Query 030399
Match_columns 178
No_of_seqs 66 out of 68
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 21:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_A 30S ribosomal protein S 71.3 21 0.00073 29.3 8.4 76 63-143 24-123 (198)
2 3rgh_A Filamin-A; cell adhesio 47.9 42 0.0014 23.5 5.5 44 61-106 1-45 (100)
3 2xzm_4 40S ribosomal protein S 46.4 1E+02 0.0036 26.5 8.7 80 63-143 37-144 (265)
4 3w1s_C Ubiquitin-like protein 46.4 12 0.0004 27.2 2.4 36 64-101 2-37 (91)
5 1wz3_A Autophagy 12B, ATG12B, 44.4 13 0.00043 27.2 2.3 36 61-98 1-39 (96)
6 2d7p_A Filamin-C; beta-sandwic 32.0 1.3E+02 0.0045 21.5 6.2 75 63-141 6-85 (112)
7 3qii_A PHD finger protein 20; 25.7 34 0.0012 24.9 2.0 21 114-135 18-38 (85)
8 3p8d_A Medulloblastoma antigen 23.8 39 0.0013 23.4 1.9 16 117-133 6-21 (67)
9 2e5q_A PHD finger protein 19; 22.9 43 0.0015 23.4 2.0 17 121-139 11-27 (63)
10 2di8_A Filamin-B; beta-sandwic 20.2 2.4E+02 0.0081 19.9 7.0 78 61-141 4-84 (111)
11 2e5p_A Protein PHF1, PHD finge 20.1 1.1E+02 0.0036 21.6 3.5 22 121-144 13-34 (68)
No 1
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.27 E-value=21 Score=29.30 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCCCCCCCcEEEeecCCCCCCCCCCCceeeeccCCcCcc--------------------eEEEEehhhhhhhhc----cc
Q 030399 63 PASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTAN--------------------LTLTISNVINLEQLR----GW 118 (178)
Q Consensus 63 p~~Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~T~~--------------------LfLtIg~~fn~dqL~----~w 118 (178)
|+.|+-..+--+.. +....+.+|.+-+|..|.|+| ||==.|.+...|+|. .|
T Consensus 24 P~~F~~~~iG~T~~----~~~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~a~T~F~G~~lT~DklrSlVrk~ 99 (198)
T 3j20_A 24 PDFFGGVEVGLTPA----DDPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRK 99 (198)
T ss_dssp CSSSSCCCCCEEEE----ESSSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSEEEEEEEEECCCHHHHHHHCCSS
T ss_pred chhcCCceeEEEEc----cCcccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCEEEEEEcceeechhhhhhheecc
Confidence 57788777766665 224669999999999999987 344456777888776 46
Q ss_pred cccceEEEEEEecCCeeEEEEEEEE
Q 030399 119 YIKDDVVAEWKKVRDDMCLHVHCYV 143 (178)
Q Consensus 119 ~~RDEVlAEW~~~~g~~~LhVyc~V 143 (178)
.++=|..-.=+.. ..|.|.|+|-.
T Consensus 100 ~s~Iea~vdVkT~-DGy~lRvf~i~ 123 (198)
T 3j20_A 100 TTRIDGIFNITTK-DGYKLRVMAMA 123 (198)
T ss_dssp SCEEEEEEEEECT-TSCEEEEEEEE
T ss_pred eeEEEEEEEEEec-CCCEEEEEEEE
Confidence 6666666665544 55889888864
No 2
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=47.89 E-value=42 Score=23.46 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=31.2
Q ss_pred CCCCCCCCCCcEEEeecCCCCCCCCCCCceeeeccCCc-CcceEEEE
Q 030399 61 GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF-TANLTLTI 106 (178)
Q Consensus 61 gpp~~Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~-T~~LfLtI 106 (178)
|.|..+||+|..+. |+|+.+...-.+..+|+.=.|. .++|...|
T Consensus 1 ~~~~~~d~skv~~~--GpGL~~~~vg~~~~F~V~~~~aG~~~l~v~i 45 (100)
T 3rgh_A 1 GAMDPFDASKVKCS--GPGLERATAGEVGQFQVDCSSAGSAELTIEI 45 (100)
T ss_dssp --CCCCCGGGCEEE--SGGGTEEETTSCEEEEEECTTSCSCCEEEEE
T ss_pred CCcCCcccccCEEE--CCCcCCeEcCCcEEEEEEECCCCCceEEEEE
Confidence 45788999999985 6677655556788899988874 33466666
No 3
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=46.40 E-value=1e+02 Score=26.46 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCCCCCCcEEEeec--CCCC-CCCCCCCceeeeccCCcCcc---------------------eEEEEehhhhhhhhc--
Q 030399 63 PASFEASKLKVVFLG--EGMN-DYSRILPRTYILSHCDFTAN---------------------LTLTISNVINLEQLR-- 116 (178)
Q Consensus 63 p~~Fnp~KLsV~f~g--~~~t-~~~PiipRrYTLTHsD~T~~---------------------LfLtIg~~fn~dqL~-- 116 (178)
|+.|+-..+=-+... .|.. ....+.+|.+-+|..|.|++ ||==.|.++..|.|.
T Consensus 37 P~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSl 116 (265)
T 2xzm_4 37 PIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSM 116 (265)
T ss_dssp CTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHS
T ss_pred CcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhh
Confidence 567777666656542 1111 23457899999999998887 333456777777765
Q ss_pred --cccccceEEEEEEecCCeeEEEEEEEE
Q 030399 117 --GWYIKDDVVAEWKKVRDDMCLHVHCYV 143 (178)
Q Consensus 117 --~w~~RDEVlAEW~~~~g~~~LhVyc~V 143 (178)
.|.++=|..-.=+. ...|.|.|+|-.
T Consensus 117 VrKw~s~Iea~vdVkT-~DGY~lRvf~i~ 144 (265)
T 2xzm_4 117 IRKWQTLIEARVDCKT-NDGYIIRVFTLA 144 (265)
T ss_dssp CCTTBCEEEEEEEEEE-TTTEEEEEEEEE
T ss_pred hcccceeEEEEEEEEe-CCCcEEEEEEEE
Confidence 46666666666654 446999998853
No 4
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=46.36 E-value=12 Score=27.18 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCCCCCCcEEEeecCCCCCCCCCCCceeeeccCCcCcc
Q 030399 64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTAN 101 (178)
Q Consensus 64 ~~Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~T~~ 101 (178)
+.++++|+.|.|.+ +...+.+..++|.+.-++-.++
T Consensus 2 ~~~~~~Kv~vrfk~--~g~~P~l~k~KflV~~~~t~~~ 37 (91)
T 3w1s_C 2 AHMNIQKIQIKFQP--IGSIGQLKPSVCKISMSQSFAM 37 (91)
T ss_dssp ----CCEEEEEEEE--CCC-------EEEEETTSBHHH
T ss_pred CCCCCCeEEEEEEe--cCCCCcccccEEEcCCCCCHHH
Confidence 57899999999985 4445678888999877665444
No 5
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=44.44 E-value=13 Score=27.16 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=20.2
Q ss_pred CCCCC---CCCCCcEEEeecCCCCCCCCCCCceeeeccCCc
Q 030399 61 GPPAS---FEASKLKVVFLGEGMNDYSRILPRTYILSHCDF 98 (178)
Q Consensus 61 gpp~~---Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~ 98 (178)
|||+. .+++|+.|.|.. +...+.+..++|.+.-++.
T Consensus 1 ~~~~~~~~~~~~KV~V~~~~--~~~~P~l~k~KflV~~~~t 39 (96)
T 1wz3_A 1 GPMATESPNSVQKIVVHLRA--TGGAPILKQSKFKVSGSDK 39 (96)
T ss_dssp -----------CEEEEEEEE--CTTCCCCSCCEEEEETTSB
T ss_pred CCcCCCCCCCCCeEEEEEEE--CCCCCcccccEEEeCCCCc
Confidence 55554 779999999984 3345567778888765543
No 6
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=32.01 E-value=1.3e+02 Score=21.54 Aligned_cols=75 Identities=8% Similarity=0.035 Sum_probs=48.6
Q ss_pred CCCCCCCCcEEEeecCCCCCCCCCCCceeeeccCCcCcceEEEEehhhh---hhhhccccccc-eEEEEEE-ecCCeeEE
Q 030399 63 PASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVIN---LEQLRGWYIKD-DVVAEWK-KVRDDMCL 137 (178)
Q Consensus 63 p~~Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~T~~LfLtIg~~fn---~dqL~~w~~RD-EVlAEW~-~~~g~~~L 137 (178)
+...||+|+.|. |.+......-.+=.+|++-.|.-++|...|-..-. .-+++ .+.| -.-.++. +..|.|.+
T Consensus 6 ~~~~Daskv~~~--g~~~~~~~vg~~~~F~V~~~~a~g~l~v~V~~P~g~~~~~~v~--d~~~gty~v~ytP~~~G~h~v 81 (112)
T 2d7p_A 6 SGSDDARRLTVT--SLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVS--ELDSDKHTIRFIPHENGVHSI 81 (112)
T ss_dssp CCSCGGGGCEEC--SSCSBCCCTTCCEEEEEECTTCCSCEEEEEECSSSCBCCCEEC--SCBTTEEEEEECCSSCEEEEE
T ss_pred cCCCCcceeEEe--CCCcCCcccCCcEEEEEEeCCCCCCEEEEEECCCCCeeeeEEE--eCCCCeEEEEEEcCCCEeEEE
Confidence 357899999885 55554444456778999999999999998843111 11333 2333 4566776 35677877
Q ss_pred EEEE
Q 030399 138 HVHC 141 (178)
Q Consensus 138 hVyc 141 (178)
+|.+
T Consensus 82 ~V~~ 85 (112)
T 2d7p_A 82 DVKF 85 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 7
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=25.72 E-value=34 Score=24.86 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=13.1
Q ss_pred hhccccccceEEEEEEecCCee
Q 030399 114 QLRGWYIKDDVVAEWKKVRDDM 135 (178)
Q Consensus 114 qL~~w~~RDEVlAEW~~~~g~~ 135 (178)
+-..|.--|+|+|.| .++.-|
T Consensus 18 ~~~~f~vGd~VlArW-~D~~yY 38 (85)
T 3qii_A 18 GSSEFQINEQVLACW-SDCRFY 38 (85)
T ss_dssp ---CCCTTCEEEEEC-TTSCEE
T ss_pred CCcccccCCEEEEEe-CCCCEe
Confidence 445577789999999 444333
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=23.79 E-value=39 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.1
Q ss_pred cccccceEEEEEEecCC
Q 030399 117 GWYIKDDVVAEWKKVRD 133 (178)
Q Consensus 117 ~w~~RDEVlAEW~~~~g 133 (178)
.|.--|+|+|.| .++.
T Consensus 6 ~~~vGd~vmArW-~D~~ 21 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCR 21 (67)
T ss_dssp CCCTTCEEEEEC-TTSC
T ss_pred ccccCCEEEEEc-CCCC
Confidence 577789999999 4443
No 9
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.92 E-value=43 Score=23.39 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=12.0
Q ss_pred cceEEEEEEecCCeeEEEE
Q 030399 121 KDDVVAEWKKVRDDMCLHV 139 (178)
Q Consensus 121 RDEVlAEW~~~~g~~~LhV 139 (178)
=++|||+|. +|.|+|=-
T Consensus 11 GqdVLarWs--DGlfYlgt 27 (63)
T 2e5q_A 11 GQYVLCRWT--DGLYYLGK 27 (63)
T ss_dssp TCEEEEECT--TSCEEEEE
T ss_pred CCEEEEEec--CCCEEEEE
Confidence 489999995 45565543
No 10
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.20 E-value=2.4e+02 Score=19.94 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCCCCCCCCCcEEEeecCCCCCCCCCCCceeeeccCCc-CcceEEEEehhhhhhhhccccccce-EEEEEE-ecCCeeEE
Q 030399 61 GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF-TANLTLTISNVINLEQLRGWYIKDD-VVAEWK-KVRDDMCL 137 (178)
Q Consensus 61 gpp~~Fnp~KLsV~f~g~~~t~~~PiipRrYTLTHsD~-T~~LfLtIg~~fn~dqL~~w~~RDE-VlAEW~-~~~g~~~L 137 (178)
++....||+|..|. |+|+.....-.++.+|++=.|. .+.|.+.|-..-. .+++--.++|- ....|+ ...|+|.+
T Consensus 4 ~~~~~~d~~~~~v~--G~GL~~~~vg~~~~F~V~t~dag~g~l~v~v~gp~~-~~~~v~d~~dGty~v~Y~p~~~G~y~I 80 (111)
T 2di8_A 4 GSSGIGDARRAKVY--GRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSK-VDIQTEDLEDGTCKVSYFPTVPGVYIV 80 (111)
T ss_dssp CSCCBCCGGGCEEE--ESTTTEEETTCCEEEEEECTTTCBCCEEEEEESSSC-CCEECCBCTTSCEEEEECCCSCSEEEE
T ss_pred cccCCCCCceEEEE--CCCccceEcCCCEEEEEEECCCCCCceEEEEEcCCC-ceEEEEECCCCEEEEEEEeCCCeEEEE
Confidence 34567889998886 6777765566889999998887 7888888853211 11111023342 556665 35688888
Q ss_pred EEEE
Q 030399 138 HVHC 141 (178)
Q Consensus 138 hVyc 141 (178)
+|.+
T Consensus 81 ~V~~ 84 (111)
T 2di8_A 81 STKF 84 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 11
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.05 E-value=1.1e+02 Score=21.65 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=15.5
Q ss_pred cceEEEEEEecCCeeEEEEEEEEe
Q 030399 121 KDDVVAEWKKVRDDMCLHVHCYVS 144 (178)
Q Consensus 121 RDEVlAEW~~~~g~~~LhVyc~Vs 144 (178)
=++|||+|. +|.|+|=--+-|+
T Consensus 13 GqdVLarWs--DGlfYlGtV~kV~ 34 (68)
T 2e5p_A 13 GQDVLARWT--DGLLYLGTIKKVD 34 (68)
T ss_dssp TCEEEEECT--TSSEEEEEEEEEE
T ss_pred CCEEEEEec--CCcEEEeEEEEEe
Confidence 489999996 4667765555554
Done!