~g-------~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el 172 (396)
T cd01979 100 EVIKMDLEGAAPRLSAEIGVPILVASASGLDY-------TFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQL 172 (396)
T ss_pred HHHhcCHHHHHHHHhhcCCCcEEEeeCCCccc-------cHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHH
Confidence 4455666666665322 2222222111100 0010112222333333321 112 233321 1334567889
Q ss_pred HHHhhhCCCceE
Q 030396 155 YGELAFDDIRAG 166 (178)
Q Consensus 155 ~~~L~~~g~~~~ 166 (178)
...|...|+++.
T Consensus 173 ~~lL~~~Gi~v~ 184 (396)
T cd01979 173 RRELEQLGIPVV 184 (396)
T ss_pred HHHHHHcCCeEE
Confidence 999999999886
No 495
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=39.68 E-value=21 Score=26.20 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=34.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
..+.+++++||.-.-++.. ....+..+++. +.....+++++..-...+..+
T Consensus 149 ~~~p~llllDEPt~~LD~~-~~~~~~~~l~~-~~~~~~tii~~sH~~~~~~~~ 199 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPI-AVQDIQKIIKI-LKDRGIGVLITDHNVRETLSI 199 (232)
T ss_pred hcCCCEEEecCCcccCCHH-HHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHh
Confidence 4677999999999988887 67777777777 333334555555544444443
No 496
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=39.57 E-value=27 Score=27.00 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=39.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
..+.+++++||.-.=++.. ....+..+++. +... .+++++.....++.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~-~~~~l~~~l~~-~~~~-~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPN-QLVEIRNVIKN-IGKD-KTIILSTHIMQEVEAICDR 201 (301)
T ss_pred hcCCCEEEEcCCcccCCHH-HHHHHHHHHHH-hcCC-CEEEEEcCCHHHHHHhCCE
Confidence 5788999999999988877 67778888887 4444 5677766666666776655
No 497
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=39.48 E-value=31 Score=25.43 Aligned_cols=149 Identities=16% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCcEEEe---CcHHHHHHHHcCC-CCCCCeeEEEEeccccccccC---CChhhHHH-HHhhCCC-CCceEEEEeecCc-H
Q 030396 15 SCDILIS---TPLRLRLAIRRKK-IDLSRVEYLVLDEADKLFEVG---NLLKHIDP-VVKACSN-PSIVRSLFSATLP-D 84 (178)
Q Consensus 15 ~~~Iii~---TP~~l~~~l~~~~-~~~~~l~~lViDE~d~ll~~~---~~~~~i~~-i~~~~~~-~~~q~i~~SAT~~-~ 84 (178)
.+.+.++ ||.-+.+.+.+.. ++++++.++-+||=- +..+ +....+++ +++. .+ +..++..+....+ .
T Consensus 24 ~~~l~lsGGstp~~~y~~L~~~~~i~w~~v~~f~~DEr~--Vp~~~~~Sn~~~~~~~ll~~-~~~~~~~v~~~~~~~~~~ 100 (219)
T cd01400 24 RFSLALSGGSTPKPLYELLAAAPALDWSKVHVFLGDERC--VPPDDPDSNYRLAREALLSH-VAIPAANIHPIPTELGPE 100 (219)
T ss_pred eEEEEECCCccHHHHHHHhccccCCCCceEEEEEeeccc--cCCCCcccHHHHHHHHhhcc-CCCCHhhEEeCCCCCCHH
Confidence 3445553 7777888877664 899999999999954 3332 23333332 3343 22 2234444433222 1
Q ss_pred H----HHHHHHHhc---c--CcEEEEEcCCcccc-------C---CceEEEEEcCC----hhhHHHHHHHHHHhcCCCCE
Q 030396 85 F----VEELARSIM---H--DAVRVIVGRKNTAS-------E---SIKQKLVFAGS----EEGKLLALRQSFAESLNPPV 141 (178)
Q Consensus 85 ~----~~~~~~~~~---~--~~~~v~~~~~~~~~-------~---~i~~~~~~~~~----~~~k~~~l~~ll~~~~~~~~ 141 (178)
. ..+.+...+ . |-...-++.++.+. . .-.+.++.... ...++..-...+.. .+++
T Consensus 101 ~~a~~y~~~i~~~~~~~~~~Dl~lLGmG~DGH~ASlfP~~~~~~~~~~~~v~~~~~~~~~p~~RiTlt~~~i~~--a~~i 178 (219)
T cd01400 101 DAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTASLFPGHPALLEETDRLVVAVTDSPKPPPERITLTLPVLNN--ARRV 178 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECCcCCCceeecCCCCcccccccCceEEEEeCCCCCCCccEEecHHHHhc--CCeE
Confidence 1 222333321 1 22333333332111 0 11112323321 12344444555544 3677
Q ss_pred EEEeCCchHHHHHHHHhhhC---CCceEee
Q 030396 142 LIFVQSKDRAKELYGELAFD---DIRAGVI 168 (178)
Q Consensus 142 lIF~~t~~~~~~l~~~L~~~---g~~~~~l 168 (178)
++.+.....++.+...|... .+++..+
T Consensus 179 ~ll~~G~~K~~~l~~~l~~~~~~~~Pas~l 208 (219)
T cd01400 179 VFLVTGAEKAEALKRALAGPDPEELPAARV 208 (219)
T ss_pred EEEEeChhHHHHHHHHHcCCCCCCCChhhh
Confidence 77778888888888888542 3455444
No 498
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=39.43 E-value=84 Score=29.03 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 36 DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 36 ~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
.+...++||+||+-.+-. .++..+++.......+++++.=
T Consensus 430 ~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~~garvVLVGD 469 (988)
T PRK13889 430 LLTSRDVLVIDEAGMVGT-----RQLERVLSHAADAGAKVVLVGD 469 (988)
T ss_pred ccccCcEEEEECcccCCH-----HHHHHHHHhhhhCCCEEEEECC
Confidence 356778999999997733 3455666653345677776643
No 499
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=39.42 E-value=50 Score=28.66 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=28.1
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
....+++|+||+..+ -.+.+..+++. ++...++|++.
T Consensus 263 ~l~~dvlIvDEaSMv-----d~~lm~~ll~a-l~~~~rlIlvG 299 (615)
T PRK10875 263 PLHLDVLVVDEASMV-----DLPMMARLIDA-LPPHARVIFLG 299 (615)
T ss_pred CCCCCeEEEChHhcc-----cHHHHHHHHHh-cccCCEEEEec
Confidence 345689999999888 25667778888 77788888774
No 500
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=39.42 E-value=1.1e+02 Score=25.17 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHHhcCCCCEEEE----eCCch-HHHHHHHHhhhCCCceEeeecCCCc
Q 030396 121 SEEGKLLALRQSFAESLNPPVLIF----VQSKD-RAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~~~~~~~lIF----~~t~~-~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
+...+.+.+.+++++..-.=+|.| |.+-. ....+.+.+.+.|+|...+.|++..
T Consensus 345 ~~~~R~~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 345 DPRIKSEMMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 435689999999998855555553 44443 5556778888899999999999876
Done!