Query 030400
Match_columns 178
No_of_seqs 220 out of 1165
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 100.0 4.4E-36 9.6E-41 250.2 16.2 167 10-176 14-182 (357)
2 PLN02758 oxidoreductase, 2OG-F 100.0 4.1E-36 9E-41 250.7 15.3 167 10-176 14-184 (361)
3 PLN02393 leucoanthocyanidin di 100.0 1.5E-34 3.1E-39 241.6 15.3 168 9-176 11-183 (362)
4 PLN03178 leucoanthocyanidin di 100.0 2E-34 4.3E-39 240.7 15.3 168 9-176 4-181 (360)
5 PLN02947 oxidoreductase 100.0 1.1E-33 2.3E-38 237.0 15.6 165 10-176 25-195 (374)
6 PLN02904 oxidoreductase 100.0 3.5E-33 7.7E-38 232.7 16.2 166 10-176 13-181 (357)
7 PLN00417 oxidoreductase, 2OG-F 100.0 4.4E-33 9.5E-38 231.6 16.7 166 10-176 6-175 (348)
8 PLN02515 naringenin,2-oxogluta 100.0 3.9E-33 8.5E-38 232.5 14.9 158 19-176 10-168 (358)
9 PLN02254 gibberellin 3-beta-di 100.0 1.1E-32 2.5E-37 229.7 14.0 150 19-176 25-178 (358)
10 PLN02912 oxidoreductase, 2OG-F 100.0 5.9E-32 1.3E-36 224.8 15.4 161 12-176 7-170 (348)
11 PLN02276 gibberellin 20-oxidas 100.0 7.8E-32 1.7E-36 225.1 14.6 153 22-176 18-179 (361)
12 PLN02704 flavonol synthase 100.0 1.7E-31 3.6E-36 221.2 15.7 161 12-176 5-170 (335)
13 PLN02750 oxidoreductase, 2OG-F 100.0 4.5E-31 9.9E-36 219.4 15.4 152 22-176 2-166 (345)
14 PLN02639 oxidoreductase, 2OG-F 100.0 5.2E-31 1.1E-35 218.5 14.9 157 14-176 3-163 (337)
15 KOG0143 Iron/ascorbate family 100.0 1.6E-29 3.6E-34 207.9 14.0 134 43-176 14-148 (322)
16 PF14226 DIOX_N: non-haem diox 100.0 3.2E-30 6.9E-35 182.9 8.4 108 47-157 1-116 (116)
17 PLN02485 oxidoreductase 100.0 3.3E-29 7.1E-34 207.2 13.7 134 43-176 4-156 (329)
18 PTZ00273 oxidase reductase; Pr 100.0 4.9E-29 1.1E-33 205.4 13.7 133 44-176 3-150 (320)
19 COG3491 PcbC Isopenicillin N s 100.0 3.3E-29 7.2E-34 200.4 12.0 132 44-176 3-147 (322)
20 PLN02997 flavonol synthase 100.0 6.1E-28 1.3E-32 199.0 14.0 125 44-176 30-154 (325)
21 PLN02299 1-aminocyclopropane-1 100.0 9.7E-28 2.1E-32 197.6 13.4 125 44-176 4-128 (321)
22 PLN03002 oxidoreductase, 2OG-F 100.0 1.3E-27 2.7E-32 197.8 14.1 128 44-176 12-153 (332)
23 PLN02156 gibberellin 2-beta-di 99.9 1.3E-26 2.8E-31 191.8 13.5 122 45-176 25-148 (335)
24 PLN02403 aminocyclopropanecarb 99.9 1.2E-26 2.7E-31 189.6 12.5 122 46-176 2-123 (303)
25 PLN03176 flavanone-3-hydroxyla 99.9 2.3E-26 4.9E-31 164.2 12.1 110 13-124 6-116 (120)
26 PLN02365 2-oxoglutarate-depend 99.9 3.7E-24 7.9E-29 175.0 12.4 119 45-176 4-125 (300)
27 PLN02984 oxidoreductase, 2OG-F 99.9 7.8E-24 1.7E-28 175.6 12.5 124 44-176 36-171 (341)
28 PLN03001 oxidoreductase, 2OG-F 99.3 1.5E-12 3.3E-17 104.6 6.4 83 94-176 2-89 (262)
29 PF07350 DUF1479: Protein of u 89.1 0.48 1.1E-05 40.6 3.7 57 43-104 46-102 (416)
30 PRK08130 putative aldolase; Va 76.8 3.9 8.4E-05 31.7 3.9 37 45-85 126-162 (213)
31 PRK08333 L-fuculose phosphate 76.0 3.9 8.4E-05 31.0 3.6 37 45-85 119-155 (184)
32 TIGR02409 carnitine_bodg gamma 68.4 9 0.0002 32.2 4.5 53 44-102 107-159 (366)
33 PRK05874 L-fuculose-phosphate 67.7 7.3 0.00016 30.5 3.5 36 46-85 127-162 (217)
34 PRK06755 hypothetical protein; 65.0 7.8 0.00017 30.2 3.2 36 46-85 136-171 (209)
35 PRK08660 L-fuculose phosphate 64.6 10 0.00023 28.5 3.8 36 45-85 114-149 (181)
36 PRK06833 L-fuculose phosphate 61.2 12 0.00025 29.1 3.6 36 46-85 124-159 (214)
37 PRK08087 L-fuculose phosphate 59.8 10 0.00022 29.4 3.0 36 46-85 122-157 (215)
38 PF00596 Aldolase_II: Class II 58.9 5.1 0.00011 30.1 1.1 37 45-85 122-159 (184)
39 TIGR03328 salvage_mtnB methylt 56.1 17 0.00037 27.7 3.6 35 46-85 126-163 (193)
40 PRK06754 mtnB methylthioribulo 56.0 13 0.00029 28.7 3.1 35 46-85 137-172 (208)
41 PRK05834 hypothetical protein; 55.9 16 0.00034 28.1 3.4 38 46-85 121-160 (194)
42 PRK03634 rhamnulose-1-phosphat 55.3 16 0.00034 29.7 3.5 36 46-85 179-214 (274)
43 cd00398 Aldolase_II Class II A 54.2 12 0.00026 28.8 2.5 39 45-85 121-159 (209)
44 PRK06357 hypothetical protein; 53.6 23 0.0005 27.6 4.1 36 46-85 130-171 (216)
45 COG0159 TrpA Tryptophan syntha 52.4 20 0.00043 29.1 3.6 41 63-105 161-208 (265)
46 COG1402 Uncharacterized protei 52.3 42 0.00092 26.9 5.4 40 63-102 90-132 (250)
47 PF11243 DUF3045: Protein of u 52.2 13 0.00027 24.4 2.0 20 66-85 36-55 (89)
48 PF12368 DUF3650: Protein of u 52.1 7.6 0.00016 20.2 0.8 17 78-94 9-25 (28)
49 TIGR01086 fucA L-fuculose phos 51.7 13 0.00029 28.8 2.5 36 46-85 121-156 (214)
50 TIGR02624 rhamnu_1P_ald rhamnu 51.2 18 0.00039 29.3 3.2 36 46-85 177-212 (270)
51 PF03460 NIR_SIR_ferr: Nitrite 50.5 26 0.00055 21.6 3.3 38 62-99 23-68 (69)
52 PRK06661 hypothetical protein; 49.2 22 0.00048 28.0 3.4 23 63-85 138-160 (231)
53 cd00379 Ribosomal_L10_P0 Ribos 48.8 67 0.0014 23.1 5.7 38 62-99 4-42 (155)
54 TIGR02410 carnitine_TMLD trime 47.9 30 0.00065 29.1 4.2 51 46-101 100-150 (362)
55 PF01471 PG_binding_1: Putativ 47.6 41 0.0009 19.7 3.8 41 64-104 4-44 (57)
56 PRK06557 L-ribulose-5-phosphat 45.5 21 0.00046 27.7 2.8 36 46-85 130-167 (221)
57 PRK09553 tauD taurine dioxygen 44.0 49 0.0011 26.6 4.8 53 44-103 13-65 (277)
58 PF03668 ATP_bind_2: P-loop AT 43.2 38 0.00082 27.8 3.9 28 69-98 18-45 (284)
59 COG0289 DapB Dihydrodipicolina 42.8 73 0.0016 25.9 5.4 38 65-102 108-145 (266)
60 PRK09220 methylthioribulose-1- 42.6 41 0.00088 25.9 3.9 24 62-85 145-171 (204)
61 PRK15331 chaperone protein Sic 42.4 31 0.00067 25.9 3.0 41 62-103 10-50 (165)
62 PF01113 DapB_N: Dihydrodipico 40.9 57 0.0012 22.8 4.2 44 49-99 71-115 (124)
63 cd05797 Ribosomal_L10 Ribosoma 39.4 1.1E+02 0.0025 22.1 5.7 38 62-99 6-44 (157)
64 PF08823 PG_binding_2: Putativ 38.6 73 0.0016 20.5 4.0 34 63-96 16-49 (74)
65 cd05796 Ribosomal_P0_like Ribo 38.4 83 0.0018 23.3 4.9 38 62-99 4-42 (163)
66 PF11848 DUF3368: Domain of un 36.4 70 0.0015 18.5 3.4 27 65-97 21-47 (48)
67 cd05795 Ribosomal_P0_L10e Ribo 36.2 1.1E+02 0.0023 23.0 5.2 37 63-99 5-42 (175)
68 PF02668 TauD: Taurine catabol 36.1 78 0.0017 24.4 4.7 35 63-100 24-58 (258)
69 PRK00099 rplJ 50S ribosomal pr 34.9 1.5E+02 0.0032 22.0 5.8 38 62-99 7-45 (172)
70 COG0244 RplJ Ribosomal protein 33.6 1.5E+02 0.0033 22.3 5.7 38 62-99 9-47 (175)
71 PRK08193 araD L-ribulose-5-pho 32.8 80 0.0017 24.8 4.2 40 46-85 124-172 (231)
72 PRK04019 rplP0 acidic ribosoma 32.5 1.2E+02 0.0027 25.2 5.4 38 62-99 9-47 (330)
73 COG5488 Integral membrane prot 31.3 52 0.0011 24.4 2.6 26 49-74 136-161 (164)
74 PRK07044 aldolase II superfami 31.3 68 0.0015 25.5 3.6 37 46-85 138-174 (252)
75 PRK06208 hypothetical protein; 30.7 50 0.0011 26.8 2.8 24 62-85 177-200 (274)
76 PRK06486 hypothetical protein; 30.6 49 0.0011 26.6 2.7 24 62-85 162-185 (262)
77 PF07283 TrbH: Conjugal transf 30.2 52 0.0011 23.4 2.5 24 63-86 36-59 (121)
78 TIGR02408 ectoine_ThpD ectoine 30.1 1.1E+02 0.0024 24.5 4.7 38 65-103 18-55 (277)
79 PRK04516 minC septum formation 29.1 1.4E+02 0.0031 23.7 5.0 47 44-92 44-91 (235)
80 PRK07490 hypothetical protein; 28.8 56 0.0012 25.9 2.7 24 62-85 146-169 (245)
81 COG4185 Uncharacterized protei 27.6 1.6E+02 0.0035 22.4 4.7 18 65-82 83-100 (187)
82 TIGR03677 rpl7ae 50S ribosomal 26.8 2.1E+02 0.0044 20.0 5.1 47 44-100 67-116 (117)
83 PF00586 AIRS: AIR synthase re 26.5 77 0.0017 20.8 2.7 21 63-83 75-95 (96)
84 PF11043 DUF2856: Protein of u 26.4 98 0.0021 20.4 3.0 24 87-110 20-43 (97)
85 PRK04596 minC septum formation 24.4 1.4E+02 0.0031 24.0 4.2 51 44-95 48-99 (248)
86 PRK11460 putative hydrolase; P 24.3 2.2E+02 0.0047 22.0 5.3 39 63-101 165-209 (232)
87 PRK13883 conjugal transfer pro 23.8 87 0.0019 23.2 2.8 33 49-85 54-86 (151)
88 PRK13835 conjugal transfer pro 23.7 86 0.0019 23.1 2.6 29 49-82 60-88 (145)
89 PF09440 eIF3_N: eIF3 subunit 23.6 59 0.0013 23.4 1.8 18 81-98 114-131 (133)
90 PLN02452 phosphoserine transam 23.1 1.3E+02 0.0028 25.4 4.0 37 64-100 312-360 (365)
91 TIGR02130 dapB_plant dihydrodi 23.0 2.4E+02 0.0051 23.1 5.4 37 65-102 108-144 (275)
92 PRK00115 hemE uroporphyrinogen 22.9 1.8E+02 0.004 24.1 4.9 37 64-100 304-344 (346)
93 PRK12462 phosphoserine aminotr 22.9 1.6E+02 0.0034 25.0 4.5 38 63-100 310-359 (364)
94 PF13376 OmdA: Bacteriocin-pro 22.5 1.2E+02 0.0025 18.5 2.8 30 82-111 3-35 (63)
95 PLN02433 uroporphyrinogen deca 22.2 2E+02 0.0042 23.9 4.9 38 64-101 297-338 (345)
96 cd04367 IlGF_insulin_like IlGF 22.1 63 0.0014 21.2 1.5 24 62-85 8-31 (79)
97 TIGR01463 mtaA_cmuA methyltran 21.8 1.5E+02 0.0033 24.4 4.2 39 62-100 296-338 (340)
98 KOG0524 Pyruvate dehydrogenase 21.8 3.5E+02 0.0076 22.4 6.0 55 47-106 265-324 (359)
99 cd00580 CHMI 5-carboxymethyl-2 21.7 1.3E+02 0.0027 20.7 3.2 30 49-78 4-34 (113)
100 PF10044 Ret_tiss: Retinal tis 21.7 67 0.0015 21.8 1.7 16 150-165 11-26 (95)
101 COG3113 Predicted NTP binding 21.5 2E+02 0.0043 19.7 3.9 44 46-90 40-84 (99)
102 PF13309 HTH_22: HTH domain 21.3 88 0.0019 19.3 2.1 20 64-83 25-44 (64)
103 cd00465 URO-D_CIMS_like The UR 21.3 1.9E+02 0.0041 23.2 4.6 37 62-98 261-305 (306)
104 KOG4513 Phosphoglycerate mutas 21.1 1E+02 0.0022 26.7 2.9 24 63-86 436-461 (531)
105 COG2450 Uncharacterized conser 20.6 1.4E+02 0.0031 21.3 3.2 33 46-78 65-98 (124)
106 PF14133 DUF4300: Domain of un 20.2 1.7E+02 0.0038 23.5 4.0 30 65-102 12-41 (250)
No 1
>PLN02216 protein SRG1
Probab=100.00 E-value=4.4e-36 Score=250.24 Aligned_cols=167 Identities=62% Similarity=1.051 Sum_probs=138.8
Q ss_pred chhHHHHHhC-CCCCCCCCccCCCCCCCCCC-CCCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCH
Q 030400 10 VPCVQELVKN-PMLVVPPRYIRPDQDSPINS-DDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSS 87 (178)
Q Consensus 10 ~~~~~~l~~~-~~~~~p~~~v~p~~~~~~~~-~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~ 87 (178)
++.|+.|+.+ ++..||+.|++|.++++.+. .......||||||+.+.+++.+++++++|++||++||||||+||||+.
T Consensus 14 ~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~ 93 (357)
T PLN02216 14 VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDS 93 (357)
T ss_pred chhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCH
Confidence 4668999876 78999999999999987531 111225799999999876554456889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHH
Q 030400 88 AFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFV 167 (178)
Q Consensus 88 ~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~ 167 (178)
++++++++++++||+||.|+|+++...++..+||+........+..||+|.|++...|.....+|.||+.+++||+++++
T Consensus 94 ~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~ 173 (357)
T PLN02216 94 SFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLET 173 (357)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHH
Confidence 99999999999999999999999976555678997654433455679999998876665556789999988999999999
Q ss_pred HHHHHhhhh
Q 030400 168 LDMDLQTKR 176 (178)
Q Consensus 168 y~~~~~~~~ 176 (178)
|+.+|.+|.
T Consensus 174 y~~~~~~l~ 182 (357)
T PLN02216 174 YSAEVKSIA 182 (357)
T ss_pred HHHHHHHHH
Confidence 999999875
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.1e-36 Score=250.74 Aligned_cols=167 Identities=41% Similarity=0.704 Sum_probs=138.3
Q ss_pred chhHHHHHhCCCCCCCCCccCCCCCCCCCC--CCCCCCCCceeecCCCCCCcch--HHHHHHHHHHHHhcceEEEecCCC
Q 030400 10 VPCVQELVKNPMLVVPPRYIRPDQDSPINS--DDTLISQIPVIDMQSLLSEESM--DSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~--~~~~~~~iPvIDls~l~~~~~~--~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.+.|+.|+++|...||+.|++|.++++... ......+||||||+.+.+++.. ++++++|++||++||||||+||||
T Consensus 14 ~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi 93 (361)
T PLN02758 14 IDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGI 93 (361)
T ss_pred cccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCC
Confidence 345899999999999999999999987532 1124567999999998755432 346899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHH
Q 030400 86 SSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSL 165 (178)
Q Consensus 86 ~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~ 165 (178)
+.++++++++++++||+||.|+|+++...++..+||+...........||+|.|.++..|.....+|.||+.+++||+++
T Consensus 94 ~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~ 173 (361)
T PLN02758 94 ELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETL 173 (361)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHHHHH
Confidence 99999999999999999999999999765556789976543334556799999998866644456899999889999999
Q ss_pred HHHHHHHhhhh
Q 030400 166 FVLDMDLQTKR 176 (178)
Q Consensus 166 ~~y~~~~~~~~ 176 (178)
++|+++|.++.
T Consensus 174 ~~y~~~~~~l~ 184 (361)
T PLN02758 174 EVYSREIRELC 184 (361)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 3
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=1.5e-34 Score=241.61 Aligned_cols=168 Identities=33% Similarity=0.651 Sum_probs=137.4
Q ss_pred cchhHHHHHhCCCCCCCCCccCCCCCCCCCC---CCCCCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEecC
Q 030400 9 LVPCVQELVKNPMLVVPPRYIRPDQDSPINS---DDTLISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLVNH 83 (178)
Q Consensus 9 ~~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~---~~~~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~nH 83 (178)
+.+.|+.|+..+...||+.|++|.++++... .......||+|||+.+.+++. +.+++++|.+||++||||||+||
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nH 90 (362)
T PLN02393 11 PIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNH 90 (362)
T ss_pred ccchHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeC
Confidence 4556999988889999999999999987431 112456899999999876542 35688999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHH
Q 030400 84 GVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRF 163 (178)
Q Consensus 84 GI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~ 163 (178)
||+.++++++++++++||+||.|+|+++...+..++||+...........||+|.|+++..|.....+|.||+.+++||+
T Consensus 91 GI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~ 170 (362)
T PLN02393 91 GVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRE 170 (362)
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccccccccccccccccCchhheeeeecCccccchhhCcccchHHHH
Confidence 99999999999999999999999999997655567899533222223567999998877555444568999998899999
Q ss_pred HHHHHHHHHhhhh
Q 030400 164 SLFVLDMDLQTKR 176 (178)
Q Consensus 164 ~~~~y~~~~~~~~ 176 (178)
++++|+++|.++.
T Consensus 171 ~~~~y~~~~~~la 183 (362)
T PLN02393 171 LIEEYGEEVVKLC 183 (362)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 4
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=2e-34 Score=240.69 Aligned_cols=168 Identities=31% Similarity=0.618 Sum_probs=136.6
Q ss_pred cchhHHHHHhCCCCCCCCCccCCCCCCCCCCC------CCCCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEE
Q 030400 9 LVPCVQELVKNPMLVVPPRYIRPDQDSPINSD------DTLISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQL 80 (178)
Q Consensus 9 ~~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~~------~~~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l 80 (178)
+++.|+.|+.++...||+.|++|.++++.... ......||||||+.+.+++. +++++++|++||++||||||
T Consensus 4 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l 83 (360)
T PLN03178 4 AVPRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHL 83 (360)
T ss_pred hhhhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEE
Confidence 35669999998899999999999998864321 12345799999999876553 45688999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCc
Q 030400 81 VNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLP 158 (178)
Q Consensus 81 ~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~ 158 (178)
+||||+.++++++++++++||+||.|+|+++.... +.++||+........+..||+|.+.+...|.....+|.||+.+
T Consensus 84 ~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~ 163 (360)
T PLN03178 84 VGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTP 163 (360)
T ss_pred EcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCc
Confidence 99999999999999999999999999999997643 3578996543323345578999877654454445689999989
Q ss_pred cchHHHHHHHHHHHhhhh
Q 030400 159 PLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 159 ~~fr~~~~~y~~~~~~~~ 176 (178)
|+||+++++|+++|.++.
T Consensus 164 p~fr~~~~~y~~~~~~l~ 181 (360)
T PLN03178 164 PDYVPATSEYSRSLRSLA 181 (360)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 5
>PLN02947 oxidoreductase
Probab=100.00 E-value=1.1e-33 Score=236.98 Aligned_cols=165 Identities=28% Similarity=0.456 Sum_probs=132.7
Q ss_pred chhHHHHHhCCCCCCCCCccCCCCCCCCCCC---C--CCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCC
Q 030400 10 VPCVQELVKNPMLVVPPRYIRPDQDSPINSD---D--TLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHG 84 (178)
Q Consensus 10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~~---~--~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHG 84 (178)
..+||.|+.+|...||+.|++|.++++.... + ....+||||||+.+.+ ..+.+++++|++||++||||||+|||
T Consensus 25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~-~~~~~~~~~l~~Ac~~~GFF~v~nHG 103 (374)
T PLN02947 25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG-SNRPHVLATLAAACREYGFFQVVNHG 103 (374)
T ss_pred ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC-ccHHHHHHHHHHHHHHCcEEEEEcCC
Confidence 4569999999999999999999999875311 0 1345799999998864 23456889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHhhcccCC-CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHH
Q 030400 85 VSSAFLEKLKKEVQGFFNLSMEEKKKYWQHP-GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRF 163 (178)
Q Consensus 85 I~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~ 163 (178)
|+.++++++++.+++||+||.|+|+++.... ....||+...........+|+|.+.+...|.. ..+|.||+.+++||+
T Consensus 104 Ip~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~-~~~~~WP~~~~~fr~ 182 (374)
T PLN02947 104 VPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLS-DVLPHWPSSPADLRK 182 (374)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcc-cccccCccchHHHHH
Confidence 9999999999999999999999999985432 23457765433233456799999887655532 236899998899999
Q ss_pred HHHHHHHHHhhhh
Q 030400 164 SLFVLDMDLQTKR 176 (178)
Q Consensus 164 ~~~~y~~~~~~~~ 176 (178)
++++|+++|.+|.
T Consensus 183 ~~~~Y~~~~~~L~ 195 (374)
T PLN02947 183 VAATYAKATKRLF 195 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 6
>PLN02904 oxidoreductase
Probab=100.00 E-value=3.5e-33 Score=232.74 Aligned_cols=166 Identities=23% Similarity=0.424 Sum_probs=130.6
Q ss_pred chhHHHHHhCCCCCCCCCccCCCCCCCCCC-C-CCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCH
Q 030400 10 VPCVQELVKNPMLVVPPRYIRPDQDSPINS-D-DTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSS 87 (178)
Q Consensus 10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~-~-~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~ 87 (178)
..+|+.|+.+|...||+.|++|.++++... . ......||+|||+.+.+++.+++++++|++||++||||||+||||+.
T Consensus 13 ~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~ 92 (357)
T PLN02904 13 FTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPS 92 (357)
T ss_pred ccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCH
Confidence 567999999999999999999999987541 1 11235799999998865444456889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhcccCC-CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHH
Q 030400 88 AFLEKLKKEVQGFFNLSMEEKKKYWQHP-GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLF 166 (178)
Q Consensus 88 ~~~~~~~~~a~~FF~lp~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~ 166 (178)
++++++++++++||+||.|+|+++.... ....||+...........+|+|.+.....|.. ..+|.||+.+|+||++++
T Consensus 93 ~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~-~~~n~WP~~~p~fr~~~~ 171 (357)
T PLN02904 93 SVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLS-KWINLWPSNPPCYKEKVG 171 (357)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcc-cccccCcccchHHHHHHH
Confidence 9999999999999999999999986532 23346654322222344589887765433431 247999998899999999
Q ss_pred HHHHHHhhhh
Q 030400 167 VLDMDLQTKR 176 (178)
Q Consensus 167 ~y~~~~~~~~ 176 (178)
+|+++|.++.
T Consensus 172 ~y~~~~~~l~ 181 (357)
T PLN02904 172 KYAEATHVLH 181 (357)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 7
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.4e-33 Score=231.56 Aligned_cols=166 Identities=33% Similarity=0.539 Sum_probs=132.6
Q ss_pred chhHHHHHhCCCCCCCCCccCCCCCCCC--C-CCCCCCCCCceeecCCCCCCcc-hHHHHHHHHHHHHhcceEEEecCCC
Q 030400 10 VPCVQELVKNPMLVVPPRYIRPDQDSPI--N-SDDTLISQIPVIDMQSLLSEES-MDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~--~-~~~~~~~~iPvIDls~l~~~~~-~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.+.|+++++++ ..||+.|++|++.++. . ........||||||+.+.+++. +++.+++|++||++||||||+||||
T Consensus 6 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 84 (348)
T PLN00417 6 FKTVQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGI 84 (348)
T ss_pred chhHHHHHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCC
Confidence 56799999877 5899999999988531 1 1112346899999998876543 3345789999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHH
Q 030400 86 SSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSL 165 (178)
Q Consensus 86 ~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~ 165 (178)
+.++++++++++++||+||.|+|+++....+.++||+...........||+|.++++..|.....+|.||+.+++||+++
T Consensus 85 ~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~ 164 (348)
T PLN00417 85 TEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETL 164 (348)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccccccccccccCCCcCccceeecccCCcccccccccccccHHHHHHH
Confidence 99999999999999999999999999765555789976432223456799998877655543345799999889999999
Q ss_pred HHHHHHHhhhh
Q 030400 166 FVLDMDLQTKR 176 (178)
Q Consensus 166 ~~y~~~~~~~~ 176 (178)
++|+.+|.++.
T Consensus 165 ~~y~~~~~~l~ 175 (348)
T PLN00417 165 HEYTMKQRLVI 175 (348)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 8
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=3.9e-33 Score=232.45 Aligned_cols=158 Identities=23% Similarity=0.410 Sum_probs=125.2
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCceeecCCCCCCcc-hHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHH
Q 030400 19 NPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEES-MDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEV 97 (178)
Q Consensus 19 ~~~~~~p~~~v~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~-~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a 97 (178)
++...||..|+++..+++..........||||||+.+.+++. +.+++++|++||++||||||+||||+.++++++++++
T Consensus 10 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~ 89 (358)
T PLN02515 10 AGESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLA 89 (358)
T ss_pred cCCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456799999999998887432111234699999999864332 4468899999999999999999999999999999999
Q ss_pred HHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 98 QGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 98 ~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
++||+||.|+|+++.......+||............||+|.|.+...|.....+|.||+.+++||+++++|+++|.+|.
T Consensus 90 ~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~ 168 (358)
T PLN02515 90 RDFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLA 168 (358)
T ss_pred HHHhcCCHHHHhhhCcCCCCccCcccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999876544457996432222344679999997654443334579999988999999999999999875
No 9
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.1e-32 Score=229.70 Aligned_cols=150 Identities=23% Similarity=0.438 Sum_probs=122.3
Q ss_pred CCCCCCCCCccCCCCCC--CCCC--CCCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHH
Q 030400 19 NPMLVVPPRYIRPDQDS--PINS--DDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLK 94 (178)
Q Consensus 19 ~~~~~~p~~~v~p~~~~--~~~~--~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~ 94 (178)
++...||++|++|.+++ +... .......||||||+.. .++++|++||++||||||+||||+.+++++++
T Consensus 25 ~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~-------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~ 97 (358)
T PLN02254 25 TSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP-------NALTLIGHACETWGVFQVTNHGIPLSLLDDIE 97 (358)
T ss_pred hhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH-------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHH
Confidence 34467999999999988 3221 1123457999999742 36899999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhh
Q 030400 95 KEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQT 174 (178)
Q Consensus 95 ~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~ 174 (178)
+++++||+||.|+|+++......++||+.........+.||+|.|.+...|. ...+|.||+.+++||+++++|+++|.+
T Consensus 98 ~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~-~~~~~~wP~~~~~fr~~~~~Y~~~~~~ 176 (358)
T PLN02254 98 SQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPL-EHARQLWPQDHTKFCDVMEEYQKEMKK 176 (358)
T ss_pred HHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCcc-ccchhhCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999876655678998755433345679999999876553 235799999899999999999999998
Q ss_pred hh
Q 030400 175 KR 176 (178)
Q Consensus 175 ~~ 176 (178)
|.
T Consensus 177 L~ 178 (358)
T PLN02254 177 LA 178 (358)
T ss_pred HH
Confidence 75
No 10
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.98 E-value=5.9e-32 Score=224.81 Aligned_cols=161 Identities=25% Similarity=0.416 Sum_probs=125.0
Q ss_pred hHHHHHhCCCCCCCCCccCCCCCCCCCCC-CCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHH
Q 030400 12 CVQELVKNPMLVVPPRYIRPDQDSPINSD-DTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFL 90 (178)
Q Consensus 12 ~~~~l~~~~~~~~p~~~v~p~~~~~~~~~-~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~ 90 (178)
.||+|. +++..||+.|++|.++++.... ..+..+||+|||+.+.+++ +++++++|++||++||||||+||||+.+++
T Consensus 7 ~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~ 84 (348)
T PLN02912 7 LVSDIA-SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPN-RADIINQFAHACSSYGFFQIKNHGVPEETI 84 (348)
T ss_pred HHHHHh-cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcC-HHHHHHHHHHHHHHCCEEEEEeCCCCHHHH
Confidence 467776 7889999999999988874221 1234679999999986544 456889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHhhccc-CCCC-ccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHH
Q 030400 91 EKLKKEVQGFFNLSMEEKKKYWQ-HPGD-VEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVL 168 (178)
Q Consensus 91 ~~~~~~a~~FF~lp~e~K~~~~~-~~~~-~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y 168 (178)
+++++++++||+||.|+|+++.. .... .+||... ........||+|.+.+...|.. ..+|.||+.+++||+++++|
T Consensus 85 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~-~~~n~wP~~~~~fr~~~~~y 162 (348)
T PLN02912 85 KKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSF-NVSKEKVSNWRDFLRLHCYPIE-DFIEEWPSTPISFREVTAEY 162 (348)
T ss_pred HHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccc-cccccccCCchheEEEeecCcc-cccccCcchhHHHHHHHHHH
Confidence 99999999999999999999543 2222 2333322 1222345799999887644431 24799999889999999999
Q ss_pred HHHHhhhh
Q 030400 169 DMDLQTKR 176 (178)
Q Consensus 169 ~~~~~~~~ 176 (178)
+++|.++.
T Consensus 163 ~~~~~~l~ 170 (348)
T PLN02912 163 ATSVRALV 170 (348)
T ss_pred HHHHHHHH
Confidence 99999875
No 11
>PLN02276 gibberellin 20-oxidase
Probab=99.98 E-value=7.8e-32 Score=225.11 Aligned_cols=153 Identities=23% Similarity=0.370 Sum_probs=124.2
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHH
Q 030400 22 LVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 22 ~~~p~~~v~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~ 99 (178)
..||+.|++|.++++.+. ....+||||||+.+.+++. +++++++|++||++||||||+||||+.++++++++++++
T Consensus 18 ~~vp~~~~~~~~~~p~~~--~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~ 95 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSAA--VPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDA 95 (361)
T ss_pred CCCCHHhcCCccccCCCC--CcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 579999999998887531 2346799999999875543 345889999999999999999999999999999999999
Q ss_pred HhcCCHHHHhhcccCCCCccccccccccccccCCCccccccceeCCCC-------CCCCCCCCCCccchHHHHHHHHHHH
Q 030400 100 FFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVH-------LRKPHLFPKLPPLLRFSLFVLDMDL 172 (178)
Q Consensus 100 FF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~-------~~~~n~wP~~~~~fr~~~~~y~~~~ 172 (178)
||+||.|+|+++....+..+||............||+|.|.++..+.. ...+|.||...++||+++++|+.+|
T Consensus 96 FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~ 175 (361)
T PLN02276 96 FFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAM 175 (361)
T ss_pred HHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHH
Confidence 999999999998765556789987544333456799999998754321 1235788877789999999999999
Q ss_pred hhhh
Q 030400 173 QTKR 176 (178)
Q Consensus 173 ~~~~ 176 (178)
.++.
T Consensus 176 ~~l~ 179 (361)
T PLN02276 176 KTLS 179 (361)
T ss_pred HHHH
Confidence 9875
No 12
>PLN02704 flavonol synthase
Probab=99.98 E-value=1.7e-31 Score=221.22 Aligned_cols=161 Identities=29% Similarity=0.480 Sum_probs=128.2
Q ss_pred hHHHHHhCC--CCCCCCCccCCCCCCCCCCC-CCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHH
Q 030400 12 CVQELVKNP--MLVVPPRYIRPDQDSPINSD-DTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSA 88 (178)
Q Consensus 12 ~~~~l~~~~--~~~~p~~~v~p~~~~~~~~~-~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~ 88 (178)
+|+.++.++ ..+||+.|++|..++|.+.. .....+||||||+.. + +++++++|++||++||||||+||||+.+
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~---~-~~~~~~~l~~Ac~~~GFf~l~nHGI~~~ 80 (335)
T PLN02704 5 RVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP---D-EEKLTRLIAEASKEWGMFQIVNHGIPSE 80 (335)
T ss_pred hHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc---c-HHHHHHHHHHHHHHcCEEEEEcCCCCHH
Confidence 578887765 78999999999999876421 224567999999963 2 3457899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHH
Q 030400 89 FLEKLKKEVQGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLF 166 (178)
Q Consensus 89 ~~~~~~~~a~~FF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~ 166 (178)
+++++++++++||+||.|+|+++.... ..++||+...........+|+|.+.....|.....+|.||+.+|+||++++
T Consensus 81 l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~ 160 (335)
T PLN02704 81 VISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNE 160 (335)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccccchhHHHHH
Confidence 999999999999999999999987642 346899765433334566888877654334323346899998899999999
Q ss_pred HHHHHHhhhh
Q 030400 167 VLDMDLQTKR 176 (178)
Q Consensus 167 ~y~~~~~~~~ 176 (178)
+|+++|.++.
T Consensus 161 ~y~~~~~~l~ 170 (335)
T PLN02704 161 EYAKYLRGVA 170 (335)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 13
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=4.5e-31 Score=219.42 Aligned_cols=152 Identities=25% Similarity=0.455 Sum_probs=120.0
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHh
Q 030400 22 LVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFF 101 (178)
Q Consensus 22 ~~~p~~~v~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF 101 (178)
..+|..|++|.++++..........||||||+.+.+ ..+.+++++|++||++||||||+||||+.++++++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF 80 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVSTS-HDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFF 80 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCCc-ccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 478999999998887532111245799999998632 2345688999999999999999999999999999999999999
Q ss_pred cCCHHHHhhcccCCCCccccccccccccccCCCccccccceeC-----CC-----C---CCCCCCCCCCccchHHHHHHH
Q 030400 102 NLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITL-----PV-----H---LRKPHLFPKLPPLLRFSLFVL 168 (178)
Q Consensus 102 ~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~-----p~-----~---~~~~n~wP~~~~~fr~~~~~y 168 (178)
+||.|+|+++.......+||.... ......||+|.|.++.. |. . ...+|.||+.+++||+++++|
T Consensus 81 ~LP~eeK~~~~~~~~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y 158 (345)
T PLN02750 81 DQTTEEKRKVKRDEVNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEY 158 (345)
T ss_pred cCCHHHHHhhccCCCCccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHH
Confidence 999999999866544457996432 12345699999988642 10 0 013799999889999999999
Q ss_pred HHHHhhhh
Q 030400 169 DMDLQTKR 176 (178)
Q Consensus 169 ~~~~~~~~ 176 (178)
++.|.+|.
T Consensus 159 ~~~~~~l~ 166 (345)
T PLN02750 159 ARQVEKLA 166 (345)
T ss_pred HHHHHHHH
Confidence 99999875
No 14
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=5.2e-31 Score=218.45 Aligned_cols=157 Identities=26% Similarity=0.502 Sum_probs=122.0
Q ss_pred HHHHhCCC--CCCCCCccCCCCCCCCCCCCCCCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHH
Q 030400 14 QELVKNPM--LVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLE 91 (178)
Q Consensus 14 ~~l~~~~~--~~~p~~~v~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~ 91 (178)
+.|+++|+ ..||+.|+++.++++..........||||||+.. .+++++++|.+||++||||||+||||+.++++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~----~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~ 78 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSP----DRAQVVQQIGDACRRYGFFQVINHGVSAELVE 78 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCc----cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHH
Confidence 45788876 8999999999988874221223467999999963 24568999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHhhcccC-CC-CccccccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHH
Q 030400 92 KLKKEVQGFFNLSMEEKKKYWQH-PG-DVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLD 169 (178)
Q Consensus 92 ~~~~~a~~FF~lp~e~K~~~~~~-~~-~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~ 169 (178)
++++++++||+||.|+|+++... .. ...+|... ........+|+|.+.+...|.. ..+|.||+.+++||+++++|+
T Consensus 79 ~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~p~~-~~~n~wP~~~~~fr~~~~~y~ 156 (337)
T PLN02639 79 KMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSF-NVRKEKVHNWRDYLRLHCYPLD-KYVPEWPSNPPSFKEIVSTYC 156 (337)
T ss_pred HHHHHHHHHhcCCHHHHhhhhccCCCCcccccccc-ccccCcccCchheEEeeecCCc-ccchhCcccchHHHHHHHHHH
Confidence 99999999999999999997543 22 22223222 1122345689999887655532 246899998899999999999
Q ss_pred HHHhhhh
Q 030400 170 MDLQTKR 176 (178)
Q Consensus 170 ~~~~~~~ 176 (178)
++|.++.
T Consensus 157 ~~~~~l~ 163 (337)
T PLN02639 157 REVRELG 163 (337)
T ss_pred HHHHHHH
Confidence 9999874
No 15
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=207.90 Aligned_cols=134 Identities=36% Similarity=0.692 Sum_probs=114.8
Q ss_pred CCCCCceeecCCCCCCcc-hHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCcccc
Q 030400 43 LISQIPVIDMQSLLSEES-MDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGF 121 (178)
Q Consensus 43 ~~~~iPvIDls~l~~~~~-~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY 121 (178)
....||+|||+.+.+.+. +.+++++|++||++||||||+|||||.++++++++.+++||+||.|+|+++........||
T Consensus 14 ~~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY 93 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGY 93 (322)
T ss_pred cCCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcccc
Confidence 356799999998765442 4567899999999999999999999999999999999999999999999998765567899
Q ss_pred ccccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 122 GQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 122 ~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
+...........+|.+.+.+...|.....++.||+.++.||++|++|.++|.+|.
T Consensus 94 ~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~ 148 (322)
T KOG0143|consen 94 GTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELS 148 (322)
T ss_pred cccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHH
Confidence 8776544446789999998776665446789999999999999999999999875
No 16
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.96 E-value=3.2e-30 Score=182.92 Aligned_cols=108 Identities=33% Similarity=0.656 Sum_probs=87.6
Q ss_pred CceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccccc
Q 030400 47 IPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAFV 126 (178)
Q Consensus 47 iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~~ 126 (178)
||||||+. ....+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ..++||.+...
T Consensus 1 iPvIDls~--~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~~~ 77 (116)
T PF14226_consen 1 IPVIDLSP--DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS-PSYRGYSPPGS 77 (116)
T ss_dssp --EEEHGG--CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC-TTCSEEEESEE
T ss_pred CCeEECCC--CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC-CCCcccccCCc
Confidence 79999997 2333556899999999999999999999999999999999999999999999999553 57899998765
Q ss_pred ccccc-CCCccccccceeC-CCC------CCCCCCCCCC
Q 030400 127 VSEEQ-KLDWADIFSMITL-PVH------LRKPHLFPKL 157 (178)
Q Consensus 127 ~~~~~-~~d~~E~~~~~~~-p~~------~~~~n~wP~~ 157 (178)
..... ..||+|+|+++.. |.. ..++|+||++
T Consensus 78 ~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 78 ESTDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp ECCTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred cccCCCCCCceEEeEEECCCCccccccccccCCCCCCCC
Confidence 54444 8899999999976 322 4789999973
No 17
>PLN02485 oxidoreductase
Probab=99.96 E-value=3.3e-29 Score=207.16 Aligned_cols=134 Identities=24% Similarity=0.393 Sum_probs=108.7
Q ss_pred CCCCCceeecCCCCCC--c-------chHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhccc
Q 030400 43 LISQIPVIDMQSLLSE--E-------SMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQ 113 (178)
Q Consensus 43 ~~~~iPvIDls~l~~~--~-------~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~ 113 (178)
++..||||||+.+.++ + .+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++..
T Consensus 4 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~ 83 (329)
T PLN02485 4 DFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKM 83 (329)
T ss_pred CCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcc
Confidence 4678999999988532 1 134578999999999999999999999999999999999999999999999865
Q ss_pred CC-CCccccccccccccccCCCccccccceeC--CC-------CCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 114 HP-GDVEGFGQAFVVSEEQKLDWADIFSMITL--PV-------HLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 114 ~~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~--p~-------~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
.. ...+||.........+..||+|.|.+... +. ....+|.||+.+|+||+++++|+++|.++.
T Consensus 84 ~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~ 156 (329)
T PLN02485 84 TPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLS 156 (329)
T ss_pred cCCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 43 45689976543333456799999887642 11 124689999988999999999999999875
No 18
>PTZ00273 oxidase reductase; Provisional
Probab=99.96 E-value=4.9e-29 Score=205.42 Aligned_cols=133 Identities=29% Similarity=0.403 Sum_probs=109.2
Q ss_pred CCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccC-CCCccc
Q 030400 44 ISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQH-PGDVEG 120 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~-~~~~~G 120 (178)
...||||||+.+.+++. +++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ....+|
T Consensus 3 ~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~G 82 (320)
T PTZ00273 3 RASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRG 82 (320)
T ss_pred CCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCC
Confidence 46799999999876543 345789999999999999999999999999999999999999999999998654 345789
Q ss_pred cccccccc--cccCCCccccccceeC-CC---------CCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 121 FGQAFVVS--EEQKLDWADIFSMITL-PV---------HLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 121 Y~~~~~~~--~~~~~d~~E~~~~~~~-p~---------~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
|.+..... .....||+|.|.++.. |. ...++|.||+.+|+||+++++|+++|.++.
T Consensus 83 Y~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~ 150 (320)
T PTZ00273 83 YGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALA 150 (320)
T ss_pred CCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 98654322 2345699999998742 21 124589999988999999999999998875
No 19
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=200.37 Aligned_cols=132 Identities=27% Similarity=0.393 Sum_probs=113.6
Q ss_pred CCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC-CCccc
Q 030400 44 ISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHP-GDVEG 120 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~-~~~~G 120 (178)
...||+|||+.+..++. +++++++|++||++||||||+||||+..+++++++++++||+||.|+|+++.+.. ..++|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 46799999999876543 4568999999999999999999999999999999999999999999999998764 36899
Q ss_pred cccccccccccCCCccccccceeC-C-------C--CCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 121 FGQAFVVSEEQKLDWADIFSMITL-P-------V--HLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 121 Y~~~~~~~~~~~~d~~E~~~~~~~-p-------~--~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
|.....+...+..||+|.++++.+ + . ..++||+|| .+|+||+.+..|+++|.+..
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~ 147 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVG 147 (322)
T ss_pred cccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHH
Confidence 998776656666799999999863 1 1 356899999 88999999999999998753
No 20
>PLN02997 flavonol synthase
Probab=99.95 E-value=6.1e-28 Score=199.03 Aligned_cols=125 Identities=24% Similarity=0.417 Sum_probs=104.1
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCcccccc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQ 123 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~ 123 (178)
...||||||+.+. +++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||..
T Consensus 30 ~~~IPvIDls~~~----~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~GY~~ 104 (325)
T PLN02997 30 AVDVPVVDLSVSD----EDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE-EDFEGYKR 104 (325)
T ss_pred CCCCCeEECCCCC----HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-CCccccCc
Confidence 4579999999752 345789999999999999999999999999999999999999999999998653 34689976
Q ss_pred ccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 124 AFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 124 ~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
... .+..||+|.++....|......|.||+.+|+||+++++|+++|.++.
T Consensus 105 ~~~---~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~ 154 (325)
T PLN02997 105 NYL---GGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLT 154 (325)
T ss_pred ccc---cCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHH
Confidence 532 35668999876554444334579999988999999999999999874
No 21
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.95 E-value=9.7e-28 Score=197.61 Aligned_cols=125 Identities=28% Similarity=0.516 Sum_probs=102.5
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCcccccc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQ 123 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~ 123 (178)
...||+|||+.+.+. .+++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... .+||..
T Consensus 4 ~~~iPvIDls~~~~~-~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~---~~gy~~ 79 (321)
T PLN02299 4 MESFPVIDMEKLNGE-ERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA---SKGLEG 79 (321)
T ss_pred CCCCCEEECcCCCcc-cHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC---CCCccc
Confidence 567999999988533 3456789999999999999999999999999999999999999999999997542 357754
Q ss_pred ccccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 124 AFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 124 ~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
... .....||+|.|.++..|. ...+.||+.+++||+++++|+++|.++.
T Consensus 80 ~~~--~~~~~d~ke~~~~~~~~~--~~~~~wP~~~~~fr~~~~~y~~~~~~l~ 128 (321)
T PLN02299 80 VQT--EVEDLDWESTFFLRHLPE--SNLADIPDLDDEYRKVMKDFALELEKLA 128 (321)
T ss_pred ccc--cCCCcCHHHHcccccCCc--cccccCccccHHHHHHHHHHHHHHHHHH
Confidence 321 124569999998864442 2468899988999999999999999875
No 22
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.95 E-value=1.3e-27 Score=197.85 Aligned_cols=128 Identities=22% Similarity=0.395 Sum_probs=103.5
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCcccccc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQ 123 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~ 123 (178)
...||+|||+.. .+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ..++||.+
T Consensus 12 ~~~iP~IDl~~~----~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~-~~~~GY~~ 86 (332)
T PLN03002 12 VSSLNCIDLAND----DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN-EKHRGYTP 86 (332)
T ss_pred CCCCCEEeCCch----hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC-CCCCCcCc
Confidence 557999999952 2345788999999999999999999999999999999999999999999998653 34789986
Q ss_pred cccccc----ccCCCccccccceeC-CCC-------CCCCCCCCCC--ccchHHHHHHHHHHHhhhh
Q 030400 124 AFVVSE----EQKLDWADIFSMITL-PVH-------LRKPHLFPKL--PPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 124 ~~~~~~----~~~~d~~E~~~~~~~-p~~-------~~~~n~wP~~--~~~fr~~~~~y~~~~~~~~ 176 (178)
...... ....||+|.|+++.. |.. ..++|.||+. +|+||+++++|+++|.+|.
T Consensus 87 ~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~ 153 (332)
T PLN03002 87 VLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVS 153 (332)
T ss_pred ccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHH
Confidence 543221 123699999988743 211 2458999974 7899999999999999875
No 23
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.94 E-value=1.3e-26 Score=191.78 Aligned_cols=122 Identities=25% Similarity=0.464 Sum_probs=98.7
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccc
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~ 124 (178)
..||||||+.. +..++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ..+||+..
T Consensus 25 ~~iPvIDls~~-------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~--~~~Gy~~~ 95 (335)
T PLN02156 25 VLIPVIDLTDS-------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP--DPFGYGTK 95 (335)
T ss_pred CCCCcccCCCh-------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC--CCcccCcc
Confidence 45999999831 2467899999999999999999999999999999999999999999998543 34588653
Q ss_pred cccccccCCCccccccceeCCCC--CCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 125 FVVSEEQKLDWADIFSMITLPVH--LRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 125 ~~~~~~~~~d~~E~~~~~~~p~~--~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
.. ......+|+|.|.+...+.. ...+|.||+.+++||+++++|+++|.+|.
T Consensus 96 ~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~ 148 (335)
T PLN02156 96 RI-GPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMS 148 (335)
T ss_pred cc-CCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHH
Confidence 22 22234689999988764432 12478999988899999999999999885
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.94 E-value=1.2e-26 Score=189.56 Aligned_cols=122 Identities=26% Similarity=0.462 Sum_probs=97.1
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCcccccccc
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQAF 125 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~~ 125 (178)
+||||||+.+.. ..+++++++|++||++||||||+||||+.++++++++.+++||+||.++|.. .... ..++...
T Consensus 2 ~iPvIDls~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~~--~~~~~~~- 76 (303)
T PLN02403 2 EIPVIDFDQLDG-EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESEI--AKALDNE- 76 (303)
T ss_pred CCCeEeCccCCc-ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-cccc--cCccccc-
Confidence 599999998853 3345688999999999999999999999999999999999999999999962 2111 1122111
Q ss_pred ccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 126 VVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 126 ~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
......||+|.|.++..|. ...|.||+.+|+||+++++|+++|.++.
T Consensus 77 --~~~~~~d~kE~~~~~~~p~--~~~~~wP~~~p~fr~~~~~y~~~~~~l~ 123 (303)
T PLN02403 77 --GKTSDVDWESSFFIWHRPT--SNINEIPNLSEDLRKTMDEYIAQLIKLA 123 (303)
T ss_pred --CCCCCccHhhhcccccCCc--cchhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 1134569999999876553 2568899888999999999999999875
No 25
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.94 E-value=2.3e-26 Score=164.21 Aligned_cols=110 Identities=25% Similarity=0.488 Sum_probs=89.3
Q ss_pred HHHHHhCCCCCCCCCccCCCCCCCCCCCCCCCCCCceeecCCCCCCcc-hHHHHHHHHHHHHhcceEEEecCCCCHHHHH
Q 030400 13 VQELVKNPMLVVPPRYIRPDQDSPINSDDTLISQIPVIDMQSLLSEES-MDSELAKLDFACKEWGFFQLVNHGVSSAFLE 91 (178)
Q Consensus 13 ~~~l~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~iPvIDls~l~~~~~-~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~ 91 (178)
++.|.. ...+|..|+++..++|.........+||||||+.+.+++. +.+++++|++||++||||||+||||+.++++
T Consensus 6 ~~~l~~--~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid 83 (120)
T PLN03176 6 LTALAE--EKTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVS 83 (120)
T ss_pred HHHHhc--cCCCCHhhcCChhhCcCccccccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
Confidence 445533 2789999999998887422112235799999999875543 3457899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHhhcccCCCCccccccc
Q 030400 92 KLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124 (178)
Q Consensus 92 ~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~ 124 (178)
++++.+++||+||.++|+++...++...||+..
T Consensus 84 ~~~~~~~~FF~LP~e~K~k~~~~~~~~~gy~~~ 116 (120)
T PLN03176 84 EMTTLAKEFFALPPEEKLRFDMSGGKKGGFIVS 116 (120)
T ss_pred HHHHHHHHHHCCCHHHHHhcccCCCccCCcchh
Confidence 999999999999999999998776667799654
No 26
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.91 E-value=3.7e-24 Score=175.02 Aligned_cols=119 Identities=24% Similarity=0.384 Sum_probs=92.0
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccc
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~ 124 (178)
..||||||+.+. +.+++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||...
T Consensus 4 ~~iPvIDls~~~------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~-~~~~GY~~~ 76 (300)
T PLN02365 4 VNIPTIDLEEFP------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDV-ILGSGYMAP 76 (300)
T ss_pred CCCCEEEChhhH------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCC-CCCCCCCCc
Confidence 459999999862 2358999999999999999999999999999999999999999999996432 235799764
Q ss_pred cccccccCCCccccccceeCCCCCCCCCCCCC---CccchHHHHHHHHHHHhhhh
Q 030400 125 FVVSEEQKLDWADIFSMITLPVHLRKPHLFPK---LPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 125 ~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~---~~~~fr~~~~~y~~~~~~~~ 176 (178)
. ...+++|.|.+..... ...++.||. .+|+||+++++|+++|.++.
T Consensus 77 ~-----~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~ 125 (300)
T PLN02365 77 S-----EVNPLYEALGLYDMAS-PQAVDTFCSQLDASPHQRETIKKYAKAIHDLA 125 (300)
T ss_pred C-----CCCCchhheecccccC-chhhhhccccCCCCchHHHHHHHHHHHHHHHH
Confidence 3 2246888887653111 011234442 35789999999999999875
No 27
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.91 E-value=7.8e-24 Score=175.57 Aligned_cols=124 Identities=25% Similarity=0.401 Sum_probs=89.8
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhccc-CCC--Cccc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQ-HPG--DVEG 120 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~-~~~--~~~G 120 (178)
..+||+|||+.+ .+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. ... ...|
T Consensus 36 ~~~IPvIDls~~--------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g 107 (341)
T PLN02984 36 DIDIPVIDMECL--------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWG 107 (341)
T ss_pred cCCCCeEeCcHH--------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccC
Confidence 456999999965 25799999999999999999999999999999999999999999999852 111 1123
Q ss_pred ccccccc---c----cccCCCccccccceeCCCCCC--CCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 121 FGQAFVV---S----EEQKLDWADIFSMITLPVHLR--KPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 121 Y~~~~~~---~----~~~~~d~~E~~~~~~~p~~~~--~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
|...... . .....||+|.|.++..+.... .++.| ..+|+||+++++|+++|.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~-~~~p~fr~~~~~y~~~~~~La 171 (341)
T PLN02984 108 TPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSD-PKLESFRVLMEEYGKHLTRIA 171 (341)
T ss_pred cccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCC-CccHHHHHHHHHHHHHHHHHH
Confidence 3211110 0 112569999999874321110 11222 235799999999999999875
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.35 E-value=1.5e-12 Score=104.63 Aligned_cols=83 Identities=30% Similarity=0.561 Sum_probs=64.5
Q ss_pred HHHHHHHhc-CCHHHHhhcccCCC--Ccccccccccc--ccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHH
Q 030400 94 KKEVQGFFN-LSMEEKKKYWQHPG--DVEGFGQAFVV--SEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVL 168 (178)
Q Consensus 94 ~~~a~~FF~-lp~e~K~~~~~~~~--~~~GY~~~~~~--~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y 168 (178)
.+.+++||+ ||.|+|+++....+ .++||+..... ...+..||+|.|.+...|.....+|.||+.+|+||+++++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 568999997 99999999876532 46899654321 12335699999998755544446899999889999999999
Q ss_pred HHHHhhhh
Q 030400 169 DMDLQTKR 176 (178)
Q Consensus 169 ~~~~~~~~ 176 (178)
+++|.+|.
T Consensus 82 ~~~~~~l~ 89 (262)
T PLN03001 82 GDCMKALA 89 (262)
T ss_pred HHHHHHHH
Confidence 99999875
No 29
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=89.12 E-value=0.48 Score=40.65 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 030400 43 LISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLS 104 (178)
Q Consensus 43 ~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp 104 (178)
....||.||++.+.++. +.+++.+..++.|++.|.|+ ||.+...+..+..++|.+.-
T Consensus 46 G~~~IP~i~f~di~~~~----~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~n 102 (416)
T PF07350_consen 46 GSSIIPEIDFADIENGG----VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKAN 102 (416)
T ss_dssp T--SS-EEEHHHHHCT-------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceeeHHHHhCCC----CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHhC
Confidence 34569999999876442 45677788899999999998 99999999999888887543
No 30
>PRK08130 putative aldolase; Validated
Probab=76.80 E-value=3.9 Score=31.73 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||+|++... + ..++++.+.+++++...+.+.|||+
T Consensus 126 g~i~v~~y~~~--g--~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 126 GHVPLIPYYRP--G--DPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred CccceECCCCC--C--hHHHHHHHHHHhccCCEEEEcCCCC
Confidence 45898877542 1 2357888999999999999999996
No 31
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=76.01 E-value=3.9 Score=30.96 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||++++... + ..++++++.+++++..-+.|.|||+
T Consensus 119 ~~v~v~~~~~~--g--~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 119 KKIPILPFRPA--G--SVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CCEeeecCCCC--C--cHHHHHHHHHHhccCCEEEEcCCCC
Confidence 36888887642 2 2357888889998888999999996
No 32
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=68.39 E-value=9 Score=32.23 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=38.0
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
...+|.||++.+.+++ +...++.+++.++|++.+.|-.++.+.+ .+.++.|-.
T Consensus 107 ~~~~~~~d~~~~~~~~---~~~~~~~~~l~~~G~v~~rg~~~~~~~~---~~~~~~~G~ 159 (366)
T TIGR02409 107 ELSLPKFDHEAVMKDD---SVLLDWLSAVRDVGIAVLKGAPTKPGAV---EKLGKRIGF 159 (366)
T ss_pred cccCCceeHHHHhCCH---HHHHHHHHHHHhccEEEEeCCCCCHHHH---HHHHHHhcc
Confidence 3568889987755332 3567899999999999999988876644 445555543
No 33
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=67.74 E-value=7.3 Score=30.46 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.6
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.+|++++... + ..++++.+.+++.+...+.|.|||+
T Consensus 127 ~v~~~~y~~~--g--s~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAAS--G--TPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCC--C--cHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 4677766532 1 2467889999999999999999996
No 34
>PRK06755 hypothetical protein; Validated
Probab=64.99 E-value=7.8 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||+|.... +..+++++.+.++.++...+.|.|||+
T Consensus 136 ~IPiv~~~~----~~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEK----KFADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCC----chhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 589998753 222446666777777888899999996
No 35
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=64.56 E-value=10 Score=28.49 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||++ ... .+ ..++++.+.+++.+.-.+.|.|||+
T Consensus 114 ~~ipv~-~~~---~~-~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 114 GTIPVV-GGD---IG-SGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CCEeEE-eCC---CC-CHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 358888 322 12 2357888899999989999999996
No 36
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=61.24 E-value=12 Score=29.09 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=25.6
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||++.+.. . ...++++.+.+++.+...+.|.|||+
T Consensus 124 ~i~~~~y~~---~-gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYAT---F-GTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCC---C-ChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 456655432 1 12356788888899899999999996
No 37
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=59.83 E-value=10 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||+|.+... + ..++++.+.+++.+...+.+.|||+
T Consensus 122 ~v~~~~y~~~---g-s~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATF---G-TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCC---C-CHHHHHHHHHHhCcCCEEEecCCCC
Confidence 4777765542 1 2356788888888888999999996
No 38
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=58.90 E-value=5.1 Score=30.05 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHH-hcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACK-EWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~-~~GFf~l~nHGI 85 (178)
..||+|+.... + ..+.++.|.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~--~--~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPP--G--SEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THST--T--CHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccc--c--chhhhhhhhhhhcCCceEEeecCCce
Confidence 67999988652 1 1346788899998 889999999995
No 39
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=56.08 E-value=17 Score=27.70 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHH---hcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACK---EWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~---~~GFf~l~nHGI 85 (178)
.||+++. . .+ ..++++.+.++++ +...+.|.|||+
T Consensus 126 ~vp~~~~-~--~g--s~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN-T--QD--IARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC-C--CC--hHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 4888863 1 12 2457888888886 478999999996
No 40
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=56.05 E-value=13 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.4
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHH-hcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACK-EWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~-~~GFf~l~nHGI 85 (178)
.||+++. +. + .+++++.+.++++ +...+.+.|||+
T Consensus 137 ~vpv~~~--~~-~--~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIEN--HA-D--IPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecC--CC-C--HHHHHHHHHHHhccCCcEEEECCCce
Confidence 4677752 11 1 2468888999987 888999999996
No 41
>PRK05834 hypothetical protein; Provisional
Probab=55.87 E-value=16 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcc--eEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWG--FFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~G--Ff~l~nHGI 85 (178)
.||++...... +.....++.+.+++.+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~--~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFD--DWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccc--hHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 47776544321 111234667888887755 899999996
No 42
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=55.33 E-value=16 Score=29.70 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=26.6
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||++.+... . ..++++.+.+++.+...+.+.|||+
T Consensus 179 ~i~vvpy~~p---g-s~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVP---G-TDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCC---C-CHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4677765432 1 2357788888988888999999996
No 43
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=54.19 E-value=12 Score=28.84 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||+++..... +...+.+..+.+++.+.-.+.+.|||+
T Consensus 121 ~~ip~~~~~~~~--~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPE--TGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCC--ccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 468888776531 122346667777778888999999996
No 44
>PRK06357 hypothetical protein; Provisional
Probab=53.59 E-value=23 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhc------ceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEW------GFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~------GFf~l~nHGI 85 (178)
.||++.+... + ..++++.+.+++++. ..+.|.|||+
T Consensus 130 ~i~~~p~~~~--g--s~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA--T--SPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC--C--cHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 4677665542 1 245777888888764 4899999996
No 45
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=52.41 E-value=20 Score=29.09 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcceEEEecC----CCCHH---HHHHHHHHHHHHhcCCH
Q 030400 63 SELAKLDFACKEWGFFQLVNH----GVSSA---FLEKLKKEVQGFFNLSM 105 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nH----GI~~~---~~~~~~~~a~~FF~lp~ 105 (178)
+..++|.++++ ||.|++.- |+... .+.+.++..|.|.++|.
T Consensus 161 ~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv 208 (265)
T COG0159 161 ERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPV 208 (265)
T ss_pred HHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCe
Confidence 34556655554 99999874 44332 47777777777776654
No 46
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=52.26 E-value=42 Score=26.94 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcce--EEEec-CCCCHHHHHHHHHHHHHHhc
Q 030400 63 SELAKLDFACKEWGF--FQLVN-HGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 63 ~~~~~l~~A~~~~GF--f~l~n-HGI~~~~~~~~~~~a~~FF~ 102 (178)
.....+.+++..+|| |+++| ||=....+..+.+..+..|.
T Consensus 90 ~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 90 ALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 357789999999999 66666 88777777777776666554
No 47
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=52.23 E-value=13 Score=24.43 Aligned_cols=20 Identities=20% Similarity=0.251 Sum_probs=17.0
Q ss_pred HHHHHHHHhcceEEEecCCC
Q 030400 66 AKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 66 ~~l~~A~~~~GFf~l~nHGI 85 (178)
+.|.+-|-+.||.||.-|-+
T Consensus 36 ~~if~eCVeqGFiYVs~~~~ 55 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWM 55 (89)
T ss_pred cHHHHHHHhcceEEEEeeee
Confidence 46788999999999988755
No 48
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=52.11 E-value=7.6 Score=20.25 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=12.8
Q ss_pred EEEecCCCCHHHHHHHH
Q 030400 78 FQLVNHGVSSAFLEKLK 94 (178)
Q Consensus 78 f~l~nHGI~~~~~~~~~ 94 (178)
.||..||++.+.+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47888999988776544
No 49
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=51.74 E-value=13 Score=28.77 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||+|.+.... ..++++.+.+++.+..-+.|.|||+
T Consensus 121 ~i~~v~y~~~g----s~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFG----STKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCC----hHHHHHHHHHHhhhCCEEehhcCCC
Confidence 35665554321 2346777888888889999999996
No 50
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=51.24 E-value=18 Score=29.29 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=26.8
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||++.+.. +. ..++++.+.+++++..-+.|.|||+
T Consensus 177 ~i~vvp~~~---pG-s~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMV---PG-TNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcC---CC-CHHHHHHHHHHhccCCEEEEcCCCC
Confidence 367766543 22 2367888999999888999999996
No 51
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=50.51 E-value=26 Score=21.64 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcc--eEEEec------CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWG--FFQLVN------HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~G--Ff~l~n------HGI~~~~~~~~~~~a~~ 99 (178)
.+....|.+.++++| .+.++. |||+.+.+..+++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 346778888888877 777775 78999988888877654
No 52
>PRK06661 hypothetical protein; Provisional
Probab=49.22 E-value=22 Score=28.01 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcceEEEecCCC
Q 030400 63 SELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
+.++.+.+++.+...+.|.|||+
T Consensus 138 ~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 138 KQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hHHHHHHHHhCCCCEEEECCCCC
Confidence 45778888999999999999996
No 53
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=48.84 E-value=67 Score=23.12 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
...++++.+.++++.++++.+ +|++...+.++....+.
T Consensus 4 ~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 4 EELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 357889999999998888887 58999888888877654
No 54
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=47.92 E-value=30 Score=29.10 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHh
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFF 101 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF 101 (178)
.+|.+|+..+...+ ++...++.+++.++|+..+.|-.++.+.+. +.+++|.
T Consensus 100 ~~~~~~~~~~~~~~--d~~l~~~l~~l~~~G~v~~~g~~~~~~~~~---~~a~riG 150 (362)
T TIGR02410 100 KDPSVHFKTTYDHT--DSTLKSFSKNIYKYGFTFVDNVPVTPEATE---KLCERIS 150 (362)
T ss_pred cCCceeHHHHhccC--HHHHHHHHHHHHhhCEEEEcCCCCCHHHHH---HHHHHhc
Confidence 35778877665431 245778999999999999999988776554 4445543
No 55
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=47.56 E-value=41 Score=19.71 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 030400 64 ELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLS 104 (178)
Q Consensus 64 ~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp 104 (178)
.+..|...+...||....-.|+-...+.++...-+.++.|+
T Consensus 4 ~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 4 DVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 46788899999999966666777777777777777777775
No 56
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=45.52 E-value=21 Score=27.72 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=24.8
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHH--HhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFAC--KEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~--~~~GFf~l~nHGI 85 (178)
.||++..... + ..+.++.+.+++ .+...+.|.|||+
T Consensus 130 ~ip~~~y~~~--g--~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 130 PIPVGPFALI--G--DEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CeeccCCcCC--C--cHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 4666655432 1 235677888888 6778899999996
No 57
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=44.00 E-value=49 Score=26.59 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
..+|.=|||+... .++..++|.+++.+.|++.+.|-.++.+ +..+.++.|-.+
T Consensus 13 Gaev~g~dl~~~l----~~~~~~~l~~~l~~~Gvlvfr~q~l~~~---~~~~~~~~~G~~ 65 (277)
T PRK09553 13 GAQISGIDLTRPL----SDNQFEQLYHALLRHQVLFFRDQPITPQ---QQRDLAARFGDL 65 (277)
T ss_pred eeEEeCcccCCcC----CHHHHHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhCCC
Confidence 3456557776422 1245788999999999999999988754 555666677654
No 58
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=43.23 E-value=38 Score=27.79 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.3
Q ss_pred HHHHHhcceEEEecCCCCHHHHHHHHHHHH
Q 030400 69 DFACKEWGFFQLVNHGVSSAFLEKLKKEVQ 98 (178)
Q Consensus 69 ~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~ 98 (178)
.+++++.|||.|.| +|..++..+.+...
T Consensus 18 l~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 18 LRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 58899999999988 67888888777655
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=42.78 E-value=73 Score=25.88 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
.++|.++.++.|.++--|-.|-..++.++.+.+..+|.
T Consensus 108 ~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~ 145 (266)
T COG0289 108 LEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD 145 (266)
T ss_pred HHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence 44455555555555555555555555555555555544
No 60
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=42.55 E-value=41 Score=25.87 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcc---eEEEecCCC
Q 030400 62 DSELAKLDFACKEWG---FFQLVNHGV 85 (178)
Q Consensus 62 ~~~~~~l~~A~~~~G---Ff~l~nHGI 85 (178)
+++++.+.+++++.. .+.|.|||+
T Consensus 145 ~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 145 ARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 467888999998864 899999996
No 61
>PRK15331 chaperone protein SicA; Provisional
Probab=42.39 E-value=31 Score=25.94 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
++.++.|.+|+.+ |==.-.=|||+++.++.++..+.+||..
T Consensus 10 ~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 10 ERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred HHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 3577888888887 4222224999999999999999999963
No 62
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=40.90 E-value=57 Score=22.80 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=31.7
Q ss_pred eeecCCCCCCcchHHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 49 VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 49 vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
+||++. .+.+....+.|.+.|-=.|++ .|.+.+.++.+.++++.
T Consensus 71 vIDfT~-------p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 71 VIDFTN-------PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp EEEES--------HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred EEEcCC-------hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 678873 235666777788889999997 59998888888776654
No 63
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=39.38 E-value=1.1e+02 Score=22.14 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
...+++|.+.+++..++++.+ +|++.+.+.++....+.
T Consensus 6 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 6 EEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 346788888899888777776 58998888888877764
No 64
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=38.57 E-value=73 Score=20.46 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHH
Q 030400 63 SELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKE 96 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~ 96 (178)
.+++.|..+++.+||..=.-||.-.+.+.+++..
T Consensus 16 ~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~ 49 (74)
T PF08823_consen 16 DVAREVQEALKRLGYYKGEADGVWDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHH
Confidence 5789999999999998888888877666655544
No 65
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=38.42 E-value=83 Score=23.30 Aligned_cols=38 Identities=8% Similarity=0.252 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+.++-.++|++ +|++...++++.+..+.
T Consensus 4 ~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 4 QKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 356788999999888777775 78999988888887764
No 66
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.40 E-value=70 Score=18.50 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHH
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEV 97 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a 97 (178)
++.+.+++++.||. |++++++.+++.+
T Consensus 21 ~~~~l~~l~~~g~~------is~~l~~~~L~~~ 47 (48)
T PF11848_consen 21 VKPLLDRLQQAGFR------ISPKLIEEILRRA 47 (48)
T ss_pred HHHHHHHHHHcCcc------cCHHHHHHHHHHc
Confidence 55667788999998 7899988887654
No 67
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=36.22 E-value=1.1e+02 Score=22.98 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 63 SELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
+.+++|.+.+.++-.++|++ .|++...++++.+..++
T Consensus 5 ~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 5 EYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 46788888888888777775 68888888888887764
No 68
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=36.05 E-value=78 Score=24.41 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHH
Q 030400 63 SELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGF 100 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~F 100 (178)
+..++|++++.+.||+.|.|-.++.+.+.+ .++.|
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~---~~~~~ 58 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEA---LASRL 58 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHH---HHHhh
Confidence 368899999999999999988876655444 55555
No 69
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=34.94 E-value=1.5e+02 Score=22.02 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+++.-++++++ +|++...+.++....+.
T Consensus 7 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 7 KEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 346778888888877776666 47888888877777665
No 70
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=33.62 E-value=1.5e+02 Score=22.29 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.++.|.+.+++...|.|++ +|++...+.++.+..|+
T Consensus 9 ~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 9 KELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 457888999999877777776 79999999999888876
No 71
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=32.81 E-value=80 Score=24.77 Aligned_cols=40 Identities=13% Similarity=-0.070 Sum_probs=23.9
Q ss_pred CCceeecCCCCC--CcchHHHHHHHHHHHHhc-------ceEEEecCCC
Q 030400 46 QIPVIDMQSLLS--EESMDSELAKLDFACKEW-------GFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~--~~~~~~~~~~l~~A~~~~-------GFf~l~nHGI 85 (178)
.||+++...-.+ .+-..+.++.|.+++++. ..+.+.|||+
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 477776543110 001124567777887754 4788999996
No 72
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=32.47 E-value=1.2e+02 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.472 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+.++.+++|++ +|++...++++.+..+.
T Consensus 9 ~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 9 KEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 357888888999888888886 68998888888888775
No 73
>COG5488 Integral membrane protein [Function unknown]
Probab=31.33 E-value=52 Score=24.38 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.7
Q ss_pred eeecCCCCCCcchHHHHHHHHHHHHh
Q 030400 49 VIDMQSLLSEESMDSELAKLDFACKE 74 (178)
Q Consensus 49 vIDls~l~~~~~~~~~~~~l~~A~~~ 74 (178)
++|+..+.++|.+.++++++.+|+.+
T Consensus 136 ~~~ig~fL~Pd~Re~fa~af~~aLat 161 (164)
T COG5488 136 VVDIGRFLNPDDRESFAAAFSRALAT 161 (164)
T ss_pred eeehhcccChHHHHHHHHHHHHHHHh
Confidence 58999998888887888888888764
No 74
>PRK07044 aldolase II superfamily protein; Provisional
Probab=31.27 E-value=68 Score=25.54 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=24.5
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||++++..+. ...+.++.+.+++.+..-+.|.|||+
T Consensus 138 ~i~~~~y~~~~---~~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIA---LDLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCc---CCHHHHHHHHHHhccCCEEEECCCCc
Confidence 36666554321 01235677777888888999999996
No 75
>PRK06208 hypothetical protein; Provisional
Probab=30.74 E-value=50 Score=26.83 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcceEEEecCCC
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.++++.+.+++++...+.|.|||+
T Consensus 177 ~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 177 TSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred hHHHHHHHHHhccCCEEEECCCCc
Confidence 357888889999999999999996
No 76
>PRK06486 hypothetical protein; Provisional
Probab=30.59 E-value=49 Score=26.59 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcceEEEecCCC
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.++++.+.+++.+...+.|.|||+
T Consensus 162 ~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 162 AAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hhHHHHHHHHhCcCCEEEECCCCC
Confidence 356788889999999999999996
No 77
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=30.24 E-value=52 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcceEEEecCCCC
Q 030400 63 SELAKLDFACKEWGFFQLVNHGVS 86 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHGI~ 86 (178)
.+...|..++|.|||-.+.++.-.
T Consensus 36 ~Fg~aL~~~LR~~GYaV~e~~~~~ 59 (121)
T PF07283_consen 36 PFGQALENALRAKGYAVIEDDPPD 59 (121)
T ss_pred hHHHHHHHHHHhcCcEEEecCCcc
Confidence 588899999999999999988653
No 78
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=30.12 E-value=1.1e+02 Score=24.55 Aligned_cols=38 Identities=26% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
.++-.+.+++.||+.|.+= ++.+.++++.+...+.++-
T Consensus 18 t~eqi~~f~~dGyvvl~~v-ls~eev~~lr~~i~~~~~~ 55 (277)
T TIGR02408 18 SAKQLQSYERDGFLLLENL-FSDDEVAALLAEVERMTRD 55 (277)
T ss_pred CHHHHHHHHHCCEEECccc-CCHHHHHHHHHHHHHHHhc
Confidence 3445579999999988776 8999999999999888764
No 79
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=29.13 E-value=1.4e+02 Score=23.74 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCCc-eeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHH
Q 030400 44 ISQIP-VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEK 92 (178)
Q Consensus 44 ~~~iP-vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~ 92 (178)
+...| ||||+.+..... -....|...|++.|+.-+--.|-+.+....
T Consensus 44 f~~aPvVldl~~l~~~~~--~dl~~L~~~l~~~gl~~vGv~g~~~~~~~~ 91 (235)
T PRK04516 44 SGVVPFVLDVQEFDYPES--LDLAALVSLFSRHGMQILGLKHSNERWAAV 91 (235)
T ss_pred CCCCcEEEEchhhCCccc--ccHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 45567 789998853221 125679999999999988766666654443
No 80
>PRK07490 hypothetical protein; Provisional
Probab=28.81 E-value=56 Score=25.94 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcceEEEecCCC
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.+.++.|.+++.+.--+.|.|||+
T Consensus 146 ~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 146 EEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred HHHHHHHHHHhCcCCEEEECCCCc
Confidence 357788999999989999999996
No 81
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=1.6e+02 Score=22.42 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcceEEEec
Q 030400 65 LAKLDFACKEWGFFQLVN 82 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~n 82 (178)
..++.++|+..||..+.|
T Consensus 83 ~~~~ik~Ak~~Gf~I~L~ 100 (187)
T COG4185 83 ILELIKTAKAAGFYIVLN 100 (187)
T ss_pred HHHHHHHHHhCCeEEEEE
Confidence 456779999999976654
No 82
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.83 E-value=2.1e+02 Score=19.98 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=35.0
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHh---cceEEEecCCCCHHHHHHHHHHHHHH
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKE---WGFFQLVNHGVSSAFLEKLKKEVQGF 100 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~---~GFf~l~nHGI~~~~~~~~~~~a~~F 100 (178)
...||.+-... -.+|..||-. ..-..|++.|....+++++....+++
T Consensus 67 ~~~Ip~~~~~s----------k~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 67 EKGIPYVYVKK----------KEDLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEAL 116 (117)
T ss_pred HcCCCEEEeCC----------HHHHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHhc
Confidence 34688776542 2567777764 67889999999999999988876653
No 83
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=26.45 E-value=77 Score=20.78 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcceEEEecC
Q 030400 63 SELAKLDFACKEWGFFQLVNH 83 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nH 83 (178)
++.+.|.++|+++|.-.+-+|
T Consensus 75 ~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 75 EIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHhCCcEeCcC
Confidence 577889999999999888776
No 84
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=26.43 E-value=98 Score=20.37 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHhh
Q 030400 87 SAFLEKLKKEVQGFFNLSMEEKKK 110 (178)
Q Consensus 87 ~~~~~~~~~~a~~FF~lp~e~K~~ 110 (178)
.++++.+...-..|.+||.|+|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 355666666777888999998864
No 85
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=24.43 E-value=1.4e+02 Score=23.98 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=35.5
Q ss_pred CCCCc-eeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHH
Q 030400 44 ISQIP-VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKK 95 (178)
Q Consensus 44 ~~~iP-vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~ 95 (178)
+...| ||||+.+...... .-...|...|++.|+.-|--.|-..++.+....
T Consensus 48 F~~~PvVlDl~~l~~~~~~-~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 48 FGRAAVILDFGGLSQVPDL-ATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred hCCCcEEEEchhhcCcccc-ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 45566 5899998532211 125679999999999999888887776655444
No 86
>PRK11460 putative hydrolase; Provisional
Probab=24.30 E-value=2.2e+02 Score=22.03 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcce---EEE---ecCCCCHHHHHHHHHHHHHHh
Q 030400 63 SELAKLDFACKEWGF---FQL---VNHGVSSAFLEKLKKEVQGFF 101 (178)
Q Consensus 63 ~~~~~l~~A~~~~GF---f~l---~nHGI~~~~~~~~~~~a~~FF 101 (178)
+.+.++.+++++.|. +.+ .+|+|+.+.++.+.+..+.++
T Consensus 165 ~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 165 AHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 345677777776664 222 479999988888877776666
No 87
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=23.84 E-value=87 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=24.3
Q ss_pred eeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 49 VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 49 vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
+|.|.. +..+.+...|..++|.|||-.+.+-..
T Consensus 54 t~~l~q----~~~D~Fg~aL~~aLR~~GYaV~e~~~~ 86 (151)
T PRK13883 54 RFELQQ----PTPDAFGQALVKALRDKGYALLEYNPA 86 (151)
T ss_pred EEEEec----CCCcHHHHHHHHHHHHcCeEEEecCCc
Confidence 666643 122358899999999999999986543
No 88
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=23.66 E-value=86 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeecCCCCCCcchHHHHHHHHHHHHhcceEEEec
Q 030400 49 VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVN 82 (178)
Q Consensus 49 vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~n 82 (178)
+|.|.. +. +.+...|..+++.|||-.+.+
T Consensus 60 t~~l~q----~~-d~Fg~aL~~aLr~~GYaVvtd 88 (145)
T PRK13835 60 TIKLKK----DT-SPFGQALEAALKGWGYAVVTD 88 (145)
T ss_pred EEEEee----cC-cHHHHHHHHHHHhcCeEEeec
Confidence 676653 11 358899999999999999973
No 89
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=23.61 E-value=59 Score=23.45 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=16.1
Q ss_pred ecCCCCHHHHHHHHHHHH
Q 030400 81 VNHGVSSAFLEKLKKEVQ 98 (178)
Q Consensus 81 ~nHGI~~~~~~~~~~~a~ 98 (178)
.+|||..+.++.+++.|+
T Consensus 114 ~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 114 ENHGITPEMIDALYKYAK 131 (133)
T ss_pred HhcCCCHHHHHHHHHHhC
Confidence 789999999999998764
No 90
>PLN02452 phosphoserine transaminase
Probab=23.15 E-value=1.3e+02 Score=25.43 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcceEEEecCC------------CCHHHHHHHHHHHHHH
Q 030400 64 ELAKLDFACKEWGFFQLVNHG------------VSSAFLEKLKKEVQGF 100 (178)
Q Consensus 64 ~~~~l~~A~~~~GFf~l~nHG------------I~~~~~~~~~~~a~~F 100 (178)
.-+++.+.|++-||..+.+|+ |+.+-++++.+..++|
T Consensus 312 ~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 312 LEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred hHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 567888999999999999984 6889999999998888
No 91
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=23.00 E-value=2.4e+02 Score=23.05 Aligned_cols=37 Identities=16% Similarity=-0.063 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
.++|.++ .+.|.++.-|-.|-..++.++.+.+..+|.
T Consensus 108 ~~~l~~~-~~i~~l~apNfSiGv~ll~~~~~~aA~~~~ 144 (275)
T TIGR02130 108 LAKLVAD-AKHPAVIAPNMAKQIVAFLAAIEFLAEEFP 144 (275)
T ss_pred HHHHHHh-cCCCEEEECcccHHHHHHHHHHHHHHHhhc
Confidence 4455444 347777777777777777777777777774
No 92
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=22.90 E-value=1.8e+02 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcceEEEecCCCC----HHHHHHHHHHHHHH
Q 030400 64 ELAKLDFACKEWGFFQLVNHGVS----SAFLEKLKKEVQGF 100 (178)
Q Consensus 64 ~~~~l~~A~~~~GFf~l~nHGI~----~~~~~~~~~~a~~F 100 (178)
.++++.+.+..-||..-.+|||+ .+-++.+.+++++|
T Consensus 304 ~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 304 EVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred HHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 44555555567888888899875 57888888888874
No 93
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=22.85 E-value=1.6e+02 Score=25.03 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcceEEEecCC------------CCHHHHHHHHHHHHHH
Q 030400 63 SELAKLDFACKEWGFFQLVNHG------------VSSAFLEKLKKEVQGF 100 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHG------------I~~~~~~~~~~~a~~F 100 (178)
+.-+++.+.++..|+..|.+|+ ++.+-++++.+-.++|
T Consensus 310 ~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 310 RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3567888999999999999994 5778888888888887
No 94
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=22.48 E-value=1.2e+02 Score=18.53 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHHH--HHHHHhc-CCHHHHhhc
Q 030400 82 NHGVSSAFLEKLKK--EVQGFFN-LSMEEKKKY 111 (178)
Q Consensus 82 nHGI~~~~~~~~~~--~a~~FF~-lp~e~K~~~ 111 (178)
+.-||+++...+.+ .+..||. |+...+..+
T Consensus 3 ~~~vP~dl~~aL~~~p~a~~~f~~l~~~~rr~~ 35 (63)
T PF13376_consen 3 EVEVPEDLEAALEANPEAKEFFESLTPSYRREY 35 (63)
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHH
Confidence 34578888877766 6778884 888777655
No 95
>PLN02433 uroporphyrinogen decarboxylase
Probab=22.17 E-value=2e+02 Score=23.94 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcceEEEecCCCC----HHHHHHHHHHHHHHh
Q 030400 64 ELAKLDFACKEWGFFQLVNHGVS----SAFLEKLKKEVQGFF 101 (178)
Q Consensus 64 ~~~~l~~A~~~~GFf~l~nHGI~----~~~~~~~~~~a~~FF 101 (178)
.++++.+.+..-||+.-.+|||+ .+-++.+.+++++|-
T Consensus 297 ~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~~ 338 (345)
T PLN02433 297 EVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELR 338 (345)
T ss_pred HHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44555555556688888889976 578888988888853
No 96
>cd04367 IlGF_insulin_like IlGF_like family, insulin_like subgroup, specific to vertebrates. Members include a number of peptides including insulin and insulin-like growth factors I and II, which play a variety of roles in controlling processes such as metabolism, growth and differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, and differentiation. With the exception of the insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=22.07 E-value=63 Score=21.17 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcceEEEecCCC
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.+++++|.-.|.+-|||+--..+.
T Consensus 8 s~LvdaL~~VCG~RGF~~~pk~~r 31 (79)
T cd04367 8 SHLVDALYLVCGDRGFFYTPKRRR 31 (79)
T ss_pred HHHHHHHHHHHccCCcccCCcccc
Confidence 357889999999999999766554
No 97
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=21.85 E-value=1.5e+02 Score=24.36 Aligned_cols=39 Identities=5% Similarity=-0.042 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcceEEEecCCC----CHHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGV----SSAFLEKLKKEVQGF 100 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI----~~~~~~~~~~~a~~F 100 (178)
+++.+.+++.++.-||..=.+||| |.+-++.+.++++++
T Consensus 296 eeI~~~v~~~l~~~~~Il~~gcgi~~~tp~eni~a~v~a~~~~ 338 (340)
T TIGR01463 296 EKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIEACKSI 338 (340)
T ss_pred HHHHHHHHHHHHcCCeEECCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 346666777777667776678887 457788888877764
No 98
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=21.80 E-value=3.5e+02 Score=22.40 Aligned_cols=55 Identities=11% Similarity=0.279 Sum_probs=35.0
Q ss_pred CceeecCCCCCCcchHHHHHHHHHHHHhcceEEEec-----CCCCHHHHHHHHHHHHHHhcCCHH
Q 030400 47 IPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVN-----HGVSSAFLEKLKKEVQGFFNLSME 106 (178)
Q Consensus 47 iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~n-----HGI~~~~~~~~~~~a~~FF~lp~e 106 (178)
--||||..++.-| .+.|....+.+--+..+. |||-.++..++.+.+-++.+-|.+
T Consensus 265 ~EVInlrSirP~D-----~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~ 324 (359)
T KOG0524|consen 265 AEVINLRSIRPFD-----IETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQ 324 (359)
T ss_pred ceeEeeeccCccc-----HHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhh
Confidence 3466666554222 345666666666666654 788889999888866666566654
No 99
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=21.74 E-value=1.3e+02 Score=20.65 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=19.8
Q ss_pred eeecCCCC-CCcchHHHHHHHHHHHHhcceE
Q 030400 49 VIDMQSLL-SEESMDSELAKLDFACKEWGFF 78 (178)
Q Consensus 49 vIDls~l~-~~~~~~~~~~~l~~A~~~~GFf 78 (178)
+|+++.=. .....+++++.|..|+.+.|.|
T Consensus 4 ~Ieys~~l~~~~~~~~l~~~v~~al~~~~~~ 34 (113)
T cd00580 4 IIEYSANLEGRADIPELLRALHDALVASGLF 34 (113)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhcCCC
Confidence 67777522 2223456888899988887654
No 100
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=21.70 E-value=67 Score=21.84 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=11.3
Q ss_pred CCCCCCCCccchHHHH
Q 030400 150 KPHLFPKLPPLLRFSL 165 (178)
Q Consensus 150 ~~n~wP~~~~~fr~~~ 165 (178)
-|-+||+..||..+..
T Consensus 11 SP~~WPe~~PG~~ef~ 26 (95)
T PF10044_consen 11 SPELWPEQFPGVSEFA 26 (95)
T ss_pred CcccCCCCCCCHHHHH
Confidence 4678999888765443
No 101
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=21.46 E-value=2e+02 Score=19.72 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCceeecCCCCCCcch-HHHHHHHHHHHHhcceEEEecCCCCHHHH
Q 030400 46 QIPVIDMQSLLSEESM-DSELAKLDFACKEWGFFQLVNHGVSSAFL 90 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~-~~~~~~l~~A~~~~GFf~l~nHGI~~~~~ 90 (178)
.+--||++.+..-|+. =.+.-.+.+-|+..|- .+.=+|||+.+.
T Consensus 40 ~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~-~~~L~~~p~~L~ 84 (99)
T COG3113 40 DTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN-AVTLTGVPEQLR 84 (99)
T ss_pred CeEEEehhhcceechHHHHHHHHHHHHHHHcCC-eeEEecCcHHHH
Confidence 4557899987543332 1345677788998888 788899987653
No 102
>PF13309 HTH_22: HTH domain
Probab=21.33 E-value=88 Score=19.28 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcceEEEecC
Q 030400 64 ELAKLDFACKEWGFFQLVNH 83 (178)
Q Consensus 64 ~~~~l~~A~~~~GFf~l~nH 83 (178)
.-.+|.+.+.+-|+|.+.+-
T Consensus 25 ~k~~iV~~L~~~G~F~lKga 44 (64)
T PF13309_consen 25 EKKEIVRQLYEKGIFLLKGA 44 (64)
T ss_pred HHHHHHHHHHHCCCcccCcH
Confidence 45678899999999999873
No 103
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=21.27 E-value=1.9e+02 Score=23.20 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcc--eEEEecCCCCH------HHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWG--FFQLVNHGVSS------AFLEKLKKEVQ 98 (178)
Q Consensus 62 ~~~~~~l~~A~~~~G--Ff~l~nHGI~~------~~~~~~~~~a~ 98 (178)
+++.+.++++++..| |+.=.+||++. +-++.+.++++
T Consensus 261 e~i~~~v~~~l~~~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 261 EECIAKVEELVERLGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred HHHHHHHHHHHHHhCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 345566666666554 87777888764 56666666554
No 104
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=21.08 E-value=1e+02 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcceEEEe--cCCCC
Q 030400 63 SELAKLDFACKEWGFFQLV--NHGVS 86 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~--nHGI~ 86 (178)
+.+..|.+||+..|+.+++ +||=.
T Consensus 436 ~aig~Iy~A~~~~~y~lvvTADHGNA 461 (531)
T KOG4513|consen 436 EAIGKIYDAIEQVGYILVVTADHGNA 461 (531)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCCCCH
Confidence 4567899999999999998 68863
No 105
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=20.61 E-value=1.4e+02 Score=21.31 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCceeecCCCCC-CcchHHHHHHHHHHHHhcceE
Q 030400 46 QIPVIDMQSLLS-EESMDSELAKLDFACKEWGFF 78 (178)
Q Consensus 46 ~iPvIDls~l~~-~~~~~~~~~~l~~A~~~~GFf 78 (178)
.|=+.|++.+.. ++.-.+++++|+.-.+++|-+
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggd 98 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGD 98 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCch
Confidence 566778888763 222345677777777776654
No 106
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=20.19 E-value=1.7e+02 Score=23.48 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
.+++.+++. ++||+.+-++..++...+|=.
T Consensus 12 ~~eV~~~L~--------~agi~~~~i~~F~~~V~~yN~ 41 (250)
T PF14133_consen 12 QEEVKKALK--------SAGISKENIDNFFEWVNDYNQ 41 (250)
T ss_pred HHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHH
Confidence 455555555 788999999999999999865
Done!