BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030399
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AXN|A Chain A, The High Resolution Structure Of Annexin Iii Shows
Differences With Annexin V
Length = 323
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 50 GTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRI 86
G F V L+ PPA F+A +LK G G N+ + I
Sbjct: 78 GHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALI 114
>pdb|1AII|A Chain A, Annexin Iii
Length = 323
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 50 GTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRI 86
G F V L+ PPA F+A +LK G G N+ + I
Sbjct: 78 GHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALI 114
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 381 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 434
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 263 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 316
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 210 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 263
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 210 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 263
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 259 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 312
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 211 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 264
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 210 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 263
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 82 DYSRILPRTYILSH-CDFTA--NLTLTISNVINLE-QLRGWYIKDDVVAEWKKV 131
+++R+L T LSH DF N +++ + + QL+ ++KD+ + WKK+
Sbjct: 210 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 263
>pdb|4DOH|R Chain R, Il20IL201IL20R2 TERNARY COMPLEX
pdb|4DOH|E Chain E, Il20IL201IL20R2 TERNARY COMPLEX
Length = 221
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 4/131 (3%)
Query: 19 DLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGE 78
DLSA +++ + S A G F +GPP + K + +
Sbjct: 68 DLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVL 127
Query: 79 GMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDDM 135
+ + P +S +NL +S V+N + R W +V W +
Sbjct: 128 TAPEKWKRNPEDLPVSMQQIYSNLKYNVS-VLNTKSNRTWSQCVTNHTLVLTWLEPNTLY 186
Query: 136 CLHVHCYVSGP 146
C+HV +V GP
Sbjct: 187 CVHVESFVPGP 197
>pdb|2D0T|A Chain A, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0T|B Chain B, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|A Chain A, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|B Chain B, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
Length = 406
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 77 GEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKK 130
G+G D ++LPR + +C + L L V D V+A WKK
Sbjct: 96 GKGHGDVRKVLPRNIAVPYCQLSKKLELPPILV----------YADCVLANWKK 139
>pdb|1HNN|A Chain A, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1HNN|B Chain B, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1N7I|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7I|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7J|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
pdb|1N7J|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
Length = 282
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
A+ E S ++ +G G Y +LS C ++T+T +N ++L W ++
Sbjct: 66 ATGEVSGRTLIDIGSGPTVYQ-------LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 118
Query: 124 VVAEWKKVRDDMCL---HVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPS 173
W CL C+ LR + PLG+ P+
Sbjct: 119 GAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 171
>pdb|3HCA|A Chain A, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCA|B Chain B, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
A+ E S ++ +G G Y +LS C ++T+T +N ++L W ++
Sbjct: 66 ATGEVSGRTLIDIGSGPTVYQ-------LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 118
Query: 124 VVAEWKKVRDDMCL---HVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPS 173
W CL C+ LR + PLG+ P+
Sbjct: 119 GAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 171
>pdb|3HCE|A Chain A, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCE|B Chain B, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
A+ E S ++ +G G Y +LS C ++T+T +N ++L W ++
Sbjct: 66 ATGEVSGRTLIDIGSGPTVYQ-------LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 118
Query: 124 VVAEWKKVRDDMCL---HVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPS 173
W CL C+ LR + PLG+ P+
Sbjct: 119 GAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 171
>pdb|2OBF|A Chain A, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2OBF|B Chain B, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2ONZ|A Chain A, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2ONZ|B Chain B, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2OPB|A Chain A, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
pdb|2OPB|B Chain B, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
Length = 289
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
A+ E S ++ +G G Y +LS C ++T+T +N ++L W ++
Sbjct: 66 ATGEVSGRTLIDIGSGPTVYQ-------LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 118
Query: 124 VVAEWKKVRDDMCL---HVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPS 173
W CL C+ LR + PLG+ P+
Sbjct: 119 GAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 171
>pdb|1YZ3|A Chain A, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|1YZ3|B Chain B, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|2AN3|A Chain A, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN3|B Chain B, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN4|A Chain A, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN4|B Chain B, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN5|A Chain A, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2AN5|B Chain B, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2G8N|A Chain A, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G8N|B Chain B, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G70|A Chain A, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G70|B Chain B, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G71|A Chain A, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G71|B Chain B, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G72|A Chain A, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2G72|B Chain B, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2ONY|A Chain A, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|2ONY|B Chain B, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|3HCB|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCB|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCC|A Chain A, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCC|B Chain B, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCD|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCD|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCF|A Chain A, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3HCF|B Chain B, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3KPJ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPJ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPU|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPU|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KPY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KQM|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQM|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQO|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQO|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQP|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQP|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQQ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQQ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQS|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQS|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQT|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQT|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KQY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KR0|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR0|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR1|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR1|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|4DM3|A Chain A, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
pdb|4DM3|B Chain B, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
Length = 289
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
A+ E S ++ +G G Y +LS C ++T+T +N ++L W ++
Sbjct: 66 ATGEVSGRTLIDIGSGPTVYQ-------LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 118
Query: 124 VVAEWKKVRDDMCL---HVHCYVSGPSLLRDLAAEFRYHIFTKEMPLGSHVPS 173
W CL C+ LR + PLG+ P+
Sbjct: 119 GAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,323,940
Number of Sequences: 62578
Number of extensions: 196389
Number of successful extensions: 597
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 17
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)