Query 030396
Match_columns 178
No_of_seqs 106 out of 1168
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.6E-30 2.2E-34 205.0 20.4 169 6-177 170-339 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.4E-28 4.8E-33 195.2 15.2 170 6-177 146-315 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 3.3E-27 1.1E-31 187.5 19.2 170 6-177 142-315 (417)
4 3eiq_A Eukaryotic initiation f 100.0 2.3E-27 8E-32 188.1 15.5 162 14-177 158-319 (414)
5 3fht_A ATP-dependent RNA helic 99.9 2.8E-26 9.6E-31 181.6 16.8 163 14-177 142-305 (412)
6 3pey_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 177.1 16.7 163 14-177 120-282 (395)
7 1xti_A Probable ATP-dependent 99.9 2E-25 6.7E-30 175.8 16.4 162 14-177 127-289 (391)
8 3fmp_B ATP-dependent RNA helic 99.9 1.3E-26 4.5E-31 187.7 9.5 163 14-177 209-372 (479)
9 1s2m_A Putative ATP-dependent 99.9 2.7E-25 9.2E-30 175.7 16.7 167 7-177 131-297 (400)
10 1fuu_A Yeast initiation factor 99.9 3.2E-26 1.1E-30 180.4 10.4 161 15-177 138-298 (394)
11 1hv8_A Putative ATP-dependent 99.9 1.1E-23 3.9E-28 164.1 18.7 155 15-177 123-277 (367)
12 3fho_A ATP-dependent RNA helic 99.9 1.8E-24 6.1E-29 176.6 14.7 163 14-177 234-396 (508)
13 3sqw_A ATP-dependent RNA helic 99.9 9.1E-25 3.1E-29 180.8 12.1 170 7-177 141-330 (579)
14 3i5x_A ATP-dependent RNA helic 99.9 1.9E-24 6.5E-29 178.1 12.3 164 13-177 199-381 (563)
15 2z0m_A 337AA long hypothetical 99.9 9.2E-22 3.1E-26 151.7 16.0 151 15-177 105-255 (337)
16 2v1x_A ATP-dependent DNA helic 99.9 7.4E-22 2.5E-26 163.5 15.3 163 13-177 134-306 (591)
17 3l9o_A ATP-dependent RNA helic 99.9 1.7E-21 5.8E-26 170.7 13.4 161 13-177 264-519 (1108)
18 1oyw_A RECQ helicase, ATP-depe 99.9 5.8E-21 2E-25 156.3 14.4 157 13-177 113-275 (523)
19 2xgj_A ATP-dependent RNA helic 99.8 1.3E-19 4.6E-24 157.5 18.5 160 14-177 167-421 (1010)
20 3oiy_A Reverse gyrase helicase 99.8 3.1E-21 1.1E-25 153.4 7.2 153 6-171 107-286 (414)
21 3fe2_A Probable ATP-dependent 99.8 3.2E-20 1.1E-24 137.9 10.5 98 6-105 143-240 (242)
22 4a4z_A Antiviral helicase SKI2 99.8 3.3E-19 1.1E-23 155.0 17.0 160 14-177 122-414 (997)
23 1wrb_A DJVLGB; RNA helicase, D 99.8 8.9E-20 3E-24 136.2 11.0 109 6-115 141-252 (253)
24 4ddu_A Reverse gyrase; topoiso 99.8 1.9E-20 6.3E-25 164.1 8.4 153 6-171 164-343 (1104)
25 3iuy_A Probable ATP-dependent 99.8 2.1E-19 7.3E-24 132.1 9.9 93 7-101 135-227 (228)
26 1tf5_A Preprotein translocase 99.8 1.2E-20 4.2E-25 158.9 3.3 164 12-177 169-471 (844)
27 2fsf_A Preprotein translocase 99.8 7.7E-20 2.6E-24 153.9 6.9 166 10-177 158-480 (853)
28 1gku_B Reverse gyrase, TOP-RG; 99.8 1.9E-20 6.4E-25 163.8 3.0 152 8-174 149-310 (1054)
29 2zj8_A DNA helicase, putative 99.8 3.3E-19 1.1E-23 150.9 9.3 154 14-177 113-309 (720)
30 1q0u_A Bstdead; DEAD protein, 99.8 5E-19 1.7E-23 129.4 9.0 96 7-104 118-213 (219)
31 2p6r_A Afuhel308 helicase; pro 99.8 4.8E-19 1.6E-23 149.5 10.0 155 14-177 113-311 (702)
32 3fmo_B ATP-dependent RNA helic 99.8 5.2E-19 1.8E-23 135.4 9.3 90 13-104 208-299 (300)
33 3bor_A Human initiation factor 99.8 9.2E-19 3.2E-23 129.6 9.7 94 8-103 141-235 (237)
34 2va8_A SSO2462, SKI2-type heli 99.8 3.2E-18 1.1E-22 144.7 13.8 152 15-177 121-327 (715)
35 1vec_A ATP-dependent RNA helic 99.8 2.8E-18 9.6E-23 124.1 11.6 93 6-100 113-205 (206)
36 3ber_A Probable ATP-dependent 99.8 2.8E-18 9.7E-23 128.0 10.8 95 7-103 153-248 (249)
37 2gxq_A Heat resistant RNA depe 99.8 2.3E-18 8E-23 124.5 10.1 95 7-103 112-206 (207)
38 1wp9_A ATP-dependent RNA helic 99.8 1.4E-17 4.8E-22 133.4 14.9 78 14-93 100-180 (494)
39 3o8b_A HCV NS3 protease/helica 99.8 2.1E-18 7.3E-23 143.5 9.9 140 12-177 294-435 (666)
40 1nkt_A Preprotein translocase 99.8 1.7E-19 5.7E-24 152.4 2.7 164 12-177 197-499 (922)
41 3dkp_A Probable ATP-dependent 99.7 5.6E-18 1.9E-22 125.8 10.0 94 12-105 146-243 (245)
42 1qde_A EIF4A, translation init 99.7 6.2E-18 2.1E-22 123.8 9.9 90 15-106 131-220 (224)
43 2oxc_A Probable ATP-dependent 99.7 4.9E-18 1.7E-22 125.1 9.1 88 14-102 141-228 (230)
44 4a2p_A RIG-I, retinoic acid in 99.7 2.1E-17 7.1E-22 135.3 13.5 74 9-83 99-177 (556)
45 2ykg_A Probable ATP-dependent 99.7 1.5E-18 5.2E-23 146.0 6.4 74 10-83 106-184 (696)
46 3ly5_A ATP-dependent RNA helic 99.7 7.2E-18 2.5E-22 126.7 9.4 89 7-97 168-257 (262)
47 3tbk_A RIG-I helicase domain; 99.7 6.1E-17 2.1E-21 132.3 13.9 75 10-84 97-176 (555)
48 2pl3_A Probable ATP-dependent 99.7 2.7E-17 9.2E-22 121.5 10.3 88 14-103 145-233 (236)
49 4a2q_A RIG-I, retinoic acid in 99.7 7.9E-17 2.7E-21 137.7 11.9 75 9-83 340-418 (797)
50 2xau_A PRE-mRNA-splicing facto 99.7 1.2E-16 4.1E-21 135.9 12.2 155 14-177 184-353 (773)
51 1t6n_A Probable ATP-dependent 99.7 5.7E-17 2E-21 118.4 8.1 86 14-101 133-219 (220)
52 4a2w_A RIG-I, retinoic acid in 99.7 2.7E-16 9.2E-21 136.4 11.5 74 10-83 341-418 (936)
53 2eyq_A TRCF, transcription-rep 99.7 6.7E-16 2.3E-20 136.1 13.4 153 8-177 698-853 (1151)
54 4f92_B U5 small nuclear ribonu 99.7 1E-15 3.5E-20 138.8 14.1 161 14-177 1019-1228(1724)
55 4gl2_A Interferon-induced heli 99.6 8.1E-17 2.8E-21 135.6 5.4 74 11-84 102-193 (699)
56 4f92_B U5 small nuclear ribonu 99.6 7.8E-16 2.7E-20 139.6 11.7 160 14-177 180-393 (1724)
57 2jlq_A Serine protease subunit 99.6 1.5E-15 5.3E-20 122.2 6.6 138 15-174 87-224 (451)
58 1gm5_A RECG; helicase, replica 99.5 1.5E-14 5.2E-19 122.9 9.6 152 8-177 463-628 (780)
59 2oca_A DAR protein, ATP-depend 99.5 1.7E-15 5.9E-20 123.3 3.5 155 13-177 202-386 (510)
60 1yks_A Genome polyprotein [con 99.5 2.9E-16 9.9E-21 126.0 -2.7 132 19-171 71-210 (440)
61 3h1t_A Type I site-specific re 99.5 1.1E-14 3.9E-19 120.6 6.4 159 12-174 271-483 (590)
62 2whx_A Serine protease/ntpase/ 99.5 7.1E-15 2.4E-19 122.3 3.5 132 18-171 257-388 (618)
63 2d7d_A Uvrabc system protein B 99.5 1.2E-13 4E-18 115.9 9.3 141 21-177 320-484 (661)
64 2v6i_A RNA helicase; membrane, 99.5 1.5E-13 5.1E-18 110.0 9.0 135 16-172 71-205 (431)
65 2fwr_A DNA repair protein RAD2 99.4 4.1E-14 1.4E-18 114.2 3.7 149 14-177 170-383 (472)
66 3llm_A ATP-dependent RNA helic 99.4 1.2E-13 4.2E-18 101.9 5.7 76 14-97 154-231 (235)
67 1c4o_A DNA nucleotide excision 99.4 4.5E-13 1.6E-17 112.4 9.2 141 21-177 314-478 (664)
68 3rc3_A ATP-dependent RNA helic 99.4 7.4E-14 2.5E-18 117.0 4.3 146 14-177 211-359 (677)
69 2wv9_A Flavivirin protease NS2 99.4 1.4E-14 4.8E-19 121.5 -0.5 131 20-171 305-443 (673)
70 2z83_A Helicase/nucleoside tri 99.3 6.9E-13 2.4E-17 106.9 5.7 129 16-171 90-223 (459)
71 2p6n_A ATP-dependent RNA helic 99.3 4.4E-12 1.5E-16 90.9 7.2 85 91-177 9-93 (191)
72 1z63_A Helicase of the SNF2/RA 99.3 2.3E-11 7.9E-16 98.7 11.9 54 124-177 325-381 (500)
73 3dmq_A RNA polymerase-associat 99.3 5E-12 1.7E-16 110.1 6.8 56 122-177 487-543 (968)
74 2rb4_A ATP-dependent RNA helic 99.3 1.6E-11 5.4E-16 86.6 7.7 71 107-177 3-73 (175)
75 2hjv_A ATP-dependent RNA helic 99.2 5.4E-11 1.8E-15 82.9 8.1 71 106-177 4-74 (163)
76 1t5i_A C_terminal domain of A 99.2 7.1E-11 2.4E-15 83.1 8.1 68 109-177 3-70 (172)
77 1fuk_A Eukaryotic initiation f 99.2 7.1E-11 2.4E-15 82.4 7.9 68 110-177 2-69 (165)
78 2jgn_A DBX, DDX3, ATP-dependen 99.1 2.2E-10 7.5E-15 81.5 8.9 72 105-177 13-85 (185)
79 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 3.8E-10 1.3E-14 98.5 10.0 65 14-84 374-440 (1038)
80 3b6e_A Interferon-induced heli 99.0 1.1E-10 3.8E-15 84.2 4.1 67 14-81 131-216 (216)
81 2yjt_D ATP-dependent RNA helic 98.5 9.8E-11 3.4E-15 82.1 0.0 68 110-177 2-69 (170)
82 3mwy_W Chromo domain-containin 98.9 1.6E-08 5.4E-13 86.6 13.3 54 124-177 556-611 (800)
83 1z3i_X Similar to RAD54-like; 98.9 3.5E-08 1.2E-12 82.6 14.7 54 124-177 399-455 (644)
84 3i32_A Heat resistant RNA depe 98.9 4.5E-09 1.6E-13 80.2 7.5 66 111-177 2-67 (300)
85 3eaq_A Heat resistant RNA depe 98.8 5.4E-09 1.9E-13 75.8 6.3 65 112-177 6-70 (212)
86 1rif_A DAR protein, DNA helica 98.7 5.2E-09 1.8E-13 78.9 3.7 63 14-85 203-265 (282)
87 2ipc_A Preprotein translocase 98.6 2.1E-06 7.1E-11 73.5 16.5 44 10-53 163-216 (997)
88 3jux_A Protein translocase sub 98.5 2.8E-07 9.7E-12 77.4 9.0 100 74-177 411-513 (822)
89 2fz4_A DNA repair protein RAD2 98.3 9.5E-07 3.2E-11 65.0 6.5 60 15-84 171-230 (237)
90 1z5z_A Helicase of the SNF2/RA 98.0 7.7E-06 2.6E-10 61.4 5.1 57 121-177 93-152 (271)
91 3crv_A XPD/RAD3 related DNA he 97.2 0.00026 8.9E-09 58.2 4.3 43 11-53 144-187 (551)
92 2vl7_A XPD; helicase, unknown 96.1 0.0013 4.4E-08 53.9 1.0 40 13-52 142-188 (540)
93 3gk5_A Uncharacterized rhodane 95.0 0.021 7.3E-07 36.2 3.5 44 130-173 46-90 (108)
94 1wv9_A Rhodanese homolog TT165 94.9 0.023 7.8E-07 35.0 3.2 36 139-174 54-89 (94)
95 3foj_A Uncharacterized protein 94.7 0.023 7.7E-07 35.4 2.9 36 138-173 56-91 (100)
96 3eme_A Rhodanese-like domain p 94.6 0.023 7.7E-07 35.6 2.7 36 138-173 56-91 (103)
97 3iwh_A Rhodanese-like domain p 94.5 0.023 8E-07 35.8 2.7 36 138-173 56-91 (103)
98 2k0z_A Uncharacterized protein 93.9 0.09 3.1E-06 33.3 4.5 39 136-174 54-92 (110)
99 3hix_A ALR3790 protein; rhodan 93.7 0.052 1.8E-06 34.2 3.1 37 137-173 51-88 (106)
100 2fsx_A RV0390, COG0607: rhodan 93.3 0.1 3.4E-06 34.9 4.2 37 137-173 79-116 (148)
101 1tq1_A AT5G66040, senescence-a 93.1 0.07 2.4E-06 34.9 3.0 37 137-173 81-118 (129)
102 3g5j_A Putative ATP/GTP bindin 93.0 0.11 3.7E-06 33.8 3.9 35 139-173 90-125 (134)
103 1gmx_A GLPE protein; transfera 92.9 0.062 2.1E-06 33.9 2.5 37 137-173 57-94 (108)
104 1qxn_A SUD, sulfide dehydrogen 92.8 0.076 2.6E-06 35.1 2.9 37 137-173 81-118 (137)
105 3nhv_A BH2092 protein; alpha-b 92.8 0.072 2.5E-06 35.6 2.8 36 138-173 72-109 (144)
106 3flh_A Uncharacterized protein 92.7 0.043 1.5E-06 35.6 1.5 45 129-173 61-108 (124)
107 2jtq_A Phage shock protein E; 92.6 0.32 1.1E-05 28.9 5.4 37 137-174 40-77 (85)
108 3d1p_A Putative thiosulfate su 91.9 0.1 3.6E-06 34.4 2.7 37 137-173 90-127 (139)
109 2hhg_A Hypothetical protein RP 91.7 0.086 3E-06 34.7 2.2 37 137-173 85-122 (139)
110 3ilm_A ALR3790 protein; rhodan 91.3 0.12 4.2E-06 34.3 2.6 36 138-173 56-92 (141)
111 1vee_A Proline-rich protein fa 90.3 0.19 6.5E-06 33.0 2.7 37 137-173 73-110 (134)
112 4f67_A UPF0176 protein LPG2838 90.1 0.29 9.9E-06 36.3 3.9 47 127-173 170-217 (265)
113 3tg1_B Dual specificity protei 89.9 0.24 8.2E-06 33.4 3.1 36 138-173 93-137 (158)
114 1urh_A 3-mercaptopyruvate sulf 88.8 0.66 2.3E-05 34.2 5.1 38 137-174 229-267 (280)
115 4a15_A XPD helicase, ATP-depen 87.4 2 6.9E-05 35.7 7.6 84 71-159 374-469 (620)
116 2ouc_A Dual specificity protei 86.5 0.38 1.3E-05 31.3 2.3 36 138-173 83-127 (142)
117 1w36_D RECD, exodeoxyribonucle 85.8 1.3 4.5E-05 36.7 5.6 36 39-80 262-297 (608)
118 1uar_A Rhodanese; sulfurtransf 85.7 0.99 3.4E-05 33.3 4.5 47 127-173 219-270 (285)
119 3hgt_A HDA1 complex subunit 3; 85.3 1.8 6.3E-05 33.0 5.7 53 122-174 107-161 (328)
120 1urh_A 3-mercaptopyruvate sulf 84.6 0.87 3E-05 33.6 3.7 37 137-173 85-123 (280)
121 1e0c_A Rhodanese, sulfurtransf 84.1 0.77 2.6E-05 33.7 3.2 37 137-173 222-259 (271)
122 1rhs_A Sulfur-substituted rhod 83.9 1.3 4.3E-05 33.1 4.3 37 137-173 239-276 (296)
123 2eg4_A Probable thiosulfate su 83.5 0.72 2.5E-05 33.0 2.7 37 137-173 183-219 (230)
124 1e0c_A Rhodanese, sulfurtransf 82.9 1.6 5.4E-05 31.9 4.5 37 137-173 80-118 (271)
125 3aay_A Putative thiosulfate su 82.7 2.2 7.6E-05 31.2 5.2 37 137-173 225-263 (277)
126 3crv_A XPD/RAD3 related DNA he 82.3 6 0.0002 32.2 8.1 20 137-156 392-411 (551)
127 3aay_A Putative thiosulfate su 81.5 1.9 6.6E-05 31.6 4.5 37 137-173 76-114 (277)
128 2chg_A Replication factor C sm 81.4 3.9 0.00013 28.0 6.0 39 38-79 101-139 (226)
129 2j6p_A SB(V)-AS(V) reductase; 80.8 1.8 6E-05 28.9 3.8 47 126-173 56-111 (152)
130 3hzu_A Thiosulfate sulfurtrans 80.6 2 6.8E-05 32.5 4.4 46 128-173 98-148 (318)
131 3i2v_A Adenylyltransferase and 80.3 0.89 3.1E-05 29.0 2.1 34 140-173 74-114 (127)
132 1uar_A Rhodanese; sulfurtransf 78.9 1.6 5.5E-05 32.2 3.3 37 137-173 78-116 (285)
133 4a15_A XPD helicase, ATP-depen 78.7 0.68 2.3E-05 38.5 1.3 40 13-53 173-218 (620)
134 3tbk_A RIG-I helicase domain; 78.5 4.5 0.00015 32.3 6.1 39 138-176 52-94 (555)
135 3olh_A MST, 3-mercaptopyruvate 78.0 1.9 6.4E-05 32.3 3.5 46 128-173 241-290 (302)
136 3ntd_A FAD-dependent pyridine 78.0 1.4 4.7E-05 35.9 2.9 36 138-173 524-559 (565)
137 2wlr_A Putative thiosulfate su 77.7 2.5 8.6E-05 33.2 4.3 47 127-173 189-239 (423)
138 3ics_A Coenzyme A-disulfide re 77.5 1.7 5.9E-05 35.6 3.4 37 137-173 540-576 (588)
139 3kta_B Chromosome segregation 77.0 1.6 5.3E-05 30.0 2.6 39 39-79 86-124 (173)
140 1sxj_E Activator 1 40 kDa subu 76.5 2.4 8.1E-05 32.1 3.7 41 38-81 133-173 (354)
141 3dmn_A Putative DNA helicase; 76.3 15 0.00052 24.8 9.4 56 116-171 37-94 (174)
142 3oiy_A Reverse gyrase helicase 76.2 5.4 0.00019 30.8 5.8 40 136-175 62-104 (414)
143 1yt8_A Thiosulfate sulfurtrans 76.2 2.3 7.9E-05 34.6 3.8 37 137-173 321-358 (539)
144 2oxc_A Probable ATP-dependent 75.2 2.8 9.6E-05 29.6 3.7 60 116-175 65-134 (230)
145 2eg4_A Probable thiosulfate su 75.0 4.9 0.00017 28.5 4.9 33 138-171 61-95 (230)
146 1iqp_A RFCS; clamp loader, ext 75.0 6.2 0.00021 29.1 5.7 42 38-83 109-150 (327)
147 3hzu_A Thiosulfate sulfurtrans 74.9 1.8 6E-05 32.8 2.6 37 137-173 258-296 (318)
148 1t3k_A Arath CDC25, dual-speci 74.6 2.1 7.1E-05 28.6 2.6 37 137-173 84-130 (152)
149 2kjq_A DNAA-related protein; s 74.6 1.2 4.2E-05 29.6 1.5 45 38-84 82-126 (149)
150 1rhs_A Sulfur-substituted rhod 74.5 2.9 0.0001 31.0 3.7 37 137-173 91-131 (296)
151 1d2n_A N-ethylmaleimide-sensit 73.7 3 0.0001 30.3 3.6 47 38-85 123-178 (272)
152 1okg_A Possible 3-mercaptopyru 73.5 2.7 9.1E-05 32.6 3.4 36 138-173 246-282 (373)
153 1okg_A Possible 3-mercaptopyru 73.0 4.3 0.00015 31.5 4.4 38 136-173 93-132 (373)
154 3te6_A Regulatory protein SIR3 72.7 6.5 0.00022 29.8 5.2 42 38-83 131-174 (318)
155 2gno_A DNA polymerase III, gam 72.4 3.1 0.00011 31.2 3.4 43 37-83 80-122 (305)
156 2fz4_A DNA repair protein RAD2 72.3 17 0.00058 25.9 7.3 56 117-173 113-169 (237)
157 4a2p_A RIG-I, retinoic acid in 71.8 6.9 0.00023 31.3 5.6 39 138-176 55-97 (556)
158 3ber_A Probable ATP-dependent 71.0 7.2 0.00025 28.0 5.0 38 137-174 110-151 (249)
159 1a5t_A Delta prime, HOLB; zinc 70.7 4.1 0.00014 30.8 3.8 38 38-78 107-144 (334)
160 2wlr_A Putative thiosulfate su 70.3 3 0.0001 32.8 3.0 46 128-173 345-394 (423)
161 1t6n_A Probable ATP-dependent 69.6 12 0.00041 25.9 5.9 37 138-174 82-123 (220)
162 3euj_A Chromosome partition pr 69.5 4 0.00014 32.9 3.6 37 38-79 413-449 (483)
163 2r2a_A Uncharacterized protein 69.4 5.1 0.00018 28.1 3.8 41 40-81 88-132 (199)
164 4a2q_A RIG-I, retinoic acid in 69.2 8.7 0.0003 32.8 5.8 39 138-176 296-338 (797)
165 1sxj_C Activator 1 40 kDa subu 69.1 10 0.00034 28.6 5.7 37 39-78 110-146 (340)
166 1njg_A DNA polymerase III subu 69.0 5.6 0.00019 27.5 4.0 37 39-78 126-162 (250)
167 4as2_A Phosphorylcholine phosp 68.6 5.8 0.0002 30.1 4.2 111 57-168 144-285 (327)
168 3tp9_A Beta-lactamase and rhod 68.3 3 0.0001 33.2 2.7 36 138-173 427-463 (474)
169 1yt8_A Thiosulfate sulfurtrans 68.3 3.7 0.00013 33.4 3.2 37 137-173 62-99 (539)
170 3jux_A Protein translocase sub 67.8 3.9 0.00013 35.0 3.3 38 15-52 214-258 (822)
171 2p65_A Hypothetical protein PF 67.1 3 0.0001 27.9 2.2 13 40-52 116-128 (187)
172 2fwr_A DNA repair protein RAD2 66.9 17 0.00057 28.6 6.8 58 116-174 112-170 (472)
173 1c25_A CDC25A; hydrolase, cell 66.6 2.8 9.7E-05 28.0 1.9 32 142-173 93-136 (161)
174 1sxj_B Activator 1 37 kDa subu 66.5 4.7 0.00016 29.8 3.3 38 39-79 107-144 (323)
175 2i3b_A HCR-ntpase, human cance 66.2 4 0.00014 28.3 2.7 42 37-83 103-146 (189)
176 1jbk_A CLPB protein; beta barr 66.2 10 0.00034 25.1 4.8 13 40-52 116-128 (195)
177 1qde_A EIF4A, translation init 65.5 7.4 0.00025 27.1 4.0 60 116-175 55-123 (224)
178 3u61_B DNA polymerase accessor 65.2 4.5 0.00016 30.1 3.0 38 38-78 104-142 (324)
179 3olh_A MST, 3-mercaptopyruvate 63.9 6.6 0.00023 29.3 3.7 38 136-173 105-146 (302)
180 1hzm_A Dual specificity protei 63.2 6.7 0.00023 25.7 3.3 37 137-173 91-137 (154)
181 1jr3_A DNA polymerase III subu 63.1 7.2 0.00025 29.4 3.9 37 39-78 119-155 (373)
182 1sxj_D Activator 1 41 kDa subu 62.9 6.3 0.00022 29.5 3.5 42 39-84 133-174 (353)
183 3ec2_A DNA replication protein 62.5 2.6 8.9E-05 28.5 1.1 46 37-84 98-144 (180)
184 2chq_A Replication factor C sm 62.4 7.4 0.00025 28.6 3.7 16 38-53 101-116 (319)
185 2v1u_A Cell division control p 62.2 7.2 0.00025 29.5 3.7 30 38-67 129-158 (387)
186 1l8q_A Chromosomal replication 61.9 3.2 0.00011 31.0 1.6 44 39-83 98-141 (324)
187 1q0u_A Bstdead; DEAD protein, 61.8 7.8 0.00027 27.0 3.6 59 116-174 45-116 (219)
188 1wp9_A ATP-dependent RNA helic 60.9 18 0.00061 27.9 5.9 59 118-176 29-94 (494)
189 3bos_A Putative DNA replicatio 60.8 1.3 4.4E-05 31.2 -0.7 30 38-67 103-132 (242)
190 2lci_A Protein OR36; structura 60.7 26 0.00089 21.4 6.9 54 119-172 32-85 (134)
191 1qb0_A Protein (M-phase induce 60.3 5.9 0.0002 27.9 2.7 36 138-173 109-158 (211)
192 3iuy_A Probable ATP-dependent 60.1 14 0.00047 25.8 4.7 40 137-176 93-135 (228)
193 3syl_A Protein CBBX; photosynt 60.1 7.2 0.00025 28.7 3.3 13 41-53 132-144 (309)
194 4ddu_A Reverse gyrase; topoiso 58.9 22 0.00076 31.7 6.6 41 136-176 119-162 (1104)
195 2v1x_A ATP-dependent DNA helic 58.3 5.5 0.00019 32.9 2.5 39 138-176 84-122 (591)
196 3b6e_A Interferon-induced heli 57.8 15 0.00051 25.1 4.5 61 116-176 52-124 (216)
197 3fe2_A Probable ATP-dependent 57.8 10 0.00035 26.9 3.7 38 138-175 102-143 (242)
198 2z4s_A Chromosomal replication 57.8 7.9 0.00027 30.6 3.3 42 39-80 194-235 (440)
199 1jr3_D DNA polymerase III, del 57.1 14 0.0005 27.7 4.6 43 37-82 74-117 (343)
200 2pl3_A Probable ATP-dependent 57.0 18 0.00062 25.3 4.9 39 137-175 96-138 (236)
201 3r2u_A Metallo-beta-lactamase 56.7 2.3 7.8E-05 34.0 0.0 37 138-174 425-462 (466)
202 3lwd_A 6-phosphogluconolactona 56.1 6.3 0.00022 28.2 2.3 34 16-49 35-71 (226)
203 1xti_A Probable ATP-dependent 55.9 25 0.00085 26.5 5.8 38 138-175 76-118 (391)
204 3lhi_A Putative 6-phosphogluco 55.8 6.4 0.00022 28.3 2.2 36 14-49 34-72 (232)
205 2gxq_A Heat resistant RNA depe 55.6 38 0.0013 22.8 6.3 59 116-174 42-110 (207)
206 2ykg_A Probable ATP-dependent 55.4 26 0.00089 29.0 6.2 37 139-175 62-102 (696)
207 1vec_A ATP-dependent RNA helic 55.3 13 0.00045 25.3 3.8 37 138-174 71-112 (206)
208 3h11_A CAsp8 and FADD-like apo 55.0 3.8 0.00013 30.3 1.0 36 138-174 43-78 (272)
209 1sxj_A Activator 1 95 kDa subu 54.9 8.1 0.00028 31.2 3.0 42 38-82 147-189 (516)
210 4a2w_A RIG-I, retinoic acid in 54.8 13 0.00045 32.4 4.4 39 138-176 296-338 (936)
211 3nwp_A 6-phosphogluconolactona 54.4 6.5 0.00022 28.3 2.1 36 14-49 37-75 (233)
212 4gxt_A A conserved functionall 54.1 22 0.00076 27.6 5.2 100 57-156 222-330 (385)
213 2h54_A Caspase-1; allosteric s 52.7 21 0.00071 24.5 4.4 19 149-167 65-83 (178)
214 4ag6_A VIRB4 ATPase, type IV s 52.6 8.7 0.0003 29.6 2.7 30 38-67 261-292 (392)
215 2dko_A Caspase-3; low barrier 52.1 17 0.00058 24.1 3.7 21 147-167 39-59 (146)
216 3e4c_A Caspase-1; zymogen, inf 52.1 17 0.0006 27.2 4.2 34 140-174 62-106 (302)
217 1oyw_A RECQ helicase, ATP-depe 52.1 39 0.0013 27.2 6.6 59 116-176 44-103 (523)
218 1g5t_A COB(I)alamin adenosyltr 51.9 22 0.00076 24.8 4.5 51 38-89 119-170 (196)
219 3n70_A Transport activator; si 50.7 14 0.00048 23.9 3.2 39 41-83 78-116 (145)
220 3auy_A DNA double-strand break 50.6 14 0.00049 28.2 3.7 40 38-79 303-343 (371)
221 3h4m_A Proteasome-activating n 50.6 9 0.00031 27.8 2.4 13 41-53 112-124 (285)
222 3e1s_A Exodeoxyribonuclease V, 50.5 25 0.00087 28.8 5.3 37 37-79 277-313 (574)
223 2a2k_A M-phase inducer phospha 50.5 7.3 0.00025 26.3 1.8 36 138-173 89-138 (175)
224 2qby_A CDC6 homolog 1, cell di 50.2 13 0.00045 27.9 3.4 15 40-54 129-143 (386)
225 3s99_A Basic membrane lipoprot 50.1 82 0.0028 24.0 10.2 149 11-173 82-240 (356)
226 1tf5_A Preprotein translocase 49.7 32 0.0011 29.8 5.8 45 133-177 119-167 (844)
227 2qgz_A Helicase loader, putati 49.3 32 0.0011 25.6 5.3 46 38-84 213-259 (308)
228 3op3_A M-phase inducer phospha 49.3 6.5 0.00022 28.0 1.4 33 141-173 127-171 (216)
229 2eyq_A TRCF, transcription-rep 48.4 18 0.00063 32.4 4.4 43 126-169 374-416 (1151)
230 3bor_A Human initiation factor 47.9 21 0.00073 25.1 4.0 59 116-174 71-138 (237)
231 2z0m_A 337AA long hypothetical 47.6 58 0.002 23.7 6.6 59 116-175 35-97 (337)
232 4aby_A DNA repair protein RECN 47.5 9.3 0.00032 29.5 2.2 39 41-81 317-355 (415)
233 2b8t_A Thymidine kinase; deoxy 46.7 59 0.002 23.0 6.2 34 17-51 68-101 (223)
234 1fuu_A Yeast initiation factor 45.3 26 0.00087 26.4 4.3 59 116-174 62-129 (394)
235 2qby_B CDC6 homolog 3, cell di 45.2 17 0.0006 27.4 3.4 36 42-80 136-172 (384)
236 1f2t_B RAD50 ABC-ATPase; DNA d 44.8 18 0.00061 23.9 3.0 42 38-80 80-121 (148)
237 3p45_A Caspase-6; protease, hu 44.5 32 0.0011 23.7 4.3 34 139-173 45-92 (179)
238 2orw_A Thymidine kinase; TMTK, 44.4 46 0.0016 22.5 5.2 36 39-80 76-111 (184)
239 4gl2_A Interferon-induced heli 44.3 9.3 0.00032 31.7 1.8 39 139-177 57-99 (699)
240 3sxu_A DNA polymerase III subu 44.2 60 0.0021 21.5 5.5 35 124-158 23-59 (150)
241 1fnn_A CDC6P, cell division co 44.2 5.9 0.0002 30.1 0.5 13 39-51 125-137 (389)
242 3eie_A Vacuolar protein sortin 43.1 39 0.0013 25.1 5.0 14 40-53 111-124 (322)
243 1e69_A Chromosome segregation 43.1 16 0.00053 27.4 2.7 42 38-81 240-281 (322)
244 2l8b_A Protein TRAI, DNA helic 42.9 9.9 0.00034 26.5 1.4 63 14-81 79-158 (189)
245 3s5u_A Putative uncharacterize 42.8 88 0.003 22.2 6.6 48 124-171 147-199 (220)
246 1gm5_A RECG; helicase, replica 42.4 17 0.00057 31.2 3.1 40 138-177 417-460 (780)
247 2fsf_A Preprotein translocase 42.2 41 0.0014 29.2 5.4 60 118-177 93-158 (853)
248 1hv8_A Putative ATP-dependent 41.8 53 0.0018 24.2 5.6 39 136-174 72-114 (367)
249 3co5_A Putative two-component 41.7 22 0.00076 22.9 3.0 39 41-81 77-115 (143)
250 3qk7_A Transcriptional regulat 41.6 38 0.0013 24.4 4.7 41 123-164 172-212 (294)
251 2fna_A Conserved hypothetical 41.6 47 0.0016 24.4 5.3 37 40-78 138-176 (357)
252 1nkt_A Preprotein translocase 41.6 42 0.0014 29.4 5.3 45 133-177 147-195 (922)
253 1vl1_A 6PGL, 6-phosphogluconol 41.5 11 0.00039 27.0 1.7 35 15-49 46-83 (232)
254 3sir_A Caspase; hydrolase; 2.6 41.5 26 0.00088 25.6 3.6 17 149-165 44-60 (259)
255 2qen_A Walker-type ATPase; unk 41.1 23 0.00079 26.1 3.5 36 41-78 130-170 (350)
256 2vsw_A Dual specificity protei 40.8 3.5 0.00012 27.2 -1.1 36 138-173 78-122 (153)
257 3od5_A Caspase-6; caspase doma 40.8 35 0.0012 25.2 4.3 19 149-167 46-64 (278)
258 3ipz_A Monothiol glutaredoxin- 40.5 61 0.0021 19.7 5.7 33 136-168 15-53 (109)
259 3hn6_A Glucosamine-6-phosphate 40.2 18 0.00062 26.9 2.7 33 16-48 56-95 (289)
260 1qtn_A Caspase-8; apoptosis, d 40.2 33 0.0011 23.1 3.8 20 148-167 54-73 (164)
261 1m72_A Caspase-1; caspase, cys 39.9 36 0.0012 25.0 4.2 20 148-167 55-74 (272)
262 3cs3_A Sugar-binding transcrip 39.9 50 0.0017 23.4 5.0 39 126-164 164-202 (277)
263 3upu_A ATP-dependent DNA helic 39.8 45 0.0016 26.2 5.1 38 124-161 234-275 (459)
264 3m9w_A D-xylose-binding peripl 39.5 66 0.0023 23.3 5.7 41 124-164 173-213 (313)
265 3fmo_B ATP-dependent RNA helic 39.2 42 0.0014 24.7 4.6 60 116-175 135-204 (300)
266 3hcw_A Maltose operon transcri 39.2 64 0.0022 23.2 5.6 42 123-164 174-217 (295)
267 3qhq_A CSN2, SAG0897 family cr 39.0 84 0.0029 22.5 5.9 49 123-171 146-199 (229)
268 1w1w_A Structural maintenance 38.9 17 0.0006 28.4 2.5 42 38-80 354-395 (430)
269 2qz4_A Paraplegin; AAA+, SPG7, 38.5 32 0.0011 24.3 3.7 14 40-53 99-112 (262)
270 2i4i_A ATP-dependent RNA helic 38.0 76 0.0026 24.0 6.0 37 139-175 102-142 (417)
271 3tx2_A Probable 6-phosphogluco 37.2 12 0.0004 27.3 1.2 36 14-49 39-79 (251)
272 3zyw_A Glutaredoxin-3; metal b 37.1 64 0.0022 19.8 4.6 33 136-168 13-51 (111)
273 2qp9_X Vacuolar protein sortin 36.8 35 0.0012 25.9 3.9 15 39-53 143-157 (355)
274 2ipc_A Preprotein translocase 36.4 60 0.002 28.6 5.5 45 133-177 115-163 (997)
275 3miz_A Putative transcriptiona 36.3 44 0.0015 24.1 4.3 37 127-164 186-222 (301)
276 3k4h_A Putative transcriptiona 35.9 57 0.002 23.2 4.8 41 123-164 177-217 (292)
277 2nn3_C Caspase-1; cysteine pro 35.7 45 0.0015 25.1 4.2 29 140-168 62-103 (310)
278 3jy6_A Transcriptional regulat 35.4 51 0.0018 23.3 4.5 39 125-164 168-206 (276)
279 3h5t_A Transcriptional regulat 35.1 55 0.0019 24.4 4.8 39 125-164 255-293 (366)
280 8tfv_A Protein (thanatin); bac 35.0 10 0.00034 15.7 0.3 10 140-149 6-15 (21)
281 1wrb_A DJVLGB; RNA helicase, D 34.8 41 0.0014 23.7 3.8 38 138-175 100-141 (253)
282 3k9c_A Transcriptional regulat 34.8 61 0.0021 23.2 4.8 39 125-164 172-210 (289)
283 3gv0_A Transcriptional regulat 34.7 56 0.0019 23.4 4.6 39 125-164 175-213 (288)
284 3q87_B N6 adenine specific DNA 34.7 53 0.0018 21.6 4.2 46 126-171 104-149 (170)
285 3tb6_A Arabinose metabolism tr 34.7 52 0.0018 23.4 4.4 39 126-164 187-226 (298)
286 3uk6_A RUVB-like 2; hexameric 34.6 36 0.0012 25.5 3.7 14 41-54 191-204 (368)
287 3g85_A Transcriptional regulat 34.3 55 0.0019 23.3 4.5 40 124-164 174-213 (289)
288 3hu3_A Transitional endoplasmi 34.3 28 0.00095 28.0 3.0 44 40-84 298-350 (489)
289 3dbi_A Sugar-binding transcrip 34.1 57 0.002 24.0 4.7 39 125-164 229-267 (338)
290 3jvd_A Transcriptional regulat 34.0 66 0.0023 23.7 5.0 40 123-164 217-256 (333)
291 3kjx_A Transcriptional regulat 34.0 60 0.002 24.0 4.8 39 125-164 234-272 (344)
292 2vk2_A YTFQ, ABC transporter p 34.0 74 0.0025 22.9 5.2 39 126-164 176-216 (306)
293 3h5o_A Transcriptional regulat 33.9 60 0.0021 23.9 4.8 39 125-164 226-264 (339)
294 2r62_A Cell division protease 33.8 17 0.00057 26.1 1.6 14 40-53 104-117 (268)
295 2w58_A DNAI, primosome compone 33.8 29 0.001 23.5 2.8 45 39-84 115-160 (202)
296 3d8u_A PURR transcriptional re 33.7 75 0.0026 22.3 5.1 38 126-164 169-206 (275)
297 3ico_A 6PGL, 6-phosphogluconol 33.5 11 0.00038 27.7 0.5 36 14-49 55-95 (268)
298 4ehd_A Caspase-3; caspase, apo 33.5 43 0.0015 24.7 3.7 20 148-167 68-87 (277)
299 3kl4_A SRP54, signal recogniti 33.1 47 0.0016 26.3 4.1 56 38-94 178-235 (433)
300 2db3_A ATP-dependent RNA helic 33.0 78 0.0027 24.5 5.4 37 138-174 129-169 (434)
301 2rgy_A Transcriptional regulat 32.9 63 0.0022 23.1 4.7 39 125-164 176-214 (290)
302 2fp3_A Caspase NC; apoptosis, 32.9 42 0.0014 25.3 3.7 36 138-174 61-108 (316)
303 2j48_A Two-component sensor ki 32.9 56 0.0019 19.0 3.8 53 116-173 4-56 (119)
304 1u6t_A SH3 domain-binding glut 32.7 17 0.00057 23.4 1.2 30 144-173 12-41 (121)
305 1xwi_A SKD1 protein; VPS4B, AA 32.7 86 0.0029 23.3 5.4 16 39-54 105-120 (322)
306 3oc6_A 6-phosphogluconolactona 32.6 12 0.0004 27.2 0.5 36 14-49 39-79 (248)
307 3l49_A ABC sugar (ribose) tran 32.5 78 0.0027 22.4 5.1 39 125-163 175-215 (291)
308 1jye_A Lactose operon represso 32.4 72 0.0025 23.7 5.0 38 126-164 226-263 (349)
309 3rc3_A ATP-dependent RNA helic 32.4 2E+02 0.0067 24.2 7.9 56 116-173 159-214 (677)
310 2vl7_A XPD; helicase, unknown 32.3 40 0.0014 27.2 3.7 32 128-160 375-406 (540)
311 3hs3_A Ribose operon repressor 32.3 45 0.0015 23.7 3.7 129 13-164 65-203 (277)
312 3bbl_A Regulatory protein of L 32.3 65 0.0022 23.0 4.6 39 125-164 173-213 (287)
313 3f4a_A Uncharacterized protein 32.0 19 0.00066 24.3 1.5 35 139-173 105-147 (169)
314 3dkp_A Probable ATP-dependent 32.0 17 0.0006 25.6 1.4 35 138-172 98-136 (245)
315 3utn_X Thiosulfate sulfurtrans 31.9 65 0.0022 24.3 4.6 35 138-172 275-310 (327)
316 2bjv_A PSP operon transcriptio 31.8 38 0.0013 24.2 3.2 26 40-67 101-126 (265)
317 2h0a_A TTHA0807, transcription 31.4 88 0.003 21.9 5.2 39 125-164 167-205 (276)
318 2c9o_A RUVB-like 1; hexameric 31.3 36 0.0012 26.8 3.2 25 41-67 297-321 (456)
319 3gyb_A Transcriptional regulat 31.2 70 0.0024 22.6 4.6 40 124-164 162-201 (280)
320 3b9p_A CG5977-PA, isoform A; A 31.1 76 0.0026 22.9 4.8 15 40-54 114-128 (297)
321 2qu7_A Putative transcriptiona 31.1 77 0.0026 22.5 4.8 36 126-164 177-212 (288)
322 1y89_A DEVB protein; structura 31.0 34 0.0012 24.4 2.8 28 22-49 40-71 (238)
323 3vfd_A Spastin; ATPase, microt 30.8 32 0.0011 26.4 2.8 13 41-53 209-221 (389)
324 1s2m_A Putative ATP-dependent 30.7 1.5E+02 0.0051 22.2 6.6 59 116-174 62-129 (400)
325 3e3m_A Transcriptional regulat 30.6 55 0.0019 24.4 4.1 39 125-164 237-275 (355)
326 3qkt_A DNA double-strand break 30.6 36 0.0012 25.6 3.0 41 38-79 271-311 (339)
327 3hjh_A Transcription-repair-co 30.6 36 0.0012 27.3 3.1 40 126-166 371-410 (483)
328 1uta_A FTSN, MSGA, cell divisi 30.5 40 0.0014 19.4 2.6 28 141-168 46-76 (81)
329 3ly5_A ATP-dependent RNA helic 30.5 89 0.003 22.2 5.0 37 138-174 126-166 (262)
330 3egc_A Putative ribose operon 30.4 55 0.0019 23.4 3.9 38 126-164 174-211 (291)
331 1w5s_A Origin recognition comp 30.4 28 0.00095 26.5 2.4 16 39-54 138-153 (412)
332 4ad8_A DNA repair protein RECN 29.9 15 0.0005 29.7 0.7 38 41-80 419-456 (517)
333 1qys_A TOP7; alpha-beta, novel 29.9 86 0.0029 18.3 4.8 40 125-164 32-77 (106)
334 3o74_A Fructose transport syst 29.7 85 0.0029 21.9 4.8 41 123-163 164-204 (272)
335 1x60_A Sporulation-specific N- 29.7 43 0.0015 19.0 2.7 22 147-168 55-76 (79)
336 3cf0_A Transitional endoplasmi 29.4 38 0.0013 24.9 2.9 14 40-53 109-122 (301)
337 1gud_A ALBP, D-allose-binding 29.2 92 0.0031 22.2 5.0 39 125-164 180-218 (288)
338 3clk_A Transcription regulator 29.2 73 0.0025 22.7 4.4 37 126-164 174-210 (290)
339 2hsg_A Glucose-resistance amyl 29.1 72 0.0025 23.4 4.4 38 126-164 227-264 (332)
340 2ql9_A Caspase-7; cysteine pro 29.0 37 0.0013 23.2 2.5 17 149-165 69-85 (173)
341 2j0s_A ATP-dependent RNA helic 28.8 1.4E+02 0.0048 22.5 6.2 59 116-174 78-145 (410)
342 2fep_A Catabolite control prot 28.7 80 0.0027 22.5 4.6 38 126-164 183-220 (289)
343 3uug_A Multiple sugar-binding 28.5 93 0.0032 22.6 5.0 41 124-164 187-229 (330)
344 1w4r_A Thymidine kinase; type 28.1 74 0.0025 22.1 4.0 34 38-78 90-123 (195)
345 1e2b_A Enzyme IIB-cellobiose; 28.1 87 0.003 19.2 4.0 36 139-174 4-43 (106)
346 1qpz_A PURA, protein (purine n 28.0 72 0.0025 23.5 4.3 38 126-164 226-263 (340)
347 3brs_A Periplasmic binding pro 28.0 1.2E+02 0.0042 21.3 5.5 39 125-164 177-215 (289)
348 2o20_A Catabolite control prot 27.8 81 0.0028 23.1 4.5 36 126-164 229-264 (332)
349 3bil_A Probable LACI-family tr 27.7 1E+02 0.0035 22.8 5.1 37 125-164 230-266 (348)
350 8abp_A L-arabinose-binding pro 27.5 97 0.0033 22.1 4.9 41 124-164 181-222 (306)
351 1dbq_A Purine repressor; trans 27.2 98 0.0033 21.9 4.8 38 126-164 175-212 (289)
352 2oca_A DAR protein, ATP-depend 27.1 2.2E+02 0.0075 22.3 7.2 60 116-175 132-198 (510)
353 3c3k_A Alanine racemase; struc 27.0 76 0.0026 22.6 4.2 38 126-164 170-209 (285)
354 1r6b_X CLPA protein; AAA+, N-t 26.9 85 0.0029 26.4 4.9 43 40-83 279-324 (758)
355 3ist_A Glutamate racemase; str 26.4 48 0.0016 24.3 2.9 82 15-96 111-202 (269)
356 3nku_A DRRA, SIDM; posttransla 26.1 56 0.0019 21.4 2.8 20 15-34 150-169 (213)
357 3d8b_A Fidgetin-like protein 1 26.0 60 0.0021 24.5 3.6 15 40-54 177-191 (357)
358 3pvs_A Replication-associated 25.9 25 0.00086 27.8 1.4 18 38-55 105-122 (447)
359 2fn9_A Ribose ABC transporter, 25.9 1.4E+02 0.0048 21.0 5.5 38 125-163 178-215 (290)
360 2wci_A Glutaredoxin-4; redox-a 25.8 1.2E+02 0.004 19.5 4.5 31 139-169 35-71 (135)
361 3kke_A LACI family transcripti 25.7 93 0.0032 22.4 4.5 39 125-164 179-222 (303)
362 1ye8_A Protein THEP1, hypothet 25.6 1.5E+02 0.0051 19.8 5.2 29 38-67 98-128 (178)
363 1b4b_A Arginine repressor; cor 25.5 75 0.0026 18.0 3.1 23 138-160 47-69 (71)
364 1sgw_A Putative ABC transporte 25.4 43 0.0015 23.5 2.4 42 37-80 149-190 (214)
365 2zan_A Vacuolar protein sortin 25.3 83 0.0028 24.7 4.3 14 40-53 228-241 (444)
366 1pyo_A Caspase-2; apoptosis, c 25.3 73 0.0025 21.5 3.5 24 149-173 58-81 (167)
367 3ksm_A ABC-type sugar transpor 25.2 1E+02 0.0036 21.4 4.6 39 124-163 173-211 (276)
368 3huu_A Transcription regulator 25.2 51 0.0018 23.8 3.0 38 126-164 189-227 (305)
369 2ioy_A Periplasmic sugar-bindi 25.1 1.5E+02 0.0051 20.9 5.5 37 126-163 171-207 (283)
370 3pfi_A Holliday junction ATP-d 25.0 1E+02 0.0035 22.6 4.7 28 38-67 105-132 (338)
371 1f1j_A Caspase-7 protease; cas 24.9 44 0.0015 25.0 2.5 20 148-167 93-112 (305)
372 2w0m_A SSO2452; RECA, SSPF, un 24.5 39 0.0013 23.1 2.1 14 39-52 121-136 (235)
373 3brq_A HTH-type transcriptiona 24.2 67 0.0023 22.8 3.4 38 126-164 188-225 (296)
374 4fe7_A Xylose operon regulator 24.2 1.2E+02 0.0043 23.0 5.1 38 125-163 190-227 (412)
375 1ofh_A ATP-dependent HSL prote 24.2 1.2E+02 0.0041 21.7 4.8 15 40-54 117-131 (310)
376 1jbw_A Folylpolyglutamate synt 24.1 2.5E+02 0.0085 21.7 9.9 108 43-159 310-424 (428)
377 3hjh_A Transcription-repair-co 24.0 2.3E+02 0.008 22.6 6.7 52 118-170 20-72 (483)
378 1nw9_B Caspase 9, apoptosis-re 23.8 78 0.0027 23.2 3.7 11 126-136 48-58 (277)
379 1hqc_A RUVB; extended AAA-ATPa 23.6 59 0.002 23.7 3.1 28 38-67 89-116 (324)
380 3qua_A Putative uncharacterize 23.6 90 0.0031 21.8 3.8 27 139-165 23-56 (199)
381 2dri_A D-ribose-binding protei 23.6 1.3E+02 0.0043 21.2 4.8 38 125-163 169-206 (271)
382 2xdq_B Light-independent proto 23.5 2.8E+02 0.0097 22.1 8.3 153 11-174 25-209 (511)
383 1e9r_A Conjugal transfer prote 23.5 1.5E+02 0.005 22.9 5.4 41 38-82 278-318 (437)
384 1wik_A Thioredoxin-like protei 23.4 1.3E+02 0.0044 18.1 4.7 29 139-167 15-49 (109)
385 3gbv_A Putative LACI-family tr 23.3 93 0.0032 22.1 4.1 38 124-163 186-223 (304)
386 2wem_A Glutaredoxin-related pr 23.3 1.3E+02 0.0045 18.7 4.3 30 139-168 20-56 (118)
387 2ybo_A Methyltransferase; SUMT 23.1 1.5E+02 0.005 21.8 5.1 26 138-163 185-210 (294)
388 2yan_A Glutaredoxin-3; oxidore 23.0 1.3E+02 0.0043 17.9 4.9 28 139-166 17-50 (105)
389 3pc6_A DNA repair protein XRCC 22.9 36 0.0012 21.1 1.4 37 12-49 63-99 (104)
390 2fvy_A D-galactose-binding per 22.9 1.1E+02 0.0037 21.9 4.4 38 126-163 189-227 (309)
391 2zj8_A DNA helicase, putative 22.9 2.3E+02 0.0078 23.6 6.8 40 138-177 68-110 (720)
392 1s4d_A Uroporphyrin-III C-meth 22.9 1.3E+02 0.0043 22.0 4.7 26 138-163 176-201 (280)
393 3fht_A ATP-dependent RNA helic 22.8 1.5E+02 0.0052 22.1 5.3 59 116-174 68-136 (412)
394 2iks_A DNA-binding transcripti 22.5 76 0.0026 22.6 3.4 38 126-164 185-222 (293)
395 2ri0_A Glucosamine-6-phosphate 22.4 62 0.0021 22.8 2.8 28 21-48 38-65 (234)
396 2i82_A Ribosomal large subunit 22.1 1.6E+02 0.0053 20.5 4.9 33 141-173 68-103 (217)
397 2ce7_A Cell division protein F 22.0 87 0.003 25.0 3.8 15 39-53 108-122 (476)
398 3gh1_A Predicted nucleotide-bi 21.9 2.9E+02 0.0098 22.1 6.6 41 125-165 126-180 (462)
399 1jzt_A Hypothetical 27.5 kDa p 21.7 1.6E+02 0.0055 21.1 4.9 16 150-165 101-116 (246)
400 3d02_A Putative LACI-type tran 21.7 1.9E+02 0.0064 20.5 5.5 38 125-163 176-213 (303)
401 2x7x_A Sensor protein; transfe 21.7 1.5E+02 0.0051 21.5 5.0 37 126-163 176-212 (325)
402 1v9k_A Ribosomal large subunit 21.6 1.6E+02 0.0056 20.6 4.9 34 141-174 59-95 (228)
403 3jx9_A Putative phosphoheptose 21.6 1.1E+02 0.0038 20.7 3.8 34 137-170 77-112 (170)
404 2o0j_A Terminase, DNA packagin 21.6 1.3E+02 0.0044 23.3 4.7 14 39-52 273-286 (385)
405 2gk6_A Regulator of nonsense t 21.5 3.2E+02 0.011 22.4 7.3 54 116-169 199-255 (624)
406 1ojl_A Transcriptional regulat 21.2 76 0.0026 23.4 3.2 25 41-67 98-122 (304)
407 3gx8_A Monothiol glutaredoxin- 21.2 1E+02 0.0034 19.3 3.4 27 138-164 15-47 (121)
408 3eb9_A 6-phosphogluconolactona 21.1 20 0.00069 26.3 -0.0 35 15-49 37-78 (266)
409 3gvp_A Adenosylhomocysteinase 21.1 83 0.0028 24.9 3.5 55 119-173 60-114 (435)
410 2ixe_A Antigen peptide transpo 20.8 89 0.003 22.7 3.5 42 37-79 172-213 (271)
411 2h3h_A Sugar ABC transporter, 20.6 2.1E+02 0.007 20.5 5.5 38 125-163 169-206 (313)
412 1g8p_A Magnesium-chelatase 38 20.5 61 0.0021 24.0 2.6 25 40-66 145-169 (350)
413 1gku_B Reverse gyrase, TOP-RG; 20.5 1.7E+02 0.006 25.9 5.7 40 137-176 98-145 (1054)
414 3g1w_A Sugar ABC transporter; 20.3 2.4E+02 0.0081 20.0 8.9 39 124-163 173-211 (305)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=6.6e-30 Score=205.02 Aligned_cols=169 Identities=25% Similarity=0.372 Sum_probs=152.6
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC-CCCCceEEEEeecCcH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC-SNPSIVRSLFSATLPD 84 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~-~~~~~q~i~~SAT~~~ 84 (178)
..|.+.+.++++|+|+|||+|.+++.++..++++++++|+||||.+++++ |.+.+..|+..+ .+..+|+++||||+|+
T Consensus 170 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 170 RHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG-FSEDMRRIMTHVTMRPEHQTLMFSATFPE 248 (434)
T ss_dssp HHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT-THHHHHHHHHCTTSCSSCEEEEEESCCCH
T ss_pred HHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC-cHHHHHHHHHhcCCCCCceEEEEeccCCH
Confidence 45666777899999999999999999998899999999999999999999 999999999984 3578999999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.+..++..++.++..+.+........++.+.++.+ ....|...+.+++.... .++||||+|++.|+.+++.|.+.|++
T Consensus 249 ~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~ 326 (434)
T 2db3_A 249 EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV-NKYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFP 326 (434)
T ss_dssp HHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC-CGGGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCEEEEeccccccccccceEEEEe-CcHHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCC
Confidence 99999999999999999988777788888888766 55668899999998874 45999999999999999999999999
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++.+|
T Consensus 327 ~~~lhg~~~~~~R 339 (434)
T 2db3_A 327 TTSIHGDRLQSQR 339 (434)
T ss_dssp EEEESTTSCHHHH
T ss_pred EEEEeCCCCHHHH
Confidence 9999999999887
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=1.4e-28 Score=195.21 Aligned_cols=170 Identities=26% Similarity=0.362 Sum_probs=155.3
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
..+.+.+..+++|+|+|||++.+++..+.+.+.+++++|+||||.+.+++ +...+..+++. ++...|++++|||+++.
T Consensus 146 ~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~i~~~-~~~~~~~i~~SAT~~~~ 223 (410)
T 2j0s_A 146 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG-FKEQIYDVYRY-LPPATQVVLISATLPHE 223 (410)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT-THHHHHHHHTT-SCTTCEEEEEESCCCHH
T ss_pred HHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh-hHHHHHHHHHh-CccCceEEEEEcCCCHH
Confidence 34555666789999999999999999988889999999999999999998 99999999998 88899999999999999
Q ss_pred HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCce
Q 030396 86 VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRA 165 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~ 165 (178)
+.++...++.+|..+..........++.+.+..+.....|...+.++++.....++||||+|++.++.+++.|.+.|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~ 303 (410)
T 2j0s_A 224 ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTV 303 (410)
T ss_dssp HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCce
Confidence 99988999999998888777778888999998887777799999999998878899999999999999999999999999
Q ss_pred EeeecCCCcccc
Q 030396 166 GVIHSDLSQTQV 177 (178)
Q Consensus 166 ~~lh~~~~~~~R 177 (178)
..+||+|++++|
T Consensus 304 ~~~h~~~~~~~r 315 (410)
T 2j0s_A 304 SSMHGDMPQKER 315 (410)
T ss_dssp EEECTTSCHHHH
T ss_pred EEeeCCCCHHHH
Confidence 999999999876
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=187.48 Aligned_cols=170 Identities=31% Similarity=0.422 Sum_probs=147.0
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC-CC--CCceEEEEeecC
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC-SN--PSIVRSLFSATL 82 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~-~~--~~~q~i~~SAT~ 82 (178)
.++.+.+.++++|+|+|||++.+++..+.+.+.+++++|+||||.+++++ |.+.+..++... .+ ...|++++|||+
T Consensus 142 ~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~~~i~~SAT~ 220 (417)
T 2i4i_A 142 GQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG-FEPQIRRIVEQDTMPPKGVRHTMMFSATF 220 (417)
T ss_dssp HHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT-CHHHHHHHHTSSSCCCBTTBEEEEEESCC
T ss_pred HHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC-cHHHHHHHHHhccCCCcCCcEEEEEEEeC
Confidence 34556667789999999999999999988889999999999999999999 999999999852 22 368999999999
Q ss_pred cHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhC
Q 030396 83 PDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
++.+..+...++.+|..+..........++.+.++.+ ....|...+.++++.. ...++||||+|++.|+.+++.|.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 299 (417)
T 2i4i_A 221 PKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWV-EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 299 (417)
T ss_dssp CHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEEC-CGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEe-ccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC
Confidence 9999999999999999888887777788888888766 5567889999999876 4678999999999999999999999
Q ss_pred CCceEeeecCCCcccc
Q 030396 162 DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 g~~~~~lh~~~~~~~R 177 (178)
|+.+..+||+|++++|
T Consensus 300 ~~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDR 315 (417)
T ss_dssp TCCEEEECTTSCHHHH
T ss_pred CCCeeEecCCCCHHHH
Confidence 9999999999999877
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=188.07 Aligned_cols=162 Identities=25% Similarity=0.374 Sum_probs=149.2
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
++++|+|+|||++.+++..+.+.+.+++++|+||||.+.+++ +...+..++.. ++.+.|++++|||+++.+......+
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~ 235 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG-FKDQIYDIFQK-LNSNTQVVLLSATMPSDVLEVTKKF 235 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT-THHHHHHHHTT-SCTTCEEEEECSCCCHHHHHHHTTT
T ss_pred CCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC-cHHHHHHHHHh-CCCCCeEEEEEEecCHHHHHHHHHH
Confidence 679999999999999999988889999999999999999988 99999999999 7889999999999999999999999
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+.+|..+...........+.+.+..+.....|...+.++++....+++||||++++.++.+++.|.+.|+.+..+||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~ 315 (414)
T 3eiq_A 236 MRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 315 (414)
T ss_dssp CSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CH
T ss_pred cCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCC
Confidence 99999988888888888899999888888889999999999988899999999999999999999999999999999999
Q ss_pred cccc
Q 030396 174 QTQV 177 (178)
Q Consensus 174 ~~~R 177 (178)
+++|
T Consensus 316 ~~~r 319 (414)
T 3eiq_A 316 QKER 319 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=2.8e-26 Score=181.63 Aligned_cols=163 Identities=24% Similarity=0.286 Sum_probs=149.3
Q ss_pred CCCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
.+++|+|+||+++.+++.+ +.+++.+++++|+||||.+++...+...+..+.+. .+.+.|++++|||+++.+......
T Consensus 142 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~ 220 (412)
T 3fht_A 142 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM-LPRNCQMLLFSATFEDSVWKFAQK 220 (412)
T ss_dssp CCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHT-SCTTCEEEEEESCCCHHHHHHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhh-CCCCceEEEEEeecCHHHHHHHHH
Confidence 4579999999999999965 67788999999999999998843388899999988 888999999999999999999999
Q ss_pred hccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
++.+|..+...........+.+.++.+.....+...+.+++.....+++||||+|++.|+.++..|.+.|+.+..+||+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 300 (412)
T 3fht_A 221 VVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 300 (412)
T ss_dssp HSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTS
T ss_pred hcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 99999999888888888889999988888889999999999988889999999999999999999999999999999999
Q ss_pred Ccccc
Q 030396 173 SQTQV 177 (178)
Q Consensus 173 ~~~~R 177 (178)
++++|
T Consensus 301 ~~~~r 305 (412)
T 3fht_A 301 MVEQR 305 (412)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99887
No 6
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.94 E-value=1.1e-25 Score=177.08 Aligned_cols=163 Identities=26% Similarity=0.367 Sum_probs=149.4
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
.+++|+|+||+++.+.+..+...+.+++++|+||||.+.+...+...+..+.+. .+...|++++|||+++.+......+
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~ 198 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRF-LPKDTQLVLFSATFADAVRQYAKKI 198 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHT-SCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHh-CCCCcEEEEEEecCCHHHHHHHHHh
Confidence 368999999999999999988889999999999999998843388889999988 7889999999999999999999999
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+.++..+...........+.+.+..+.....+...+..++.....+++||||++++.|+.+++.|.+.|+++..+||+|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 278 (395)
T 3pey_A 199 VPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQ 278 (395)
T ss_dssp SCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSC
T ss_pred CCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCC
Confidence 99998888877777888888888888888889999999999888899999999999999999999999999999999999
Q ss_pred cccc
Q 030396 174 QTQV 177 (178)
Q Consensus 174 ~~~R 177 (178)
+++|
T Consensus 279 ~~~r 282 (395)
T 3pey_A 279 TQER 282 (395)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.93 E-value=2e-25 Score=175.79 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=142.1
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
.+++|+|+||+++.+++..+...+.+++++|+||||.+.++..+...+..+++. .+...|++++|||+++.+...+..+
T Consensus 127 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~ 205 (391)
T 1xti_A 127 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM-TPHEKQVMMFSATLSKEIRPVCRKF 205 (391)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHT-SCSSSEEEEEESSCCSTHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhh-CCCCceEEEEEeeCCHHHHHHHHHH
Confidence 458999999999999999988889999999999999998852288889999988 7889999999999999999999999
Q ss_pred ccCcEEEEEcCCc-cccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 94 MHDAVRVIVGRKN-TASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 94 ~~~~~~v~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
+.+|..+...... .....+.+.+..+ ....|...+.++++....+++||||++++.|+.+++.|.+.|+++..+||+|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 284 (391)
T 1xti_A 206 MQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 284 (391)
T ss_dssp CSSCEEEECCCCCCCCCTTCEEEEEEC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cCCCeEEEecCccccCcccceEEEEEc-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 9999888776543 3445666766555 5667889999999988889999999999999999999999999999999999
Q ss_pred Ccccc
Q 030396 173 SQTQV 177 (178)
Q Consensus 173 ~~~~R 177 (178)
++++|
T Consensus 285 ~~~~r 289 (391)
T 1xti_A 285 PQEER 289 (391)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98876
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=187.71 Aligned_cols=163 Identities=24% Similarity=0.286 Sum_probs=80.0
Q ss_pred CCCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
.+++|+|||||++.+++.+ +.+++.+++++|+||+|.+++...+...+..+.+. .+...|++++|||++..+..+...
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~ 287 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM-LPRNCQMLLFSATFEDSVWKFAQK 287 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTT-SCTTSEEEEEESCCCHHHHHHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhh-CCccceEEEEeCCCCHHHHHHHHH
Confidence 3578999999999999965 66788999999999999998743388888889888 788999999999999999999999
Q ss_pred hccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
++.+|..+...........+.+.++.+.....+...+..++......++||||+|++.|+.++..|...|+.+..+||+|
T Consensus 288 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~ 367 (479)
T 3fmp_B 288 VVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 367 (479)
T ss_dssp HSSSEEEEEEC---------------------------------------------------------------------
T ss_pred HcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCC
Confidence 99999999998888888889998888877778999999999888788999999999999999999999999999999999
Q ss_pred Ccccc
Q 030396 173 SQTQV 177 (178)
Q Consensus 173 ~~~~R 177 (178)
++.+|
T Consensus 368 ~~~~R 372 (479)
T 3fmp_B 368 MVEQR 372 (479)
T ss_dssp -----
T ss_pred CHHHH
Confidence 99887
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.93 E-value=2.7e-25 Score=175.71 Aligned_cols=167 Identities=25% Similarity=0.284 Sum_probs=145.3
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
++...+..+++|+|+||+++.+++..+...+.+++++|+||||.+.+.+ +...+..++.. .+...|++++|||++..+
T Consensus 131 ~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~~~~i~~~-~~~~~~~i~lSAT~~~~~ 208 (400)
T 1s2m_A 131 DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD-FKTIIEQILSF-LPPTHQSLLFSATFPLTV 208 (400)
T ss_dssp HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH-HHHHHHHHHTT-SCSSCEEEEEESCCCHHH
T ss_pred HHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc-hHHHHHHHHHh-CCcCceEEEEEecCCHHH
Confidence 3444556789999999999999999888889999999999999998888 88999999988 788899999999999999
Q ss_pred HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 87 EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
...+..++.+|..+.... .....++.+++..+ ....|...+..+++....+++||||++++.++.+++.|.+.|+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~ 286 (400)
T 1s2m_A 209 KEFMVKHLHKPYEINLME-ELTLKGITQYYAFV-EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCY 286 (400)
T ss_dssp HHHHHHHCSSCEEESCCS-SCBCTTEEEEEEEC-CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCeEEEecc-ccccCCceeEEEEe-chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeE
Confidence 999999999987775543 34556677776555 5667889999999988888999999999999999999999999999
Q ss_pred eeecCCCcccc
Q 030396 167 VIHSDLSQTQV 177 (178)
Q Consensus 167 ~lh~~~~~~~R 177 (178)
.+||+|++++|
T Consensus 287 ~~~~~~~~~~r 297 (400)
T 1s2m_A 287 YSHARMKQQER 297 (400)
T ss_dssp EECTTSCHHHH
T ss_pred EecCCCCHHHH
Confidence 99999998876
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.93 E-value=3.2e-26 Score=180.36 Aligned_cols=161 Identities=28% Similarity=0.416 Sum_probs=82.7
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
+++|+|+||+++.+.+..+...+.+++++|+||||.+.+++ +...+..++.. .+...|++++|||+++.+......++
T Consensus 138 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~-~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~ 215 (394)
T 1fuu_A 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG-FKEQIYQIFTL-LPPTTQVVLLSATMPNDVLEVTTKFM 215 (394)
T ss_dssp HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT-CHHHHHHHHHH-SCTTCEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC-cHHHHHHHHHh-CCCCceEEEEEEecCHHHHHHHHHhc
Confidence 68999999999999999888889999999999999999988 99999999999 78899999999999999999999999
Q ss_pred cCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 95 ~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+|..+..........++.+.+..+.....+...+.++++....+++||||+|++.++.+++.|.+.|+.+..+||+|++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 295 (394)
T 1fuu_A 216 RNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQ 295 (394)
T ss_dssp CSCEEEEECC----------------------------------------------------------------------
T ss_pred CCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCH
Confidence 99999988877777778888887776666688888888888778899999999999999999999999999999999999
Q ss_pred ccc
Q 030396 175 TQV 177 (178)
Q Consensus 175 ~~R 177 (178)
++|
T Consensus 296 ~~r 298 (394)
T 1fuu_A 296 QER 298 (394)
T ss_dssp ---
T ss_pred HHH
Confidence 887
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.1e-23 Score=164.08 Aligned_cols=155 Identities=32% Similarity=0.453 Sum_probs=136.5
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
+++|+|+||+++.+.+..+...+.+++++|+||||.+.+++ +...+..++.. .+...|++++|||.++........++
T Consensus 123 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~ 200 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG-FIKDVEKILNA-CNKDKRILLFSATMPREILNLAKKYM 200 (367)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT-THHHHHHHHHT-SCSSCEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc-hHHHHHHHHHh-CCCCceEEEEeeccCHHHHHHHHHHc
Confidence 68999999999999999988889999999999999999988 99999999998 78899999999999999999999999
Q ss_pred cCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 95 ~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.++..+.... ...+.+.++.+ ....+...+.++++. ...++||||+|++.++.+++.|.+.|+++..+||++++
T Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 274 (367)
T 1hv8_A 201 GDYSFIKAKI----NANIEQSYVEV-NENERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQ 274 (367)
T ss_dssp CSEEEEECCS----SSSSEEEEEEC-CGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCH
T ss_pred CCCeEEEecC----CCCceEEEEEe-ChHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCH
Confidence 9877665433 23566666555 566788888888874 47899999999999999999999999999999999998
Q ss_pred ccc
Q 030396 175 TQV 177 (178)
Q Consensus 175 ~~R 177 (178)
++|
T Consensus 275 ~~r 277 (367)
T 1hv8_A 275 SQR 277 (367)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 12
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.8e-24 Score=176.58 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=136.2
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
.+++|+|+||+++.+.+..+...+.+++++|+||+|.+.+...+...+..+.+. .+.+.|++++|||+++.+..+...+
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~-~~~~~~~i~lSAT~~~~~~~~~~~~ 312 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL-LPRNTQIVLFSATFSERVEKYAERF 312 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHH-SCTTCEEEEEESCCSTHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHh-CCcCCeEEEEeCCCCHHHHHHHHHh
Confidence 368999999999999999988889999999999999998843389999999999 7889999999999999999999999
Q ss_pred ccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+.++..+...........+.+.+..+.....+...+..+++....+++||||++++.|+.++..|.+.|+.+..+||+|+
T Consensus 313 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~ 392 (508)
T 3fho_A 313 APNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLE 392 (508)
T ss_dssp STTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC----
T ss_pred cCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 99998888877777778888888888777889999999998888899999999999999999999999999999999999
Q ss_pred cccc
Q 030396 174 QTQV 177 (178)
Q Consensus 174 ~~~R 177 (178)
+.+|
T Consensus 393 ~~~R 396 (508)
T 3fho_A 393 GAQR 396 (508)
T ss_dssp -CTT
T ss_pred HHHH
Confidence 9887
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.92 E-value=9.1e-25 Score=180.79 Aligned_cols=170 Identities=27% Similarity=0.350 Sum_probs=133.0
Q ss_pred HhHHhc-cCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEEEE
Q 030396 7 RSTDLS-KFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRSLF 78 (178)
Q Consensus 7 ~q~~~l-~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i~~ 78 (178)
.+.+.+ ..+++|+|+|||+|.+++.+. ...++.++++|+||||.+++++ |.+.+..|+..+ .+...|++++
T Consensus 141 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g-f~~~~~~i~~~l~~~~~~~~~~~~~l~~ 219 (579)
T 3sqw_A 141 AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG-FRDDLETISGILNEKNSKSADNIKTLLF 219 (579)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT-THHHHHHHHHHHHHHCSSCTTCCEEEEE
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCC-CHHHHHHHHHHhhhhhcccccCceEEEE
Confidence 344444 347999999999999998764 4568889999999999999999 999999998773 1236799999
Q ss_pred eecCcHHHHHHHHHhccCcEEEEEcCC----ccccCCceEEEEEcCChhhHH----HHHHHHHHh-cCCCCEEEEeCCch
Q 030396 79 SATLPDFVEELARSIMHDAVRVIVGRK----NTASESIKQKLVFAGSEEGKL----LALRQSFAE-SLNPPVLIFVQSKD 149 (178)
Q Consensus 79 SAT~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~i~~~~~~~~~~~~k~----~~l~~ll~~-~~~~~~lIF~~t~~ 149 (178)
|||+++.+..++..++.+|..+.+... ......+.+.++.......+. ..+...+.. ....++||||+|++
T Consensus 220 SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~ 299 (579)
T 3sqw_A 220 SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 299 (579)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHH
T ss_pred eccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHH
Confidence 999999999999999998877766432 334455677776665544333 223333333 45678999999999
Q ss_pred HHHHHHHHhhhC---CCceEeeecCCCcccc
Q 030396 150 RAKELYGELAFD---DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 150 ~~~~l~~~L~~~---g~~~~~lh~~~~~~~R 177 (178)
.|+.+++.|.+. |+++..+||+|++++|
T Consensus 300 ~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 300 FTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 999999999876 9999999999999887
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=1.9e-24 Score=178.06 Aligned_cols=164 Identities=29% Similarity=0.364 Sum_probs=130.2
Q ss_pred cCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEEEEeecCcHH
Q 030396 13 KFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRSLFSATLPDF 85 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i~~SAT~~~~ 85 (178)
..+++|+|+|||++.+++.+. ...++.++++|+||||.+++++ |.+.+..|+..+ .....|++++|||+++.
T Consensus 199 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~-f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~ 277 (563)
T 3i5x_A 199 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG-FRDDLETISGILNEKNSKSADNIKTLLFSATLDDK 277 (563)
T ss_dssp HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT-THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH
T ss_pred cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccc-hHHHHHHHHHhhhhccccCccCceEEEEEccCCHH
Confidence 458999999999999998764 3457889999999999999999 999999998763 12378999999999999
Q ss_pred HHHHHHHhccCcEEEEEcCC----ccccCCceEEEEEcCChhhHHHHHH----HHHHh-cCCCCEEEEeCCchHHHHHHH
Q 030396 86 VEELARSIMHDAVRVIVGRK----NTASESIKQKLVFAGSEEGKLLALR----QSFAE-SLNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~----~~~~~~i~~~~~~~~~~~~k~~~l~----~ll~~-~~~~~~lIF~~t~~~~~~l~~ 156 (178)
+..+...++.+|..+..... ......+.+.+........+...+. ..+.. ....++||||+|++.|+.++.
T Consensus 278 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~ 357 (563)
T 3i5x_A 278 VQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCS 357 (563)
T ss_dssp HHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHH
Confidence 99999999998877765432 3344556777766655444433332 33332 456799999999999999999
Q ss_pred HhhhC---CCceEeeecCCCcccc
Q 030396 157 ELAFD---DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 157 ~L~~~---g~~~~~lh~~~~~~~R 177 (178)
.|.+. |+++..+||+|++.+|
T Consensus 358 ~L~~~~~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 358 ILKNEFKKDLPILEFHGKITQNKR 381 (563)
T ss_dssp HHHHHHTTTSCEEEESTTSCHHHH
T ss_pred HHHHhccCCceEEEecCCCCHHHH
Confidence 99876 9999999999999887
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=9.2e-22 Score=151.73 Aligned_cols=151 Identities=25% Similarity=0.423 Sum_probs=128.2
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
+++|+|+||+++.+.+..+.+++.+++++|+||||.+.+++ +...+..++.. .+...+++++|||+++.+......++
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-~~~~~~~~~~~-~~~~~~~~~~SAT~~~~~~~~~~~~~ 182 (337)
T 2z0m_A 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG-FIDDIKIILAQ-TSNRKITGLFSATIPEEIRKVVKDFI 182 (337)
T ss_dssp TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT-CHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHHHHS
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc-cHHHHHHHHhh-CCcccEEEEEeCcCCHHHHHHHHHhc
Confidence 58999999999999999888889999999999999999999 99999999999 78889999999999999999999999
Q ss_pred cCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 95 ~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.++..+... ....++.+.++.+.+... ...+.+.....+++||||++++.++.+++.|. .+..+||+|++
T Consensus 183 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~ 252 (337)
T 2z0m_A 183 TNYEEIEAC---IGLANVEHKFVHVKDDWR---SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQ 252 (337)
T ss_dssp CSCEEEECS---GGGGGEEEEEEECSSSSH---HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCH
T ss_pred CCceeeecc---cccCCceEEEEEeChHHH---HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCH
Confidence 988766432 345566777766654432 22356666778899999999999999999987 68899999998
Q ss_pred ccc
Q 030396 175 TQV 177 (178)
Q Consensus 175 ~~R 177 (178)
.+|
T Consensus 253 ~~r 255 (337)
T 2z0m_A 253 SVR 255 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=7.4e-22 Score=163.55 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=122.6
Q ss_pred cCCCcEEEeCcHHHHH---HHH--cCCCCCCCeeEEEEeccccccccC-CChhhHHH--HHhhCCCCCceEEEEeecCcH
Q 030396 13 KFSCDILISTPLRLRL---AIR--RKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDP--VVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~---~l~--~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~--i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..+++|+|+||++|.. ++. .+...+.+++++|+||||.+.++| .|.+.+.. ++.. ..++.|++++|||.++
T Consensus 134 ~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~-~~~~~~ii~lSAT~~~ 212 (591)
T 2v1x_A 134 NSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR-QFPNASLIGLTATATN 212 (591)
T ss_dssp TCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHH-HCTTSEEEEEESSCCH
T ss_pred cCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHH-hCCCCcEEEEecCCCH
Confidence 4679999999998752 221 123457889999999999999987 57787765 3444 3457999999999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC-hhhHHHHHHHHHHh-cCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 85 FVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS-EEGKLLALRQSFAE-SLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~-~~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
.+...+..++..+..+... .....+++...+..... ...+...+.+++.. ....++||||+|++.|+.++..|...|
T Consensus 213 ~v~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g 291 (591)
T 2v1x_A 213 HVLTDAQKILCIEKCFTFT-ASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG 291 (591)
T ss_dssp HHHHHHHHHTTCCSCEEEE-CCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCcEEEe-cCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC
Confidence 9888888887754333222 23344555554443322 34567778888764 356789999999999999999999999
Q ss_pred CceEeeecCCCcccc
Q 030396 163 IRAGVIHSDLSQTQV 177 (178)
Q Consensus 163 ~~~~~lh~~~~~~~R 177 (178)
+.+..+||+|++++|
T Consensus 292 ~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 292 IHAGAYHANLEPEDK 306 (591)
T ss_dssp CCEEEECTTSCHHHH
T ss_pred CCEEEecCCCCHHHH
Confidence 999999999999887
No 17
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.7e-21 Score=170.71 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=125.7
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH--HHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF--VEELA 90 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~--~~~~~ 90 (178)
..+++|+|+|||+|.+++.++...+.+++++|+||||.+.+++ +...+..++.. ++...|++++|||+|+. +..++
T Consensus 264 ~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~-rg~~~e~ii~~-l~~~~qvl~lSATipn~~e~a~~l 341 (1108)
T 3l9o_A 264 NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE-RGVVWEETIIL-LPDKVRYVFLSATIPNAMEFAEWI 341 (1108)
T ss_dssp CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH-HHHHHHHHHHH-SCTTSEEEEEECSCSSCHHHHHHH
T ss_pred CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc-hHHHHHHHHHh-cCCCceEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999988888999999999999999988 99999999999 88899999999999864 55777
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCCh------------------------------------------------
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSE------------------------------------------------ 122 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~------------------------------------------------ 122 (178)
......|..+........ .+.++++.....
T Consensus 342 ~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 419 (1108)
T 3l9o_A 342 CKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGG 419 (1108)
T ss_dssp HHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC------------------------
T ss_pred HhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccc
Confidence 777777766665443322 233333221100
Q ss_pred ------hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc--------------------------------
Q 030396 123 ------EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR-------------------------------- 164 (178)
Q Consensus 123 ------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~-------------------------------- 164 (178)
..+...+...+......++||||+|++.|+.++..|...|+.
T Consensus 420 ~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 499 (1108)
T 3l9o_A 420 SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHI 499 (1108)
T ss_dssp -----CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
Confidence 234445555666666789999999999999999999765543
Q ss_pred -------eEeeecCCCcccc
Q 030396 165 -------AGVIHSDLSQTQV 177 (178)
Q Consensus 165 -------~~~lh~~~~~~~R 177 (178)
+..+||+|++.+|
T Consensus 500 ~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 500 LPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp THHHHHTEEEECSCSCHHHH
T ss_pred HHhhhcCeeeecCCCCHHHH
Confidence 7899999999876
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.86 E-value=5.8e-21 Score=156.32 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=118.2
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHHHH---HhhCCCCCceEEEEeecCcHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDPV---VKACSNPSIVRSLFSATLPDFVEE 88 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~i---~~~~~~~~~q~i~~SAT~~~~~~~ 88 (178)
.+.++|+++||+++........+...+++++|+||||.+.++| .|.+.+..+ .+. . ++.+++++|||.++.+..
T Consensus 113 ~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~-~-~~~~~i~lSAT~~~~~~~ 190 (523)
T 1oyw_A 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR-F-PTLPFMALTATADDTTRQ 190 (523)
T ss_dssp HTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH-C-TTSCEEEEESCCCHHHHH
T ss_pred cCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh-C-CCCCEEEEeCCCCHHHHH
Confidence 4679999999999863322222345789999999999999887 577776654 333 2 468999999999998766
Q ss_pred HHHHhc--cCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 89 LARSIM--HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 89 ~~~~~~--~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
.+..++ .+|..+. . ....+++...+. ...++...+.+++......++||||+|++.|+.+++.|...|+++.
T Consensus 191 ~i~~~l~~~~~~~~~-~--~~~r~~l~~~v~---~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~ 264 (523)
T 1oyw_A 191 DIVRLLGLNDPLIQI-S--SFDRPNIRYMLM---EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAA 264 (523)
T ss_dssp HHHHHHTCCSCEEEE-C--CCCCTTEEEEEE---ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHhCCCCCeEEe-C--CCCCCceEEEEE---eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEE
Confidence 555444 3554332 2 223445544333 2345778888888887788999999999999999999999999999
Q ss_pred eeecCCCcccc
Q 030396 167 VIHSDLSQTQV 177 (178)
Q Consensus 167 ~lh~~~~~~~R 177 (178)
.+||+|++++|
T Consensus 265 ~~h~~l~~~~R 275 (523)
T 1oyw_A 265 AYHAGLENNVR 275 (523)
T ss_dssp EECTTSCHHHH
T ss_pred EecCCCCHHHH
Confidence 99999999887
No 19
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-19 Score=157.55 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=121.8
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH--HHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV--EELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~--~~~~~ 91 (178)
.+++|+|+|||+|.+++.++...+++++++|+||+|.+.+++ +...++.++.. ++...|++++|||+|+.. ..++.
T Consensus 167 ~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~-rg~~~e~il~~-l~~~~~il~LSATi~n~~e~a~~l~ 244 (1010)
T 2xgj_A 167 PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE-RGVVWEETIIL-LPDKVRYVFLSATIPNAMEFAEWIC 244 (1010)
T ss_dssp TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT-THHHHHHHHHH-SCTTCEEEEEECCCTTHHHHHHHHH
T ss_pred CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccc-hhHHHHHHHHh-cCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999888889999999999999999988 88999999999 788999999999998753 34555
Q ss_pred HhccCcEEEEEcCCccccCCceEEEEEcC--------C-h----------------------------------------
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLVFAG--------S-E---------------------------------------- 122 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~~~~--------~-~---------------------------------------- 122 (178)
...+.+..+...... +..+.++++... + .
T Consensus 245 ~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~ 322 (1010)
T 2xgj_A 245 KIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGS 322 (1010)
T ss_dssp HHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------
T ss_pred hhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccccccccc
Confidence 455666666554332 233444443211 0 0
Q ss_pred -----hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc---------------------------------
Q 030396 123 -----EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR--------------------------------- 164 (178)
Q Consensus 123 -----~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~--------------------------------- 164 (178)
......+...+......++||||+|++.|+.++..|...|+.
T Consensus 323 ~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~ 402 (1010)
T 2xgj_A 323 AKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHIL 402 (1010)
T ss_dssp ------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHH
Confidence 112334555555555679999999999999999999886653
Q ss_pred ------eEeeecCCCcccc
Q 030396 165 ------AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ------~~~lh~~~~~~~R 177 (178)
+..+||+|++.+|
T Consensus 403 ~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 403 PLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp HHHHHTEEEESTTSCHHHH
T ss_pred HHHhCCeeEECCCCCHHHH
Confidence 7889999999876
No 20
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.84 E-value=3.1e-21 Score=153.40 Aligned_cols=153 Identities=19% Similarity=0.232 Sum_probs=116.6
Q ss_pred HHhHHhccCC-CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccc----------c-cCCChhh-HHHHHhhCCC--
Q 030396 6 VRSTDLSKFS-CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF----------E-VGNLLKH-IDPVVKACSN-- 70 (178)
Q Consensus 6 ~~q~~~l~~~-~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll----------~-~~~~~~~-i~~i~~~~~~-- 70 (178)
.++.+.+..+ ++|+|+|||++.+++.. +.+.+++++|+||||.+. + .+ |.+. +..+++. ++
T Consensus 107 ~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~-~~~~~~~~i~~~-~~~~ 182 (414)
T 3oiy_A 107 EKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG-IPEEIIRKAFST-IKQG 182 (414)
T ss_dssp HHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT-CCHHHHHHHHHH-HHHT
T ss_pred HHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcC-CcHHHHHHHHHh-cccc
Confidence 4556666655 99999999999988875 667799999999997654 4 66 8888 8888887 54
Q ss_pred ---------CCceEEEEeec-CcHHHH-HHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCC
Q 030396 71 ---------PSIVRSLFSAT-LPDFVE-ELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNP 139 (178)
Q Consensus 71 ---------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~ 139 (178)
...|++++||| .|..+. .+...++. +..........++.+.++.+ ++...+.++++.. ..
T Consensus 183 ~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~l~~~-~~ 253 (414)
T 3oiy_A 183 KIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSKEKLVELLEIF-RD 253 (414)
T ss_dssp CCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS----CCHHHHHHHHHHH-CS
T ss_pred hhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc----CHHHHHHHHHHHc-CC
Confidence 78999999999 565544 33333333 22334445566777777544 3556677777774 58
Q ss_pred CEEEEeCCchHHHHHHHHhhhCCCceE-eeecC
Q 030396 140 PVLIFVQSKDRAKELYGELAFDDIRAG-VIHSD 171 (178)
Q Consensus 140 ~~lIF~~t~~~~~~l~~~L~~~g~~~~-~lh~~ 171 (178)
++||||+|++.|+.++..|...|+++. .+||+
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 999999999999999999999999998 99985
No 21
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.83 E-value=3.2e-20 Score=137.88 Aligned_cols=98 Identities=31% Similarity=0.434 Sum_probs=89.6
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
..+.+.+.++++|+|+|||++.+++..+..++++++++|+||||.+++++ |.+.+..+++. ++.+.|++++|||+|+.
T Consensus 143 ~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~-~~~~~~~i~~~-~~~~~q~~~~SAT~~~~ 220 (242)
T 3fe2_A 143 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG-FEPQIRKIVDQ-IRPDRQTLMWSATWPKE 220 (242)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT-CHHHHHHHHTT-SCSSCEEEEEESCCCHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC-cHHHHHHHHHh-CCccceEEEEEeecCHH
Confidence 34555666789999999999999999988899999999999999999999 99999999999 78899999999999999
Q ss_pred HHHHHHHhccCcEEEEEcCC
Q 030396 86 VEELARSIMHDAVRVIVGRK 105 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~ 105 (178)
+..+++.++++|..+.++..
T Consensus 221 ~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 221 VRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHHCCCCEEEEecCC
Confidence 99999999999999988754
No 22
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.82 E-value=3.3e-19 Score=154.98 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=120.0
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH--HHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV--EELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~--~~~~~ 91 (178)
..++|+|+|||+|.+++..+...+.+++++|+||||.+.+++ +...++.++.. ++...|++++|||+++.. ..++.
T Consensus 122 ~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~-~g~~~e~ii~~-l~~~v~iIlLSAT~~n~~ef~~~l~ 199 (997)
T 4a4z_A 122 PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQD-RGVVWEEVIIM-LPQHVKFILLSATVPNTYEFANWIG 199 (997)
T ss_dssp TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTC-TTCCHHHHHHH-SCTTCEEEEEECCCTTHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccc-hHHHHHHHHHh-cccCCCEEEEcCCCCChHHHHHHHh
Confidence 458999999999999999888888999999999999999998 99999999999 888999999999998643 22332
Q ss_pred HhccCcEEEEEcCCccccCCceEEEE------------------------------------------------------
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLV------------------------------------------------------ 117 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~------------------------------------------------------ 117 (178)
.....+..+...... +..+.+++.
T Consensus 200 ~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (997)
T 4a4z_A 200 RTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGG 277 (997)
T ss_dssp HHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------------
T ss_pred cccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 222233333222111 111111111
Q ss_pred --------------------------------------EcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhh
Q 030396 118 --------------------------------------FAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 118 --------------------------------------~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~ 159 (178)
.......+...+...+......++||||+|++.|+.++..|.
T Consensus 278 ~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~ 357 (997)
T 4a4z_A 278 SNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLE 357 (997)
T ss_dssp ---------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHh
Confidence 111223456678888888878899999999999999999998
Q ss_pred hCCC---------------------------------------ceEeeecCCCcccc
Q 030396 160 FDDI---------------------------------------RAGVIHSDLSQTQV 177 (178)
Q Consensus 160 ~~g~---------------------------------------~~~~lh~~~~~~~R 177 (178)
..|+ .+..+||+|++.+|
T Consensus 358 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 358 GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 8777 47899999999776
No 23
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.82 E-value=8.9e-20 Score=136.22 Aligned_cols=109 Identities=31% Similarity=0.521 Sum_probs=87.4
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC-CCC--CceEEEEeecC
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC-SNP--SIVRSLFSATL 82 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~-~~~--~~q~i~~SAT~ 82 (178)
.++.+.+..+++|+|+|||++.+++..+..++++++++|+||||.+++++ |.+.+..+++.+ .+. ..|++++|||+
T Consensus 141 ~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 141 HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG-FEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT-CHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc-hHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 34556667889999999999999999988899999999999999999999 999999999963 333 78999999999
Q ss_pred cHHHHHHHHHhccCcEEEEEcCCccccCCceEE
Q 030396 83 PDFVEELARSIMHDAVRVIVGRKNTASESIKQK 115 (178)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~ 115 (178)
++.+.+++..++.+|..+.++.......++.|+
T Consensus 220 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 220 PKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp CHHHHHHHHHHCSSCEEEEEC------------
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 999999999999999999998877777777765
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.82 E-value=1.9e-20 Score=164.12 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=119.5
Q ss_pred HHhHHhccCC-CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccc----------ccc-cCCChhh-HHHHHhhCCC--
Q 030396 6 VRSTDLSKFS-CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADK----------LFE-VGNLLKH-IDPVVKACSN-- 70 (178)
Q Consensus 6 ~~q~~~l~~~-~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~----------ll~-~~~~~~~-i~~i~~~~~~-- 70 (178)
.++.+.+.++ ++|+|||||+|.+++.. +++++++++|+||||. +++ +| |.+. +..+++. ++
T Consensus 164 ~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g-f~~~~i~~il~~-l~~~ 239 (1104)
T 4ddu_A 164 EKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG-IPEEIIRKAFST-IKQG 239 (1104)
T ss_dssp HHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS-CCHHHHHHHHHH-HHHT
T ss_pred HHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcC-CCHHHHHHHHHh-cccc
Confidence 5566667665 99999999999988875 6678999999999965 555 78 8888 8899987 55
Q ss_pred ---------CCceEEEEeec-CcHHHHH-HHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCC
Q 030396 71 ---------PSIVRSLFSAT-LPDFVEE-LARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNP 139 (178)
Q Consensus 71 ---------~~~q~i~~SAT-~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~ 139 (178)
...|++++||| .|..+.. +....+. +.+......+.++.+.++.+ +|...+.++++.. .+
T Consensus 240 ~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~~~L~~ll~~~-~~ 310 (1104)
T 4ddu_A 240 KIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSKEKLVELLEIF-RD 310 (1104)
T ss_dssp SCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCHHHHHHHHHHH-CS
T ss_pred hhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHHHHHHHHHHhc-CC
Confidence 78999999999 5655442 3333333 44445556677888887655 3556677777775 58
Q ss_pred CEEEEeCCchHHHHHHHHhhhCCCceE-eeecC
Q 030396 140 PVLIFVQSKDRAKELYGELAFDDIRAG-VIHSD 171 (178)
Q Consensus 140 ~~lIF~~t~~~~~~l~~~L~~~g~~~~-~lh~~ 171 (178)
++||||||++.|+.++..|...|+++. .+||+
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~ 343 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 343 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc
Confidence 999999999999999999999999998 99993
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=132.11 Aligned_cols=93 Identities=31% Similarity=0.429 Sum_probs=85.4
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
.+.+.+.++++|+|+|||++.+++..+..++++++++|+||||.+++++ |.+.+..+++. .+.+.|++++|||+|+.+
T Consensus 135 ~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~ 212 (228)
T 3iuy_A 135 GQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME-FEPQIRKILLD-VRPDRQTVMTSATWPDTV 212 (228)
T ss_dssp -CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT-CHHHHHHHHHH-SCSSCEEEEEESCCCHHH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc-hHHHHHHHHHh-CCcCCeEEEEEeeCCHHH
Confidence 4455666789999999999999999988899999999999999999999 99999999999 788999999999999999
Q ss_pred HHHHHHhccCcEEEE
Q 030396 87 EELARSIMHDAVRVI 101 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~ 101 (178)
++++..++++|..+.
T Consensus 213 ~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 213 RQLALSYLKDPMIVY 227 (228)
T ss_dssp HHHHHTTCSSCEEEE
T ss_pred HHHHHHHCCCCEEEe
Confidence 999999999998775
No 26
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.80 E-value=1.2e-20 Score=158.92 Aligned_cols=164 Identities=20% Similarity=0.294 Sum_probs=115.1
Q ss_pred ccCCCcEEEeCcHHH-HHHHHcC------CCCCCCeeEEEEecccccc-ccC--------------CChhhHHHHHhhCC
Q 030396 12 SKFSCDILISTPLRL-RLAIRRK------KIDLSRVEYLVLDEADKLF-EVG--------------NLLKHIDPVVKACS 69 (178)
Q Consensus 12 l~~~~~Iii~TP~~l-~~~l~~~------~~~~~~l~~lViDE~d~ll-~~~--------------~~~~~i~~i~~~~~ 69 (178)
...+|||+|||||+| .++++.+ .+.++.++++|+||||.|+ +.+ .|.+.+..|++. +
T Consensus 169 ~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~-l 247 (844)
T 1tf5_A 169 EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRT-L 247 (844)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTT-C
T ss_pred HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHh-C
Confidence 345799999999999 6777643 3668999999999999998 553 156889999999 5
Q ss_pred C---------CCceEE-----------------EEeecCcH---HHHHHHH--Hhcc-CcEEE-------EE--------
Q 030396 70 N---------PSIVRS-----------------LFSATLPD---FVEELAR--SIMH-DAVRV-------IV-------- 102 (178)
Q Consensus 70 ~---------~~~q~i-----------------~~SAT~~~---~~~~~~~--~~~~-~~~~v-------~~-------- 102 (178)
+ ..+|+. +||||.+. .+...+. .++. ++..+ .+
T Consensus 248 ~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m 327 (844)
T 1tf5_A 248 KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM 327 (844)
T ss_dssp CSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBC
T ss_pred cccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccccc
Confidence 5 478887 89999874 3433322 2222 22111 00
Q ss_pred ---------------------cCCccccCCce----------------------------------------------E-
Q 030396 103 ---------------------GRKNTASESIK----------------------------------------------Q- 114 (178)
Q Consensus 103 ---------------------~~~~~~~~~i~----------------------------------------------~- 114 (178)
.....+...+. +
T Consensus 328 ~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~ 407 (844)
T 1tf5_A 328 KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRP 407 (844)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECC
T ss_pred CCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCC
Confidence 00000000111 1
Q ss_pred EEEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 115 KLVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 115 ~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.++++ ...+|...+.+.+.. ...+++||||+|++.++.++..|...|+++..+||++.+++|
T Consensus 408 d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr 471 (844)
T 1tf5_A 408 DLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREA 471 (844)
T ss_dssp CEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHH
T ss_pred cEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHH
Confidence 13333 566788999888864 246789999999999999999999999999999999887765
No 27
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.79 E-value=7.7e-20 Score=153.92 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=92.7
Q ss_pred HhccCCCcEEEeCcHHH-HHHHHcCC------CCCCCeeEEEEecccccc-ccC--------------CChhhHHHHHhh
Q 030396 10 DLSKFSCDILISTPLRL-RLAIRRKK------IDLSRVEYLVLDEADKLF-EVG--------------NLLKHIDPVVKA 67 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l-~~~l~~~~------~~~~~l~~lViDE~d~ll-~~~--------------~~~~~i~~i~~~ 67 (178)
+.+..+|+|+|||||+| .++++.+. +.++.++++|+||||.|+ +.+ .|...+..|+..
T Consensus 158 r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~ 237 (853)
T 2fsf_A 158 KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPH 237 (853)
T ss_dssp HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-----------------
T ss_pred HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHh
Confidence 33445799999999999 79887653 668999999999999998 432 256788888888
Q ss_pred CCCC--------------------CceEE------------------------EEeecCcH---HHHHHH--HHhcc-C-
Q 030396 68 CSNP--------------------SIVRS------------------------LFSATLPD---FVEELA--RSIMH-D- 96 (178)
Q Consensus 68 ~~~~--------------------~~q~i------------------------~~SAT~~~---~~~~~~--~~~~~-~- 96 (178)
++. .+|+. +||||.++ .+...+ ..++. +
T Consensus 238 -L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 316 (853)
T 2fsf_A 238 -LIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDV 316 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -chhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCc
Confidence 443 56654 89999864 222211 11110 0
Q ss_pred -----------------------------------cEEEEEcCCccccCCceE---------------------------
Q 030396 97 -----------------------------------AVRVIVGRKNTASESIKQ--------------------------- 114 (178)
Q Consensus 97 -----------------------------------~~~v~~~~~~~~~~~i~~--------------------------- 114 (178)
+..+.+.+...+...|.+
T Consensus 317 dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~i 396 (853)
T 2fsf_A 317 DYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSI 396 (853)
T ss_dssp ----------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHH
T ss_pred cceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHH
Confidence 112233333333333332
Q ss_pred --------------------EEEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 115 --------------------KLVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 115 --------------------~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
.++++ ....|...+.+.+.. ...+|+||||+|+..++.++..|...|+++..+||++
T Consensus 397 Y~l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~ 475 (853)
T 2fsf_A 397 YKLDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKF 475 (853)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTC
T ss_pred hCCcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCh
Confidence 12333 567899999988864 3467899999999999999999999999999999998
Q ss_pred Ccccc
Q 030396 173 SQTQV 177 (178)
Q Consensus 173 ~~~~R 177 (178)
.+++|
T Consensus 476 ~~rEa 480 (853)
T 2fsf_A 476 HANEA 480 (853)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76654
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.79 E-value=1.9e-20 Score=163.77 Aligned_cols=152 Identities=14% Similarity=0.264 Sum_probs=119.8
Q ss_pred hHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCC----------CCCceEEE
Q 030396 8 STDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACS----------NPSIVRSL 77 (178)
Q Consensus 8 q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~----------~~~~q~i~ 77 (178)
+.+.+++ ++|+|||||+|.+++.+ +++++++|+||||.++++ ...++.++..+. +...|+++
T Consensus 149 ~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~---~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l 220 (1054)
T 1gku_B 149 FMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA---SKNVDKLLHLLGFHYDLKTKSWVGEARGCL 220 (1054)
T ss_dssp HHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS---THHHHHHHHHTTEEEETTTTEEEECCSSEE
T ss_pred HHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc---cccHHHHHHHhCcchhhhhhhcccCCceEE
Confidence 4556666 99999999999998775 669999999999999884 467777777621 35689999
Q ss_pred EeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHH
Q 030396 78 FSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGE 157 (178)
Q Consensus 78 ~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~ 157 (178)
+|||+++. ..+...++.++..+.+........++.+.++ ..+|...+.++++.. ..++||||+|++.|+.++..
T Consensus 221 ~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~ 294 (1054)
T 1gku_B 221 MVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYES 294 (1054)
T ss_dssp EECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHT
T ss_pred EEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHH
Confidence 99999987 6555555555555555555666677877775 235667788888776 57899999999999999999
Q ss_pred hhhCCCceEeeecCCCc
Q 030396 158 LAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 158 L~~~g~~~~~lh~~~~~ 174 (178)
|... +++..+||+|..
T Consensus 295 L~~~-~~v~~lhg~~~~ 310 (1054)
T 1gku_B 295 LKNK-FRIGIVTATKKG 310 (1054)
T ss_dssp TTTS-SCEEECTTSSSH
T ss_pred Hhhc-cCeeEEeccHHH
Confidence 9988 999999999853
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.78 E-value=3.3e-19 Score=150.89 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=111.2
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
++++|+|+|||++..++.++...+++++++|+||+|.+.+++ +...++.++.. ++...|++++|||+++. .. +..|
T Consensus 113 ~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-r~~~~~~ll~~-l~~~~~ii~lSATl~n~-~~-~~~~ 188 (720)
T 2zj8_A 113 GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD-RGATLEVILAH-MLGKAQIIGLSATIGNP-EE-LAEW 188 (720)
T ss_dssp GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT-THHHHHHHHHH-HBTTBEEEEEECCCSCH-HH-HHHH
T ss_pred CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc-ccHHHHHHHHH-hhcCCeEEEEcCCcCCH-HH-HHHH
Confidence 368999999999999998877778999999999999998877 89999999998 55589999999999863 33 3445
Q ss_pred ccCcEEEEEcCCccccCCceEEEE-----EcCC-----hhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC--
Q 030396 94 MHDAVRVIVGRKNTASESIKQKLV-----FAGS-----EEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD-- 161 (178)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~i~~~~~-----~~~~-----~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~-- 161 (178)
+..+. +... ..+..+...+. ...+ ...+...+.+.+.. .+++||||+|++.|+.++..|.+.
T Consensus 189 l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~ 262 (720)
T 2zj8_A 189 LNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVK 262 (720)
T ss_dssp TTEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHG
T ss_pred hCCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHH
Confidence 54321 1111 11111111111 1111 23445666666553 489999999999999999999753
Q ss_pred ----------------C---------------CceEeeecCCCcccc
Q 030396 162 ----------------D---------------IRAGVIHSDLSQTQV 177 (178)
Q Consensus 162 ----------------g---------------~~~~~lh~~~~~~~R 177 (178)
+ ..+..+||+|++++|
T Consensus 263 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 263 SLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp GGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 1 248999999999887
No 30
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.78 E-value=5e-19 Score=129.43 Aligned_cols=96 Identities=25% Similarity=0.417 Sum_probs=86.3
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
++.+.+.++++|+|+|||++.+++..+..++.+++++|+||||.+.+++ +...+..+++. ++.+.|++++|||+|+++
T Consensus 118 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~-~~~~l~~i~~~-~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 118 KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG-FITDVDQIAAR-MPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT-CHHHHHHHHHT-SCTTCEEEEEESCCCGGG
T ss_pred HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC-hHHHHHHHHHh-CCcccEEEEEecCCCHHH
Confidence 3444555689999999999999999988889999999999999999998 99999999999 788899999999999999
Q ss_pred HHHHHHhccCcEEEEEcC
Q 030396 87 EELARSIMHDAVRVIVGR 104 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~ 104 (178)
.++++.++++|..+.+..
T Consensus 196 ~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 196 KPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHcCCCeEEEeec
Confidence 999999999998887654
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.78 E-value=4.8e-19 Score=149.49 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC--CCCCceEEEEeecCcHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
++++|+|+|||++..++.++...+++++++|+||+|.+.+++ +...++.++..+ ..+..|++++|||+++ ...+ .
T Consensus 113 ~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~-r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~-~ 189 (702)
T 2p6r_A 113 GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK-RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEI-A 189 (702)
T ss_dssp TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT-THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHH-H
T ss_pred cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC-cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHH-H
Confidence 378999999999999998877678999999999999998877 788888877662 2568999999999996 3343 3
Q ss_pred HhccCcEEEEEcCCccccCCceEEEE------EcCCh------hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhh
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLV------FAGSE------EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~------~~~~~------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~ 159 (178)
.|+..+. +... ..+..+...+. ..... ..+...+.+.+. ..+++||||+|++.|+.++..|.
T Consensus 190 ~~l~~~~-~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~ 263 (702)
T 2p6r_A 190 EWLDADY-YVSD---WRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLS 263 (702)
T ss_dssp HHTTCEE-EECC---CCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHhCCCc-ccCC---CCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHH
Confidence 4555432 2111 11111222111 11110 015666666665 35899999999999999999986
Q ss_pred hC------------------------------CCceEeeecCCCcccc
Q 030396 160 FD------------------------------DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 160 ~~------------------------------g~~~~~lh~~~~~~~R 177 (178)
+. ++.+..+||+|++++|
T Consensus 264 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 311 (702)
T 2p6r_A 264 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 311 (702)
T ss_dssp HHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHH
T ss_pred HHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHH
Confidence 53 2458899999999887
No 32
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=135.43 Aligned_cols=90 Identities=29% Similarity=0.306 Sum_probs=82.3
Q ss_pred cCCCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccc-cCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 13 KFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFE-VGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~-~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
+.+++|+|||||+|++++.+ +.+++++++++|+||||.+++ .+ |...+..|++. ++.+.|+++||||+++.+..++
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~-~~~~~~~i~~~-~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG-HQDQSIRIQRM-LPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTT-HHHHHHHHHTT-SCTTCEEEEEESCCCHHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccC-cHHHHHHHHHh-CCCCCEEEEEeccCCHHHHHHH
Confidence 45789999999999999966 678899999999999999998 56 99999999998 7889999999999999999999
Q ss_pred HHhccCcEEEEEcC
Q 030396 91 RSIMHDAVRVIVGR 104 (178)
Q Consensus 91 ~~~~~~~~~v~~~~ 104 (178)
..++.+|..+.+..
T Consensus 286 ~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 286 QKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHSSSCEEEEECC
T ss_pred HHHCCCCeEEEecC
Confidence 99999999988754
No 33
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.78 E-value=9.2e-19 Score=129.63 Aligned_cols=94 Identities=29% Similarity=0.425 Sum_probs=80.5
Q ss_pred hHHhccCC-CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 8 STDLSKFS-CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 8 q~~~l~~~-~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+.+.+..+ ++|+|+|||++.+++..+...+.+++++|+||||.+++++ |...+..+++. .+...|++++|||+|+.+
T Consensus 141 ~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~-~~~~l~~i~~~-~~~~~~~i~~SAT~~~~~ 218 (237)
T 3bor_A 141 EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG-FKDQIYEIFQK-LNTSIQVVLLSATMPTDV 218 (237)
T ss_dssp -------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT-CHHHHHHHHHH-SCTTCEEEEECSSCCHHH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC-cHHHHHHHHHh-CCCCCeEEEEEEecCHHH
Confidence 33344444 9999999999999999888889999999999999999998 99999999999 788999999999999999
Q ss_pred HHHHHHhccCcEEEEEc
Q 030396 87 EELARSIMHDAVRVIVG 103 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~ 103 (178)
.+++..++++|..+.++
T Consensus 219 ~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 219 LEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHHHHCSSCEEEC--
T ss_pred HHHHHHHCCCCEEEEec
Confidence 99999999999888664
No 34
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.77 E-value=3.2e-18 Score=144.73 Aligned_cols=152 Identities=21% Similarity=0.200 Sum_probs=109.7
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
+++|+|+|||++..++.++...+++++++|+||+|.+.+++ +...++.++.. ++ ..|++++|||+++. ..+. .|+
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-~~~~l~~i~~~-~~-~~~ii~lSATl~n~-~~~~-~~l 195 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE-RGPVVESVTIR-AK-RRNLLALSATISNY-KQIA-KWL 195 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT-THHHHHHHHHH-HH-TSEEEEEESCCTTH-HHHH-HHH
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc-cchHHHHHHHh-cc-cCcEEEEcCCCCCH-HHHH-HHh
Confidence 68999999999999998877678999999999999988767 88999999887 44 89999999999853 3333 344
Q ss_pred cCcEEEEEcCCccccCCceEEE-----------EEcCC--------hhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHH
Q 030396 95 HDAVRVIVGRKNTASESIKQKL-----------VFAGS--------EEGKLLALRQSFAESLNPPVLIFVQSKDRAKELY 155 (178)
Q Consensus 95 ~~~~~v~~~~~~~~~~~i~~~~-----------~~~~~--------~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~ 155 (178)
..+. +... ..+..+...+ +...+ ...+...+.+.+. ..+++||||+|+++|+.++
T Consensus 196 ~~~~-~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a 269 (715)
T 2va8_A 196 GAEP-VATN---WRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTA 269 (715)
T ss_dssp TCEE-EECC---CCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHH
T ss_pred CCCc-cCCC---CCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHH
Confidence 4322 1111 0111111111 11111 2345666666654 3589999999999999999
Q ss_pred HHhhhCC------------------------------------CceEeeecCCCcccc
Q 030396 156 GELAFDD------------------------------------IRAGVIHSDLSQTQV 177 (178)
Q Consensus 156 ~~L~~~g------------------------------------~~~~~lh~~~~~~~R 177 (178)
..|.+.. ..+..+||+|++++|
T Consensus 270 ~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 270 LKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 9997642 248999999999887
No 35
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=2.8e-18 Score=124.07 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=84.6
Q ss_pred HHhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 6 VRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 6 ~~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.++...+.++++|+|+|||++.+.+.++...+++++++|+||||.+.+.+ +...+..+++. .+.+.|++++|||+|+.
T Consensus 113 ~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~-~~~~l~~i~~~-~~~~~~~l~~SAT~~~~ 190 (206)
T 1vec_A 113 RDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILT-LPKNRQILLYSATFPLS 190 (206)
T ss_dssp HHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT-THHHHHHHHHH-SCTTCEEEEEESCCCHH
T ss_pred HHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC-cHHHHHHHHHh-CCccceEEEEEeeCCHH
Confidence 34555667789999999999999999988889999999999999999888 99999999999 78899999999999999
Q ss_pred HHHHHHHhccCcEEE
Q 030396 86 VEELARSIMHDAVRV 100 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v 100 (178)
+.++++.++++|..+
T Consensus 191 ~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 191 VQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHHHHHCSSCEEE
T ss_pred HHHHHHHHcCCCeEe
Confidence 999999999999765
No 36
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=128.00 Aligned_cols=95 Identities=28% Similarity=0.418 Sum_probs=85.3
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHc-CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~-~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
++...+.++++|+|+|||++.+.+.. +.+++.+++++|+||||.+++++ |...+..+++. ++...|++++|||+++.
T Consensus 153 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~l~~i~~~-~~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 153 SQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD-FETEVDKILKV-IPRDRKTFLFSATMTKK 230 (249)
T ss_dssp HHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT-CHHHHHHHHHS-SCSSSEEEEEESSCCHH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC-hHHHHHHHHHh-CCCCCeEEEEeccCCHH
Confidence 44555667899999999999999876 56789999999999999999998 99999999999 78899999999999999
Q ss_pred HHHHHHHhccCcEEEEEc
Q 030396 86 VEELARSIMHDAVRVIVG 103 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~ 103 (178)
+.++++.++++|..+.++
T Consensus 231 v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 231 VQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHCCCCEEEEec
Confidence 999999999999888653
No 37
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=2.3e-18 Score=124.50 Aligned_cols=95 Identities=35% Similarity=0.498 Sum_probs=85.5
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
++.+.+.++++|+|+||+++.+++..+..++.+++++|+||||.+.+++ +...+..+++. .+...|++++|||+++.+
T Consensus 112 ~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 189 (207)
T 2gxq_A 112 KQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG-FEEEVEALLSA-TPPSRQTLLFSATLPSWA 189 (207)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT-CHHHHHHHHHT-SCTTSEEEEECSSCCHHH
T ss_pred HHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc-hHHHHHHHHHh-CCccCeEEEEEEecCHHH
Confidence 3444555689999999999999999988889999999999999999988 99999999998 788999999999999999
Q ss_pred HHHHHHhccCcEEEEEc
Q 030396 87 EELARSIMHDAVRVIVG 103 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~ 103 (178)
.++.+.++.+|..+.+.
T Consensus 190 ~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 190 KRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHHHHCSSCEEEECC
T ss_pred HHHHHHHcCCCeEEEcC
Confidence 99999999999887653
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=1.4e-17 Score=133.39 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH---HHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD---FVEELA 90 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~---~~~~~~ 90 (178)
.+++|+|+||+++...+..+.+.+.+++++|+||||.+.+.. ....+...+.. .....+++++|||.+. .+..+.
T Consensus 100 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~~~~~~~~-~~~~~~~l~lTaTp~~~~~~~~~l~ 177 (494)
T 1wp9_A 100 ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY-AYVFIAREYKR-QAKNPLVIGLTASPGSTPEKIMEVI 177 (494)
T ss_dssp HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC-HHHHHHHHHHH-HCSSCCEEEEESCSCSSHHHHHHHH
T ss_pred cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC-cHHHHHHHHHh-cCCCCeEEEEecCCCCCcHHHHHHH
Confidence 468999999999999999888889999999999999998765 44445555555 4568899999999973 344444
Q ss_pred HHh
Q 030396 91 RSI 93 (178)
Q Consensus 91 ~~~ 93 (178)
..+
T Consensus 178 ~~l 180 (494)
T 1wp9_A 178 NNL 180 (494)
T ss_dssp HHT
T ss_pred Hhc
Confidence 443
No 39
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.76 E-value=2.1e-18 Score=143.47 Aligned_cols=140 Identities=19% Similarity=0.116 Sum_probs=100.0
Q ss_pred ccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCce--EEEEeecCcHHHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIV--RSLFSATLPDFVEEL 89 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q--~i~~SAT~~~~~~~~ 89 (178)
+.++++|+|+|||+| +..+.+++++++++|+||||.+ +.+ |...+..|++. .+...| ++++|||++..+.
T Consensus 294 ~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~-~~~~l~~Il~~-l~~~~~~llil~SAT~~~~i~-- 365 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DST-TILGIGTVLDQ-AETAGARLVVLATATPPGSVT-- 365 (666)
T ss_dssp ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHH-HHHHHHHHHHH-TTTTTCSEEEEEESSCTTCCC--
T ss_pred ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-Ccc-HHHHHHHHHHh-hhhcCCceEEEECCCCCcccc--
Confidence 356799999999997 5677788999999999999654 666 78889999998 666666 6777999997421
Q ss_pred HHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeee
Q 030396 90 ARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
...|....+..... ..+ .. . ..... ++....+++||||||+++|+.+++.|.+.|+++..+|
T Consensus 366 ----~~~p~i~~v~~~~~--~~i-~~---~-~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lH 427 (666)
T 3o8b_A 366 ----VPHPNIEEVALSNT--GEI-PF---Y-GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYY 427 (666)
T ss_dssp ----CCCTTEEEEECBSC--SSE-EE---T-TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEEC
T ss_pred ----cCCcceEEEeeccc--chh-HH---H-Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEec
Confidence 12221111110000 000 10 0 10000 2233578999999999999999999999999999999
Q ss_pred cCCCcccc
Q 030396 170 SDLSQTQV 177 (178)
Q Consensus 170 ~~~~~~~R 177 (178)
|+|++++|
T Consensus 428 G~l~q~er 435 (666)
T 3o8b_A 428 RGLDVSVI 435 (666)
T ss_dssp TTSCGGGS
T ss_pred CCCCHHHH
Confidence 99999876
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.75 E-value=1.7e-19 Score=152.37 Aligned_cols=164 Identities=20% Similarity=0.295 Sum_probs=116.1
Q ss_pred ccCCCcEEEeCcHHH-HHHHHcC------CCCCCCeeEEEEeccccccc-cC--------------CChhhHHHHHhhCC
Q 030396 12 SKFSCDILISTPLRL-RLAIRRK------KIDLSRVEYLVLDEADKLFE-VG--------------NLLKHIDPVVKACS 69 (178)
Q Consensus 12 l~~~~~Iii~TP~~l-~~~l~~~------~~~~~~l~~lViDE~d~ll~-~~--------------~~~~~i~~i~~~~~ 69 (178)
...+|+|++||||+| .++++.+ .+.++.+.++|+||||.|+. .+ .|...+..|+.. +
T Consensus 197 ~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~-L 275 (922)
T 1nkt_A 197 VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPL-M 275 (922)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHH-S
T ss_pred HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHh-C
Confidence 334699999999999 7888765 36688999999999999984 21 277899999999 5
Q ss_pred C---------CCceEE-----------------EEeecCcH---HHHHHHHH--hcc-Cc-------EEEEEc-------
Q 030396 70 N---------PSIVRS-----------------LFSATLPD---FVEELARS--IMH-DA-------VRVIVG------- 103 (178)
Q Consensus 70 ~---------~~~q~i-----------------~~SAT~~~---~~~~~~~~--~~~-~~-------~~v~~~------- 103 (178)
+ ..+|+. +||||.++ .+...+.. ++. +. ..+.++
T Consensus 276 ~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m 355 (922)
T 1nkt_A 276 EKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVL 355 (922)
T ss_dssp CBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBC
T ss_pred cccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCccc
Confidence 5 678988 99999875 34333222 222 21 111111
Q ss_pred ----------------------CCccccCCceE-----------------------------------------------
Q 030396 104 ----------------------RKNTASESIKQ----------------------------------------------- 114 (178)
Q Consensus 104 ----------------------~~~~~~~~i~~----------------------------------------------- 114 (178)
++..+...|.+
T Consensus 356 ~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~ 435 (922)
T 1nkt_A 356 IGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQS 435 (922)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECC
T ss_pred CCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCC
Confidence 11111111111
Q ss_pred EEEEcCChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 115 KLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 115 ~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.+++. ....|...+.+.+... ..+|+||||+|++.++.|+..|...|+++..+||++.+++|
T Consensus 436 d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa 499 (922)
T 1nkt_A 436 DLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA 499 (922)
T ss_dssp CEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH
T ss_pred cEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 12333 5667998888888642 46799999999999999999999999999999999876654
No 41
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=125.78 Aligned_cols=94 Identities=36% Similarity=0.610 Sum_probs=82.8
Q ss_pred ccCCCcEEEeCcHHHHHHHHcC--CCCCCCeeEEEEeccccccccC--CChhhHHHHHhhCCCCCceEEEEeecCcHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFEVG--NLLKHIDPVVKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~--~~~~~~l~~lViDE~d~ll~~~--~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
..++++|+|+|||++.+++..+ .+++++++++|+||||.+++++ .|.+.+..++..+.+...|++++|||+|+++.
T Consensus 146 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 146 SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE 225 (245)
T ss_dssp SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHH
Confidence 4567999999999999999876 5789999999999999999852 38999999988855678999999999999999
Q ss_pred HHHHHhccCcEEEEEcCC
Q 030396 88 ELARSIMHDAVRVIVGRK 105 (178)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~ 105 (178)
++++.++++|..+.++..
T Consensus 226 ~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 226 QWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHSSSCEEEEECC-
T ss_pred HHHHHhCCCCEEEEeCCC
Confidence 999999999999988654
No 42
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.75 E-value=6.2e-18 Score=123.83 Aligned_cols=90 Identities=28% Similarity=0.510 Sum_probs=80.6
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
+++|+|+||+++.+.+..+...+++++++|+||||.+.+++ +...+..+++. .+...|++++|||+++.+.++++.++
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-~~~~l~~i~~~-~~~~~~~i~lSAT~~~~~~~~~~~~~ 208 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG-FKEQIYQIFTL-LPPTTQVVLLSATMPNDVLEVTTKFM 208 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT-CHHHHHHHHHH-SCTTCEEEEEESSCCHHHHHHHHHHC
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh-hHHHHHHHHHh-CCccCeEEEEEeecCHHHHHHHHHHC
Confidence 48999999999999999988889999999999999999988 99999999999 78899999999999999999999999
Q ss_pred cCcEEEEEcCCc
Q 030396 95 HDAVRVIVGRKN 106 (178)
Q Consensus 95 ~~~~~v~~~~~~ 106 (178)
++|..+.+....
T Consensus 209 ~~p~~i~~~~~~ 220 (224)
T 1qde_A 209 RNPVRILVKKDE 220 (224)
T ss_dssp SSCEEEC-----
T ss_pred CCCEEEEecCCc
Confidence 999988776543
No 43
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.74 E-value=4.9e-18 Score=125.14 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=81.3
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 93 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 93 (178)
++++|+|+|||++.+++..+.+++++++++|+||||.+++++.|.+.+..+++. ++...|++++|||+++.+.+++..+
T Consensus 141 ~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~-~~~~~~~l~lSAT~~~~~~~~~~~~ 219 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS-LPASKQMLAVSATYPEFLANALTKY 219 (230)
T ss_dssp TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH-SCSSCEEEEEESCCCHHHHHHHTTT
T ss_pred cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHh-CCCCCeEEEEEeccCHHHHHHHHHH
Confidence 478999999999999999888889999999999999999886699999999999 7889999999999999999999999
Q ss_pred ccCcEEEEE
Q 030396 94 MHDAVRVIV 102 (178)
Q Consensus 94 ~~~~~~v~~ 102 (178)
+++|..+.+
T Consensus 220 ~~~p~~i~~ 228 (230)
T 2oxc_A 220 MRDPTFVRL 228 (230)
T ss_dssp CSSCEEECC
T ss_pred cCCCeEEEc
Confidence 999988754
No 44
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.74 E-value=2.1e-17 Score=135.33 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=55.3
Q ss_pred HHhccCCCcEEEeCcHHHHHHHHcCCC-CCCCeeEEEEeccccccccCCChhhH-HHHHhhC---CCCCceEEEEeecCc
Q 030396 9 TDLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEVGNLLKHI-DPVVKAC---SNPSIVRSLFSATLP 83 (178)
Q Consensus 9 ~~~l~~~~~Iii~TP~~l~~~l~~~~~-~~~~l~~lViDE~d~ll~~~~~~~~i-~~i~~~~---~~~~~q~i~~SAT~~ 83 (178)
.+.+..+++|+|+|||++.+++..+.+ .+.+++++|+||||.+.+++ ....+ ...+... ..+..|++++|||.+
T Consensus 99 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 99 VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-HHHHHHHHHHHHHHCC---CCEEEEEESCCC
T ss_pred HHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-hHHHHHHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 334456799999999999999998887 79999999999999998877 33332 2222210 135689999999995
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.74 E-value=1.5e-18 Score=146.02 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=56.0
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcCCC-CCCCeeEEEEeccccccccCCChhhHHHHHhh----CCCCCceEEEEeecCc
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKA----CSNPSIVRSLFSATLP 83 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~~~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~----~~~~~~q~i~~SAT~~ 83 (178)
+.+..+++|+|+|||+|.+.+..+.+ .+.+++++|+||||.+.....+...+...+.. ..+...|++++|||..
T Consensus 106 ~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 106 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 33445799999999999999998877 78999999999999997655233333222222 1346789999999986
No 46
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=126.69 Aligned_cols=89 Identities=27% Similarity=0.378 Sum_probs=79.7
Q ss_pred HhHHhccCCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 7 RSTDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 7 ~q~~~l~~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.+.+.+.++++|+|||||++.+++... ...+++++++|+||||.+++++ |.+.+..|++. ++...|++++|||++++
T Consensus 168 ~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~-~~~~l~~i~~~-~~~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG-FEEELKQIIKL-LPTRRQTMLFSATQTRK 245 (262)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTT-CHHHHHHHHHH-SCSSSEEEEECSSCCHH
T ss_pred HHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhh-HHHHHHHHHHh-CCCCCeEEEEEecCCHH
Confidence 445556678999999999999988764 4788999999999999999999 99999999999 88899999999999999
Q ss_pred HHHHHHHhccCc
Q 030396 86 VEELARSIMHDA 97 (178)
Q Consensus 86 ~~~~~~~~~~~~ 97 (178)
+.++++.+++++
T Consensus 246 v~~~~~~~l~~~ 257 (262)
T 3ly5_A 246 VEDLARISLKKE 257 (262)
T ss_dssp HHHHHHHHCSSC
T ss_pred HHHHHHHHcCCC
Confidence 999999998854
No 47
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.73 E-value=6.1e-17 Score=132.33 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=57.1
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcCCC-CCCCeeEEEEeccccccccCCChhhHHHHHhhCC----CCCceEEEEeecCcH
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACS----NPSIVRSLFSATLPD 84 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~~~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~----~~~~q~i~~SAT~~~ 84 (178)
+.+.++++|+|+|||++.+++..+.+ .+.+++++|+||||.+.+.+.+...+...+.... ....|++++|||.+.
T Consensus 97 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 97 QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 34445799999999999999998877 7899999999999999887633333334333311 255799999999953
No 48
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=121.45 Aligned_cols=88 Identities=30% Similarity=0.421 Sum_probs=80.8
Q ss_pred CCCcEEEeCcHHHHHHHHcC-CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~-~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
++++|+|+|||++.+.+..+ ...+.+++++|+||||.+.+++ |.+.+..+++. ++...|++++|||+++.+.++.+.
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG-FADTMNAVIEN-LPKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT-THHHHHHHHHT-SCTTSEEEEEESSCCHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC-cHHHHHHHHHh-CCCCCeEEEEEeeCCHHHHHHHHH
Confidence 47899999999999988764 5778999999999999999999 99999999999 788999999999999999999999
Q ss_pred hccCcEEEEEc
Q 030396 93 IMHDAVRVIVG 103 (178)
Q Consensus 93 ~~~~~~~v~~~ 103 (178)
++.+|..+.++
T Consensus 223 ~~~~p~~i~~~ 233 (236)
T 2pl3_A 223 SLKNPEYVWVH 233 (236)
T ss_dssp SCSSCEEEECC
T ss_pred hCCCCEEEEeC
Confidence 99999888764
No 49
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.70 E-value=7.9e-17 Score=137.70 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHhccCCCcEEEeCcHHHHHHHHcCCC-CCCCeeEEEEeccccccccCCChhhHHHHHhhC---CCCCceEEEEeecCc
Q 030396 9 TDLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC---SNPSIVRSLFSATLP 83 (178)
Q Consensus 9 ~~~l~~~~~Iii~TP~~l~~~l~~~~~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~---~~~~~q~i~~SAT~~ 83 (178)
.+.+..+++|+|+|||+|.+.+..+.+ .+.+++++|+||||.+...+.+...+....... .....|++++|||.+
T Consensus 340 ~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 340 VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 344556899999999999999998877 789999999999999987662233232333220 145689999999995
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=1.2e-16 Score=135.93 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=109.3
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccc-ccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADK-LFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~-ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
.+.+|+++|||++.+.+... ..+.+++++|+||+|. .++.......+..+... .++.|++++|||++.. . +..
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~--~~~~~iIl~SAT~~~~--~-l~~ 257 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKR--RPDLKIIIMSATLDAE--K-FQR 257 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH--CTTCEEEEEESCSCCH--H-HHH
T ss_pred CCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHh--CCCceEEEEeccccHH--H-HHH
Confidence 56899999999999877654 4588999999999996 55543234555566654 2578999999999743 3 345
Q ss_pred hccCcEEEEEcCCccccCCceEEEEEcCChh---hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh---------
Q 030396 93 IMHDAVRVIVGRKNTASESIKQKLVFAGSEE---GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF--------- 160 (178)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~--------- 160 (178)
++.++..+.+.... ..+.+++....... .....+.++......+++||||+++++++.++..|.+
T Consensus 258 ~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~ 334 (773)
T 2xau_A 258 YFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREE 334 (773)
T ss_dssp HTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccc
Confidence 66655455543322 23555553332222 1233444444455678999999999999999999975
Q ss_pred --CCCceEeeecCCCcccc
Q 030396 161 --DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 161 --~g~~~~~lh~~~~~~~R 177 (178)
.|+.+..+||+|++++|
T Consensus 335 ~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 335 GCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp CCCCEEEEEECTTCCHHHH
T ss_pred cCCCeEEEEeCCCCCHHHH
Confidence 68899999999998876
No 51
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=5.7e-17 Score=118.42 Aligned_cols=86 Identities=24% Similarity=0.447 Sum_probs=78.8
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecccccccc-CCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV-GNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 92 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~-~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 92 (178)
.+++|+|+||+++.+++..+...+.+++++|+||||.++++ + +...+..+++. .+.+.|++++|||+++.+.++++.
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~-~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD-MRRDVQEIFRM-TPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHH-HHHHHHHHHHT-SCSSSEEEEEESCCCTTTHHHHHT
T ss_pred CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccC-cHHHHHHHHHh-CCCcCeEEEEEeecCHHHHHHHHH
Confidence 46899999999999999998888999999999999999874 6 88999999998 778999999999999999999999
Q ss_pred hccCcEEEE
Q 030396 93 IMHDAVRVI 101 (178)
Q Consensus 93 ~~~~~~~v~ 101 (178)
++.+|..+.
T Consensus 211 ~~~~p~~i~ 219 (220)
T 1t6n_A 211 FMQDPMEIF 219 (220)
T ss_dssp TCSSCEEEE
T ss_pred HcCCCeEEe
Confidence 999998764
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.67 E-value=2.7e-16 Score=136.38 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=55.7
Q ss_pred HhccCCCcEEEeCcHHHHHHHHcCCC-CCCCeeEEEEeccccccccCCChhhHHHHHhhC---CCCCceEEEEeecCc
Q 030396 10 DLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC---SNPSIVRSLFSATLP 83 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l~~~l~~~~~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~---~~~~~q~i~~SAT~~ 83 (178)
+.+..+++|+|+|||+|.+.+..+.+ .+.+++++|+||||.+...+.+...+..+.... .....|++++|||.+
T Consensus 341 ~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 341 EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 34445789999999999999998877 789999999999999987662333333333220 145689999999995
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.66 E-value=6.7e-16 Score=136.09 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=105.4
Q ss_pred hHHhccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 8 STDLSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 8 q~~~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+.+.+.. .++|+||||+.+ .+.+.+++++++|+||+|.+ + .....+++. ++.+.+++++|||.++..
T Consensus 698 ~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIiDEaH~~---g---~~~~~~l~~-l~~~~~vl~lSATp~p~~ 765 (1151)
T 2eyq_A 698 ILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRF---G---VRHKERIKA-MRANVDILTLTATPIPRT 765 (1151)
T ss_dssp HHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGS---C---HHHHHHHHH-HHTTSEEEEEESSCCCHH
T ss_pred HHHHHhcCCCCEEEECHHHH-----hCCccccccceEEEechHhc---C---hHHHHHHHH-hcCCCCEEEEcCCCChhh
Confidence 3344444 599999999765 24567899999999999995 2 234455565 566889999999988776
Q ss_pred HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC--CCc
Q 030396 87 EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD--DIR 164 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~--g~~ 164 (178)
.......+.++..+... ......+..++... +.......+...+ ...++++||||++++++.+++.|.+. |+.
T Consensus 766 l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~-~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~ 840 (1151)
T 2eyq_A 766 LNMAMSGMRDLSIIATP--PARRLAVKTFVREY-DSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEAR 840 (1151)
T ss_dssp HHHHHTTTSEEEECCCC--CCBCBCEEEEEEEC-CHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSC
T ss_pred HHHHHhcCCCceEEecC--CCCccccEEEEecC-CHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 66655555555444322 22223444444332 3222222222222 23578999999999999999999887 889
Q ss_pred eEeeecCCCcccc
Q 030396 165 AGVIHSDLSQTQV 177 (178)
Q Consensus 165 ~~~lh~~~~~~~R 177 (178)
+..+||+|++++|
T Consensus 841 v~~lhg~~~~~eR 853 (1151)
T 2eyq_A 841 IAIGHGQMREREL 853 (1151)
T ss_dssp EEECCSSCCHHHH
T ss_pred EEEEeCCCCHHHH
Confidence 9999999999876
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.66 E-value=1e-15 Score=138.82 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=103.3
Q ss_pred CCCcEEEeCcHHHHHHHHcCC--CCCCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRLAIRRKK--IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~--~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i~~SAT~~~~ 85 (178)
++++|+|+|||++..++++.. -.+++++++|+||+|.+.+. .++.++.++..+ .+...|++++|||+++.
T Consensus 1019 ~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~--rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~ 1096 (1724)
T 4f92_B 1019 GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE--NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA 1096 (1724)
T ss_dssp HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST--THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH
T ss_pred CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC--CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH
Confidence 468999999999988887533 24789999999999988653 466665554431 45789999999999863
Q ss_pred HHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChh--hHH----HHHHHHHH-hcCCCCEEEEeCCchHHHHHHHHh
Q 030396 86 VEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEE--GKL----LALRQSFA-ESLNPPVLIFVQSKDRAKELYGEL 158 (178)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~--~k~----~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L 158 (178)
.++.+....++..+........+..+..++....... .+. ..+...+. ....+++||||+|++.|+.++..|
T Consensus 1097 -~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L 1175 (1724)
T 4f92_B 1097 -KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDI 1175 (1724)
T ss_dssp -HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHH
T ss_pred -HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHH
Confidence 4444433333322222223333434444443332221 111 11222233 345679999999999999998776
Q ss_pred hhC----------------------------------CCceEeeecCCCcccc
Q 030396 159 AFD----------------------------------DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 159 ~~~----------------------------------g~~~~~lh~~~~~~~R 177 (178)
... ...++.+||||++++|
T Consensus 1176 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R 1228 (1724)
T 4f92_B 1176 LTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMER 1228 (1724)
T ss_dssp HHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHH
T ss_pred HHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHH
Confidence 321 2358899999999887
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.65 E-value=8.1e-17 Score=135.58 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=53.3
Q ss_pred hccCCCcEEEeCcHHHHHHH------HcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhC------------CCCC
Q 030396 11 LSKFSCDILISTPLRLRLAI------RRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------------SNPS 72 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l------~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------------~~~~ 72 (178)
.+.++++|+|+||++|.+.+ ..+.+.+.+++++|+||||.+...+.+...+...+... ..+.
T Consensus 102 ~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 181 (699)
T 4gl2_A 102 EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPL 181 (699)
T ss_dssp HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCC
T ss_pred hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCC
Confidence 34467999999999999988 45567889999999999999966553444444333320 1156
Q ss_pred ceEEEEeecCcH
Q 030396 73 IVRSLFSATLPD 84 (178)
Q Consensus 73 ~q~i~~SAT~~~ 84 (178)
.|++++|||.+.
T Consensus 182 ~~il~lTATp~~ 193 (699)
T 4gl2_A 182 PQILGLTASPGV 193 (699)
T ss_dssp CEEEEECSCCCC
T ss_pred CEEEEecccccc
Confidence 799999999986
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.64 E-value=7.8e-16 Score=139.56 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=104.1
Q ss_pred CCCcEEEeCcHHHHHHHHcCCC--CCCCeeEEEEeccccccccCCChhhHHHHHhhC------CCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKI--DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKAC------SNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~--~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~------~~~~~q~i~~SAT~~~~ 85 (178)
.+++|+|+|||++..+++++.. .+++++++|+||+|.+-+ . .+..++.++..+ .+...|++++|||+|+.
T Consensus 180 ~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~-RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~ 257 (1724)
T 4f92_B 180 SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-D-RGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY 257 (1724)
T ss_dssp GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-T-THHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH
T ss_pred CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-c-cHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH
Confidence 4689999999998666655432 378999999999997754 4 566666655431 45688999999999863
Q ss_pred HHHHHHHhcc-Cc-EEEEEcCCccccCCceEEEEEcCChh--hHHHHH----HHHHH-hcCCCCEEEEeCCchHHHHHHH
Q 030396 86 VEELARSIMH-DA-VRVIVGRKNTASESIKQKLVFAGSEE--GKLLAL----RQSFA-ESLNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 86 ~~~~~~~~~~-~~-~~v~~~~~~~~~~~i~~~~~~~~~~~--~k~~~l----~~ll~-~~~~~~~lIF~~t~~~~~~l~~ 156 (178)
.+++ .|++ ++ ..+........|-.+.+.++...... .+...+ .+.+. ....+++||||+|++.|+.+|.
T Consensus 258 -~dvA-~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~ 335 (1724)
T 4f92_B 258 -EDVA-TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTAR 335 (1724)
T ss_dssp -HHHH-HHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHH
T ss_pred -HHHH-HHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHH
Confidence 3443 4544 22 11222223334445666665544322 222222 22222 2346789999999999999998
Q ss_pred HhhhC-------------------------------------CCceEeeecCCCcccc
Q 030396 157 ELAFD-------------------------------------DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 157 ~L~~~-------------------------------------g~~~~~lh~~~~~~~R 177 (178)
.|.+. ..-++..||||++++|
T Consensus 336 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 336 AIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp HHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 88531 1347899999999987
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.58 E-value=1.5e-15 Score=122.15 Aligned_cols=138 Identities=10% Similarity=0.014 Sum_probs=94.1
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
+..|.++|||.+...+... ..+++++++|+||||.+ +.+ +......+......++.|++++|||+++.+.. .+.
T Consensus 87 ~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~ 160 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC-SVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQ 160 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHH-HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCC
T ss_pred CceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-Ccc-hHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhc
Confidence 4579999999998877644 46789999999999987 433 33334334333244689999999999875433 233
Q ss_pred cCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 95 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 95 ~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.++..+..... .+.. .+ ..+.+.+... .+++||||+|+++|+.+++.|.+.|+++..+||++.+
T Consensus 161 ~~~~~~~~~~~--~p~~---~~----------~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 224 (451)
T 2jlq_A 161 SNSPIEDIERE--IPER---SW----------NTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFD 224 (451)
T ss_dssp CSSCEEEEECC--CCSS---CC----------SSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHH
T ss_pred CCCceEecCcc--CCch---hh----------HHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHH
Confidence 44444443311 1110 01 0112233333 5799999999999999999999999999999998764
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.55 E-value=1.5e-14 Score=122.86 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=91.4
Q ss_pred hHHhccC-CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHH
Q 030396 8 STDLSKF-SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFV 86 (178)
Q Consensus 8 q~~~l~~-~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~ 86 (178)
+.+.+.. .++|+||||+.+.+ ...+.+++++|+||+|.+.... . ..+.. .....|++++|||.++..
T Consensus 463 ~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q--r----~~l~~-~~~~~~vL~mSATp~p~t 530 (780)
T 1gm5_A 463 IKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ--R----EALMN-KGKMVDTLVMSATPIPRS 530 (780)
T ss_dssp HHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----------CCCCS-SSSCCCEEEEESSCCCHH
T ss_pred HHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH--H----HHHHH-hCCCCCEEEEeCCCCHHH
Confidence 3444444 59999999997744 4568899999999999973322 1 12222 335789999999987653
Q ss_pred HHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCc--------hHHHHHHH
Q 030396 87 EELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSK--------DRAKELYG 156 (178)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~ 156 (178)
... .++.+.....+.........+...++ ... +...+.+.+.. ....+++|||++. +.++.+++
T Consensus 531 l~~--~~~g~~~~s~i~~~p~~r~~i~~~~~---~~~-~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~ 604 (780)
T 1gm5_A 531 MAL--AFYGDLDVTVIDEMPPGRKEVQTMLV---PMD-RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYE 604 (780)
T ss_dssp HHH--HHTCCSSCEEECCCCSSCCCCEECCC---CSS-THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHH
T ss_pred HHH--HHhCCcceeeeeccCCCCcceEEEEe---ccc-hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHH
Confidence 332 23333221222211112222333221 222 22333344432 2367899999966 45888999
Q ss_pred Hhhh---CCCceEeeecCCCcccc
Q 030396 157 ELAF---DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 157 ~L~~---~g~~~~~lh~~~~~~~R 177 (178)
.|.+ .|+.+..+||+|++++|
T Consensus 605 ~L~~~~~~~~~v~~lHG~m~~~eR 628 (780)
T 1gm5_A 605 YLSKEVFPEFKLGLMHGRLSQEEK 628 (780)
T ss_dssp SGGGSCC---CBCCCCSSSCCSCS
T ss_pred HHHhhhcCCCcEEEEeCCCCHHHH
Confidence 9988 58899999999999887
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.54 E-value=1.7e-15 Score=123.29 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=100.6
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH-
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR- 91 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~- 91 (178)
..+++|+||||+++. ..+...+.+++++|+||+|.+.. +.+..+++. +....+++++|||.+........
T Consensus 202 ~~~~~I~i~T~~~l~---~~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~-~~~~~~~l~lSATp~~~~~~~~~~ 272 (510)
T 2oca_A 202 KNDAPVVVGTWQTVV---KQPKEWFSQFGMMMNDECHLATG-----KSISSIISG-LNNCMFKFGLSGSLRDGKANIMQY 272 (510)
T ss_dssp CTTCSEEEEEHHHHT---TSCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGG-CTTCCEEEEEESCGGGCSSCHHHH
T ss_pred ccCCcEEEEeHHHHh---hchhhhhhcCCEEEEECCcCCCc-----ccHHHHHHh-cccCcEEEEEEeCCCCCcccHHHh
Confidence 467899999999654 33445678899999999999854 457888888 67788999999999765322111
Q ss_pred HhccCcEEEEEcCCc------cccCCceEEEEEcC----------C----------hhhHHHHHHHHHHhc---CCCCEE
Q 030396 92 SIMHDAVRVIVGRKN------TASESIKQKLVFAG----------S----------EEGKLLALRQSFAES---LNPPVL 142 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~------~~~~~i~~~~~~~~----------~----------~~~k~~~l~~ll~~~---~~~~~l 142 (178)
..+.++......... ..+..+....+... . ...+...+.+++... ..++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i 352 (510)
T 2oca_A 273 VGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFV 352 (510)
T ss_dssp HHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEE
Confidence 112233332222211 11111111111111 1 113445566666543 355667
Q ss_pred EEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 143 IFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 143 IF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
|||+ .+.++.+++.|.+.|.++..+||+|++++|
T Consensus 353 vf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r 386 (510)
T 2oca_A 353 MFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETR 386 (510)
T ss_dssp EESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHH
T ss_pred EEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHH
Confidence 7776 899999999999999999999999998876
No 60
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.52 E-value=2.9e-16 Score=126.05 Aligned_cols=132 Identities=15% Similarity=0.086 Sum_probs=84.4
Q ss_pred EEeCcHHHHHHHHcCC--------CCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 19 LISTPLRLRLAIRRKK--------IDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 19 ii~TP~~l~~~l~~~~--------~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
.++||+++.+++..+. ..+++++++|+||+|.+ +.+ +...+..+.+...+.+.|++++|||+++.+..+.
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~-~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA-SIAARGWAAHRARANESATILMTATPPGTSDEFP 148 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH-HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc-hHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh
Confidence 4889988765443322 34789999999999999 333 4444444444422368999999999987644322
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
.. ..|.... ...+... .+.. +...+.+. .++++|||+|++.|+.+++.|.+.|+++..+||
T Consensus 149 ~~--~~~~~~~--------------~~~~~~~-~~~~-~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg 209 (440)
T 1yks_A 149 HS--NGEIEDV--------------QTDIPSE-PWNT-GHDWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 209 (440)
T ss_dssp CC--SSCEEEE--------------ECCCCSS-CCSS-SCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS
T ss_pred hc--CCCeeEe--------------eeccChH-HHHH-HHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 11 1111110 0011111 1111 12223333 579999999999999999999999999999999
Q ss_pred C
Q 030396 171 D 171 (178)
Q Consensus 171 ~ 171 (178)
+
T Consensus 210 ~ 210 (440)
T 1yks_A 210 K 210 (440)
T ss_dssp S
T ss_pred h
Confidence 4
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.52 E-value=1.1e-14 Score=120.55 Aligned_cols=159 Identities=11% Similarity=0.030 Sum_probs=85.7
Q ss_pred ccCCCcEEEeCcHHHHHHHHc----CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHH
Q 030396 12 SKFSCDILISTPLRLRLAIRR----KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVE 87 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~----~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~ 87 (178)
...+++|+|+||+++...... +.+....++++|+||||.+...+ ...+..+++. ++ ..+++++|||......
T Consensus 271 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~--~~~~~~il~~-~~-~~~~l~lTATP~~~~~ 346 (590)
T 3h1t_A 271 VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD--NSNWREILEY-FE-PAFQIGMTATPLREDN 346 (590)
T ss_dssp CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------CHHHHHH-ST-TSEEEEEESSCSCTTT
T ss_pred CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc--hHHHHHHHHh-CC-cceEEEeccccccccc
Confidence 346789999999999887652 33456789999999999997653 4567778887 43 5789999999764322
Q ss_pred HHHHHhccCc------------------EEEEEcCCccc-------------cCCceEEEEEcCCh------hhHH----
Q 030396 88 ELARSIMHDA------------------VRVIVGRKNTA-------------SESIKQKLVFAGSE------EGKL---- 126 (178)
Q Consensus 88 ~~~~~~~~~~------------------~~v~~~~~~~~-------------~~~i~~~~~~~~~~------~~k~---- 126 (178)
.....+++.+ ..+.+...... ...+....+..... ..+.
T Consensus 347 ~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~ 426 (590)
T 3h1t_A 347 RDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFA 426 (590)
T ss_dssp HHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHH
T ss_pred hhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHH
Confidence 2222333322 11111110000 00000000001000 0111
Q ss_pred HHHHHHHHh-cCCCCEEEEeCCchHHHHHHHHhhhCCC--------ceEeeecCCCc
Q 030396 127 LALRQSFAE-SLNPPVLIFVQSKDRAKELYGELAFDDI--------RAGVIHSDLSQ 174 (178)
Q Consensus 127 ~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~g~--------~~~~lh~~~~~ 174 (178)
..+.+.++. ...+++||||+++++|+.++..|.+.+. .+..+||++++
T Consensus 427 ~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 427 KHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp HHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred HHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 223333443 3357899999999999999999977654 37889999875
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.50 E-value=7.1e-15 Score=122.34 Aligned_cols=132 Identities=10% Similarity=0.049 Sum_probs=89.9
Q ss_pred EEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCc
Q 030396 18 ILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDA 97 (178)
Q Consensus 18 Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~ 97 (178)
+.+.|.+.+...+... ..+++++++|+||||.+ +.+ +...+..+.+.+...+.|++++|||++..+..+.. .++
T Consensus 257 i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~-~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~ 330 (618)
T 2whx_A 257 VDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC-SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNS 330 (618)
T ss_dssp EEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHH-HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSS
T ss_pred EEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Ccc-HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCC
Confidence 4445555555444333 35789999999999998 556 78888888887323689999999999976443221 234
Q ss_pred EEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 98 VRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 98 ~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
..+.+.... +.. +...+...+.+. .+++||||+|++.|+.+++.|.+.|+++..+||+
T Consensus 331 ~~~~v~~~~-------------~~~--~~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 388 (618)
T 2whx_A 331 PIEDIEREI-------------PER--SWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 388 (618)
T ss_dssp CEEEEECCC-------------CSS--CCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred ceeeecccC-------------CHH--HHHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH
Confidence 333332211 000 011122233333 6799999999999999999999999999999995
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.47 E-value=1.2e-13 Score=115.88 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=87.1
Q ss_pred eCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHHH----HHhh-----------------CCCCCceEEEE
Q 030396 21 STPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHIDP----VVKA-----------------CSNPSIVRSLF 78 (178)
Q Consensus 21 ~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~~----i~~~-----------------~~~~~~q~i~~ 78 (178)
+|||+|++++..+. ++|+||+|.+++.. .+...+.. .... +.+...|++++
T Consensus 320 ~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 89999999986543 89999999986321 01111110 0000 01236899999
Q ss_pred eecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHH
Q 030396 79 SATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 79 SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~ 156 (178)
|||.++..... ..........+.....+. +.+.....+...+...+.. ....++||||+|++.|+.+++
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99998654222 112122211111111111 1222333444555444443 245799999999999999999
Q ss_pred HhhhCCCceEeeecCCCcccc
Q 030396 157 ELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 157 ~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|.+.|+++..+||++++.+|
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R 484 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLER 484 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHH
T ss_pred HHHhcCCCeEEEeCCCCHHHH
Confidence 999999999999999998877
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.47 E-value=1.5e-13 Score=110.02 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=86.6
Q ss_pred CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhcc
Q 030396 16 CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMH 95 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 95 (178)
.-+.+.|.|.+...+.. ...+++++++|+||+|.+ ..+ +......+.....+.+.|++++|||.++.+..+... .
T Consensus 71 ~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~-~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~ 145 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPA-SVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS--N 145 (431)
T ss_dssp CSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHH-HHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--S
T ss_pred ceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-Ccc-HHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--C
Confidence 44566677777655554 456889999999999998 433 334444444432246899999999999743221100 0
Q ss_pred CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 96 DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 96 ~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
.|. ..... ..+. .+...+.+.+... .++++|||+|+++|+.+++.|.+.|+++..+||++
T Consensus 146 ~~i-~~~~~-------------~~~~--~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 205 (431)
T 2v6i_A 146 SPI-IDEET-------------RIPD--KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT 205 (431)
T ss_dssp SCC-EEEEC-------------CCCS--SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT
T ss_pred Cce-eeccc-------------cCCH--HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 111 11100 0111 1112223444444 57899999999999999999999999999999984
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.44 E-value=4.1e-14 Score=114.16 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=97.9
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH---------
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD--------- 84 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~--------- 84 (178)
..++|+|+||+++...+..- ..+++++|+||+|.+.+.+ +. .+.+. . ...+++++|||.+.
T Consensus 170 ~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~-~~----~~~~~-~-~~~~~l~lSATp~~~~~~~~~l~ 239 (472)
T 2fwr_A 170 ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAES-YV----QIAQM-S-IAPFRLGLTATFEREDGRHEILK 239 (472)
T ss_dssp CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTT-TH----HHHHT-C-CCSEEEEEESCCCCTTSGGGSHH
T ss_pred CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChH-HH----HHHHh-c-CCCeEEEEecCccCCCCHHHHHH
Confidence 35789999999988776521 1457899999999998777 54 35565 3 46788999999972
Q ss_pred ----------HHHHHHHHhccCcEEEEE--cCCcc------------------------ccCCceEEEE-----------
Q 030396 85 ----------FVEELARSIMHDAVRVIV--GRKNT------------------------ASESIKQKLV----------- 117 (178)
Q Consensus 85 ----------~~~~~~~~~~~~~~~v~~--~~~~~------------------------~~~~i~~~~~----------- 117 (178)
...++...++.++....+ ..... ...++.+.+.
T Consensus 240 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (472)
T 2fwr_A 240 EVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEA 319 (472)
T ss_dssp HHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTT
T ss_pred HHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHH
Confidence 233333333443322211 10000 0000000000
Q ss_pred ---------EcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 118 ---------FAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 118 ---------~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.......|...+.++++.....++||||++.+.++.+++.|. +..+||+++..+|
T Consensus 320 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R 383 (472)
T 2fwr_A 320 LRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREER 383 (472)
T ss_dssp THHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHH
Confidence 001234578889999998878999999999999999999984 6689999998776
No 66
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=101.88 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc-cccCCCh-hhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-FEVGNLL-KHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l-l~~~~~~-~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
.+++|+|||||++.+++.. .+++++++|+||||.+ ++.+ +. ..++.+... . ++.|++++|||++.+. +.+
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~-~~~~~l~~i~~~-~-~~~~~il~SAT~~~~~--~~~ 225 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTD-FLLVVLRDVVQA-Y-PEVRIVLMSATIDTSM--FCE 225 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHH-HHHHHHHHHHHH-C-TTSEEEEEECSSCCHH--HHH
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchH-HHHHHHHHHHhh-C-CCCeEEEEecCCCHHH--HHH
Confidence 5688999999999999976 4889999999999996 6666 55 567777776 3 5799999999999775 444
Q ss_pred HhccCc
Q 030396 92 SIMHDA 97 (178)
Q Consensus 92 ~~~~~~ 97 (178)
.+.+.|
T Consensus 226 ~~~~~p 231 (235)
T 3llm_A 226 YFFNCP 231 (235)
T ss_dssp HTTSCC
T ss_pred HcCCCC
Confidence 444444
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.42 E-value=4.5e-13 Score=112.40 Aligned_cols=141 Identities=21% Similarity=0.118 Sum_probs=86.5
Q ss_pred eCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC-CChhhHH----HHHhh-----------------CCCCCceEEEE
Q 030396 21 STPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG-NLLKHID----PVVKA-----------------CSNPSIVRSLF 78 (178)
Q Consensus 21 ~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~-~~~~~i~----~i~~~-----------------~~~~~~q~i~~ 78 (178)
+||++|++++..+ .++|+||+|.+++.. .+..... ..... +.+...|++++
T Consensus 314 ~tp~~LlDyl~~~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 386 (664)
T 1c4o_A 314 EPPYTLLDYFPED-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFV 386 (664)
T ss_dssp SCCCCGGGGSCTT-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEE
T ss_pred CCchHHHHHHhhc-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEE
Confidence 8999999988543 289999999986321 0111111 00000 01135799999
Q ss_pred eecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHH
Q 030396 79 SATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 79 SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~ 156 (178)
|||.++..... .. ..+....... ++....+.+.+...+...+...+.. ....++||||+|++.|+.+++
T Consensus 387 SAT~~~~~~~~----~~--~~~~~~~r~~---~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 457 (664)
T 1c4o_A 387 SATPGPFELAH----SG--RVVEQIIRPT---GLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTS 457 (664)
T ss_dssp ESSCCHHHHHH----CS--EEEEECSCTT---CCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCCHHHHHh----hh--CeeeeeeccC---CCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 99998653221 11 1122211111 1111112222333455555554543 246799999999999999999
Q ss_pred HhhhCCCceEeeecCCCcccc
Q 030396 157 ELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 157 ~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|.+.|+++..+||+|++.+|
T Consensus 458 ~L~~~gi~~~~lh~~~~~~~R 478 (664)
T 1c4o_A 458 FLVEHGIRARYLHHELDAFKR 478 (664)
T ss_dssp HHHHTTCCEEEECTTCCHHHH
T ss_pred HHHhcCCCceeecCCCCHHHH
Confidence 999999999999999998877
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.42 E-value=7.4e-14 Score=117.04 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=98.0
Q ss_pred CCCcEEEeCcHHHHHHHHcC--CC-CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 14 FSCDILISTPLRLRLAIRRK--KI-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~--~~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
++.+++++|||++.+++... .+ ....++++|+||+|.+++.+ +...+..++..+.....|++++|||.+ .+..+.
T Consensus 211 G~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~-~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~ 288 (677)
T 3rc3_A 211 GEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA-RGWAWTRALLGLCAEEVHLCGEPAAID-LVMELM 288 (677)
T ss_dssp SSCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTT-THHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHH
T ss_pred CCeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCcc-chHHHHHHHHccCccceEEEeccchHH-HHHHHH
Confidence 34456667777666655332 12 24678999999999998888 999999999983337889999999953 344444
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
... ..+..+.... ...+ . .+ .... . ..+... ....+|||+|+++++.++..|.+.|+.+..+||
T Consensus 289 ~~~-~~~~~v~~~~-r~~~--l--~~--~~~~---l----~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 289 YTT-GEEVEVRDYK-RLTP--I--SV--LDHA---L----ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp HHH-TCCEEEEECC-CSSC--E--EE--CSSC---C----CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred Hhc-CCceEEEEee-ecch--H--HH--HHHH---H----HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 443 3444442221 1111 0 01 0000 0 111222 355699999999999999999999999999999
Q ss_pred CCCcccc
Q 030396 171 DLSQTQV 177 (178)
Q Consensus 171 ~~~~~~R 177 (178)
+|++++|
T Consensus 353 ~L~~~~R 359 (677)
T 3rc3_A 353 SLPPGTK 359 (677)
T ss_dssp TSCHHHH
T ss_pred cCCHHHH
Confidence 9999876
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.41 E-value=1.4e-14 Score=121.50 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=81.1
Q ss_pred EeCcHHHHHHHHcC--------CCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHH
Q 030396 20 ISTPLRLRLAIRRK--------KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 91 (178)
Q Consensus 20 i~TP~~l~~~l~~~--------~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~ 91 (178)
++||+++.+++..+ ...+++++++|+||+|.+ +.+ +......+.+.+.+...|++++|||+++.+..+..
T Consensus 305 v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~-~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~ 382 (673)
T 2wv9_A 305 EHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPA-SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD 382 (673)
T ss_dssp CCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHH-HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred cCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-Ccc-HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc
Confidence 67777665433222 236889999999999999 222 23333344443123679999999999976433211
Q ss_pred HhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 92 SIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
. ..|.. .+.. .... ..... +...+.+ ..+++||||+|+++|+.+++.|.+.|+++..+||+
T Consensus 383 ~--~~~i~-~v~~-------------~~~~-~~~~~-~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~ 443 (673)
T 2wv9_A 383 T--NSPVH-DVSS-------------EIPD-RAWSS-GFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK 443 (673)
T ss_dssp C--SSCEE-EEEC-------------CCCS-SCCSS-CCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS
T ss_pred c--CCceE-EEee-------------ecCH-HHHHH-HHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH
Confidence 0 11111 1110 0111 11111 1222333 36899999999999999999999999999999994
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.35 E-value=6.9e-13 Score=106.93 Aligned_cols=129 Identities=13% Similarity=0.071 Sum_probs=82.2
Q ss_pred CcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc-----cccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHH
Q 030396 16 CDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-----FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELA 90 (178)
Q Consensus 16 ~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l-----l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~ 90 (178)
-.+.+.|.+.+...+... ..+++++++|+||||.+ +..+ +... +. .....|++++|||++..+..+.
T Consensus 90 ~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~-~~~~---~~---~~~~~~~il~SAT~~~~~~~~~ 161 (459)
T 2z83_A 90 EIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARG-YIAT---KV---ELGEAAAIFMTATPPGTTDPFP 161 (459)
T ss_dssp CSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHH-HHHH---HH---HTTSCEEEEECSSCTTCCCSSC
T ss_pred cEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHH-HHHH---Hh---ccCCccEEEEEcCCCcchhhhc
Confidence 346667777766555443 45789999999999984 3333 2222 11 2368999999999997643321
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
.. ..|....... .+ . .+...+.+++... .+++||||+|++.|+.+++.|...|+++..+||
T Consensus 162 ~~--~~pi~~~~~~---~~-----------~--~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~ 222 (459)
T 2z83_A 162 DS--NAPIHDLQDE---IP-----------D--RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNR 222 (459)
T ss_dssp CC--SSCEEEEECC---CC-----------S--SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEEST
T ss_pred cC--CCCeEEeccc---CC-----------c--chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCH
Confidence 11 2333221110 00 0 0001112233333 689999999999999999999999999999999
Q ss_pred C
Q 030396 171 D 171 (178)
Q Consensus 171 ~ 171 (178)
+
T Consensus 223 ~ 223 (459)
T 2z83_A 223 K 223 (459)
T ss_dssp T
T ss_pred H
Confidence 6
No 71
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=90.86 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=60.1
Q ss_pred HHhccCcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec
Q 030396 91 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
..++.+|..+.+........++.|.++.+ +...|...|.+++... .+++||||++++.++.+++.|...|+++..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYV-KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEEC-CGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEc-ChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 46788999999888888888999999777 5567999999999876 568999999999999999999999999999999
Q ss_pred CCCcccc
Q 030396 171 DLSQTQV 177 (178)
Q Consensus 171 ~~~~~~R 177 (178)
+|++.+|
T Consensus 87 ~~~~~~R 93 (191)
T 2p6n_A 87 GKDQEER 93 (191)
T ss_dssp TSCHHHH
T ss_pred CCCHHHH
Confidence 9999887
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.30 E-value=2.3e-11 Score=98.68 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhC-CCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFD-DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~-g~~~~~lh~~~~~~~R 177 (178)
.|...+.+++... ...++||||++...++.++..|... |+++..+||++++.+|
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R 381 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKER 381 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHH
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHH
Confidence 4556666666643 5679999999999999999999885 9999999999998876
No 73
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.27 E-value=5e-12 Score=110.08 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh-CCCceEeeecCCCcccc
Q 030396 122 EEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF-DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 122 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~-~g~~~~~lh~~~~~~~R 177 (178)
...|...+.++++.....++||||++++.++.++..|.+ .|+++..+||+|++.+|
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 446899999999988889999999999999999999985 69999999999999887
No 74
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=86.59 Aligned_cols=71 Identities=23% Similarity=0.266 Sum_probs=65.6
Q ss_pred cccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 107 TASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 107 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
..+.++.|+++.+.....|...|.++++....+++||||++++.|+.++..|...|+.+..+||+|++.+|
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQR 73 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 45678999999888777799999999998888899999999999999999999999999999999999887
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.20 E-value=5.4e-11 Score=82.90 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=63.0
Q ss_pred ccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 106 NTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+..+.++.|+++.+ +...|...|.++++....+++||||+|++.++.++..|...|+++..+||+|++.+|
T Consensus 4 ~~~~~~i~~~~~~~-~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 4 GLTTRNIEHAVIQV-REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDR 74 (163)
T ss_dssp --CCCCEEEEEEEC-CGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred ccCcccceEEEEEC-ChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 44567799988776 567799999999998888899999999999999999999999999999999999887
No 76
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.18 E-value=7.1e-11 Score=83.07 Aligned_cols=68 Identities=24% Similarity=0.167 Sum_probs=61.0
Q ss_pred cCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 109 SESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 109 ~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+.++.|+++.+ +...|...|.++++....+++||||++++.|+.++..|...|+++..+||+|++.+|
T Consensus 3 ~~~i~q~~~~~-~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 3 LHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70 (172)
T ss_dssp --CCEEEEEEC-CGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred cCCeEEEEEEC-ChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHH
Confidence 56788988777 556799999999998888999999999999999999999999999999999999887
No 77
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.18 E-value=7.1e-11 Score=82.41 Aligned_cols=68 Identities=29% Similarity=0.323 Sum_probs=61.3
Q ss_pred CCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 110 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 110 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.++.|+++.+.....|...|.++++....+++||||+|++.|+.++..|...|+.+..+||+|++.+|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 69 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQER 69 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 46889998887666699999999998888999999999999999999999999999999999999877
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.14 E-value=2.2e-10 Score=81.52 Aligned_cols=72 Identities=29% Similarity=0.346 Sum_probs=55.2
Q ss_pred CccccCCceEEEEEcCChhhHHHHHHHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 105 KNTASESIKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
....+.++.|.++.+ +...|...|.++++.. ...++||||+|++.|+.++..|...|+++..+||+|++.+|
T Consensus 13 ~~~~~~~i~q~~~~v-~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 13 QGSTSENITQKVVWV-EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp ---CCTTEEEEEEEC-CGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred cCCCCCCceEEEEEe-CcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 445677899999877 4567999999999876 57899999999999999999999999999999999999887
No 79
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.09 E-value=3.8e-10 Score=98.51 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=50.6
Q ss_pred CCCcEEEeCcHHHHHHHHcCC-C-CCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 14 FSCDILISTPLRLRLAIRRKK-I-DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~-~-~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+++|+|+||+++..++.... . .++...++|+||||++... .....|.+. + ++.++++||||...
T Consensus 374 ~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~----~~~~~I~~~-~-p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 374 DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG----EAQKNLKKK-F-KRYYQFGFTGTPIF 440 (1038)
T ss_dssp SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH----HHHHHHHHH-C-SSEEEEEEESSCCC
T ss_pred CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch----HHHHHHHHh-C-CcccEEEEeCCccc
Confidence 579999999999999887542 2 4567889999999998542 335667777 4 46899999999874
No 80
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=84.21 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCCcEEEeCcHHHHHHHHcCC------CCCCCeeEEEEeccccccccCCChhhH-HHHHhhCC------------CCCce
Q 030396 14 FSCDILISTPLRLRLAIRRKK------IDLSRVEYLVLDEADKLFEVGNLLKHI-DPVVKACS------------NPSIV 74 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~------~~~~~l~~lViDE~d~ll~~~~~~~~i-~~i~~~~~------------~~~~q 74 (178)
.+++|+|+||+++...+.... ..+.+++++|+||||.+...+ +...+ ..++.... .+..+
T Consensus 131 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (216)
T 3b6e_A 131 KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQ 209 (216)
T ss_dssp HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCE
T ss_pred cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC-cHHHHHHHHHHHhcccccccccccCCCCcce
Confidence 458999999999999987643 567899999999999998776 44444 33332211 15789
Q ss_pred EEEEeec
Q 030396 75 RSLFSAT 81 (178)
Q Consensus 75 ~i~~SAT 81 (178)
++++|||
T Consensus 210 ~l~lSAT 216 (216)
T 3b6e_A 210 ILGLTAS 216 (216)
T ss_dssp EEEEECC
T ss_pred EEEeecC
Confidence 9999998
No 81
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.47 E-value=9.8e-11 Score=82.11 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=61.2
Q ss_pred CCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 110 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 110 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.++.|.++.+.....|...|.++++.....++||||++++.|+.++..|...|+.+..+||+|++.+|
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r 69 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 69 (170)
Confidence 45778887776647899999999998778899999999999999999999999999999999999887
No 82
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.6e-08 Score=86.64 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|...+.+++... ...++||||+....++.++..|...|+++..+||+++..+|
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 4677777777754 35799999999999999999999999999999999999887
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.91 E-value=3.5e-08 Score=82.62 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 124 GKLLALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 124 ~k~~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.|...+..++.. ....++||||++...++.++..|...|+++..+||++++++|
T Consensus 399 ~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R 455 (644)
T 1z3i_X 399 GKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKR 455 (644)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHH
Confidence 355555555543 347899999999999999999999999999999999998877
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.88 E-value=4.5e-09 Score=80.17 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=59.4
Q ss_pred CceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 111 SIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 111 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
.+.|+++.+. ..+|...+.++++....+++||||+|++.++.++..|...|+.+..+||+|++++|
T Consensus 2 ~v~~~~i~~~-~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r 67 (300)
T 3i32_A 2 TYEEEAVPAP-VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGER 67 (300)
T ss_dssp CSEEEEEECC-SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHH
T ss_pred ceEEEEEECC-HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 3567777764 46799999999998889999999999999999999999999999999999999876
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.83 E-value=5.4e-09 Score=75.80 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=57.7
Q ss_pred ceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 112 IKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 112 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
+.+..+.+ +...|...+.++++....+++||||+|++.++.++..|...|+++..+||+|++++|
T Consensus 6 ~~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r 70 (212)
T 3eaq_A 6 YEEEAVPA-PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGER 70 (212)
T ss_dssp BCCEEEEC-CTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHH
T ss_pred eeeeEEeC-CHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 44555555 556799999999998888999999999999999999999999999999999999876
No 86
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.74 E-value=5.2e-09 Score=78.91 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=50.9
Q ss_pred CCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHH
Q 030396 14 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF 85 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~ 85 (178)
.+++|+|+||+++... ....+.+++++|+||||.+.. +.+..+++. +....+++++|||.+..
T Consensus 203 ~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~-~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG-----KSISSIISG-LNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTT-CTTCCEEEEECSSCCTT
T ss_pred cCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc-----ccHHHHHHH-hhcCCeEEEEeCCCCCc
Confidence 5689999999976433 334567899999999999964 468888888 66689999999999865
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.63 E-value=2.1e-06 Score=73.52 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=36.3
Q ss_pred HhccCCCcEEEeCcHHH-HHHHHcCC------CCCC---CeeEEEEeccccccc
Q 030396 10 DLSKFSCDILISTPLRL-RLAIRRKK------IDLS---RVEYLVLDEADKLFE 53 (178)
Q Consensus 10 ~~l~~~~~Iii~TP~~l-~~~l~~~~------~~~~---~l~~lViDE~d~ll~ 53 (178)
+....+|+|+|||||++ .++++.+. +.++ .+.++|+||+|.++.
T Consensus 163 r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 163 RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 33345799999999999 89998763 5677 899999999999873
No 88
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.55 E-value=2.8e-07 Score=77.35 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=73.2
Q ss_pred eEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEE-EEEcCChhhHHHHHHHHHHhc--CCCCEEEEeCCchH
Q 030396 74 VRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQK-LVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKDR 150 (178)
Q Consensus 74 q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~ 150 (178)
.+..+|+|......++.+.|.-+ .+.++. ......+.+. .++. +...|...+.+.+... ..+|+||||+|++.
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~-t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFR-TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred HHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEe-cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 47799999998777766655333 444433 2232333332 3344 6677888888888753 47899999999999
Q ss_pred HHHHHHHhhhCCCceEeeecCCCcccc
Q 030396 151 AKELYGELAFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 151 ~~~l~~~L~~~g~~~~~lh~~~~~~~R 177 (178)
++.++..|...|+++..+||+..+++|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~ 513 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEA 513 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHH
Confidence 999999999999999999999665554
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.34 E-value=9.5e-07 Score=65.00 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=45.2
Q ss_pred CCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 15 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..+|+|+||+++......- ..+++++|+||+|.+.+.. +..++.. . ...+++++|||.+.
T Consensus 171 ~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~-----~~~i~~~-~-~~~~~l~LSATp~r 230 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAES-----YVQIAQM-S-IAPFRLGLTATFER 230 (237)
T ss_dssp CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTT-----HHHHHHT-C-CCSEEEEEEESCC-
T ss_pred cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChH-----HHHHHHh-c-cCCEEEEEecCCCC
Confidence 5689999999987666521 2457899999999997665 4556666 3 36788999999874
No 90
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.98 E-value=7.7e-06 Score=61.38 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhC-CCceEeeecCCCcccc
Q 030396 121 SEEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFD-DIRAGVIHSDLSQTQV 177 (178)
Q Consensus 121 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~-g~~~~~lh~~~~~~~R 177 (178)
....|...+.+++... ...++||||++...++.++..|... |+++..+||++++++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKER 152 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHH
Confidence 4567999999999865 6789999999999999999999885 9999999999998877
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.21 E-value=0.00026 Score=58.17 Aligned_cols=43 Identities=28% Similarity=0.284 Sum_probs=33.3
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCC-CCeeEEEEeccccccc
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDL-SRVEYLVLDEADKLFE 53 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~-~~l~~lViDE~d~ll~ 53 (178)
.....++|||+||+.|.+...++.+.+ .....+||||||.|.+
T Consensus 144 ~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 144 NSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 334679999999999998764443332 4668999999999987
No 92
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.13 E-value=0.0013 Score=53.91 Aligned_cols=40 Identities=23% Similarity=0.102 Sum_probs=29.8
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCC-------CCCCeeEEEEecccccc
Q 030396 13 KFSCDILISTPLRLRLAIRRKKI-------DLSRVEYLVLDEADKLF 52 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~-------~~~~l~~lViDE~d~ll 52 (178)
...++|||+|++.+.+....+.+ .+.....+||||||.+.
T Consensus 142 ~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 142 LKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 45789999999999975432221 23567899999999994
No 93
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=95.02 E-value=0.021 Score=36.18 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHHhc-CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 130 RQSFAES-LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 130 ~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.+.+... ..+++++||.+-.++...+..|.+.|+++..+.||+.
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344433 3568999999999999999999999999999999864
No 94
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=94.87 E-value=0.023 Score=34.98 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 139 PPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
+++++||.+-.++...+..|...|+++..+.||+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 789999999999999999999999998899998763
No 95
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=94.68 E-value=0.023 Score=35.44 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.+++++||.+-.++...+..|...|+++..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 567999999999999999999999999999999864
No 96
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=94.55 E-value=0.023 Score=35.63 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..++++||++-.++...+..|...|+++..+.||+.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 567999999999999999999999999999998864
No 97
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=94.51 E-value=0.023 Score=35.82 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.++++++|.+-.++...+..|.+.||++..+.||+.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 567999999999999999999999999998888764
No 98
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=93.89 E-value=0.09 Score=33.29 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=33.8
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+.+++++||++-.++...+..|...|++...+.||+..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 346789999999999999999999999966889898753
No 99
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=93.72 E-value=0.052 Score=34.19 Aligned_cols=37 Identities=5% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
...++++||++-.++...+..|...|++ +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999999999999999999994 888988864
No 100
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=93.33 E-value=0.1 Score=34.93 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|||++-.++...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 457899999998899999999999999 5999999984
No 101
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=93.07 E-value=0.07 Score=34.86 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..+++++||++-.++...+..|...|++ +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3578999999999999999999999995 889999874
No 102
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=92.98 E-value=0.11 Score=33.77 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCEEEEe-CCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 139 PPVLIFV-QSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 139 ~~~lIF~-~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+++++|| ++-.++...+..|...|+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 5888899999999999999999999875
No 103
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=92.91 E-value=0.062 Score=33.85 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+.+++++||.+-.++...+..|...|+ ++..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 357899999999999999999999999 4888888864
No 104
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=92.80 E-value=0.076 Score=35.14 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+.++++|||.+-.++...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 467899999999999999999999999 5899999864
No 105
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=92.79 E-value=0.072 Score=35.61 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCEEEEeCCc--hHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSK--DRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~--~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.++++|||.+- .++...+..|...|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 56799999987 6899999999999999999999864
No 106
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=92.66 E-value=0.043 Score=35.65 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=35.0
Q ss_pred HHHHHHhc-CCCCEEEEeCCchH--HHHHHHHhhhCCCceEeeecCCC
Q 030396 129 LRQSFAES-LNPPVLIFVQSKDR--AKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 129 l~~ll~~~-~~~~~lIF~~t~~~--~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+.+.+... +.+++++||.+-.+ +...+..|...|+++..+.||+.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33444443 34679999998877 89999999999999999988864
No 107
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=92.55 E-value=0.32 Score=28.94 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=31.0
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~~ 174 (178)
+..++++||++-.++...+..|.+.|++ +..+ ||+..
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 4577999999999999999999999995 6666 87653
No 108
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.1 Score=34.37 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..+++++||.+-.++...+..|.+.|++ +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3567999999999999999999999994 888988864
No 109
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=91.73 E-value=0.086 Score=34.71 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
...+++|||.+-.++...+..|...|++ +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3578999999999999999999999995 999998864
No 110
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=91.30 E-value=0.12 Score=34.32 Aligned_cols=36 Identities=6% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..++++||++-.++...+..|...|+. +..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 467999999999999999999999994 888888764
No 111
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=90.27 E-value=0.19 Score=32.96 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=32.6
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+.+++++||.+=.++...+..|.+.|| ++..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 357899999999999999999999999 5889999983
No 112
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=90.13 E-value=0.29 Score=36.29 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 127 LALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 127 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
..+...+...+.+++++||.+-.+|...+..|...|+ ++..+.||+.
T Consensus 170 ~~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 170 DYVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp HHHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3444445555678999999999999999999999999 6889998864
No 113
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=89.93 E-value=0.24 Score=33.44 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=31.3
Q ss_pred CCCEEEEeCCc---------hHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSK---------DRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~---------~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.++++|||.+- ..+..++..|...|+++..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 57899999887 4588899999999999999999864
No 114
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=88.82 E-value=0.66 Score=34.24 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~~ 174 (178)
..+++++||.+-.++...+..|...|+ ++..+.||+..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 467899999999999999999999999 59999999863
No 115
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=87.43 E-value=2 Score=35.71 Aligned_cols=84 Identities=8% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCceEEEEeecCcHHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC--------hhh----HHHHHHHHHHhcCC
Q 030396 71 PSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS--------EEG----KLLALRQSFAESLN 138 (178)
Q Consensus 71 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~--------~~~----k~~~l~~ll~~~~~ 138 (178)
....+|++|||+++ ...+.....-++..+..+. .....+. ..+.+.+ ... -...+..+++.. +
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~s-pf~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~ 448 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGE-IFPPENR--YIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-K 448 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCC-CSCGGGE--EEEEECCC-------CHHHHHHHHHHHHHHHHHH-C
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCC-CCCHHHe--EEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-C
Confidence 56778999999987 4444444433333333221 1122222 1211111 111 122334444444 6
Q ss_pred CCEEEEeCCchHHHHHHHHhh
Q 030396 139 PPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l~~~L~ 159 (178)
+.++||++|-...+.+++.|.
T Consensus 449 g~~lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 449 KNTIVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp SCEEEEESCHHHHHHHTSSCC
T ss_pred CCEEEEeCCHHHHHHHHHHHH
Confidence 789999999999999999887
No 116
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=86.51 E-value=0.38 Score=31.34 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCEEEEeCCchH---------HHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDR---------AKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~---------~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..+++|||++-.+ +.+++..|...|+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4789999987665 46788899999999999999864
No 117
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.83 E-value=1.3 Score=36.71 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=28.8
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
..+++|+|||+ |++ .+.+..+++. ++...|++++.-
T Consensus 262 ~~d~lIIDEAs-ml~----~~~~~~Ll~~-l~~~~~liLvGD 297 (608)
T 1w36_D 262 HLDVLVVDEAS-MID----LPMMSRLIDA-LPDHARVIFLGD 297 (608)
T ss_dssp SCSEEEECSGG-GCB----HHHHHHHHHT-CCTTCEEEEEEC
T ss_pred CCCEEEEechh-hCC----HHHHHHHHHh-CCCCCEEEEEcc
Confidence 67899999999 444 5667888888 788899998853
No 118
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=85.73 E-value=0.99 Score=33.33 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhh-hCCC-ceEeeecCCC
Q 030396 127 LALRQSFAE---SLNPPVLIFVQSKDRAKELYGELA-FDDI-RAGVIHSDLS 173 (178)
Q Consensus 127 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~-~~g~-~~~~lh~~~~ 173 (178)
..+.+.+.. ...++++|||.+-.++...+..|. ..|+ ++..+.||+.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 344455554 235679999999999999999998 8999 6889998864
No 119
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=85.25 E-value=1.8 Score=33.03 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 122 EEGKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 122 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+.|+..|..++... ...+++||++..+.-+-+.+++...|++..-+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 457888888888743 36689999999999999999999999999999988543
No 120
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=84.61 E-value=0.87 Score=33.59 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCchH-HHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDR-AKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~-~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|||.+-.. +..++..|...|+ ++..+.||+.
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46779999988666 8899999999999 6889998754
No 121
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=84.15 E-value=0.77 Score=33.66 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+.+++++||++-.++...+..|...|+ ++..+.||+.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 456799999999999999999999999 5889988764
No 122
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=83.87 E-value=1.3 Score=33.05 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
..+++++||.+=.++...+..|...|++ +..+.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4678999999999999999999999995 888988764
No 123
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=83.48 E-value=0.72 Score=33.02 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=32.5
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
..+++++||++-.++...+..|...|.++..+.||+.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 4567999999999999999999999977888888764
No 124
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=82.89 E-value=1.6 Score=31.95 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=30.7
Q ss_pred CCCCEEEEeCCch-HHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKD-RAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~-~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|||++-. .+...+..|...|+ ++..+.||+.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567999998776 88899999999999 5888988754
No 125
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=82.66 E-value=2.2 Score=31.23 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh-CCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF-DDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~-~g~-~~~~lh~~~~ 173 (178)
..+++++||.+-.++...+..|.+ .|+ ++..+.||+.
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 467899999999999999999986 899 4889988764
No 126
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=82.33 E-value=6 Score=32.22 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=17.9
Q ss_pred CCCCEEEEeCCchHHHHHHH
Q 030396 137 LNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~ 156 (178)
.++.++||++|-+..+.+++
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~ 411 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS 411 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT
T ss_pred CCCCEEEEecCHHHHHHHHH
Confidence 36789999999999999987
No 127
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=81.45 E-value=1.9 Score=31.58 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCc-hHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSK-DRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~-~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|||++- ..+...+..|...|+ ++..+.||+.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 356799999884 467888889999999 6889998753
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.41 E-value=3.9 Score=28.01 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=25.8
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..-..+++||+|.+.... ...+..++.. .+.+..+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~~--~~~l~~~l~~-~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTADA--QAALRRTMEM-YSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHHH--HHHHHHHHHH-TTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHHH--HHHHHHHHHh-cCCCCeEEEEe
Confidence 456789999999985533 5566666666 45555555443
No 129
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=80.84 E-value=1.8 Score=28.89 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCEEEE-e-CCchHHHHHH----HHhhhCCC---ceEeeecCCC
Q 030396 126 LLALRQSFAESLNPPVLIF-V-QSKDRAKELY----GELAFDDI---RAGVIHSDLS 173 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF-~-~t~~~~~~l~----~~L~~~g~---~~~~lh~~~~ 173 (178)
...+...+... ..+++|| | .+-.++...+ ..|...|+ ++..+.||+.
T Consensus 56 ~~~l~~~l~~~-~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 56 YEKLAKTLFEE-KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHHT-TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHhccc-CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 33344444332 3455555 9 4554544444 78888897 6888998864
No 130
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=80.62 E-value=2 Score=32.48 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=34.7
Q ss_pred HHHHHHHh---cCCCCEEEEeCCch-HHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 128 ALRQSFAE---SLNPPVLIFVQSKD-RAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 128 ~l~~ll~~---~~~~~~lIF~~t~~-~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+...+.. ....+++|||++-. .+...+..|+..|+ ++..+.||+.
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHH
Confidence 34444443 24578999998776 78999999999999 5899988753
No 131
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=80.33 E-value=0.89 Score=28.98 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=29.2
Q ss_pred CEEEEeCCchHHHHHHHHhhhC------CC-ceEeeecCCC
Q 030396 140 PVLIFVQSKDRAKELYGELAFD------DI-RAGVIHSDLS 173 (178)
Q Consensus 140 ~~lIF~~t~~~~~~l~~~L~~~------g~-~~~~lh~~~~ 173 (178)
++++||.+-.++...+..|... |+ ++..+.||+.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 8999999999999999999887 45 7888988864
No 132
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=78.88 E-value=1.6 Score=32.16 Aligned_cols=37 Identities=5% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCCEEEEeCCch-HHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKD-RAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~-~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+..++++||++-. .+...+..|...|+ ++..+.||+.
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567999998866 68889999999999 5888988763
No 133
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=78.66 E-value=0.68 Score=38.53 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=26.2
Q ss_pred cCCCcEEEeCcHHHHHHH-HcC-----CCCCCCeeEEEEeccccccc
Q 030396 13 KFSCDILISTPLRLRLAI-RRK-----KIDLSRVEYLVLDEADKLFE 53 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l-~~~-----~~~~~~l~~lViDE~d~ll~ 53 (178)
...+||||+.-.-|++.. +.+ .++++ =..+||||||.|.+
T Consensus 173 ~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~-~~ivI~DEAHNL~d 218 (620)
T 4a15_A 173 LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRN-QIVIILDEAHNLPD 218 (620)
T ss_dssp GGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGG-GEEEEETTGGGHHH
T ss_pred hhcCCEEEeCchhhcCHHHHHHHHHhhccCcC-CeEEEEECCCchHH
Confidence 357899998876555433 221 12333 36999999999964
No 134
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=78.46 E-value=4.5 Score=32.32 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=33.1
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~~~ 176 (178)
..++||.|+|+.-+...+..+... |+++..++|+.+..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSV 94 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchh
Confidence 678999999999998888777654 999999999987654
No 135
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=78.03 E-value=1.9 Score=32.34 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=35.3
Q ss_pred HHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 128 ALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 128 ~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+.+.+.. ...+++++||++=.++...+..|...|+ ++..+.|++.
T Consensus 241 ~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 241 EIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 34444442 2357899999998888899999999999 6888888764
No 136
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=78.01 E-value=1.4 Score=35.85 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.+++++||++-.++...+..|.+.|+++..+.||+.
T Consensus 524 ~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 524 DKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred cCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 467999999999999999999999999999999874
No 137
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=77.68 E-value=2.5 Score=33.20 Aligned_cols=47 Identities=9% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 127 LALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 127 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
..+.+.+.. ...+++++||++-.++...+..|...|+ ++..+.|++.
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 334444443 2356799999999999999999999999 6889998863
No 138
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=77.50 E-value=1.7 Score=35.58 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=33.1
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+.+++++||++-.++...+..|.+.||++..+.||+.
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 3568999999999999999999999999999988864
No 139
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=77.05 E-value=1.6 Score=30.05 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=29.6
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
...++++||.+.-++.. ....+..+++. .....|++++|
T Consensus 86 ~~~~llLDEp~a~LD~~-~~~~~~~~l~~-~~~~~~~ivit 124 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDA-NVKRVADLIKE-SSKESQFIVIT 124 (173)
T ss_dssp CCSEEEEESTTTTCCHH-HHHHHHHHHHH-HTTTSEEEEEC
T ss_pred CCCEEEECCCccCCCHH-HHHHHHHHHHH-hccCCEEEEEE
Confidence 45799999999999887 67777777776 45567877665
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.55 E-value=2.4 Score=32.07 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
.+.+.+|+||+|.| +.. ....+..++.. .+.+..+++.|..
T Consensus 133 ~~~~vlilDE~~~L-~~~-~~~~L~~~le~-~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKD-AQAALRRTMEK-YSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTSS-CHH-HHHHHHHHHHH-STTTEEEEEEESC
T ss_pred CCCeEEEEeCcccc-CHH-HHHHHHHHHHh-hcCCCEEEEEeCC
Confidence 36789999999995 444 46667777777 5556655555543
No 141
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=76.30 E-value=15 Score=24.78 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=39.9
Q ss_pred EEEcCChhhHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 116 LVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
+..+.+..+-...+.+.+.. .....+.|.|.+..++..+.+.|...|+++..+.++
T Consensus 37 ~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~ 94 (174)
T 3dmn_A 37 VVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTE 94 (174)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccc
Confidence 44455555555555555542 236789999999999999999999998887766543
No 142
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.24 E-value=5.4 Score=30.78 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=35.2
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhh---CCCceEeeecCCCcc
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAF---DDIRAGVIHSDLSQT 175 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~---~g~~~~~lh~~~~~~ 175 (178)
....+++|.++|+.-|...++.+.. .|+++..++|+.+..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~ 104 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKE 104 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChh
Confidence 3467899999999999999999987 688999999998863
No 143
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=76.17 E-value=2.3 Score=34.64 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCCceEeeec-CCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHS-DLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~-~~~ 173 (178)
+.++++++|.+-.++...+..|...|+++..+.| |+.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3578999999988999999999999999999999 874
No 144
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=75.20 E-value=2.8 Score=29.64 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=40.8
Q ss_pred EEEcCChhhHHHH-HHHHHHh----cCCCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCcc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAE----SLNPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQT 175 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~~ 175 (178)
++..+....|... +.-++.. ....+++|.|+|++-+...++.+... ++++..++|+.+..
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLS 134 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHH
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHH
Confidence 3344444555433 3333332 33568999999999999998888653 67899999987653
No 145
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=75.02 E-value=4.9 Score=28.54 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=29.0
Q ss_pred CCCEEEEeCCch-HHHHHHHHhhhCCC-ceEeeecC
Q 030396 138 NPPVLIFVQSKD-RAKELYGELAFDDI-RAGVIHSD 171 (178)
Q Consensus 138 ~~~~lIF~~t~~-~~~~l~~~L~~~g~-~~~~lh~~ 171 (178)
..+++|||++-. .+..++..|. .|+ ++..+.||
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 678999999877 8899999999 999 48889887
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=75.00 E-value=6.2 Score=29.13 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=27.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
..-+.+|+||+|.+-... ...+..++.. .+....+++. ++-+
T Consensus 109 ~~~~vliiDe~~~l~~~~--~~~L~~~le~-~~~~~~~i~~-~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA--QQALRRTMEM-FSSNVRFILS-CNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHHH--HHHHHHHHHH-TTTTEEEEEE-ESCG
T ss_pred CCCeEEEEeCCCcCCHHH--HHHHHHHHHh-cCCCCeEEEE-eCCc
Confidence 456899999999995443 5556666666 4555555544 4444
No 147
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=74.93 E-value=1.8 Score=32.77 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=31.8
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh-CCCc-eEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF-DDIR-AGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~-~g~~-~~~lh~~~~ 173 (178)
..+++++||++=.++...+..|.+ .|++ +..+.|++.
T Consensus 258 ~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 258 PDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp TTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred CCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 357899999999999999999986 8994 888888754
No 148
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=74.57 E-value=2.1 Score=28.57 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=25.8
Q ss_pred CCCCEEEEeC-CchHHHHHHHHh--------hhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQ-SKDRAKELYGEL--------AFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~-t~~~~~~l~~~L--------~~~g~-~~~~lh~~~~ 173 (178)
..++++|||+ +-.++...+..| ...|+ ++..+.||+.
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 3467888998 655555555544 45898 7889999874
No 149
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.57 E-value=1.2 Score=29.57 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=26.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+.+.+|+||++.+.... ...+..+++.+......++++++..++
T Consensus 82 ~~~~lLilDE~~~~~~~~--~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE--QALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGCSEEEEESTTCCCSHH--HHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred hCCCEEEEeCccccChHH--HHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 356899999999864433 555666655522222333555566443
No 150
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=74.54 E-value=2.9 Score=31.01 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCCCEEEEeCC--c-hHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQS--K-DRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t--~-~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
...+++|||.+ - ..+..++..|...|+ ++..+.||+.
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 45679999987 3 347788899999999 6888998763
No 151
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.68 E-value=3 Score=30.32 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=26.3
Q ss_pred CCeeEEEEeccccccccC----CChhhH-HHHHhhCCC----CCceEEEEeecCcHH
Q 030396 38 SRVEYLVLDEADKLFEVG----NLLKHI-DPVVKACSN----PSIVRSLFSATLPDF 85 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~----~~~~~i-~~i~~~~~~----~~~q~i~~SAT~~~~ 85 (178)
.....+++||+|.++... .....+ ..+... +. ....++++.+|-.++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~-~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVL-LKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHH-TTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHH-hcCccCCCCCEEEEEecCChh
Confidence 346899999999985321 122222 223333 22 445666666776654
No 152
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=73.55 E-value=2.7 Score=32.61 Aligned_cols=36 Identities=8% Similarity=-0.139 Sum_probs=31.5
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+++++||++=.++...+..|...|+ ++..+.|++.
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 282 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWS 282 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHH
Confidence 57899999999999999999999999 4888888764
No 153
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=72.99 E-value=4.3 Score=31.46 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=29.2
Q ss_pred cCCCCEEEEe-CCc-hHHHHHHHHhhhCCCceEeeecCCC
Q 030396 136 SLNPPVLIFV-QSK-DRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~-~t~-~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.+..+++||| .+- ..+...+..|+..|+++..+.||+.
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 3467899999 443 3344788889999999999999974
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=72.74 E-value=6.5 Score=29.81 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=25.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhC--CCCCceEEEEeecCc
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKAC--SNPSIVRSLFSATLP 83 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~--~~~~~q~i~~SAT~~ 83 (178)
...-.+++||+|.+. + ...+..+++.. .....-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~--~--q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLL--S--EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSC--C--THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhh--c--chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 455689999999998 2 23344444421 233456667787764
No 155
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=72.44 E-value=3.1 Score=31.24 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
...-+.+|+||+|.|-... .+.+...+.. .++..-++++ ++-+
T Consensus 80 ~~~~kvviIdead~lt~~a--~naLLk~LEe-p~~~t~fIl~-t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA--ANAFLKALEE-PPEYAVIVLN-TRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH--HHHTHHHHHS-CCTTEEEEEE-ESCG
T ss_pred cCCceEEEeccHHHhCHHH--HHHHHHHHhC-CCCCeEEEEE-ECCh
Confidence 3567899999999996544 4555566665 4555555544 4444
No 156
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=72.31 E-value=17 Score=25.85 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred EEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 117 VFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 117 ~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
+..+...-|......++... ..+++|+|+++.-++...+.+.+.|.+ +..++|+..
T Consensus 113 l~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 113 IVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp EEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred EEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 33444556766665555554 689999999999999999999888888 888888754
No 157
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.84 E-value=6.9 Score=31.29 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~~~ 176 (178)
..++||.|+|+.-+...++.+... |+++..++|+.+..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 97 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 97 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcch
Confidence 678999999999999888877654 899999999986554
No 158
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=71.00 E-value=7.2 Score=27.99 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQ 174 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~ 174 (178)
...+++|.++|++-+...++.+... |+.+..++|+.+.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 151 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 151 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCCh
Confidence 3557999999999999888777554 8899999998764
No 159
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=70.72 E-value=4.1 Score=30.79 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=23.6
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
+.-+.+|+||+|.|-... .+.+...+.. .+.+.-+++.
T Consensus 107 ~~~kvviIdead~l~~~a--~naLLk~lEe-p~~~~~~Il~ 144 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA--ANALLKTLEE-PPAETWFFLA 144 (334)
T ss_dssp SSCEEEEESCGGGBCHHH--HHHHHHHHTS-CCTTEEEEEE
T ss_pred CCcEEEEECchhhcCHHH--HHHHHHHhcC-CCCCeEEEEE
Confidence 567899999999995544 4445555554 3444444444
No 160
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=70.27 E-value=3 Score=32.75 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=35.6
Q ss_pred HHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 128 ALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 128 ~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+...+.. ...+++++||.+=.++...+..|...|+ ++..+.||+.
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 44444432 2356799999999999999999999999 5888888753
No 161
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=69.57 E-value=12 Score=25.90 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~ 174 (178)
..+++|.|+|++-+...++.+... +.++..++|+.+.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 123 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSI 123 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCh
Confidence 348999999999999988877653 7899999998764
No 162
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=69.50 E-value=4 Score=32.92 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..++++|+|||++|-+.. .....++++. -..|.++.+
T Consensus 413 ~~~rlvvlDEA~kmD~~~--~~~~~~l~~~---lglQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAMS--INTLFELCER---LDMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGSCHHH--HHHHHHHHHH---TTCEEEEEE
T ss_pred CceeEEEEeccccCCHHH--HHHHHHHHHH---cCCEEEEEC
Confidence 589999999997774433 5555566666 388977643
No 163
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.41 E-value=5.1 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=23.0
Q ss_pred eeEEEEeccccccccC-CChhhHHHHHhhC---CCCCceEEEEeec
Q 030396 40 VEYLVLDEADKLFEVG-NLLKHIDPVVKAC---SNPSIVRSLFSAT 81 (178)
Q Consensus 40 l~~lViDE~d~ll~~~-~~~~~i~~i~~~~---~~~~~q~i~~SAT 81 (178)
-..+|+||||.++... ...+.. +++..+ -....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999996432 112222 222221 2234577777666
No 164
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=69.17 E-value=8.7 Score=32.76 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=30.1
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~~~ 176 (178)
..++||.|+|+.-+...+..+... |+++..+||+.+...
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 338 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhh
Confidence 678999999999999988877654 999999999986554
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.06 E-value=10 Score=28.56 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=26.2
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.-+.+|+||+|.+-... ...+..++.. .+....+++.
T Consensus 110 ~~~viiiDe~~~l~~~~--~~~L~~~le~-~~~~~~~il~ 146 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAA--QNALRRVIER-YTKNTRFCVL 146 (340)
T ss_dssp SCEEEEETTGGGSCHHH--HHHHHHHHHH-TTTTEEEEEE
T ss_pred CceEEEEeCCCCCCHHH--HHHHHHHHhc-CCCCeEEEEE
Confidence 46899999999985543 5667777777 5666665544
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=68.96 E-value=5.6 Score=27.55 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=21.8
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.-..+|+||+|.+.... ...+...+.. .+....+++.
T Consensus 126 ~~~vlviDe~~~l~~~~--~~~l~~~l~~-~~~~~~~i~~ 162 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHS--FNALLKTLEE-PPEHVKFLLA 162 (250)
T ss_dssp SSEEEEEETGGGSCHHH--HHHHHHHHHS-CCTTEEEEEE
T ss_pred CceEEEEECcccccHHH--HHHHHHHHhc-CCCceEEEEE
Confidence 34789999999974333 4445555554 3444444443
No 167
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=68.60 E-value=5.8 Score=30.14 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=65.4
Q ss_pred ChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHh----ccCcEEEEEcC-----Cc---------------c----c
Q 030396 57 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI----MHDAVRVIVGR-----KN---------------T----A 108 (178)
Q Consensus 57 ~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~----~~~~~~v~~~~-----~~---------------~----~ 108 (178)
..+....+++.+.....++.++|||...-++.+++.. .-.|..|.-.. .. . .
T Consensus 144 ~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG~~~~~~~~~~~~~~~~~~~~~dg~y~~~~~ 223 (327)
T 4as2_A 144 VFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKAN 223 (327)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEEECEEEECTTTCCEECHHHHHHTTCCCGGGG
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEeeeeeeecccccccccccccccccccccccc
Confidence 4455666666644467899999999998888887763 22332222110 00 0 0
Q ss_pred cCCceEEE--EEcCChhhHHHHHHHHHHhcCCCCEEEEeCC-chHHHHHHHHhhhCCCceEee
Q 030396 109 SESIKQKL--VFAGSEEGKLLALRQSFAESLNPPVLIFVQS-KDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 109 ~~~i~~~~--~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t-~~~~~~l~~~L~~~g~~~~~l 168 (178)
......-. ...+....|...+...++.. ..|+++|-|| ..+.+.|......-|+.....
T Consensus 224 ~~~~~~~~~~~p~~~~~GK~~~I~~~i~~g-~~Pi~a~Gns~dgD~~ML~~~~~~~~~~L~in 285 (327)
T 4as2_A 224 LDLEVTPYLWTPATWMAGKQAAILTYIDRW-KRPILVAGDTPDSDGYMLFNGTAENGVHLWVN 285 (327)
T ss_dssp TTCEEEEEECSSCSSTHHHHHHHHHHTCSS-CCCSEEEESCHHHHHHHHHHTSCTTCEEEEEC
T ss_pred ccccccccccccccccCccHHHHHHHHhhC-CCCeEEecCCCCCCHHHHhccccCCCeEEEEe
Confidence 00000111 11223556888888887544 6799999999 688888877665556544433
No 168
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=68.34 E-value=3 Score=33.21 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=31.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
.+++++||++-.++...+..|...|+ ++..+.|++.
T Consensus 427 ~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 427 DGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 56899999999999999999999999 4899988754
No 169
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=68.27 E-value=3.7 Score=33.43 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~ 173 (178)
+..+++|||++-..+...+..|...|+ ++..+.||+.
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~ 99 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLS 99 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHH
Confidence 467899999998899999999999999 5888888764
No 170
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=67.79 E-value=3.9 Score=35.02 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=29.5
Q ss_pred CCcEEEeCcHHHH-HHHHcCC------CCCCCeeEEEEecccccc
Q 030396 15 SCDILISTPLRLR-LAIRRKK------IDLSRVEYLVLDEADKLF 52 (178)
Q Consensus 15 ~~~Iii~TP~~l~-~~l~~~~------~~~~~l~~lViDE~d~ll 52 (178)
.|||+.||...+- +.|+.+. .-...+.+.|+||+|.++
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 4799999999876 6676542 125778999999999975
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=67.07 E-value=3 Score=27.86 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=11.5
Q ss_pred eeEEEEecccccc
Q 030396 40 VEYLVLDEADKLF 52 (178)
Q Consensus 40 l~~lViDE~d~ll 52 (178)
...+++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 4699999999997
No 172
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=66.89 E-value=17 Score=28.59 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=44.3
Q ss_pred EEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc-eEeeecCCCc
Q 030396 116 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR-AGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~-~~~lh~~~~~ 174 (178)
++..+....|.......+... ..+++|.|+++.-+...++.|.+.|.+ +..+||+...
T Consensus 112 ll~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 112 CIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE 170 (472)
T ss_dssp EEECCTTSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC
T ss_pred EEEeCCCCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC
Confidence 334444555655555555544 689999999999999999999888999 9999998764
No 173
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=66.57 E-value=2.8 Score=27.96 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=24.8
Q ss_pred EEEeC-CchHHHHHHHHhhh----------CCC-ceEeeecCCC
Q 030396 142 LIFVQ-SKDRAKELYGELAF----------DDI-RAGVIHSDLS 173 (178)
Q Consensus 142 lIF~~-t~~~~~~l~~~L~~----------~g~-~~~~lh~~~~ 173 (178)
++||+ +-.++...+..|.+ .|+ ++..+.||+.
T Consensus 93 v~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 93 VFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred EEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 45698 77788888888864 488 6889998864
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.46 E-value=4.7 Score=29.76 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=25.4
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
+-+.+|+||+|.+.... ...+..++.. .+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~--~~~L~~~le~-~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA--QQALRRTMEL-YSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH--HHTTHHHHHH-TTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH--HHHHHHHHhc-cCCCceEEEEe
Confidence 36899999999986544 4455566666 55556655544
No 175
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=66.22 E-value=4 Score=28.32 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCCeeEEEEeccccc--cccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 37 LSRVEYLVLDEADKL--FEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 37 ~~~l~~lViDE~d~l--l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
....+.+|+||++.+ .+.. |.+.+..+++. ..-+++-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~-~~~~l~~~l~~----~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQL-FIQAVRQTLST----PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSH-HHHHHHHHHHC----SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHH-HHHHHHHHHhC----CCcEEEEEeecC
Confidence 456789999999888 3333 66666666664 222454466754
No 176
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=66.21 E-value=10 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=11.3
Q ss_pred eeEEEEecccccc
Q 030396 40 VEYLVLDEADKLF 52 (178)
Q Consensus 40 l~~lViDE~d~ll 52 (178)
...+++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 116 NVILFIDELHTMV 128 (195)
T ss_dssp TEEEEEETGGGGT
T ss_pred CeEEEEeCHHHHh
Confidence 4589999999996
No 177
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=65.45 E-value=7.4 Score=27.08 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=37.6
Q ss_pred EEEcCChhhHHHH-HHHHHHh----cCCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAE----SLNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQT 175 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~ 175 (178)
++..+....|... +..++.. ....+++|.++|+.-+...++.+.. .++++..++|+.+..
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 123 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchH
Confidence 4444455556543 4444432 3356899999999999988887754 478899999987654
No 178
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=65.17 E-value=4.5 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=25.1
Q ss_pred CCeeEEEEecccccc-ccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLF-EVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll-~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
...+.+++||+|.+. ... ...+..++.. .+.+.++++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~--~~~L~~~le~-~~~~~~iI~~ 142 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAES--QRHLRSFMEA-YSSNCSIIIT 142 (324)
T ss_dssp SCEEEEEEESCCCGGGHHH--HHHHHHHHHH-HGGGCEEEEE
T ss_pred CCCeEEEEECCcccCcHHH--HHHHHHHHHh-CCCCcEEEEE
Confidence 367899999999996 333 5556666665 4445565553
No 179
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=63.95 E-value=6.6 Score=29.27 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=29.2
Q ss_pred cCCCCEEEEeCC---chHHHHHHHHhhhCCCc-eEeeecCCC
Q 030396 136 SLNPPVLIFVQS---KDRAKELYGELAFDDIR-AGVIHSDLS 173 (178)
Q Consensus 136 ~~~~~~lIF~~t---~~~~~~l~~~L~~~g~~-~~~lh~~~~ 173 (178)
....+++|||.+ ...+..++..|+..|++ +..+.||+.
T Consensus 105 ~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~ 146 (302)
T 3olh_A 105 GAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLR 146 (302)
T ss_dssp CSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHH
Confidence 345679999964 23588889999999994 888888754
No 180
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=63.19 E-value=6.7 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCchHH----------HHHHHHhhhCCCceEeeecCCC
Q 030396 137 LNPPVLIFVQSKDRA----------KELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~----------~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
...+++|||.+-... .++...|...|+++..+.||+.
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~ 137 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFS 137 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHH
Confidence 457899999764321 3344445456999889999874
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=63.08 E-value=7.2 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.1
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.-+.+|+||+|.+-... ...+...+.. .+....+++.
T Consensus 119 ~~~vliiDe~~~l~~~~--~~~Ll~~le~-~~~~~~~Il~ 155 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHS--FNALLKTLEE-PPEHVKFLLA 155 (373)
T ss_dssp SSEEEEEECGGGSCHHH--HHHHHHHHHS-CCSSEEEEEE
T ss_pred CeEEEEEECcchhcHHH--HHHHHHHHhc-CCCceEEEEE
Confidence 35799999999985433 4555555655 4444444444
No 182
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.94 E-value=6.3 Score=29.52 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=26.9
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
..+.+++||+|.+.... ...+..++.. .+....+++. ++-+.
T Consensus 133 ~~~vliiDE~~~l~~~~--~~~Ll~~le~-~~~~~~~il~-~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA--QSALRRTMET-YSGVTRFCLI-CNYVT 174 (353)
T ss_dssp SCEEEEETTGGGSCHHH--HHHHHHHHHH-TTTTEEEEEE-ESCGG
T ss_pred CceEEEEECCCccCHHH--HHHHHHHHHh-cCCCceEEEE-eCchh
Confidence 44699999999996543 5556666766 4555555553 44443
No 183
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=62.48 E-value=2.6 Score=28.50 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=26.2
Q ss_pred CCCeeEEEEeccccc-cccCCChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 37 LSRVEYLVLDEADKL-FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 37 ~~~l~~lViDE~d~l-l~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
+.+.+++|+||++.. ++.. ....+..+++........ +++|+..++
T Consensus 98 ~~~~~llilDE~~~~~~~~~-~~~~l~~ll~~~~~~~~~-ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDW-QRELISYIITYRYNNLKS-TIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHH-HHHHHHHHHHHHHHTTCE-EEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHH-HHHHHHHHHHHHHHcCCC-EEEEcCCCh
Confidence 346789999999954 2322 355666666652223444 455555443
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=62.39 E-value=7.4 Score=28.58 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.0
Q ss_pred CCeeEEEEeccccccc
Q 030396 38 SRVEYLVLDEADKLFE 53 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~ 53 (178)
..-+.+|+||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 4568899999999854
No 185
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=62.16 E-value=7.2 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=19.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
.....+++||+|.+.........+..+++.
T Consensus 129 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 158 (387)
T 2v1u_A 129 RGIYIIVLDEIDFLPKRPGGQDLLYRITRI 158 (387)
T ss_dssp CSEEEEEEETTTHHHHSTTHHHHHHHHHHG
T ss_pred CCeEEEEEccHhhhcccCCCChHHHhHhhc
Confidence 345699999999997651024556666654
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=61.88 E-value=3.2 Score=31.03 Aligned_cols=44 Identities=11% Similarity=-0.005 Sum_probs=25.1
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
+...+++||+|.+.........+..++..+.....+++ ++++.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~ii-i~~~~~ 141 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQII-LASDRH 141 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEE-EEESSC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEE-EEecCC
Confidence 35799999999986421124445555544223345544 455544
No 187
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=61.76 E-value=7.8 Score=26.96 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=39.2
Q ss_pred EEEcCChhhHHHH-HHHHHHhc----CCCCEEEEeCCchHHHHHHHHhhhC--------CCceEeeecCCCc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAES----LNPPVLIFVQSKDRAKELYGELAFD--------DIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~--------g~~~~~lh~~~~~ 174 (178)
++..+....|... +.-++... ...+++|.|+|++-+...++.+.+. ++.+..++|+.+.
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 116 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDK 116 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHH
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCH
Confidence 3344455555443 33344332 3568999999999999988877543 6788889988654
No 188
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=60.94 E-value=18 Score=27.91 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=40.6
Q ss_pred EcCChhhHHHHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhC-CC---ceEeeecCCCccc
Q 030396 118 FAGSEEGKLLALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFD-DI---RAGVIHSDLSQTQ 176 (178)
Q Consensus 118 ~~~~~~~k~~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~-g~---~~~~lh~~~~~~~ 176 (178)
..+....|.......+.. ....++||.|+++.-+...++.+.+. |. ++..+||+....+
T Consensus 29 ~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 94 (494)
T 1wp9_A 29 VLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE 94 (494)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhh
Confidence 333444454433333322 35789999999999999888888665 65 8999999887543
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=60.78 E-value=1.3 Score=31.19 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=18.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
.....+|+||+|.+.........+..++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 345799999999985422124445555444
No 190
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.66 E-value=26 Score=21.38 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=39.3
Q ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCC
Q 030396 119 AGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDL 172 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~ 172 (178)
+.++..-...+..+-......+++|..|.+.-....-+.....||++..+--+-
T Consensus 32 vndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdq 85 (134)
T 2lci_A 32 VNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQ 85 (134)
T ss_dssp ECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECS
T ss_pred cCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecC
Confidence 333333333444555566688999999999999999998999999998876543
No 191
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=60.32 E-value=5.9 Score=27.90 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=27.0
Q ss_pred CCCE--EEEeC-CchHHHHHHHHhhh----------CCC-ceEeeecCCC
Q 030396 138 NPPV--LIFVQ-SKDRAKELYGELAF----------DDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~--lIF~~-t~~~~~~l~~~L~~----------~g~-~~~~lh~~~~ 173 (178)
.+++ ++||+ +-.++...+..|.+ .|+ ++..+.||+.
T Consensus 109 d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~ 158 (211)
T 1qb0_A 109 DKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYK 158 (211)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHH
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHH
Confidence 3455 66898 77777777877764 698 6889998864
No 192
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=60.12 E-value=14 Score=25.77 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh---CCCceEeeecCCCccc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF---DDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~---~g~~~~~lh~~~~~~~ 176 (178)
...+++|.++|++-|..+++.+.. .|+++..++|+.+..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNG 135 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHH
Confidence 456799999999999999988876 4788999999876543
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=60.10 E-value=7.2 Score=28.69 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=11.2
Q ss_pred eEEEEeccccccc
Q 030396 41 EYLVLDEADKLFE 53 (178)
Q Consensus 41 ~~lViDE~d~ll~ 53 (178)
..+++||+|.+..
T Consensus 132 ~vl~iDEid~l~~ 144 (309)
T 3syl_A 132 GVLFIDEAYYLYR 144 (309)
T ss_dssp SEEEEETGGGSCC
T ss_pred CEEEEEChhhhcc
Confidence 5899999999963
No 194
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=58.89 E-value=22 Score=31.73 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=35.5
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhh---CCCceEeeecCCCccc
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAF---DDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~---~g~~~~~lh~~~~~~~ 176 (178)
....+++|.++|++-|..+++.|.. .|+++..+||+++..+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~e 162 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEE 162 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHH
Confidence 3467899999999999999999988 5789999999998743
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.30 E-value=5.5 Score=32.87 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=35.3
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~ 176 (178)
.+.+||.+++++-++...+.|...|+++..++|+++..+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~ 122 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEH 122 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH
Confidence 468999999999999999999999999999999987653
No 196
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=57.84 E-value=15 Score=25.06 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=36.4
Q ss_pred EEEcCChhhHHHHHHHHHH----h----cCCCCEEEEeCCchHHHH-HHHHhh---hCCCceEeeecCCCccc
Q 030396 116 LVFAGSEEGKLLALRQSFA----E----SLNPPVLIFVQSKDRAKE-LYGELA---FDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~----~----~~~~~~lIF~~t~~~~~~-l~~~L~---~~g~~~~~lh~~~~~~~ 176 (178)
++..+....|.......+. . ....+++|.|+++.-++. ..+.+. ..++++..++|+.+..+
T Consensus 52 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 52 IICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKI 124 (216)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccch
Confidence 4455555556443333222 1 235789999999998877 555443 34789999999876543
No 197
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.82 E-value=10 Score=26.88 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQT 175 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~ 175 (178)
..+++|.|+|++-+..+++.+.. .|+.+..++|+.+..
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 143 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Confidence 56799999999999998777754 488999999987654
No 198
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=57.77 E-value=7.9 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=26.0
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
....+++||+|.+.........+..++..+.....++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 678999999999975311345555555542334566555443
No 199
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=57.09 E-value=14 Score=27.65 Aligned_cols=43 Identities=7% Similarity=-0.014 Sum_probs=23.9
Q ss_pred CCCeeEEEEecccc-ccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 37 LSRVEYLVLDEADK-LFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 37 ~~~l~~lViDE~d~-ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
++.-+.+|+||+|. +-..+ .+.+...+.. .++...+++.+.+.
T Consensus 74 f~~~kvvii~~~~~kl~~~~--~~aLl~~le~-p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAI--NEQLLTLTGL-LHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTH--HHHHHHHHTT-CBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCChHH--HHHHHHHHhc-CCCCeEEEEEcCCC
Confidence 34557788888887 53322 4555555555 44455544444333
No 200
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=56.96 E-value=18 Score=25.31 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=30.4
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCcc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQT 175 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~~ 175 (178)
...+++|.|+|+.-+...++.+... ++.+..++|+.+..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 138 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK 138 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHH
Confidence 3568999999999999988888654 57899999987643
No 201
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=56.75 E-value=2.3 Score=33.97 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~~~ 174 (178)
.+++++||.+-.++...+..|...|+ ++..+.||+..
T Consensus 425 ~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 425 NDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp --------------------------------------
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 46799999999999999999999999 78899998764
No 202
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=56.05 E-value=6.3 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=27.8
Q ss_pred CcEEEe---CcHHHHHHHHcCCCCCCCeeEEEEeccc
Q 030396 16 CDILIS---TPLRLRLAIRRKKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 16 ~~Iii~---TP~~l~~~l~~~~~~~~~l~~lViDE~d 49 (178)
+.+.++ ||..+.+.|.++.++++++.++-+||-=
T Consensus 35 ~~l~LsgGstp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 35 ALLVVSGGSTPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp EEEEECCSSTTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred EEEEEcCCCCHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 445553 6888999998889999999999999954
No 203
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=55.88 E-value=25 Score=26.48 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCcc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQT 175 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~~ 175 (178)
..+++|.|+|+.-++..++.+... ++++..++|+.+..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 118 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIK 118 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHH
Confidence 458999999999999988877653 78999999987643
No 204
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=55.76 E-value=6.4 Score=28.31 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCCcEEEe---CcHHHHHHHHcCCCCCCCeeEEEEeccc
Q 030396 14 FSCDILIS---TPLRLRLAIRRKKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 14 ~~~~Iii~---TP~~l~~~l~~~~~~~~~l~~lViDE~d 49 (178)
+.+.+.++ ||..+.+.|....++++++.++-+||-=
T Consensus 34 ~~~~l~lsgGstp~~~y~~L~~~~i~w~~v~~f~~DEr~ 72 (232)
T 3lhi_A 34 GGAVLAVSGGRSPIAFFNALSQKDLDWKNVGITLADERI 72 (232)
T ss_dssp SCEEEEECCSSTTHHHHHHHHTSCCCGGGEEEEESEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCchheEEEEeeecc
Confidence 34555554 5888999988888999999999999943
No 205
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=55.61 E-value=38 Score=22.82 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=40.3
Q ss_pred EEEcCChhhHHHH-HHHHHHh-------cCCCCEEEEeCCchHHHHHHHHhhhC--CCceEeeecCCCc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAE-------SLNPPVLIFVQSKDRAKELYGELAFD--DIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~-------~~~~~~lIF~~t~~~~~~l~~~L~~~--g~~~~~lh~~~~~ 174 (178)
++..+....|... +.-++.. ....+++|.|+|+.-+...++.+... ++++..++|+.+.
T Consensus 42 li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
T 2gxq_A 42 IGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGY 110 (207)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCS
T ss_pred EEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCCh
Confidence 3344444555443 3334432 23567999999999999999998765 4688889988764
No 206
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=55.38 E-value=26 Score=29.02 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=31.2
Q ss_pred CCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCcc
Q 030396 139 PPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQT 175 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~~ 175 (178)
.++||.++|+.-+...++.+... |+++..++|+.+..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 102 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAEN 102 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCcccc
Confidence 78999999999888888777554 89999999998654
No 207
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=55.28 E-value=13 Score=25.29 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=30.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~ 174 (178)
..+++|.|+|+.-+...++.+... +.++..++|+.+.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL 112 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccH
Confidence 457999999999999888877542 6788999998764
No 208
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=54.95 E-value=3.8 Score=30.35 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=28.5
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+-+|||+|+..+++.|...|...||.+..+ .+++.
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~~~-~dlt~ 78 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQKF-LHLSM 78 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEEEE-ESCBH
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEEEe-eCCCH
Confidence 3458999999999999999999999987654 34443
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.86 E-value=8.1 Score=31.17 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=26.5
Q ss_pred CCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 38 SRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
..-..+++||+|.+.... .....+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh---cCCCEEEEEcCC
Confidence 345789999999996643 123455555554 345567776664
No 210
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=54.78 E-value=13 Score=32.44 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=29.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQTQ 176 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~~~ 176 (178)
..++||.|+|+.-+...+..+... |+++..+||+.+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~ 338 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhh
Confidence 578999999999999888877654 899999999986654
No 211
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=54.38 E-value=6.5 Score=28.32 Aligned_cols=36 Identities=33% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCCcEEEe---CcHHHHHHHHcCCCCCCCeeEEEEeccc
Q 030396 14 FSCDILIS---TPLRLRLAIRRKKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 14 ~~~~Iii~---TP~~l~~~l~~~~~~~~~l~~lViDE~d 49 (178)
+.+.+.++ ||..+.+.+....++++++.++-+||-=
T Consensus 37 ~~~~l~lsgGstp~~~y~~L~~~~idw~~v~~f~~DEr~ 75 (233)
T 3nwp_A 37 GKASLVVSGGSTPLKLFQLLSMKSIDWSDVYITLADERW 75 (233)
T ss_dssp SCEEEEECCSSTTHHHHHHHHHCCSCGGGEEEEESEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHHhcCCChhHeEEEeCeecc
Confidence 34555554 5888999888888999999999999943
No 212
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=54.13 E-value=22 Score=27.57 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=63.3
Q ss_pred ChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc---c-CcEEEEEcCCccccC-CceEEEE---EcCChhhHHHH
Q 030396 57 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM---H-DAVRVIVGRKNTASE-SIKQKLV---FAGSEEGKLLA 128 (178)
Q Consensus 57 ~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~-~i~~~~~---~~~~~~~k~~~ 128 (178)
..+.+..+++.+......+.++||.+..-++.+++... + .|..|.-..-..... .+.-.+. .......|...
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~gK~~~ 301 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREGKVQT 301 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHHHHHH
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCchHHH
Confidence 46777777777555689999999999999998888752 1 222221111000001 1111111 12355678888
Q ss_pred HHHHHHhc-CCCCEEEEeCCchHHHHHHH
Q 030396 129 LRQSFAES-LNPPVLIFVQSKDRAKELYG 156 (178)
Q Consensus 129 l~~ll~~~-~~~~~lIF~~t~~~~~~l~~ 156 (178)
+.+++... ...+++.|-++..+...|..
T Consensus 302 i~~~~~~~~~~~~i~a~GDs~~D~~ML~~ 330 (385)
T 4gxt_A 302 INKLIKNDRNYGPIMVGGDSDGDFAMLKE 330 (385)
T ss_dssp HHHHTCCTTEECCSEEEECSGGGHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCHhHHHHHhc
Confidence 88887643 35679999999999999865
No 213
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=52.72 E-value=21 Score=24.53 Aligned_cols=19 Identities=11% Similarity=-0.183 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhCCCceEe
Q 030396 149 DRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~~~ 167 (178)
.+|+.++..|+..||.+..
T Consensus 65 ~Da~~L~~~f~~LgF~V~~ 83 (178)
T 2h54_A 65 VDITGMTMLLQNLGYSVDV 83 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 6677777777777776654
No 214
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.60 E-value=8.7 Score=29.59 Aligned_cols=30 Identities=23% Similarity=0.219 Sum_probs=21.7
Q ss_pred CCeeEEEEeccccccccC--CChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVG--NLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~--~~~~~i~~i~~~ 67 (178)
..-.++|+||||.++... .+.+.+..+++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~ 292 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKR 292 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHH
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHH
Confidence 446799999999999632 245667777766
No 215
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=52.14 E-value=17 Score=24.09 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=11.8
Q ss_pred CchHHHHHHHHhhhCCCceEe
Q 030396 147 SKDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 147 t~~~~~~l~~~L~~~g~~~~~ 167 (178)
|..+++.|...|...||.+..
T Consensus 39 t~~D~~~L~~~f~~LgF~V~~ 59 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVRN 59 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 334556666666666665443
No 216
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=52.07 E-value=17 Score=27.21 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=27.2
Q ss_pred CEEEEeCC-----------chHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 140 PVLIFVQS-----------KDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 140 ~~lIF~~t-----------~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
-+|||+|. ..+++.|++.|+..||.+..+ .+++.
T Consensus 62 ~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~-~dlt~ 106 (302)
T 3e4c_A 62 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVK-KNLTA 106 (302)
T ss_dssp EEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCH
T ss_pred EEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEe-eCCCH
Confidence 48999988 679999999999999987644 34443
No 217
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=52.07 E-value=39 Score=27.17 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=43.5
Q ss_pred EEEcCChhhHHH-HHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCCccc
Q 030396 116 LVFAGSEEGKLL-ALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLSQTQ 176 (178)
Q Consensus 116 ~~~~~~~~~k~~-~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~ 176 (178)
++..+....|.. +++-.+.. .+++||.+++++-++...+.|...|+++..++|+.+..+
T Consensus 44 lv~apTGsGKTl~~~lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~ 103 (523)
T 1oyw_A 44 LVVMPTGGGKSLCYQIPALLL--NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQ 103 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHHS--SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred EEECCCCcHHHHHHHHHHHHh--CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 445555555643 22223322 467999999999999999999999999999999987543
No 218
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=51.93 E-value=22 Score=24.85 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCeeEEEEeccccccccC-CChhhHHHHHhhCCCCCceEEEEeecCcHHHHHH
Q 030396 38 SRVEYLVLDEADKLFEVG-NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEEL 89 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~-~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~ 89 (178)
...+++|+||+-..+..+ --.+++..++.. -+...-+|+.+--.|+++.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHh
Confidence 567899999998776655 123445555555 455555555555555555554
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=50.70 E-value=14 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=22.9
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
..+++||+|.+-... ...+...+.. .+.+.++++ +++.+
T Consensus 78 g~l~ldei~~l~~~~--q~~Ll~~l~~-~~~~~~~I~-~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTREQ--QYHLVQLQSQ-EHRPFRLIG-IGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHHH--HHHHHHHHHS-SSCSSCEEE-EESSC
T ss_pred cEEEEcChHHCCHHH--HHHHHHHHhh-cCCCEEEEE-ECCcC
Confidence 478999999985433 4445555544 444555444 44444
No 220
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.64 E-value=14 Score=28.22 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=30.0
Q ss_pred CC-eeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SR-VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~-l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
.. ..++++||...-++.. ....+...+.. +....|+++.|
T Consensus 303 ~~~~~~lllDEp~~~LD~~-~~~~l~~~l~~-~~~~~~vi~~t 343 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDEN-RRAKLAEIFRK-VKSIPQMIIIT 343 (371)
T ss_dssp SSCCSEEEEESTTTTCCHH-HHHHHHHHHHH-CCSCSEEEEEE
T ss_pred cCCCCeEEEeCCCCcCCHH-HHHHHHHHHHH-hccCCeEEEEE
Confidence 34 6899999999988877 67778888877 55556755544
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=50.63 E-value=9 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=11.3
Q ss_pred eEEEEeccccccc
Q 030396 41 EYLVLDEADKLFE 53 (178)
Q Consensus 41 ~~lViDE~d~ll~ 53 (178)
..+++||+|.+..
T Consensus 112 ~vl~iDEid~l~~ 124 (285)
T 3h4m_A 112 SIIFIDEIDAIAA 124 (285)
T ss_dssp EEEEEETTHHHHB
T ss_pred eEEEEECHHHhcc
Confidence 6899999999963
No 222
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=50.47 E-value=25 Score=28.83 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=27.0
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
....+++|+||++.+- .+.+..+++. .+...+++++.
T Consensus 277 ~~~~dvlIIDEasml~-----~~~~~~Ll~~-~~~~~~lilvG 313 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMG-----DALMLSLLAA-VPPGARVLLVG 313 (574)
T ss_dssp CCSCSEEEECCGGGCC-----HHHHHHHHTT-SCTTCEEEEEE
T ss_pred cccCCEEEEcCccCCC-----HHHHHHHHHh-CcCCCEEEEEe
Confidence 3467899999999872 4567777887 66677777663
No 223
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=50.46 E-value=7.3 Score=26.31 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=25.4
Q ss_pred CCCEEE--EeC-CchHHHHHHHHhhh----------CCC-ceEeeecCCC
Q 030396 138 NPPVLI--FVQ-SKDRAKELYGELAF----------DDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lI--F~~-t~~~~~~l~~~L~~----------~g~-~~~~lh~~~~ 173 (178)
.++++| +|+ +-.++...+..|.+ .|+ ++..+.||+.
T Consensus 89 ~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~ 138 (175)
T 2a2k_A 89 DKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYK 138 (175)
T ss_dssp -CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHH
T ss_pred CCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHH
Confidence 345544 487 77777788887764 588 7889988864
No 224
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.16 E-value=13 Score=27.89 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.7
Q ss_pred eeEEEEecccccccc
Q 030396 40 VEYLVLDEADKLFEV 54 (178)
Q Consensus 40 l~~lViDE~d~ll~~ 54 (178)
...+|+||+|.+...
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 568999999999854
No 225
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=50.08 E-value=82 Score=23.97 Aligned_cols=149 Identities=11% Similarity=0.020 Sum_probs=76.7
Q ss_pred hccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccccccC--CCh-hhHHHH----HhhCCCCCceEEEEeecCc
Q 030396 11 LSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG--NLL-KHIDPV----VKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~ll~~~--~~~-~~i~~i----~~~~~~~~~q~i~~SAT~~ 83 (178)
+..+++++||++...+.+.+..-.-...++.++++|..-..-+-. .+. .+-..+ ... +.....+-++.+.-.
T Consensus 82 l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~-~tk~~kIGfVgg~~~ 160 (356)
T 3s99_A 82 IARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAK-MSKKGIAGYIGSVPV 160 (356)
T ss_dssp HHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHH-HCSSCEEEEEECCCC
T ss_pred HHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHH-hcCCCEEEEECCCcc
Confidence 344789999999877776664422234577888888632110000 010 111111 123 334455566666544
Q ss_pred HHHHHHHHHhccCcEEEEEcCCccccCCceEEEEEcCC---hhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh
Q 030396 84 DFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS---EEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~~~---~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
+.+......|..... ...+.++-.+.+..+ ..+-......++++ +..+||+.+... -+.+..++
T Consensus 161 p~v~~~~~GF~~G~k--------~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~---G~DvIf~~~d~~--Gv~~aa~e 227 (356)
T 3s99_A 161 PEVVQGINSFMLGAQ--------SVNPDFRVKVIWVNSWFDPGKEADAAKALIDQ---GVDIITQHTDST--AAIQVAHD 227 (356)
T ss_dssp HHHHHHHHHHHHHHH--------TTCTTCEEEEEECSSSCCHHHHHHHHHHHHHT---TCSEEEESSSSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHCCCCEEEEEECCCCCChHHHHHHHHHHHhC---CCcEEEECCCch--HHHHHHHH
Confidence 555555555533110 001122222333332 22233455556654 356888865543 45566678
Q ss_pred CCCceEeeecCCC
Q 030396 161 DDIRAGVIHSDLS 173 (178)
Q Consensus 161 ~g~~~~~lh~~~~ 173 (178)
.|..+.-+.+++.
T Consensus 228 ~Gv~vIG~D~dq~ 240 (356)
T 3s99_A 228 RGIKAFGQASDMI 240 (356)
T ss_dssp TTCEEEEEESCCG
T ss_pred cCCEEEEEcCchh
Confidence 8888887777654
No 226
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=49.72 E-value=32 Score=29.82 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHhcCCCCEEEEeCCchHHHHHHHHhh----hCCCceEeeecCCCcccc
Q 030396 133 FAESLNPPVLIFVQSKDRAKELYGELA----FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 133 l~~~~~~~~lIF~~t~~~~~~l~~~L~----~~g~~~~~lh~~~~~~~R 177 (178)
++.....+++|.|.|+.-|...++.+. ..|+++.++.||++..+|
T Consensus 119 l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r 167 (844)
T 1tf5_A 119 LNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK 167 (844)
T ss_dssp HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Confidence 355556789999999999998887774 469999999999987654
No 227
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=49.34 E-value=32 Score=25.60 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=21.9
Q ss_pred CCeeEEEEeccccccccCCChh-hHHHHHhhCCCCCceEEEEeecCcH
Q 030396 38 SRVEYLVLDEADKLFEVGNLLK-HIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~-~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
.+.+++|+||++..-....... .+..++.........++ +|+..++
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~I-itSN~~~ 259 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTF-FTSNYSF 259 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEE-EEESSCH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEE-EECCCCH
Confidence 4567999999976422210122 34445554122344544 4455543
No 228
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=49.26 E-value=6.5 Score=27.99 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=25.4
Q ss_pred EEEEeC-CchHHHHHHHHhhhC----------CC-ceEeeecCCC
Q 030396 141 VLIFVQ-SKDRAKELYGELAFD----------DI-RAGVIHSDLS 173 (178)
Q Consensus 141 ~lIF~~-t~~~~~~l~~~L~~~----------g~-~~~~lh~~~~ 173 (178)
++++|. +-.++...+..|... || ++..+.||+.
T Consensus 127 VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~ 171 (216)
T 3op3_A 127 IVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYR 171 (216)
T ss_dssp EEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHH
Confidence 889999 888888888888765 77 6889999864
No 229
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=48.40 E-value=18 Score=32.39 Aligned_cols=43 Identities=33% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeee
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
+..|.+.++.... +++|.|.|..+++.+.+.|.+.|+++..+|
T Consensus 374 ~~~L~~~~~~~~g-rVli~~~s~~~~erL~~~L~e~gi~~~~~~ 416 (1151)
T 2eyq_A 374 LDALRKFLETFDG-PVVFSVESEGRREALGELLARIKIAPQRIM 416 (1151)
T ss_dssp THHHHHHHTTCCS-CCCEEESSHHHHHHHHHHHGGGTCCCEECS
T ss_pred HHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCceecc
Confidence 4566667665433 999999999999999999999999875555
No 230
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=47.89 E-value=21 Score=25.08 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=36.6
Q ss_pred EEEcCChhhHHHH-HHHHHHhc----CCCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCCCc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAES----LNPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~~~ 174 (178)
++..+....|... +.-++... ...+++|.++|++-+...++.+... +..+..++|+.+.
T Consensus 71 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 138 (237)
T 3bor_A 71 IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV 138 (237)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCch
Confidence 3334444455433 44444332 3568999999999999988888653 5788888887654
No 231
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.57 E-value=58 Score=23.67 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=39.9
Q ss_pred EEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcc
Q 030396 116 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQT 175 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~ 175 (178)
++..+....|.......+... ..+++|.|+++.-+...++.+.+ .+.++..++|+.+..
T Consensus 35 lv~~~TGsGKT~~~~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (337)
T 2z0m_A 35 VVRAKTGSGKTAAYAIPILEL-GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYK 97 (337)
T ss_dssp EEECCTTSSHHHHHHHHHHHH-TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHH
T ss_pred EEEcCCCCcHHHHHHHHHHhh-cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchH
Confidence 344444445544333222222 57899999999999998888864 367899999987653
No 232
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=47.50 E-value=9.3 Score=29.54 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=30.1
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
.++++||.+.=++.. ....+..+++. +....|+++.|..
T Consensus 317 ~~LlLDEpt~~LD~~-~~~~l~~~L~~-l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGA-AAIAVAEQLSR-LADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHH-HHHHHHHHHHH-HTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHH-HHHHHHHHHHH-HhCCCEEEEEeCc
Confidence 899999999988887 67777777777 4456777776543
No 233
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=46.74 E-value=59 Score=23.03 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=23.0
Q ss_pred cEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccccc
Q 030396 17 DILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 51 (178)
Q Consensus 17 ~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~l 51 (178)
.+-+.++..+++.+..... -.+.+++|+||+..+
T Consensus 68 ~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp CEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred ccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 3456677777777765322 245689999999875
No 234
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.27 E-value=26 Score=26.40 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=40.1
Q ss_pred EEEcCChhhHHHH-HHHHHHh----cCCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAE----SLNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
++..+....|... +.-++.. ....+++|.|+++.-+...++.+.. .|+++..++|+.+.
T Consensus 62 lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 129 (394)
T 1fuu_A 62 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSF 129 (394)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCH
T ss_pred EEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCch
Confidence 3444455556543 3333332 2356899999999999988887754 47899999998764
No 235
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.18 E-value=17 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=22.8
Q ss_pred EEEEeccccccccCCChhh-HHHHHhhCCCCCceEEEEee
Q 030396 42 YLVLDEADKLFEVGNLLKH-IDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 42 ~lViDE~d~ll~~~~~~~~-i~~i~~~~~~~~~q~i~~SA 80 (178)
.+|+||+|.+.... .... +..+++. . .+..+++.|.
T Consensus 136 vlilDEi~~l~~~~-~~~~~l~~l~~~-~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRR-GGDIVLYQLLRS-D-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHST-TSHHHHHHHHTS-S-SCEEEEEECS
T ss_pred EEEEECHHHhccCC-CCceeHHHHhcC-C-cceEEEEEEC
Confidence 99999999997653 2445 6666665 3 4444444443
No 236
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=44.81 E-value=18 Score=23.89 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=29.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
.+.+++++||.-.-++.. ....+..++..+......+++.|-
T Consensus 80 ~~p~lllLDEPt~~LD~~-~~~~l~~~l~~~~~~~~tiiivsH 121 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEE-RRRKLITIMERYLKKIPQVILVSH 121 (148)
T ss_dssp SSCSEEEEESCSCTTCHH-HHHHHHHHHHHTGGGSSEEEEEES
T ss_pred CCCCEEEEECCCccCCHH-HHHHHHHHHHHHHccCCEEEEEEC
Confidence 456899999999888877 677788888773233455555443
No 237
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=44.49 E-value=32 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=24.3
Q ss_pred CCEEEEeCC--------------chHHHHHHHHhhhCCCceEeeecCCC
Q 030396 139 PPVLIFVQS--------------KDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 139 ~~~lIF~~t--------------~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
+-+|||+|. ..+++.|...|...||.+..+. +++
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~-dlt 92 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN-DLK 92 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE-SCC
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe-CCC
Confidence 448888774 3678888888888888876553 444
No 238
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=44.43 E-value=46 Score=22.53 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=21.4
Q ss_pred CeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 39 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
..+++++||++.+ +.+ ..+.+..+.. .+..+++..-
T Consensus 76 ~~dvviIDE~Q~~-~~~-~~~~l~~l~~----~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPS-LFEVVKDLLD----RGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGS-CTT-HHHHHHHHHH----TTCEEEEEEE
T ss_pred CCCEEEEECcccC-CHH-HHHHHHHHHH----CCCCEEEEee
Confidence 5789999999986 223 3444444443 3555554433
No 239
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=44.30 E-value=9.3 Score=31.75 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=29.3
Q ss_pred CCEEEEeCCchHHHHH-HHHhhhCC---CceEeeecCCCcccc
Q 030396 139 PPVLIFVQSKDRAKEL-YGELAFDD---IRAGVIHSDLSQTQV 177 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l-~~~L~~~g---~~~~~lh~~~~~~~R 177 (178)
.++||.++++.-+... ++.|...+ +.+..++|+.+..++
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~ 99 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKIS 99 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhH
Confidence 7899999999999888 88886653 899999999877653
No 240
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=44.24 E-value=60 Score=21.48 Aligned_cols=35 Identities=23% Similarity=0.122 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCchHHHHHHHHh
Q 030396 124 GKLLALRQSFAE--SLNPPVLIFVQSKDRAKELYGEL 158 (178)
Q Consensus 124 ~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L 158 (178)
.+....+.++.+ ....+++|.|.+.++++.|-+.|
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~L 59 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEAL 59 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH
Confidence 367777778764 24689999999999999999988
No 241
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=44.16 E-value=5.9 Score=30.05 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=11.3
Q ss_pred CeeEEEEeccccc
Q 030396 39 RVEYLVLDEADKL 51 (178)
Q Consensus 39 ~l~~lViDE~d~l 51 (178)
....+++||+|.+
T Consensus 125 ~~~vlilDE~~~l 137 (389)
T 1fnn_A 125 LYMFLVLDDAFNL 137 (389)
T ss_dssp CCEEEEEETGGGS
T ss_pred CeEEEEEECcccc
Confidence 4569999999999
No 242
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=43.14 E-value=39 Score=25.10 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=12.0
Q ss_pred eeEEEEeccccccc
Q 030396 40 VEYLVLDEADKLFE 53 (178)
Q Consensus 40 l~~lViDE~d~ll~ 53 (178)
...++|||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 37999999999965
No 243
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.06 E-value=16 Score=27.40 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
...+++++||...-++.. ....+..+++. +....|+++.|-.
T Consensus 240 ~~~~~lllDEp~~~LD~~-~~~~l~~~l~~-~~~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDY-NAERFKRLLKE-NSKHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHH-HHHHHHHHHHH-HTTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHHHHH-hcCCCeEEEEECC
Confidence 456799999999988877 67777777777 4445676665544
No 244
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=42.91 E-value=9.9 Score=26.53 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCCcEEEeCcHHHHHHH-Hc----------------CCCCCCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEE
Q 030396 14 FSCDILISTPLRLRLAI-RR----------------KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS 76 (178)
Q Consensus 14 ~~~~Iii~TP~~l~~~l-~~----------------~~~~~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i 76 (178)
.|-+|.|-+|..-...- .. ....+..=+.+|+|||..|-. .++..++......+.|++
T Consensus 79 ~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~-----kE~~~Lld~A~~~naqvv 153 (189)
T 2l8b_A 79 QGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSL-----KETLTLLDGAARHNVQVL 153 (189)
T ss_dssp TTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSCCCCCCCEEEEEESSSHHH-----HHHHHHHHHHHHTTCCEE
T ss_pred cCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCCCCCCCCEEEEechhhcCH-----HHHHHHHHHHHhcCCEEE
Confidence 56788888887755332 11 111134556899999999943 445555554344578888
Q ss_pred EEeec
Q 030396 77 LFSAT 81 (178)
Q Consensus 77 ~~SAT 81 (178)
++--+
T Consensus 154 ll~~~ 158 (189)
T 2l8b_A 154 ITDSG 158 (189)
T ss_dssp EEESS
T ss_pred EeCCc
Confidence 87444
No 245
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=42.82 E-value=88 Score=22.20 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeC-----CchHHHHHHHHhhhCCCceEeeecC
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQ-----SKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~-----t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
+|+....++.......+++||+| |.++...+.++....++++..+-.+
T Consensus 147 e~i~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~ 199 (220)
T 3s5u_A 147 EKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 56666666777888999999998 6789999999999999888887665
No 246
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=42.37 E-value=17 Score=31.19 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=33.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~~R 177 (178)
..+++|.++|+.-|...++.+.+ .|+++..+||+++..+|
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r 460 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEK 460 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHH
Confidence 47899999999998888777654 48999999999986553
No 247
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=42.17 E-value=41 Score=29.16 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=41.2
Q ss_pred EcCChhhH-HHHHHHHH-HhcCCCCEEEEeCCchHHHHHHHHhh----hCCCceEeeecCCCcccc
Q 030396 118 FAGSEEGK-LLALRQSF-AESLNPPVLIFVQSKDRAKELYGELA----FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 118 ~~~~~~~k-~~~l~~ll-~~~~~~~~lIF~~t~~~~~~l~~~L~----~~g~~~~~lh~~~~~~~R 177 (178)
.....+.| ...++-++ ......+++|-|+|+.-|...++.+. ..|+++..+.||++..+|
T Consensus 93 em~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r 158 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK 158 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Confidence 34344444 33333333 44456789999999999988777664 469999999999986543
No 248
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=41.75 E-value=53 Score=24.22 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=31.3
Q ss_pred cCCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 136 SLNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 136 ~~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
....+++|.|+++.-+...++.+.. .++.+..++|+.+.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAI 114 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCH
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcch
Confidence 3467899999999999988888865 46788888888653
No 249
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=41.66 E-value=22 Score=22.86 Aligned_cols=39 Identities=5% Similarity=-0.090 Sum_probs=22.0
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeec
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 81 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT 81 (178)
..+++||+|.+-... ...+..++..-.+.+..+++.|..
T Consensus 77 ~~l~lDei~~l~~~~--q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 77 GVLYVGDIAQYSRNI--QTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp SEEEEEECTTCCHHH--HHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CeEEEeChHHCCHHH--HHHHHHHHHhCCCCCEEEEEecCC
Confidence 589999999985433 333444444312344565554443
No 250
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=41.60 E-value=38 Score=24.38 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 123 EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
..-...+.+++... ..+..|||.+...|.-+...|++.|+.
T Consensus 172 ~~~~~~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 172 PGGYLAASRLLALE-VPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHHSS-SCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 34456677777764 678899999999999999999999874
No 251
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=41.60 E-value=47 Score=24.41 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=23.9
Q ss_pred eeEEEEecccccccc--CCChhhHHHHHhhCCCCCceEEEE
Q 030396 40 VEYLVLDEADKLFEV--GNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 40 l~~lViDE~d~ll~~--~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
--.+|+||+|.+... ..+...+..+.+. . .+..+++.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~~ 176 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDN-L-KRIKFIMS 176 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHH-C-TTEEEEEE
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHc-C-CCeEEEEE
Confidence 458899999999752 2366777777665 3 24444443
No 252
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=41.56 E-value=42 Score=29.39 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=36.2
Q ss_pred HHhcCCCCEEEEeCCchHHHHHHHHhh----hCCCceEeeecCCCcccc
Q 030396 133 FAESLNPPVLIFVQSKDRAKELYGELA----FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 133 l~~~~~~~~lIF~~t~~~~~~l~~~L~----~~g~~~~~lh~~~~~~~R 177 (178)
+......+++|-|.|+.-|...++.+. ..|+++.++.||++..+|
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r 195 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER 195 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Confidence 455556789999999999988777764 469999999999987654
No 253
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=41.53 E-value=11 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCcEEE---eCcHHHHHHHHcCCCCCCCeeEEEEeccc
Q 030396 15 SCDILI---STPLRLRLAIRRKKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 15 ~~~Iii---~TP~~l~~~l~~~~~~~~~l~~lViDE~d 49 (178)
.+.|.+ +||..+.+.+....++++++.++-+||-=
T Consensus 46 ~~~l~LsgGsTp~~ly~~L~~~~i~w~~v~~f~~DEr~ 83 (232)
T 1vl1_A 46 KIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERY 83 (232)
T ss_dssp CEEEEECCSTTHHHHHHHHTTSCCCGGGEEEEESEEES
T ss_pred CeEEEEcCCccHHHHHHHHHHcCCChhHEEEEeCeEee
Confidence 345555 36778888887777999999999999964
No 254
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=41.50 E-value=26 Score=25.58 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=8.2
Q ss_pred hHHHHHHHHhhhCCCce
Q 030396 149 DRAKELYGELAFDDIRA 165 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~ 165 (178)
.+++.|++.|+..||.+
T Consensus 44 ~D~~~L~~~f~~LGF~V 60 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEV 60 (259)
T ss_dssp CHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 44444555555555443
No 255
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=41.15 E-value=23 Score=26.13 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=22.0
Q ss_pred eEEEEecccccccc----C-CChhhHHHHHhhCCCCCceEEEE
Q 030396 41 EYLVLDEADKLFEV----G-NLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 41 ~~lViDE~d~ll~~----~-~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
-.+|+||+|.+... . .+...+..+.+. . .+..+++.
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~-~~~~~il~ 170 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-L-PNLKIILT 170 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-C-TTEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHh-c-CCeEEEEE
Confidence 58899999999751 1 245555555555 2 34555544
No 256
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=40.80 E-value=3.5 Score=27.20 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=22.9
Q ss_pred CCCEEEEeCCchHHHHH------HHHhh--hCCC-ceEeeecCCC
Q 030396 138 NPPVLIFVQSKDRAKEL------YGELA--FDDI-RAGVIHSDLS 173 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l------~~~L~--~~g~-~~~~lh~~~~ 173 (178)
..+++|||++-.++... +..|. ..|+ ++..+.||+.
T Consensus 78 ~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~ 122 (153)
T 2vsw_A 78 SQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFA 122 (153)
T ss_dssp TSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred CCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHH
Confidence 56799999775544322 34444 3377 6888888864
No 257
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=40.78 E-value=35 Score=25.15 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=12.2
Q ss_pred hHHHHHHHHhhhCCCceEe
Q 030396 149 DRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~~~ 167 (178)
.+++.|...|+..||.+..
T Consensus 46 ~D~~~L~~~f~~LGF~V~~ 64 (278)
T 3od5_A 46 ADRDNLTRRFSDLGFEVKC 64 (278)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 5666666666666666543
No 258
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=40.51 E-value=61 Score=19.73 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=25.8
Q ss_pred cCCCCEEEEeC------CchHHHHHHHHhhhCCCceEee
Q 030396 136 SLNPPVLIFVQ------SKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 136 ~~~~~~lIF~~------t~~~~~~l~~~L~~~g~~~~~l 168 (178)
....+++||.. ....|......|.+.|++...+
T Consensus 15 i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~ 53 (109)
T 3ipz_A 15 VNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDV 53 (109)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEE
T ss_pred HccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEE
Confidence 34568999997 4889999999999888765544
No 259
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=40.22 E-value=18 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=25.4
Q ss_pred CcEEEeC---cHHHHHHHHc----CCCCCCCeeEEEEecc
Q 030396 16 CDILIST---PLRLRLAIRR----KKIDLSRVEYLVLDEA 48 (178)
Q Consensus 16 ~~Iii~T---P~~l~~~l~~----~~~~~~~l~~lViDE~ 48 (178)
+.|.++| |..+.+.|.. +.++++++.++-+||-
T Consensus 56 ~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~f~~DEr 95 (289)
T 3hn6_A 56 FILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEY 95 (289)
T ss_dssp EEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEE
T ss_pred EEEEECCCccHHHHHHHHHHhHhhcCCCchheEEEeCcce
Confidence 4555554 8778777754 7899999999999993
No 260
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=40.17 E-value=33 Score=23.14 Aligned_cols=20 Identities=10% Similarity=-0.152 Sum_probs=14.4
Q ss_pred chHHHHHHHHhhhCCCceEe
Q 030396 148 KDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 148 ~~~~~~l~~~L~~~g~~~~~ 167 (178)
..+++.|...|...||.+..
T Consensus 54 ~~D~~~L~~~f~~LgF~V~~ 73 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIKP 73 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 56777777777777777644
No 261
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=39.91 E-value=36 Score=25.02 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=13.8
Q ss_pred chHHHHHHHHhhhCCCceEe
Q 030396 148 KDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 148 ~~~~~~l~~~L~~~g~~~~~ 167 (178)
..+++.+++.|+..||.+..
T Consensus 55 ~~Da~~L~~~f~~LGF~V~~ 74 (272)
T 1m72_A 55 NVDSDNLSKVLKTLGFKVTV 74 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 66677777777777776543
No 262
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=39.90 E-value=50 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.++++.....+..|||.+...|.-+...|++.|++
T Consensus 164 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 202 (277)
T 3cs3_A 164 YAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQ 202 (277)
T ss_dssp HHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCC
Confidence 445666666523678999999999999999999999874
No 263
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=39.80 E-value=45 Score=26.22 Aligned_cols=38 Identities=5% Similarity=-0.089 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhcC-CC---CEEEEeCCchHHHHHHHHhhhC
Q 030396 124 GKLLALRQSFAESL-NP---PVLIFVQSKDRAKELYGELAFD 161 (178)
Q Consensus 124 ~k~~~l~~ll~~~~-~~---~~lIF~~t~~~~~~l~~~L~~~ 161 (178)
.-...+.+...... .. .+.|.|.|.+++..+.+.|...
T Consensus 234 ~~~~~i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~~ 275 (459)
T 3upu_A 234 ALRDFMVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRKK 275 (459)
T ss_dssp SHHHHHHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhhceEEEEehHhHHHHHHHHHHHH
Confidence 34555555555322 23 7999999999999999999763
No 264
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=39.52 E-value=66 Score=23.25 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.-...+.+++...+..+..|||.+...|.-+...|.+.|++
T Consensus 173 ~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 173 NALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 34566777887765678899999999999999999999873
No 265
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=39.24 E-value=42 Score=24.70 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=38.7
Q ss_pred EEEcCChhhHH-HHHHHHHHh----cCCCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCcc
Q 030396 116 LVFAGSEEGKL-LALRQSFAE----SLNPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQT 175 (178)
Q Consensus 116 ~~~~~~~~~k~-~~l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~~ 175 (178)
++..+....|. .+++-++.. ....++||.++|++-|..++..+... ++.+....|+....
T Consensus 135 l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~ 204 (300)
T 3fmo_B 135 IAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204 (300)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCC
T ss_pred EEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHh
Confidence 33444444554 334455543 22447999999999999987777542 56788888776543
No 266
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.23 E-value=64 Score=23.17 Aligned_cols=42 Identities=14% Similarity=-0.071 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhcC--CCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 123 EGKLLALRQSFAESL--NPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~--~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
..-...+.+++...+ ..+..|||.+...|.-+...|.+.|+.
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 217 (295)
T 3hcw_A 174 EVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp HHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 334556677777653 468999999999999999999999874
No 267
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=38.99 E-value=84 Score=22.49 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeC-----CchHHHHHHHHhhhCCCceEeeecC
Q 030396 123 EGKLLALRQSFAESLNPPVLIFVQ-----SKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~~-----t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
-+|+...+++.......+++||+| |.++...+.++....++++..+-..
T Consensus 146 ~eki~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 146 FEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 356667777777888999999998 6788999999988888887776554
No 268
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=38.86 E-value=17 Score=28.35 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
....++++||.+.-++.. ....+..+++.+.....|+++.|.
T Consensus 354 ~~~~~lllDEp~~~LD~~-~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDIT-NVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp SCCSEEEESSTTTTCCHH-HHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCCEEEeCCCcccCCHH-HHHHHHHHHHHHhcCCCEEEEEEC
Confidence 466799999999998887 666677777662223578776653
No 269
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=38.48 E-value=32 Score=24.31 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=7.9
Q ss_pred eeEEEEeccccccc
Q 030396 40 VEYLVLDEADKLFE 53 (178)
Q Consensus 40 l~~lViDE~d~ll~ 53 (178)
...+++||+|.+..
T Consensus 99 ~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 99 PCIVYIDEIDAVGK 112 (262)
T ss_dssp SEEEEEECC-----
T ss_pred CeEEEEeCcchhhc
Confidence 46899999999953
No 270
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=37.96 E-value=76 Score=24.00 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcc
Q 030396 139 PPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQT 175 (178)
Q Consensus 139 ~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~ 175 (178)
.+++|.++|++-|...++.+.. .++++..++|+.+..
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 142 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 142 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHH
Confidence 5799999999999998888754 478899999987643
No 271
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=37.16 E-value=12 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCcEEEe---CcHHHHHHHHc--CCCCCCCeeEEEEeccc
Q 030396 14 FSCDILIS---TPLRLRLAIRR--KKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 14 ~~~~Iii~---TP~~l~~~l~~--~~~~~~~l~~lViDE~d 49 (178)
+.+.+.++ ||..+.+.|.. +.++++++.++-+||--
T Consensus 39 ~~~~l~LsgGstP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (251)
T 3tx2_A 39 GKAMIVLTGGGTGIALLKHLRDVASGLDWTNVHVFWGDDRY 79 (251)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHHTTSCGGGEEEEESEEES
T ss_pred CCEEEEECCCchHHHHHHHHHhhccCCCCceeEEEeeeecc
Confidence 44555554 45567777766 88999999999999974
No 272
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=37.08 E-value=64 Score=19.84 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=24.9
Q ss_pred cCCCCEEEEe------CCchHHHHHHHHhhhCCCceEee
Q 030396 136 SLNPPVLIFV------QSKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 136 ~~~~~~lIF~------~t~~~~~~l~~~L~~~g~~~~~l 168 (178)
....+++||. ++...|......|.+.|++...+
T Consensus 13 i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~ 51 (111)
T 3zyw_A 13 THAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF 51 (111)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEE
T ss_pred HhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEE
Confidence 3456889998 57788888888898888765444
No 273
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=36.78 E-value=35 Score=25.90 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.4
Q ss_pred CeeEEEEeccccccc
Q 030396 39 RVEYLVLDEADKLFE 53 (178)
Q Consensus 39 ~l~~lViDE~d~ll~ 53 (178)
....++|||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 457999999999864
No 274
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=36.43 E-value=60 Score=28.65 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=35.9
Q ss_pred HHhcCCCCEEEEeCCchHHHHHHHHh----hhCCCceEeeecCCCcccc
Q 030396 133 FAESLNPPVLIFVQSKDRAKELYGEL----AFDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 133 l~~~~~~~~lIF~~t~~~~~~l~~~L----~~~g~~~~~lh~~~~~~~R 177 (178)
+......+++|-+.|+.-|...++.+ ...|+++..+.|+++..+|
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r 163 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER 163 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Confidence 45555678999999999888877766 4569999999999986654
No 275
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.32 E-value=44 Score=24.06 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 127 LALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 127 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
..+.+++... ..+.-|||.+...|.-+...|.+.|+.
T Consensus 186 ~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 186 AAATEMLKQD-DRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHTST-TCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 4566667544 578899999999999999999999874
No 276
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=35.92 E-value=57 Score=23.19 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 123 EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
..-...+.+++... ..+..|||.+...|.-+...|++.|+.
T Consensus 177 ~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 177 ESGQQAVEELMGLQ-QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHHTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCC-CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 33456677777665 577889999999999999999998864
No 277
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=35.70 E-value=45 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=20.6
Q ss_pred CEEEEeCC-------------chHHHHHHHHhhhCCCceEee
Q 030396 140 PVLIFVQS-------------KDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 140 ~~lIF~~t-------------~~~~~~l~~~L~~~g~~~~~l 168 (178)
-+|||.|. ..+++.|+..|+..||.+..+
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~ 103 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF 103 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 47777664 677788888888888876543
No 278
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=35.37 E-value=51 Score=23.34 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++.. ...+..|||.+...|.-+...|.+.|++
T Consensus 168 ~~~~~~~~l~~-~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 168 VHQRLTQLITQ-NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHHHHHS-SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred HHHHHHHHHhc-CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 45556666644 3678999999999999999999999874
No 279
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.07 E-value=55 Score=24.44 Aligned_cols=39 Identities=5% Similarity=-0.064 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+..++... ..++-|||.+...|--+...|.+.|+.
T Consensus 255 ~~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~G~~ 293 (366)
T 3h5t_A 255 NFEVAKELLETH-PDLTAVLCTVDALAFGVLEYLKSVGKS 293 (366)
T ss_dssp HHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 345666777665 578999999999999999999999874
No 280
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=34.99 E-value=10 Score=15.72 Aligned_cols=10 Identities=10% Similarity=0.384 Sum_probs=6.9
Q ss_pred CEEEEeCCch
Q 030396 140 PVLIFVQSKD 149 (178)
Q Consensus 140 ~~lIF~~t~~ 149 (178)
--|||||.+.
T Consensus 6 vpiiycnrrt 15 (21)
T 8tfv_A 6 VPIIYCNRRT 15 (26)
T ss_dssp CCCEEEEGGG
T ss_pred ccEEEEcCcc
Confidence 3578998653
No 281
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=34.83 E-value=41 Score=23.71 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCcc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQT 175 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~~ 175 (178)
..++||.|+|++-+...++.+.. .++.+..++|+.+..
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 141 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 141 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHH
Confidence 35899999999999998887754 367888899887643
No 282
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=34.79 E-value=61 Score=23.18 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+.-|||.+...|.-+...|.+.|+.
T Consensus 172 ~~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 210 (289)
T 3k9c_A 172 GAEGMHTLLEMP-TPPTAVVAFNDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp HHHHHHHHHTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 345666677654 678899999999999999999998864
No 283
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.69 E-value=56 Score=23.36 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.++++.. ..+..|||.+...|.-+...|.+.|++
T Consensus 175 ~~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 175 IRDFGQRLMQSS-DRPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHHTTSS-SCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCC-CCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 345666677654 567899999999999999999999864
No 284
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=34.67 E-value=53 Score=21.65 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecC
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSD 171 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~ 171 (178)
...+..+++..+.+..++.+.+....+.+.+.|.+.|+....+...
T Consensus 104 ~~~~~~~~~~lpgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 104 REVIDRFVDAVTVGMLYLLVIEANRPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp CHHHHHHHHHCCSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEee
Confidence 3455555554455667677788889999999999999977666543
No 285
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=34.67 E-value=52 Score=23.45 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCC-CEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNP-PVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~-~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.++++..+.. +..|||.+...|.-+...|.+.|++
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 56778888877433 8899999999999999999999874
No 286
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=34.57 E-value=36 Score=25.50 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=11.5
Q ss_pred eEEEEecccccccc
Q 030396 41 EYLVLDEADKLFEV 54 (178)
Q Consensus 41 ~~lViDE~d~ll~~ 54 (178)
..++|||+|.+...
T Consensus 191 ~vl~IDEi~~l~~~ 204 (368)
T 3uk6_A 191 GVLFIDEVHMLDIE 204 (368)
T ss_dssp CEEEEESGGGSBHH
T ss_pred ceEEEhhccccChH
Confidence 49999999999543
No 287
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=34.34 E-value=55 Score=23.28 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.-...+.+++... ..+..|||.+...|.-+...|.+.|+.
T Consensus 174 ~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 174 GGVDAAKKLMKLK-NTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHHTTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCC-CCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 3455666677654 567899999999999999999999864
No 288
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=34.31 E-value=28 Score=27.95 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=26.6
Q ss_pred eeEEEEeccccccccC---------CChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 40 VEYLVLDEADKLFEVG---------NLLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 40 l~~lViDE~d~ll~~~---------~~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...++|||+|.+.... .....+...++. ......++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~-~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-LKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-SCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhc-cccCCceEEEEecCCc
Confidence 3589999999997532 012334444554 3445556677677654
No 289
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=34.06 E-value=57 Score=23.98 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+..|||.+...|--+...|.+.|+.
T Consensus 229 ~~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 229 GAEGVEMLLERG-AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHHHTT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC-CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 345666677654 678999999999999999999998864
No 290
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.01 E-value=66 Score=23.72 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 123 EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
..-...+.+++...+ +.-|||.+...|--+...|.+.|+.
T Consensus 217 ~~~~~~~~~ll~~~~--~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 217 ESGEEMAQVVFNNGL--PDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHHHHHTCC--CSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCC--CcEEEECCHHHHHHHHHHHHHcCCC
Confidence 334566777777764 8999999999999999999998874
No 291
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.96 E-value=60 Score=24.00 Aligned_cols=39 Identities=10% Similarity=-0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+.-|||.+...|--+...|.+.|++
T Consensus 234 ~~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 234 GREMTQAMLERS-PDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHHHHS-TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcC-CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 345667777765 568899999999999999999998874
No 292
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=33.96 E-value=74 Score=22.92 Aligned_cols=39 Identities=3% Similarity=0.039 Sum_probs=30.7
Q ss_pred HHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ...+..|||.+...|.-+...|++.|++
T Consensus 176 ~~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 216 (306)
T 2vk2_A 176 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 216 (306)
T ss_dssp HHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCC
Confidence 45566777664 2567899999999999999999999874
No 293
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=33.86 E-value=60 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+.-|||.+...|--+...|.+.|+.
T Consensus 226 ~~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 226 GADMLDRALAER-PDCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp HHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC-CCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 345666777765 567899999999999999999998864
No 294
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=33.85 E-value=17 Score=26.08 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.8
Q ss_pred eeEEEEeccccccc
Q 030396 40 VEYLVLDEADKLFE 53 (178)
Q Consensus 40 l~~lViDE~d~ll~ 53 (178)
...+++||+|.+..
T Consensus 104 ~~vl~iDEid~l~~ 117 (268)
T 2r62_A 104 PSIIFIDEIDAIGK 117 (268)
T ss_dssp SCEEEESCGGGTTC
T ss_pred CeEEEEeChhhhcc
Confidence 37899999999964
No 295
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=33.82 E-value=29 Score=23.48 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=21.6
Q ss_pred CeeEEEEeccccccccCCChh-hHHHHHhhCCCCCceEEEEeecCcH
Q 030396 39 RVEYLVLDEADKLFEVGNLLK-HIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~~~~~~-~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
...++|+||++..-....... .+..++........++++ ++..++
T Consensus 115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~-tsn~~~ 160 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFF-TSNFDM 160 (202)
T ss_dssp HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEE-EESSCH
T ss_pred CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEE-EcCCCH
Confidence 346999999977532221122 344455441223445444 444443
No 296
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=33.66 E-value=75 Score=22.30 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...|.+.|++
T Consensus 169 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (275)
T 3d8u_A 169 AEGLAKLLLRD-SSLNALVCSHEEIAIGALFECHRRVLK 206 (275)
T ss_dssp HHHHHHHHTTC-TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-CCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 45566677654 567899999999999999999998864
No 297
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=33.54 E-value=11 Score=27.73 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCcEEEe---CcHHHHHHHHc--CCCCCCCeeEEEEeccc
Q 030396 14 FSCDILIS---TPLRLRLAIRR--KKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 14 ~~~~Iii~---TP~~l~~~l~~--~~~~~~~l~~lViDE~d 49 (178)
+.+.|.++ ||..+.+.|.+ +.++++++.++-+||-=
T Consensus 55 ~~~~l~LsgGstP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 95 (268)
T 3ico_A 55 GQALIVLTGGGNGIALLRYLSAQAQQIEWSKVHLFWGDERY 95 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHGGGSCGGGEEEEESEEEC
T ss_pred CceEEEEecCCchhHHHHHHHHHhhhhhheeeEEeeccccc
Confidence 44556665 46667777766 78999999999999974
No 298
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=33.54 E-value=43 Score=24.72 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=13.0
Q ss_pred chHHHHHHHHhhhCCCceEe
Q 030396 148 KDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 148 ~~~~~~l~~~L~~~g~~~~~ 167 (178)
..+++.|+..|+..||.+..
T Consensus 68 ~~D~~~L~~~f~~LGF~V~~ 87 (277)
T 4ehd_A 68 DVDAANLRETFRNLKYEVRN 87 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 34677777777777776543
No 299
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=33.10 E-value=47 Score=26.28 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCeeEEEEecccccc--ccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhc
Q 030396 38 SRVEYLVLDEADKLF--EVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 94 (178)
Q Consensus 38 ~~l~~lViDE~d~ll--~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 94 (178)
...+++|+|++-.+- .+..+..++..+.+. ..+..-+++++|+...+....+..|-
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV-LKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHh-hCCcceEEEEeCccchHHHHHHHHHh
Confidence 366899999998764 333366777777777 55566667788888766556555554
No 300
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=32.99 E-value=78 Score=24.52 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
..++||.++|++-|...++.+.+ .++++..++|+.+.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 169 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSF 169 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCH
Confidence 45899999999999999887765 35788999998764
No 301
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.92 E-value=63 Score=23.08 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.++++.. ..+..|||.+...|.-+...|++.|++
T Consensus 176 ~~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~G~~ 214 (290)
T 2rgy_A 176 GYAATCQLLESK-APFTGLFCANDTMAVSALARFQQLGIS 214 (290)
T ss_dssp HHHHHHHHHHHT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 345566777664 567889999999999999999998864
No 302
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=32.92 E-value=42 Score=25.27 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=26.9
Q ss_pred CCCEEEEeCCc------------hHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 138 NPPVLIFVQSK------------DRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~------------~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.+-+|||+|.. .+++.|+..|+..||.+. .+.+++.
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~ 108 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQ 108 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCH
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCH
Confidence 34588888763 889999999999999875 4455554
No 303
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=32.91 E-value=56 Score=19.02 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=30.6
Q ss_pred EEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 116 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
++.+.+...-...+...+..... .++.+.+..++.. .+....+.+..+.-.++
T Consensus 4 iliv~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~~~---~l~~~~~dlii~d~~~~ 56 (119)
T 2j48_A 4 ILLLEEEDEAATVVCEMLTAAGF--KVIWLVDGSTALD---QLDLLQPIVILMAWPPP 56 (119)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTC--EEEEESCHHHHHH---HHHHHCCSEEEEECSTT
T ss_pred EEEEeCCHHHHHHHHHHHHhCCc--EEEEecCHHHHHH---HHHhcCCCEEEEecCCC
Confidence 33455555566677777776532 4455666555544 33445677777766654
No 304
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=32.68 E-value=17 Score=23.38 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=17.3
Q ss_pred EeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 144 FVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 144 F~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
||.++++|..+..+|...|++...+.=++.
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feEidI~~d 41 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEEKDIAAN 41 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CccchHHHHHHHHHHHHCCCceEEEECCCC
Confidence 345556666666666666665554444433
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=32.65 E-value=86 Score=23.29 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.6
Q ss_pred CeeEEEEecccccccc
Q 030396 39 RVEYLVLDEADKLFEV 54 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~ 54 (178)
....++|||+|.+...
T Consensus 105 ~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGS 120 (322)
T ss_dssp SSEEEEEETTTGGGCC
T ss_pred CCcEEEeecHHHhccc
Confidence 3468999999999643
No 306
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=32.59 E-value=12 Score=27.20 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCCcEEEe---CcHHHHHHHHc--CCCCCCCeeEEEEeccc
Q 030396 14 FSCDILIS---TPLRLRLAIRR--KKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 14 ~~~~Iii~---TP~~l~~~l~~--~~~~~~~l~~lViDE~d 49 (178)
+.+.+.++ ||..+.+.+.+ +.++++++.++-+||--
T Consensus 39 ~~~~l~LsgGstP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (248)
T 3oc6_A 39 GQATIVLTGGGTGIGLLKRVRERSGEIDWSKVHIYWGDERF 79 (248)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTGGGSCGGGEEEEESEEEC
T ss_pred CCEEEEECCCccHHHHHHHHHhhccCCCcceEEEEEeeecc
Confidence 44555554 45567777766 77999999999999974
No 307
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.50 E-value=78 Score=22.43 Aligned_cols=39 Identities=8% Similarity=-0.129 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCC--CCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLN--PPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~--~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++...+. .+..|||.+...|.-+...|++.|+
T Consensus 175 ~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 175 AYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp HHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 35667777777642 6788999999999999999999988
No 308
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=32.43 E-value=72 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..++-|||.+...|.-+...|.+.|+.
T Consensus 226 ~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~G~~ 263 (349)
T 1jye_A 226 FQQTMQMLNEG-IVPTAMLVANDQMALGAMRAITESGLR 263 (349)
T ss_dssp HHHHHHHHHTT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 45566677654 568899999999999999999999874
No 309
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=32.37 E-value=2e+02 Score=24.17 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=42.1
Q ss_pred EEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 116 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
++..+....|.......+... ++.++-++|+.-|..+++.+.+.|+++..+.|+..
T Consensus 159 lv~apTGSGKT~~al~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~ 214 (677)
T 3rc3_A 159 FHSGPTNSGKTYHAIQKYFSA--KSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEER 214 (677)
T ss_dssp EEECCTTSSHHHHHHHHHHHS--SSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCE
T ss_pred EEEcCCCCCHHHHHHHHHHhc--CCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCee
Confidence 334445556766555555444 45688899999999999999999999999999854
No 310
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=32.28 E-value=40 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhh
Q 030396 128 ALRQSFAESLNPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 128 ~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
.+..++.. ..+.++||++|.+..+.+++.|..
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~ 406 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG 406 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc
Confidence 34444443 467899999999999999998865
No 311
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=32.27 E-value=45 Score=23.74 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=69.6
Q ss_pred cCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEecc--cc---ccccCCChhhHHHHHhhCCCCCceEEEEeecCc-HHH
Q 030396 13 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEA--DK---LFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP-DFV 86 (178)
Q Consensus 13 ~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~--d~---ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~-~~~ 86 (178)
..+++-+|..|. .+ ..+.-..+-++.+|.. +. .+... .........+++....+++.+++.... ...
T Consensus 65 ~~~vdgiIi~~~----~~--~~~~~~~iPvV~~~~~~~~~~~~~V~~D-~~~~g~~a~~~L~~G~~~I~~i~~~~~~~~~ 137 (277)
T 3hs3_A 65 NNNVDGIITSAF----TI--PPNFHLNTPLVMYDSANINDDIVRIVSN-NTKGGKESIKLLSKKIEKVLIQHWPLSLPTI 137 (277)
T ss_dssp HTTCSEEEEECC----CC--CTTCCCSSCEEEESCCCCCSSSEEEEEC-HHHHHHHHHHTSCTTCCEEEEEESCTTSHHH
T ss_pred hCCCCEEEEcch----HH--HHHHhCCCCEEEEcccccCCCCEEEEEC-hHHHHHHHHHHHHhCCCEEEEEeCCCcCccH
Confidence 356777776661 11 1122345667788765 11 12222 456666677775533456666655432 222
Q ss_pred HHHHHHhc---c-CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCC
Q 030396 87 EELARSIM---H-DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDD 162 (178)
Q Consensus 87 ~~~~~~~~---~-~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g 162 (178)
......|. . ....+. .. +...+.. ...+.+++... ..+..|||.+...|.-+...|++.|
T Consensus 138 ~~R~~Gf~~~l~~~g~~~~------------~~-~~~~~~~--~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g 201 (277)
T 3hs3_A 138 RERIEAMTAEASKLKIDYL------------LE-ETPENNP--YISAQSALNKS-NQFDAIITVNDLYAAEIIKEAKRRN 201 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEE------------EE-ECCSSCH--HHHHHHHHHTG-GGCSEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCCC------------CC-CccCCch--HHHHHHHHcCC-CCCCEEEECCHHHHHHHHHHHHHcC
Confidence 22222221 1 111110 00 1111111 56677777765 5688999999999999999999988
Q ss_pred Cc
Q 030396 163 IR 164 (178)
Q Consensus 163 ~~ 164 (178)
+.
T Consensus 202 ~~ 203 (277)
T 3hs3_A 202 LK 203 (277)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 312
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.27 E-value=65 Score=22.97 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=30.8
Q ss_pred HHHHHHHHHH-hcCC-CCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFA-ESLN-PPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~-~~~~-~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++. .. . .+..|||.+...|.-+...|++.|++
T Consensus 173 ~~~~~~~~l~~~~-~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 173 GRAMTLHLLDLSP-ERRPTAIMTLNDTMAIGAMAAARERGLT 213 (287)
T ss_dssp HHHHHHHHHTSCT-TTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCC-CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 3456667776 44 4 67899999999999999999998874
No 313
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=32.01 E-value=19 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCEEEEeCCc-hHH----HHHHHHhhhCC---CceEeeecCCC
Q 030396 139 PPVLIFVQSK-DRA----KELYGELAFDD---IRAGVIHSDLS 173 (178)
Q Consensus 139 ~~~lIF~~t~-~~~----~~l~~~L~~~g---~~~~~lh~~~~ 173 (178)
++++++|.+- .++ ..+...|...| .++..+.||+.
T Consensus 105 ~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~ 147 (169)
T 3f4a_A 105 LNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFS 147 (169)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHH
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHH
Confidence 5789999863 333 34444444445 47889998864
No 314
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=31.98 E-value=17 Score=25.57 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhC----CCceEeeecCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFD----DIRAGVIHSDL 172 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~----g~~~~~lh~~~ 172 (178)
..+++|.++|++-+...++.+.+. |+.+..++|+.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 136 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA 136 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc
Confidence 457999999999999998888654 77888777653
No 315
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=31.88 E-value=65 Score=24.33 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCC-ceEeeecCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDI-RAGVIHSDL 172 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~-~~~~lh~~~ 172 (178)
.+++|+||+|=-+|-.+.-.|...|+ ++..|-|+.
T Consensus 275 ~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSW 310 (327)
T 3utn_X 275 SKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSW 310 (327)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcH
Confidence 56899999999999888888999999 577887754
No 316
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=31.82 E-value=38 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=17.2
Q ss_pred eeEEEEeccccccccCCChhhHHHHHhh
Q 030396 40 VEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 40 l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
-..+++||+|.+-... ...+..++..
T Consensus 101 ~~~l~lDEi~~l~~~~--q~~Ll~~l~~ 126 (265)
T 2bjv_A 101 GGTLFLDELATAPMMV--QEKLLRVIEY 126 (265)
T ss_dssp TSEEEEESGGGSCHHH--HHHHHHHHHH
T ss_pred CcEEEEechHhcCHHH--HHHHHHHHHh
Confidence 3589999999985433 4445555553
No 317
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=31.41 E-value=88 Score=21.95 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+..|||.+...|.-+...+++.|++
T Consensus 167 ~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 205 (276)
T 2h0a_A 167 GRLALRHFLEKA-SPPLNVFAGADQVALGVLEEAVRLGLT 205 (276)
T ss_dssp HHHHHHHHHTTC-CSSEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhCC-CCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 345566677654 568999999999999999999999874
No 318
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=31.28 E-value=36 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=15.9
Q ss_pred eEEEEeccccccccCCChhhHHHHHhh
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
+.+++||+|.|-... .+.+.+.+..
T Consensus 297 ~VliIDEa~~l~~~a--~~aLlk~lEe 321 (456)
T 2c9o_A 297 GVLFVDEVHMLDIEC--FTYLHRALES 321 (456)
T ss_dssp CEEEEESGGGCBHHH--HHHHHHHTTS
T ss_pred eEEEEechhhcCHHH--HHHHHHHhhc
Confidence 589999999994433 3344444443
No 319
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=31.19 E-value=70 Score=22.57 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.-...+.+++... ..+..|||.+...|.-+...|.+.|+.
T Consensus 162 ~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 201 (280)
T 3gyb_A 162 AGYTETLALLKEH-PEVTAIFSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp HHHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 3456677777765 567899999999999999999888864
No 320
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.13 E-value=76 Score=22.88 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.6
Q ss_pred eeEEEEecccccccc
Q 030396 40 VEYLVLDEADKLFEV 54 (178)
Q Consensus 40 l~~lViDE~d~ll~~ 54 (178)
...+++||+|.+...
T Consensus 114 ~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 114 PSIIFIDEVDSLLSE 128 (297)
T ss_dssp SEEEEEETGGGTSBC
T ss_pred CcEEEeccHHHhccc
Confidence 478999999999764
No 321
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=31.08 E-value=77 Score=22.52 Aligned_cols=36 Identities=6% Similarity=-0.126 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++.. .+..|||.+...|.-+...|++.|++
T Consensus 177 ~~~~~~~l~~---~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (288)
T 2qu7_A 177 YEATKTLLSK---GIKGIVATNHLLLLGALQAIKESEKE 212 (288)
T ss_dssp HHHHHHHHHT---TCCEEEECSHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhc---CCCEEEECCcHHHHHHHHHHHHhCCC
Confidence 3456666665 67889999999999999999998874
No 322
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=31.01 E-value=34 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=22.1
Q ss_pred CcHHHHHHHHcCC----CCCCCeeEEEEeccc
Q 030396 22 TPLRLRLAIRRKK----IDLSRVEYLVLDEAD 49 (178)
Q Consensus 22 TP~~l~~~l~~~~----~~~~~l~~lViDE~d 49 (178)
||..+.+.+.... ++++++.++-+||-=
T Consensus 40 tp~~~~~~L~~~~~~~~~~w~~v~~f~~DEr~ 71 (238)
T 1y89_A 40 TPKMLFKLLASQPYANDIQWKNLHFWWGDERC 71 (238)
T ss_dssp HHHHHHHHHTSTTHHHHSCGGGEEEEESEEES
T ss_pred cHHHHHHHHHhhhhccCCChhHeEEEeceecC
Confidence 5667777776544 899999999999964
No 323
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=30.78 E-value=32 Score=26.38 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.9
Q ss_pred eEEEEeccccccc
Q 030396 41 EYLVLDEADKLFE 53 (178)
Q Consensus 41 ~~lViDE~d~ll~ 53 (178)
..++|||+|.++.
T Consensus 209 ~il~iDEid~l~~ 221 (389)
T 3vfd_A 209 SIIFIDQVDSLLC 221 (389)
T ss_dssp EEEEEETGGGGC-
T ss_pred eEEEEECchhhcc
Confidence 6899999999954
No 324
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=30.71 E-value=1.5e+02 Score=22.19 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=38.7
Q ss_pred EEEcCChhhHHH-HHHHHHHhc----CCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 116 LVFAGSEEGKLL-ALRQSFAES----LNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~-~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
++..+....|.. .+.-++... ...+++|.|+|+.-+...++.+.. .|+.+..++|+...
T Consensus 62 li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 129 (400)
T 1s2m_A 62 LARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNL 129 (400)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCH
T ss_pred EEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcch
Confidence 334444445543 233333322 355899999999999888887754 37889999988654
No 325
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=30.62 E-value=55 Score=24.37 Aligned_cols=39 Identities=21% Similarity=0.056 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+..|||.+...|.-+...|.+.|+.
T Consensus 237 ~~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~G~~ 275 (355)
T 3e3m_A 237 GVAAAELILQEY-PDTDCIFCVSDMPAFGLLSRLKSIGVA 275 (355)
T ss_dssp HHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC-CCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 445666777765 578899999999999999999888863
No 326
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=30.62 E-value=36 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=28.4
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
.+.+++++||.-.-++.. ....+..++..+.....++++.|
T Consensus 271 ~~p~~lllDEp~~~LD~~-~~~~l~~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEE-RRRKLITIMERYLKKIPQVILVS 311 (339)
T ss_dssp TTTCEEEEECCCTTCCHH-HHHHHHHHHHHTGGGSSEEEEEE
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHhcCCEEEEEE
Confidence 466899999999988877 66667777766333445655544
No 327
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=30.60 E-value=36 Score=27.32 Aligned_cols=40 Identities=33% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceE
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~ 166 (178)
...+...++.. ..+++|.|.|..+++.+.+.|.+.|+++.
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~ 410 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQ 410 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCE
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCce
Confidence 45666666543 46899999999999999999999887653
No 328
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=30.48 E-value=40 Score=19.42 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=21.3
Q ss_pred EEEEe---CCchHHHHHHHHhhhCCCceEee
Q 030396 141 VLIFV---QSKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 141 ~lIF~---~t~~~~~~l~~~L~~~g~~~~~l 168 (178)
.-|.+ .++++|+.+...|+..|++...+
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~~g~~~~iv 76 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKMAGHTNCIR 76 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHHHCCSCCBC
T ss_pred EEEEECCcCCHHHHHHHHHHHHHcCCCcEEE
Confidence 34566 57889999999998888866654
No 329
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=30.46 E-value=89 Score=22.25 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
..+++|.++|++-|+..++.+.+ .+..+..+.|+.+.
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 166 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNR 166 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCH
Confidence 56799999999999998888765 46788888887654
No 330
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.40 E-value=55 Score=23.37 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...|.+.|+.
T Consensus 174 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 174 RDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 35566677654 677889999999999999999988864
No 331
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=30.39 E-value=28 Score=26.49 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.7
Q ss_pred CeeEEEEecccccccc
Q 030396 39 RVEYLVLDEADKLFEV 54 (178)
Q Consensus 39 ~l~~lViDE~d~ll~~ 54 (178)
..-.+|+||+|.+...
T Consensus 138 ~~~llvlDe~~~l~~~ 153 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSS 153 (412)
T ss_dssp CEEEEEEESTHHHHSC
T ss_pred CeEEEEEeCHHHHhhc
Confidence 3558999999999753
No 332
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=29.94 E-value=15 Score=29.65 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=28.5
Q ss_pred eEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
+++|+||.+.=++.. ....+..+++. +....+++++|-
T Consensus 419 ~~lilDEp~~gld~~-~~~~i~~~l~~-~~~~~~vi~itH 456 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGA-AAIAVAEQLSR-LADTRQVLVVTH 456 (517)
T ss_dssp SEEEECSCSSSCCTH-HHHHHHHHHHH-HHHHSEEEEECC
T ss_pred CEEEEeCCcCCCCHH-HHHHHHHHHHH-HhCCCEEEEEec
Confidence 899999999998887 67777777777 444566555443
No 333
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=29.88 E-value=86 Score=18.28 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCC--CEEEEeCCchHHHHHHHHh----hhCCCc
Q 030396 125 KLLALRQSFAESLNP--PVLIFVQSKDRAKELYGEL----AFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~--~~lIF~~t~~~~~~l~~~L----~~~g~~ 164 (178)
-.+.|++.+++...+ ++-|-..|+++|++.+..| .+.||.
T Consensus 32 vlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyn 77 (106)
T 1qys_A 32 VLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYN 77 (106)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCc
Confidence 456677777765444 3566789999999988876 567773
No 334
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.73 E-value=85 Score=21.91 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 123 EGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 123 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
..-...+.+++...+..+..|||.+...|.-+...|.+.|+
T Consensus 164 ~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 164 ECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCC
Confidence 34456677788777436788999999999999999999985
No 335
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.67 E-value=43 Score=19.03 Aligned_cols=22 Identities=36% Similarity=0.259 Sum_probs=14.9
Q ss_pred CchHHHHHHHHhhhCCCceEee
Q 030396 147 SKDRAKELYGELAFDDIRAGVI 168 (178)
Q Consensus 147 t~~~~~~l~~~L~~~g~~~~~l 168 (178)
++.+|+.+...|+..|+++.++
T Consensus 55 ~~~~A~~~~~~L~~~g~~~~iv 76 (79)
T 1x60_A 55 SKDNADTLAARAKNAGFDAIVI 76 (79)
T ss_dssp SHHHHHHHHHHHHHHTSCCEEE
T ss_pred CHHHHHHHHHHHHHcCCceEEE
Confidence 5567777777777777765554
No 336
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=29.45 E-value=38 Score=24.88 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.6
Q ss_pred eeEEEEeccccccc
Q 030396 40 VEYLVLDEADKLFE 53 (178)
Q Consensus 40 l~~lViDE~d~ll~ 53 (178)
...+++||+|.+..
T Consensus 109 p~il~iDEid~l~~ 122 (301)
T 3cf0_A 109 PCVLFFDELDSIAK 122 (301)
T ss_dssp SEEEEECSTTHHHH
T ss_pred CeEEEEEChHHHhh
Confidence 46899999999863
No 337
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=29.21 E-value=92 Score=22.19 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+.-|||.+...|--+...|++.|++
T Consensus 180 ~~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~G~~ 218 (288)
T 1gud_A 180 ALDVATNVLQRN-PNIKAIYCANDTMAMGVAQAVANAGKT 218 (288)
T ss_dssp HHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhC-CCceEEEECCCchHHHHHHHHHhcCCC
Confidence 345666777765 568899999999999999999998874
No 338
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=29.16 E-value=73 Score=22.69 Aligned_cols=37 Identities=14% Similarity=-0.079 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.++++ ...+..|||.+...|.-+...|++.|++
T Consensus 174 ~~~~~~~l~--~~~~~ai~~~~d~~a~g~~~al~~~g~~ 210 (290)
T 3clk_A 174 EQAMKAFGK--NTDLTGIIAASDMTAIGILNQASSFGIE 210 (290)
T ss_dssp HHHHHHHCT--TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhc--cCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 455666666 4678899999999999999999998864
No 339
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=29.08 E-value=72 Score=23.37 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...|++.|++
T Consensus 227 ~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 227 IEAVEKLLEED-EKPTAIFVGTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHHHHSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCC-CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 45566777654 567899999999999999999999874
No 340
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=29.02 E-value=37 Score=23.22 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=9.0
Q ss_pred hHHHHHHHHhhhCCCce
Q 030396 149 DRAKELYGELAFDDIRA 165 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~ 165 (178)
.+++.|...|...||.+
T Consensus 69 ~D~~~L~~~F~~LgF~V 85 (173)
T 2ql9_A 69 KDAEALFKCFRSLGFDV 85 (173)
T ss_dssp HHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 44555555555555554
No 341
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=28.81 E-value=1.4e+02 Score=22.45 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=39.9
Q ss_pred EEEcCChhhHH-HHHHHHHHh----cCCCCEEEEeCCchHHHHHHHHhhh----CCCceEeeecCCCc
Q 030396 116 LVFAGSEEGKL-LALRQSFAE----SLNPPVLIFVQSKDRAKELYGELAF----DDIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~-~~l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~----~g~~~~~lh~~~~~ 174 (178)
++..+....|. ..+.-++.. ....++||.|+|+.-+...++.+.. .++.+..++|+.+.
T Consensus 78 lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 145 (410)
T 2j0s_A 78 IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNV 145 (410)
T ss_dssp EEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCH
T ss_pred EEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCH
Confidence 34444555565 333334432 2467899999999999998887754 35788888888754
No 342
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.67 E-value=80 Score=22.54 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...|++.|++
T Consensus 183 ~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 183 LEALQHLMSLD-KKPTAILSATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp HHHHHHHTTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCC-CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 45566666654 567899999999999999999998863
No 343
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=28.53 E-value=93 Score=22.56 Aligned_cols=41 Identities=2% Similarity=-0.145 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhc--CCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 124 GKLLALRQSFAES--LNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 124 ~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.-...+.+++.++ ...+..|||.+...|.-+...|++.|+.
T Consensus 187 ~~~~~~~~~l~~~~~~~~~~ai~~~nd~~A~g~~~al~~~g~~ 229 (330)
T 3uug_A 187 TAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYG 229 (330)
T ss_dssp HHHHHHHHHHHHHCSSSCCCEEECSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCCchHHHHHHHHHHcCCC
Confidence 3456677788764 4678899999999999999999999985
No 344
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.10 E-value=74 Score=22.13 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=21.8
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEE
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 78 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~ 78 (178)
.+++++++||+.-+ . . ..+.++.+.. .+.|+++.
T Consensus 90 ~~~DvIlIDEaQFf-k-~-~ve~~~~L~~----~gk~VI~~ 123 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF-P-D-IVEFCEAMAN----AGKTVIVA 123 (195)
T ss_dssp HTCSEEEESSGGGC-T-T-HHHHHHHHHH----TTCEEEEE
T ss_pred cCCCEEEEEchhhh-H-H-HHHHHHHHHH----CCCeEEEE
Confidence 45789999999998 3 3 3444444443 35676653
No 345
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.06 E-value=87 Score=19.19 Aligned_cols=36 Identities=3% Similarity=-0.027 Sum_probs=26.5
Q ss_pred CCEEEEe----CCchHHHHHHHHhhhCCCceEeeecCCCc
Q 030396 139 PPVLIFV----QSKDRAKELYGELAFDDIRAGVIHSDLSQ 174 (178)
Q Consensus 139 ~~~lIF~----~t~~~~~~l~~~L~~~g~~~~~lh~~~~~ 174 (178)
.++++.| .|.--++++.+.+.+.|+++...|.+.+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~ 43 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL 43 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 3578888 44566677778888899988888776654
No 346
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=28.04 E-value=72 Score=23.47 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...|++.|++
T Consensus 226 ~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 263 (340)
T 1qpz_A 226 YRAMQQILSQP-HRPTAVFCGGDIMAMGALCAADEMGLR 263 (340)
T ss_dssp HHHHHHHHTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 45566677653 568899999999999999999998874
No 347
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=27.97 E-value=1.2e+02 Score=21.34 Aligned_cols=39 Identities=3% Similarity=-0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++... ..+..|||.+...|.-+...|++.|++
T Consensus 177 ~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 177 AYDGTVELLTKY-PDISVMVGLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHHHHC-TTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhC-CCceEEEECCCcchHHHHHHHHhcCCC
Confidence 345666777765 567899999999999999999988864
No 348
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.79 E-value=81 Score=23.10 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++.. .+..|||.+...|.-+...|++.|++
T Consensus 229 ~~~~~~ll~~---~~~ai~~~~d~~A~g~~~al~~~G~~ 264 (332)
T 2o20_A 229 KALAERLLER---GATSAVVSHDTVAVGLLSAMMDKGVK 264 (332)
T ss_dssp HHHHHHHHHT---TCCEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcc---CCCEEEECChHHHHHHHHHHHHcCCC
Confidence 4556666765 67899999999999999999998874
No 349
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.73 E-value=1e+02 Score=22.80 Aligned_cols=37 Identities=3% Similarity=-0.041 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.+++...+ + .|||.+...|.-+...|.+.|++
T Consensus 230 ~~~~~~~ll~~~~--~-ai~~~nD~~A~g~~~al~~~G~~ 266 (348)
T 3bil_A 230 GFEGATKLLDQGA--K-TLFAGDSMMTIGVIEACHKAGLV 266 (348)
T ss_dssp HHHHHHHHHHTTC--S-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC--C-EEEEcChHHHHHHHHHHHHcCCC
Confidence 3456677777663 7 99999999999999999999874
No 350
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.52 E-value=97 Score=22.11 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCCCE-EEEeCCchHHHHHHHHhhhCCCc
Q 030396 124 GKLLALRQSFAESLNPPV-LIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~-lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
.-...+.+++...+...+ .|||.+...|.-+...+++.|++
T Consensus 181 ~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~ 222 (306)
T 8abp_A 181 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 222 (306)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCC
Confidence 345667777777643333 69999999999999999999984
No 351
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.23 E-value=98 Score=21.87 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...|.+.|++
T Consensus 175 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~G~~ 212 (289)
T 1dbq_A 175 YRAMQQILSQP-HRPTAVFCGGDIMAMGALCAADEMGLR 212 (289)
T ss_dssp HHHHHHHHTSS-SCCSEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-CCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 45566666654 567889999999999999999998874
No 352
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=27.13 E-value=2.2e+02 Score=22.29 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=40.5
Q ss_pred EEEcCChhhHHHHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCC----CceEeeecCCCcc
Q 030396 116 LVFAGSEEGKLLALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDD----IRAGVIHSDLSQT 175 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g----~~~~~lh~~~~~~ 175 (178)
++..+....|.......+.. ....+++|.|+|+.-++..++.|...+ ..+..++|+.+..
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKD 198 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccc
Confidence 44444445564443333322 234599999999999999999997653 4788899987764
No 353
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=27.00 E-value=76 Score=22.58 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=29.6
Q ss_pred HHHHHH--HHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQ--SFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~--ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+ +++.. ..+..|||.+...|.-+...|++.|++
T Consensus 170 ~~~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 170 AGKLATFSLLKSA-VKPDAIFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp HHHHHHHHHHSSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCC-CCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 445566 66654 567899999999999999999988864
No 354
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.90 E-value=85 Score=26.43 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=24.1
Q ss_pred eeEEEEeccccccccCC---ChhhHHHHHhhCCCCCceEEEEeecCc
Q 030396 40 VEYLVLDEADKLFEVGN---LLKHIDPVVKACSNPSIVRSLFSATLP 83 (178)
Q Consensus 40 l~~lViDE~d~ll~~~~---~~~~i~~i~~~~~~~~~q~i~~SAT~~ 83 (178)
-..+++||+|.+...+. .......++..++.. ..+.++.||-+
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 36889999999975541 134445555553333 23334444443
No 355
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=26.37 E-value=48 Score=24.28 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=43.9
Q ss_pred CCcE-EEeCcHHHHHHHHcCCCCCCCeeEEEEecccc----ccccCC-----ChhhHHHHHhhCCCCCceEEEEeecCcH
Q 030396 15 SCDI-LISTPLRLRLAIRRKKIDLSRVEYLVLDEADK----LFEVGN-----LLKHIDPVVKACSNPSIVRSLFSATLPD 84 (178)
Q Consensus 15 ~~~I-ii~TP~~l~~~l~~~~~~~~~l~~lViDE~d~----ll~~~~-----~~~~i~~i~~~~~~~~~q~i~~SAT~~~ 84 (178)
+-+| |+||++.+.+-..++.+.-......|...+.. +++.|. ....+...++.+......++++..|-=+
T Consensus 111 ~~~IGVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~p 190 (269)
T 3ist_A 111 NNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYP 190 (269)
T ss_dssp SSEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGG
T ss_pred CCeEEEEeccchhhHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHH
Confidence 3355 78999998753321111100011223332222 234441 2334455556544456789999999887
Q ss_pred HHHHHHHHhccC
Q 030396 85 FVEELARSIMHD 96 (178)
Q Consensus 85 ~~~~~~~~~~~~ 96 (178)
-+...++..++.
T Consensus 191 ll~~~i~~~~~~ 202 (269)
T 3ist_A 191 LLKPIIENFMGD 202 (269)
T ss_dssp GGHHHHHHHHCT
T ss_pred HHHHHHHHHcCC
Confidence 777777776654
No 356
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=26.10 E-value=56 Score=21.45 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=17.5
Q ss_pred CCcEEEeCcHHHHHHHHcCC
Q 030396 15 SCDILISTPLRLRLAIRRKK 34 (178)
Q Consensus 15 ~~~Iii~TP~~l~~~l~~~~ 34 (178)
+|.-+||||.-|.-+++.+.
T Consensus 150 npsrligtpddlfgmlkdgm 169 (213)
T 3nku_A 150 NPSRLIGTPDDLFGMLKDGM 169 (213)
T ss_dssp CCEEEEECHHHHHHHHHTTC
T ss_pred CHHhhcCCcHHHHHHhhccc
Confidence 57789999999999998775
No 357
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=26.02 E-value=60 Score=24.51 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.4
Q ss_pred eeEEEEecccccccc
Q 030396 40 VEYLVLDEADKLFEV 54 (178)
Q Consensus 40 l~~lViDE~d~ll~~ 54 (178)
...++|||+|.+...
T Consensus 177 ~~vl~iDEid~l~~~ 191 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQ 191 (357)
T ss_dssp SEEEEEETHHHHTBC
T ss_pred CeEEEEeCchhhhcc
Confidence 478999999999653
No 358
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.86 E-value=25 Score=27.82 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=11.9
Q ss_pred CCeeEEEEeccccccccC
Q 030396 38 SRVEYLVLDEADKLFEVG 55 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~ 55 (178)
..-..++|||+|.+-...
T Consensus 105 ~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp TCCEEEEEETTTCC----
T ss_pred CCCcEEEEeChhhhCHHH
Confidence 345799999999995543
No 359
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=25.86 E-value=1.4e+02 Score=21.03 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++... ..+..|||.+...|..+...|++.|+
T Consensus 178 ~~~~~~~ll~~~-~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 178 AYKVTEQILQAH-PEIKAIWCGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCcEEEECCchHHHHHHHHHHHCCC
Confidence 345666777765 46788999999999999999999886
No 360
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=25.82 E-value=1.2e+02 Score=19.52 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCEEEEeC------CchHHHHHHHHhhhCCCceEeee
Q 030396 139 PPVLIFVQ------SKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 139 ~~~lIF~~------t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
.+++||+. +...|..+...|.+.|++...+.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vd 71 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVD 71 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEE
Confidence 57888987 67889999999988887655543
No 361
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.71 E-value=93 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHHHHHH-----HHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 125 KLLALRQS-----FAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 125 k~~~l~~l-----l~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
-...+.++ +... ..+..|||.+...|.-+...|.+.|+.
T Consensus 179 ~~~~~~~l~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 179 GSAALNTLYRGANLGKP-DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp HHHHHHHHHHHHCTTST-TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcchhhhcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 34556666 6553 678999999999999999999999864
No 362
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.62 E-value=1.5e+02 Score=19.77 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=18.2
Q ss_pred CCeeEEEEeccccc--cccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKL--FEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~l--l~~~~~~~~i~~i~~~ 67 (178)
.+.+++++||++.+ ++.. +...+..++..
T Consensus 98 ~~p~llilDEigp~~~ld~~-~~~~l~~~l~~ 128 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKK-FRDLVRQIMHD 128 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHH-HHHHHHHHHTC
T ss_pred cCCCEEEEeCCCCcccCCHH-HHHHHHHHHhc
Confidence 45579999996644 3433 55556655554
No 363
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=25.51 E-value=75 Score=17.96 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCEEEEeCCchHHHHHHHHhhh
Q 030396 138 NPPVLIFVQSKDRAKELYGELAF 160 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~ 160 (178)
..-++|.|.+.+.++.+.+.|.+
T Consensus 47 DDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 47 DDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 44688999999999999998865
No 364
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=25.41 E-value=43 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=28.6
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEee
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 80 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SA 80 (178)
..+.+++++||.-.-++.. ....+..+++. +...-.+++++.
T Consensus 149 ~~~p~lllLDEPts~LD~~-~~~~l~~~l~~-~~~~g~tiiivt 190 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDED-SKHKVLKSILE-ILKEKGIVIISS 190 (214)
T ss_dssp TSCCSEEEEESTTTTSCTT-THHHHHHHHHH-HHHHHSEEEEEE
T ss_pred HhCCCEEEEECCCcCCCHH-HHHHHHHHHHH-HHhCCCEEEEEe
Confidence 4677899999998888887 77777777776 332223444433
No 365
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=25.34 E-value=83 Score=24.67 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.8
Q ss_pred eeEEEEeccccccc
Q 030396 40 VEYLVLDEADKLFE 53 (178)
Q Consensus 40 l~~lViDE~d~ll~ 53 (178)
...++|||+|.+..
T Consensus 228 ~~vl~iDEid~l~~ 241 (444)
T 2zan_A 228 PSIIFIDEIDSLCG 241 (444)
T ss_dssp SEEEEESCTTTTCC
T ss_pred CeEEEEechHhhcc
Confidence 47899999999854
No 366
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=25.26 E-value=73 Score=21.48 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhhCCCceEeeecCCC
Q 030396 149 DRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 149 ~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
.+++.|...|...||.+.. +.+++
T Consensus 58 ~D~~~L~~~f~~LgF~V~~-~~dlt 81 (167)
T 1pyo_A 58 VDHSTLVTLFKLLGYDVHV-LCDQT 81 (167)
T ss_dssp HHHHHHHHHHHHTTEEEEE-EESCC
T ss_pred HHHHHHHHHHHHCCCEEEE-eeCCC
Confidence 3778888888888887644 34443
No 367
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=25.20 E-value=1e+02 Score=21.45 Aligned_cols=39 Identities=5% Similarity=-0.000 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.-...+.+++... ..+..|||.+...|.-+...|++.|+
T Consensus 173 ~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 173 AARSEMLRLLKET-PTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHHHHHC-SCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCceEEEECCchhhhHHHHHHHHcCC
Confidence 3456667777766 56789999999999999999999986
No 368
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.18 E-value=51 Score=23.80 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=25.8
Q ss_pred HHHHHHH-HHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQS-FAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~l-l~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.++ +... ..+.-|||.+...|.-+...|++.|+.
T Consensus 189 ~~~~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 189 RDFIKQYCIDAS-HMPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp HHHC---------CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhhcCC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 3445555 6554 578899999999999999999998874
No 369
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.05 E-value=1.5e+02 Score=20.91 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
...+.+++... ..+.-|||.+...|.-+.+.|++.|+
T Consensus 171 ~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 171 LSVMENILQAQ-PKIDAVFAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHHHHHHHHC-SCCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCccEEEECCchHHHHHHHHHHHCCC
Confidence 45566677665 56789999999999999999999886
No 370
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=24.96 E-value=1e+02 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=17.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
..-..+++||+|.+.... ...+...+..
T Consensus 105 ~~~~vl~lDEi~~l~~~~--~~~Ll~~l~~ 132 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAI--EEVLYPAMED 132 (338)
T ss_dssp CTTCEEEEETGGGCCHHH--HHHHHHHHHT
T ss_pred cCCCEEEEechhhcCHHH--HHHHHHHHHh
Confidence 455799999999985432 3444444443
No 371
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=24.87 E-value=44 Score=25.04 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=13.5
Q ss_pred chHHHHHHHHhhhCCCceEe
Q 030396 148 KDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 148 ~~~~~~l~~~L~~~g~~~~~ 167 (178)
..+++.|+..|+..||.+..
T Consensus 93 ~~Da~~L~~~f~~LGF~V~~ 112 (305)
T 1f1j_A 93 DKDAEALFKCFRSLGFDVIV 112 (305)
T ss_dssp HHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 35677777777777776543
No 372
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=24.47 E-value=39 Score=23.12 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.0
Q ss_pred Cee--EEEEecccccc
Q 030396 39 RVE--YLVLDEADKLF 52 (178)
Q Consensus 39 ~l~--~lViDE~d~ll 52 (178)
+.+ ++|+||...++
T Consensus 121 ~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 121 GYGKARLVIDSVSALF 136 (235)
T ss_dssp CSSCEEEEEETGGGGS
T ss_pred CCCceEEEEECchHhh
Confidence 457 99999999886
No 373
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=24.21 E-value=67 Score=22.79 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|..+...+++.|++
T Consensus 188 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 225 (296)
T 3brq_A 188 AEGVEMLLERG-AKFSALVASNDDMAIGAMKALHERGVA 225 (296)
T ss_dssp HHHHHHHHTC---CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 45566666653 567889999999999999999888764
No 374
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.21 E-value=1.2e+02 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++... ..+.-|||.+...|..+...+.+.|+
T Consensus 190 ~~~~~~~~l~~~-~~~~aI~~~nD~~A~g~~~al~~~G~ 227 (412)
T 4fe7_A 190 AQNRLADWLQTL-PPQTGIIAVTDARARHILQVCEHLHI 227 (412)
T ss_dssp HHHHHHHHHHHS-CTTEEEEESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCCeEEEEEecHHHHHHHHHHHHcCC
Confidence 445666777665 57899999999999999999988876
No 375
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=24.15 E-value=1.2e+02 Score=21.75 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.5
Q ss_pred eeEEEEecccccccc
Q 030396 40 VEYLVLDEADKLFEV 54 (178)
Q Consensus 40 l~~lViDE~d~ll~~ 54 (178)
-..+++||+|.+...
T Consensus 117 ~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 117 NGIVFIDEIDKICKK 131 (310)
T ss_dssp HCEEEEECGGGGSCC
T ss_pred CCEEEEEChhhcCcc
Confidence 568999999999654
No 376
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=24.15 E-value=2.5e+02 Score=21.68 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=51.0
Q ss_pred EEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecCcHHHHHHHHHhccCc-EEEEEcC-Cc---cccCCceEE--
Q 030396 43 LVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDA-VRVIVGR-KN---TASESIKQK-- 115 (178)
Q Consensus 43 lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~v~~~~-~~---~~~~~i~~~-- 115 (178)
+++|-+|.- .+....++.+-+. .+ .+.+++|...-..+............ ..+.+.. .. ..+..+...
T Consensus 310 viiD~AhNp---~s~~a~l~~l~~~-~~-~~~i~V~g~~~~kd~~~~~~~~~~~~d~vi~~~~~~~~r~~~~~~l~~~~~ 384 (428)
T 1jbw_A 310 IVIDGAHNP---DGINGLITALKQL-FS-QPITVIAGILADKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEALHE 384 (428)
T ss_dssp EEEECCCSH---HHHHHHHHHHHHH-CS-SCCEEEEECSSSTTHHHHHHHHHHHCSEEEECCCSCC--------------
T ss_pred EEEECCcCH---HHHHHHHHHHHHh-cC-CCEEEEEeeCCCCCHHHHHHHHhhhCCEEEEECCCCCCCCCCHHHHHhhhC
Confidence 688888832 2244444444433 33 45567777665544445444443312 2222122 11 111112111
Q ss_pred EEEcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhh
Q 030396 116 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELA 159 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~ 159 (178)
+... .+....+...++.. .+.++++|.|...+..+..+|.
T Consensus 385 ~~~~---~~~~~ai~~a~~~~-~~d~vLv~GS~~~~~~~~~~l~ 424 (428)
T 1jbw_A 385 GRLK---DSWQEALAASLNDV-PDQPIVITGSLYLASAVRQTLL 424 (428)
T ss_dssp -CBC---SSHHHHHHHHHHHC-TTSCEEEEESHHHHHHHHHHHT
T ss_pred Ceec---CCHHHHHHHHHhhC-CCCeEEEEeeHHHHHHHHHHHh
Confidence 1112 12334444445444 5667888999888887777664
No 377
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=24.01 E-value=2.3e+02 Score=22.57 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=37.6
Q ss_pred EcCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhC-CCceEeeec
Q 030396 118 FAGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFD-DIRAGVIHS 170 (178)
Q Consensus 118 ~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~-g~~~~~lh~ 170 (178)
.-.....|.-.+..+.+.. .++++|.|++...|..+++.|... |-.+..+-+
T Consensus 20 ~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~ 72 (483)
T 3hjh_A 20 GELTGAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 72 (483)
T ss_dssp ECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCC
T ss_pred eCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeC
Confidence 3335556777777777665 678999999999999999999764 333554443
No 378
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=23.79 E-value=78 Score=23.15 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=5.0
Q ss_pred HHHHHHHHHhc
Q 030396 126 LLALRQSFAES 136 (178)
Q Consensus 126 ~~~l~~ll~~~ 136 (178)
...|.++++..
T Consensus 48 ~~~L~~~f~~L 58 (277)
T 1nw9_B 48 CEKLRRRFSSL 58 (277)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 34444444444
No 379
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.59 E-value=59 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhh
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
..-..+++||+|.+.... ...+...+..
T Consensus 89 ~~~~~l~lDEi~~l~~~~--~~~L~~~l~~ 116 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQA--EEHLYPAMED 116 (324)
T ss_dssp CTTCEEEETTTTSCCHHH--HHHHHHHHHH
T ss_pred cCCCEEEEECCcccccch--HHHHHHHHHh
Confidence 456799999999985433 3444444443
No 380
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=23.59 E-value=90 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=18.7
Q ss_pred CCEEEEeCCc-------hHHHHHHHHhhhCCCce
Q 030396 139 PPVLIFVQSK-------DRAKELYGELAFDDIRA 165 (178)
Q Consensus 139 ~~~lIF~~t~-------~~~~~l~~~L~~~g~~~ 165 (178)
+++-|||.++ +.|..+...|.+.|+.+
T Consensus 23 ~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~l 56 (199)
T 3qua_A 23 WAVCVYCASGPTHPELLELAAEVGSSIAARGWTL 56 (199)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 5677888664 56677777777777654
No 381
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=23.56 E-value=1.3e+02 Score=21.17 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++... ..+.-|||.+...|--+...|++.|+
T Consensus 169 ~~~~~~~ll~~~-~~~~ai~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 169 GLNVMQNLLTAH-PDVQAVFAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHHHHHHHC-TTCCEEEESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCccEEEECCCcHHHHHHHHHHHcCC
Confidence 345666777765 56889999999999999999988876
No 382
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.50 E-value=2.8e+02 Score=22.13 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=79.8
Q ss_pred hccCCCcEEEeCcHH-----HHHHHHcCCCCCCCeeEEEEeccccccc-cCCChhhHHHHHhhCCCCCceEEEEeecC--
Q 030396 11 LSKFSCDILISTPLR-----LRLAIRRKKIDLSRVEYLVLDEADKLFE-VGNLLKHIDPVVKACSNPSIVRSLFSATL-- 82 (178)
Q Consensus 11 ~l~~~~~Iii~TP~~-----l~~~l~~~~~~~~~l~~lViDE~d~ll~-~~~~~~~i~~i~~~~~~~~~q~i~~SAT~-- 82 (178)
.+++...|+.|..|+ ...++.+. -++..+..-.+||.+.... .......+.++.+. .+++ .|++..|-
T Consensus 25 ~i~~~~~i~Hgp~GC~~~~~~r~~~~~~-~~~~~~~st~~e~~~i~~G~~~kL~~~I~~~~~~-~~P~--~I~V~tTC~~ 100 (511)
T 2xdq_B 25 SFKNVHGIMHAPLGDDYFNVMRSMLERE-RDFTPVTASIVDRHVLARGSQEKVVDNIIRKDTE-EHPD--LIVLTPTCTS 100 (511)
T ss_dssp TSTTEEEEEEECTTTTHHHHHHHHHTTC-SSCCSEEEEECCTTTTTTCSSSHHHHHHHHHHHH-HCCS--EEEEECCHHH
T ss_pred cCCCeEEEEECCcccccchhhhcccccC-CCCCceEeecccchheeCchHHHHHHHHHHHHHh-cCCC--EEEEeCCcHH
Confidence 345566788999998 33444433 2344556667777777642 11355666666666 3333 56665554
Q ss_pred ---cHHHHHHHHHhcc--CcEEEEEcCCccccCCceEEEEEcCChhhHHHHHHHHHH-h-----------cCCCCEEEEe
Q 030396 83 ---PDFVEELARSIMH--DAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA-E-----------SLNPPVLIFV 145 (178)
Q Consensus 83 ---~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~-----------~~~~~~lIF~ 145 (178)
..++..+++..-. +...+.+...+..- + +......-...+.+.+- . ...+++-|+-
T Consensus 101 e~IGdDi~~v~~~~~~~~g~pVi~v~tpgf~g-~------~~~G~d~a~~~lv~~~~~~~~~~~~~~~~~~~~~~VNiiG 173 (511)
T 2xdq_B 101 SILQEDLQNFVRRASLSTTADVLLADVNHYRV-N------ELQAADRTLEQIVQFYIDKARRQGTLGTSKTPTPSVNIIG 173 (511)
T ss_dssp HTTCCCHHHHHHHHHHHCSSEEEECCCCTTTC-C------HHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCSSCEEEEEE
T ss_pred HHhccCHHHHHHHhhhccCCCEEEeeCCCccc-c------hhHHHHHHHHHHHHHHhhccccccccccccCCCCceEEEe
Confidence 4456666666532 22233332221111 0 00111112223322221 1 1123455553
Q ss_pred ------CCchHHHHHHHHhhhCCCceE-eeecCCCc
Q 030396 146 ------QSKDRAKELYGELAFDDIRAG-VIHSDLSQ 174 (178)
Q Consensus 146 ------~t~~~~~~l~~~L~~~g~~~~-~lh~~~~~ 174 (178)
++..++..+...|...|+++. .+.|+-+.
T Consensus 174 ~~~~~~~~~gD~~eik~lL~~~Gi~v~~~~~gg~~~ 209 (511)
T 2xdq_B 174 ITTLGFHNQHDCRELKQLMADLGIQVNLVIPAAATV 209 (511)
T ss_dssp ECTTCTTHHHHHHHHHHHHHHHTCEEEEEEETTCCT
T ss_pred ccCCCCCCccHHHHHHHHHHHCCCeEEEEECCcCcH
Confidence 235788999999999999877 56666443
No 383
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=23.45 E-value=1.5e+02 Score=22.92 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEeecC
Q 030396 38 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 82 (178)
Q Consensus 38 ~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~SAT~ 82 (178)
..--++++||++.+.... .+..+++..-.-...+++.+-++
T Consensus 278 ~~~~~~~lDE~~~l~~~~----~l~~~~~~~R~~g~~~~~~~Qs~ 318 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA----SLADALTKGRKAGLRVVAGLQST 318 (437)
T ss_dssp TCCEEEEESCGGGSCBCS----SHHHHHHHCTTTTEEEEEEESCH
T ss_pred CccEEEEEEcccccccch----hHHHHHHHHhccCCEEEEEecCH
Confidence 445689999999996532 35556665222344444443333
No 384
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=23.38 E-value=1.3e+02 Score=18.07 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=15.1
Q ss_pred CCEEEEeC------CchHHHHHHHHhhhCCCceEe
Q 030396 139 PPVLIFVQ------SKDRAKELYGELAFDDIRAGV 167 (178)
Q Consensus 139 ~~~lIF~~------t~~~~~~l~~~L~~~g~~~~~ 167 (178)
.+++||.. +...|..+...|.+.|++...
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~ 49 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYET 49 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEE
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEE
Confidence 34555554 344555556666555554433
No 385
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.33 E-value=93 Score=22.11 Aligned_cols=38 Identities=11% Similarity=-0.139 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.-...+.+++... ..+..|||.+.. |.-+...|.+.|+
T Consensus 186 ~~~~~~~~~l~~~-~~~~ai~~~~d~-a~g~~~al~~~g~ 223 (304)
T 3gbv_A 186 EDSRMLDDFFREH-PDVKHGITFNSK-VYIIGEYLQQRRK 223 (304)
T ss_dssp CHHHHHHHHHHHC-TTCCEEEESSSC-THHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCeEEEEEcCcc-hHHHHHHHHHcCC
Confidence 3456777788776 567888998888 8899999999986
No 386
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=23.32 E-value=1.3e+02 Score=18.69 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCEEEEeC------CchHHHHHHHHhhhCCCc-eEee
Q 030396 139 PPVLIFVQ------SKDRAKELYGELAFDDIR-AGVI 168 (178)
Q Consensus 139 ~~~lIF~~------t~~~~~~l~~~L~~~g~~-~~~l 168 (178)
.+++||.. ...-|..+.+.|.+.|++ ...+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~v 56 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAY 56 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEE
Confidence 57888887 488888888888888874 4443
No 387
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=23.10 E-value=1.5e+02 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
...++||..+......+++.|.+.|+
T Consensus 185 ~~~tlVl~~~~~~~~~i~~~L~~~G~ 210 (294)
T 2ybo_A 185 GKQTLVFYMGLGNLAEIAARLVEHGL 210 (294)
T ss_dssp SSCEEEEESCGGGHHHHHHHHHHTTC
T ss_pred CCCeEEEECcHHHHHHHHHHHHhcCC
Confidence 46899999999999999999988876
No 388
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.97 E-value=1.3e+02 Score=17.87 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=16.5
Q ss_pred CCEEEEe------CCchHHHHHHHHhhhCCCceE
Q 030396 139 PPVLIFV------QSKDRAKELYGELAFDDIRAG 166 (178)
Q Consensus 139 ~~~lIF~------~t~~~~~~l~~~L~~~g~~~~ 166 (178)
.+++||. .+...|..+...|.+.|++..
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~ 50 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYE 50 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeE
Confidence 3566666 345566666666666655433
No 389
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=22.95 E-value=36 Score=21.10 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=25.6
Q ss_pred ccCCCcEEEeCcHHHHHHHHcCCCCCCCeeEEEEeccc
Q 030396 12 SKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEAD 49 (178)
Q Consensus 12 l~~~~~Iii~TP~~l~~~l~~~~~~~~~l~~lViDE~d 49 (178)
.+..+++.+.+|..|.+-++++.+-.-. .+.++-.||
T Consensus 63 ~~~~p~~~~V~P~WI~~Ci~~~klvp~~-~y~~~~~~~ 99 (104)
T 3pc6_A 63 LMENPSLAFVRPRWIYSCNEKQKLLPHQ-LYGVVPQAH 99 (104)
T ss_dssp HTTCTTCEEECHHHHHHHHHHTSCCCGG-GGBCCCCGG
T ss_pred hhhCCCCeEEccHHHHHHHhcCccCCcc-cceecchhh
Confidence 4567999999999999999876554322 344444444
No 390
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.94 E-value=1.1e+02 Score=21.87 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcC-CCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 126 LLALRQSFAESL-NPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 126 ~~~l~~ll~~~~-~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
...+.+++...+ ..+..|||.+...|.-+...|++.|-
T Consensus 189 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 227 (309)
T 2fvy_A 189 KDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK 227 (309)
T ss_dssp HHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCccEEEECCchhHHHHHHHHHHcCC
Confidence 455667776653 36789999999999999999988874
No 391
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.90 E-value=2.3e+02 Score=23.62 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCEEEEeCCchHHHHHHHHhh---hCCCceEeeecCCCcccc
Q 030396 138 NPPVLIFVQSKDRAKELYGELA---FDDIRAGVIHSDLSQTQV 177 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~---~~g~~~~~lh~~~~~~~R 177 (178)
..++++-++++.-|...++.++ ..|+++..++|+.+..++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~ 110 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE 110 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc
Confidence 5789999999999999999885 348999999999877654
No 392
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=22.86 E-value=1.3e+02 Score=21.97 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 138 NPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 138 ~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
...++||.........+++.|.+.|+
T Consensus 176 ~~~tlVl~~~~~~~~~i~~~L~~~G~ 201 (280)
T 1s4d_A 176 GSPVIVMYMAMKHIGAITANLIAGGR 201 (280)
T ss_dssp TCSEEEEESCSTTHHHHHHHHHHTTC
T ss_pred CCCeEEEECchhhHHHHHHHHHhcCC
Confidence 57899999999999999999988875
No 393
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=22.81 E-value=1.5e+02 Score=22.15 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=36.8
Q ss_pred EEEcCChhhHHHH-HHHHHHh----cCCCCEEEEeCCchHHHHHHHHhhhC-----CCceEeeecCCCc
Q 030396 116 LVFAGSEEGKLLA-LRQSFAE----SLNPPVLIFVQSKDRAKELYGELAFD-----DIRAGVIHSDLSQ 174 (178)
Q Consensus 116 ~~~~~~~~~k~~~-l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~~-----g~~~~~lh~~~~~ 174 (178)
++..+....|... +.-++.. ....+++|.++|+.-+...++.+.+. +..+....|+...
T Consensus 68 lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (412)
T 3fht_A 68 IAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136 (412)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCC
T ss_pred EEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcch
Confidence 3344444455433 3333332 23448999999999999998777652 5677777776543
No 394
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.49 E-value=76 Score=22.63 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCc
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIR 164 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~ 164 (178)
...+.+++... ..+..|||.+...|.-+...+++.|++
T Consensus 185 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 222 (293)
T 2iks_A 185 AQLFEKWLETH-PMPQALFTTSFALLQGVMDVTLRRDGK 222 (293)
T ss_dssp HHHHHHHTTTS-CCCSEEEESSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 45566666654 567899999999999999999887753
No 395
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=22.35 E-value=62 Score=22.77 Aligned_cols=28 Identities=43% Similarity=0.554 Sum_probs=23.4
Q ss_pred eCcHHHHHHHHcCCCCCCCeeEEEEecc
Q 030396 21 STPLRLRLAIRRKKIDLSRVEYLVLDEA 48 (178)
Q Consensus 21 ~TP~~l~~~l~~~~~~~~~l~~lViDE~ 48 (178)
.||..+.+.+....++++++.++=+||-
T Consensus 38 ~T~~~~~~~L~~~~~~~~~v~v~~ldEr 65 (234)
T 2ri0_A 38 STPLELYKEIRESHLDFSDMVSINLDEY 65 (234)
T ss_dssp STTHHHHHHHHTSCCCCTTCEEEESEEE
T ss_pred CCHHHHHHHHHhcCCChhheEEEeCeee
Confidence 4678888888876689999999999984
No 396
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=22.13 E-value=1.6e+02 Score=20.52 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=24.9
Q ss_pred EEEEeCCchHHHHHHHHhhhCCC---ceEeeecCCC
Q 030396 141 VLIFVQSKDRAKELYGELAFDDI---RAGVIHSDLS 173 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~~g~---~~~~lh~~~~ 173 (178)
+|+|+++.+.+..+...|.+..+ -.+..+|..+
T Consensus 68 lll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~ 103 (217)
T 2i82_A 68 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPS 103 (217)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCS
T ss_pred EEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccC
Confidence 88999999999999999987654 3344555544
No 397
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=21.99 E-value=87 Score=25.04 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=12.3
Q ss_pred CeeEEEEeccccccc
Q 030396 39 RVEYLVLDEADKLFE 53 (178)
Q Consensus 39 ~l~~lViDE~d~ll~ 53 (178)
....++|||+|.+..
T Consensus 108 ~p~ILfIDEid~l~~ 122 (476)
T 2ce7_A 108 APCIVFIDEIDAVGR 122 (476)
T ss_dssp CSEEEEEETGGGTCC
T ss_pred CCCEEEEechhhhhh
Confidence 356899999999864
No 398
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=21.94 E-value=2.9e+02 Score=22.08 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=29.1
Q ss_pred HH-HHHHHHHHh------cCCCCEEEEeCCc-------hHHHHHHHHhhhCCCce
Q 030396 125 KL-LALRQSFAE------SLNPPVLIFVQSK-------DRAKELYGELAFDDIRA 165 (178)
Q Consensus 125 k~-~~l~~ll~~------~~~~~~lIF~~t~-------~~~~~l~~~L~~~g~~~ 165 (178)
++ +.+.++++. ...++++|||.+. +.|..+...|.+.|+.+
T Consensus 126 ~it~~vf~~Lrna~~~~p~r~~~IvV~cGSs~~~p~yye~A~eLGr~LA~~G~~L 180 (462)
T 3gh1_A 126 HITNLVFGILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNI 180 (462)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHhhccccCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 44 777777764 4466899999763 44677778888888753
No 399
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=21.74 E-value=1.6e+02 Score=21.12 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhCCCce
Q 030396 150 RAKELYGELAFDDIRA 165 (178)
Q Consensus 150 ~~~~l~~~L~~~g~~~ 165 (178)
.+....+.+...|.++
T Consensus 101 ~~~~~~~~~~~~g~~~ 116 (246)
T 1jzt_A 101 FYKQLVHQLNFFKVPV 116 (246)
T ss_dssp HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHcCCcE
Confidence 3444444455555543
No 400
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.69 E-value=1.9e+02 Score=20.50 Aligned_cols=38 Identities=0% Similarity=-0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++... ..+..|||.+...|.-+.+.|++.|+
T Consensus 176 ~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~ 213 (303)
T 3d02_A 176 SRRTTLDLMKTY-PDLKAVVSFGSNGPIGAGRAVKEKRA 213 (303)
T ss_dssp HHHHHHHHHHHC-TTEEEEEESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCCEEEEeCCcchhHHHHHHHhcCC
Confidence 345666777765 45789999999999999999999987
No 401
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=21.66 E-value=1.5e+02 Score=21.52 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 126 LLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 126 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
...+.+++... ..+..|||.+...|.-+...|.+.|+
T Consensus 176 ~~~~~~ll~~~-~~~~aI~~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 176 EIEMDSMLRRH-PKIDAVYAHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp HHHHHHHHHHC-SCCCEEEESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCCEEEECCCchHHHHHHHHHHcCC
Confidence 45667777765 56788999999999999999998886
No 402
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=21.62 E-value=1.6e+02 Score=20.60 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=24.4
Q ss_pred EEEEeCCchHHHHHHHHhhhCCC---ceEeeecCCCc
Q 030396 141 VLIFVQSKDRAKELYGELAFDDI---RAGVIHSDLSQ 174 (178)
Q Consensus 141 ~lIF~~t~~~~~~l~~~L~~~g~---~~~~lh~~~~~ 174 (178)
+|+|+++.+.+..+...|.+..+ -.+..+|.++.
T Consensus 59 lll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~ 95 (228)
T 1v9k_A 59 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 95 (228)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCT
T ss_pred EEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCC
Confidence 88999999999999998876554 23444555443
No 403
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=21.62 E-value=1.1e+02 Score=20.67 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=26.3
Q ss_pred CCCCEEEEeCCc--hHHHHHHHHhhhCCCceEeeec
Q 030396 137 LNPPVLIFVQSK--DRAKELYGELAFDDIRAGVIHS 170 (178)
Q Consensus 137 ~~~~~lIF~~t~--~~~~~l~~~L~~~g~~~~~lh~ 170 (178)
+...++||+|+- ..+-.++..++++|.++..+.+
T Consensus 77 ~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 77 AVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 345688888654 4467788888999999998888
No 404
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=21.61 E-value=1.3e+02 Score=23.28 Aligned_cols=14 Identities=0% Similarity=0.133 Sum_probs=11.4
Q ss_pred CeeEEEEecccccc
Q 030396 39 RVEYLVLDEADKLF 52 (178)
Q Consensus 39 ~l~~lViDE~d~ll 52 (178)
+..++|+||+|.+-
T Consensus 273 ~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 273 SFAMIYIEDCAFIP 286 (385)
T ss_dssp CCSEEEEESGGGST
T ss_pred CCCEEEechhhhcC
Confidence 34689999999884
No 405
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=21.54 E-value=3.2e+02 Score=22.37 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=38.7
Q ss_pred EEEcCChhhHHHHHHHHHHh---cCCCCEEEEeCCchHHHHHHHHhhhCCCceEeee
Q 030396 116 LVFAGSEEGKLLALRQSFAE---SLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIH 169 (178)
Q Consensus 116 ~~~~~~~~~k~~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh 169 (178)
.+.-+....|...+..++.. ....++++.++|..-++.+.+.|...|.++.-+.
T Consensus 199 li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~ 255 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC 255 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeec
Confidence 34444555676666665542 2467899999999999999999988887655443
No 406
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=21.18 E-value=76 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=16.3
Q ss_pred eEEEEeccccccccCCChhhHHHHHhh
Q 030396 41 EYLVLDEADKLFEVGNLLKHIDPVVKA 67 (178)
Q Consensus 41 ~~lViDE~d~ll~~~~~~~~i~~i~~~ 67 (178)
..+++||+|.+-... ...+..+++.
T Consensus 98 g~L~LDEi~~l~~~~--q~~Ll~~l~~ 122 (304)
T 1ojl_A 98 GTLFLDEIGDISPLM--QVRLLRAIQE 122 (304)
T ss_dssp SEEEEESCTTCCHHH--HHHHHHHHHS
T ss_pred CEEEEeccccCCHHH--HHHHHHHHhc
Confidence 489999999995432 4444455543
No 407
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.16 E-value=1e+02 Score=19.27 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=20.6
Q ss_pred CCCEEEEeCC------chHHHHHHHHhhhCCCc
Q 030396 138 NPPVLIFVQS------KDRAKELYGELAFDDIR 164 (178)
Q Consensus 138 ~~~~lIF~~t------~~~~~~l~~~L~~~g~~ 164 (178)
..+++||..+ ..-|..+.+.|.+.|++
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~ 47 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVD 47 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBC
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCC
Confidence 4578888874 77888888888877765
No 408
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=21.10 E-value=20 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=25.4
Q ss_pred CCcEEEe---CcHHHHHHHH---cCCCCC-CCeeEEEEeccc
Q 030396 15 SCDILIS---TPLRLRLAIR---RKKIDL-SRVEYLVLDEAD 49 (178)
Q Consensus 15 ~~~Iii~---TP~~l~~~l~---~~~~~~-~~l~~lViDE~d 49 (178)
.+.+.++ ||..+.+.+. +..+++ +++.++-+||-=
T Consensus 37 ~~~l~LsgGstP~~ly~~L~~~~~~~idw~~~v~~f~~DEr~ 78 (266)
T 3eb9_A 37 PLSIALAGGSTPKMTYARLHDEHLNLLREKRALRFFMGDERM 78 (266)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHHTTSCCEEEEESEEES
T ss_pred CEEEEEcCCCCHHHHHHHHHHHhhcCCChHHcEEEEeeeeec
Confidence 3455554 4666777765 457899 999999999954
No 409
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=21.07 E-value=83 Score=24.95 Aligned_cols=55 Identities=7% Similarity=-0.078 Sum_probs=43.9
Q ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCCceEeeecCCC
Q 030396 119 AGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDIRAGVIHSDLS 173 (178)
Q Consensus 119 ~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~ 173 (178)
|..-..+...|.+.|....-.-.+.-||--++=+.++..|.+.|+++...+|.-.
T Consensus 60 ~lH~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~aaal~~~gi~v~a~~g~~~ 114 (435)
T 3gvp_A 60 CTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESE 114 (435)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSCCCHHHHHHHHHHTCCEECCTTCCH
T ss_pred EEccHHHHHHHHHHHHHCCCEEEEEecCCCcChHHHHHHHHhcCCeEEEecCCCH
Confidence 3344578999999999885555666788777778889999999999999998743
No 410
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=20.84 E-value=89 Score=22.67 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCeeEEEEeccccccccCCChhhHHHHHhhCCCCCceEEEEe
Q 030396 37 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 79 (178)
Q Consensus 37 ~~~l~~lViDE~d~ll~~~~~~~~i~~i~~~~~~~~~q~i~~S 79 (178)
..+.+++++||.-.-++.. ....+..+++.+....-.+++++
T Consensus 172 ~~~p~lllLDEPts~LD~~-~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAG-NQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TTCCSEEEEESTTTTCCHH-HHHHHHHHHHHCTTTTTSEEEEE
T ss_pred hcCCCEEEEECCccCCCHH-HHHHHHHHHHHHHhhcCCEEEEE
Confidence 5778999999999998887 77888888887322223445553
No 411
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=20.58 E-value=2.1e+02 Score=20.53 Aligned_cols=38 Identities=3% Similarity=-0.208 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 125 KLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 125 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
-...+.+++... ..+..|||.+...|.-+...|++.|+
T Consensus 169 ~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~G~ 206 (313)
T 2h3h_A 169 AVSLAEAALNAH-PDLDAFFGVYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp HHHHHHHHHHHC-TTCCEEEECSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHC-cCceEEEEcCCCccHHHHHHHHHcCC
Confidence 345666777765 46788999998899999999999885
No 412
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=20.48 E-value=61 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=16.2
Q ss_pred eeEEEEeccccccccCCChhhHHHHHh
Q 030396 40 VEYLVLDEADKLFEVGNLLKHIDPVVK 66 (178)
Q Consensus 40 l~~lViDE~d~ll~~~~~~~~i~~i~~ 66 (178)
-..+++||+|.+-... ...+..++.
T Consensus 145 ~~vl~iDEi~~l~~~~--~~~Ll~~le 169 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHI--VDLLLDVAQ 169 (350)
T ss_dssp TEEEEETTGGGSCHHH--HHHHHHHHH
T ss_pred CCEEEEeChhhCCHHH--HHHHHHHHh
Confidence 3589999999985433 344444444
No 413
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.46 E-value=1.7e+02 Score=25.88 Aligned_cols=40 Identities=5% Similarity=0.065 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCchHHHHHHHHhhh----CCC----ceEeeecCCCccc
Q 030396 137 LNPPVLIFVQSKDRAKELYGELAF----DDI----RAGVIHSDLSQTQ 176 (178)
Q Consensus 137 ~~~~~lIF~~t~~~~~~l~~~L~~----~g~----~~~~lh~~~~~~~ 176 (178)
...+++|.++|+.-|...++.+.. .|+ .+..++|+.+..+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~ 145 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKRE 145 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhh
Confidence 357899999999999998887754 466 8999999988754
No 414
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.26 E-value=2.4e+02 Score=19.98 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHhhhCCC
Q 030396 124 GKLLALRQSFAESLNPPVLIFVQSKDRAKELYGELAFDDI 163 (178)
Q Consensus 124 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~ 163 (178)
.-...+.+++... ..+..|||.+...|.-+...|++.|+
T Consensus 173 ~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 173 HSRRVAHQLLEDY-PNLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCceEEEECCCcchhhHHHHHHhcCC
Confidence 3456667777766 56899999999999999999999987
Done!